RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13852
         (78 letters)



>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 339

 Score = 32.1 bits (71), Expect = 0.003
 Identities = 22/53 (41%), Positives = 33/53 (62%)

Query: 24  QPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 76
              +T   EA S+ +  ++ DIYS SWGP DDG+ + GP +   +A+V+GV E
Sbjct: 126 SGDITTEDEAASLIYGLDVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTE 178


>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 334

 Score = 31.7 bits (70), Expect = 0.005
 Identities = 30/64 (46%), Positives = 37/64 (57%)

Query: 14  SHDGRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRG 73
           +       +    +TD +EA S+G  PN I IYSASWGP DDGKTVDGP      A  RG
Sbjct: 110 NARIGGVRMLDGEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRG 169

Query: 74  VNEH 77
           V++ 
Sbjct: 170 VSQG 173


>d2pg4a1 a.4.5.48 (A:1-92) Uncharacterized protein APE0880.1
          {Aeropyrum pernix [TaxId: 56636]}
          Length = 92

 Score = 24.2 bits (52), Expect = 1.1
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%)

Query: 6  MQHELLQISHDGRIRMLDQPYMTDLIEANSMGHEPNLIDIYSAS 49
          M  E L++     IR+L       L+E    G+EP+L +I  AS
Sbjct: 1  MDDETLRLQFGHLIRIL-----PTLLEFEKKGYEPSLAEIVKAS 39


>d1jsda_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
          strains [TaxId: 11320]}
          Length = 317

 Score = 23.6 bits (51), Expect = 3.3
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 3  TITMQHELLQISHDGRIRMLDQPYMTDL 30
           +T   ELL  SH+G +   +  +   L
Sbjct: 25 PVTHAKELLHTSHNGMLCATNLGHPLIL 52


>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain
          (RecD) {Escherichia coli [TaxId: 562]}
          Length = 359

 Score = 23.3 bits (49), Expect = 4.3
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 6  MQHELLQISHDGRIRMLD 23
          +Q +LL+     ++R LD
Sbjct: 2  LQKQLLEAVEHKQLRPLD 19


>d2z1aa1 d.114.1.1 (A:330-534) 5'-nucleotidase (syn. UDP-sugar
           hydrolase), C-terminal domain {Thermus thermophilus
           [TaxId: 274]}
          Length = 205

 Score = 22.4 bits (47), Expect = 10.0
 Identities = 5/19 (26%), Positives = 14/19 (73%)

Query: 7   QHELLQISHDGRIRMLDQP 25
           + ++++   +GRI +L++P
Sbjct: 187 ELKVVEAGLEGRIEVLNEP 205


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.396 

Gapped
Lambda     K      H
   0.267   0.0523    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 287,843
Number of extensions: 10762
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 7
Length of query: 78
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 33
Effective length of database: 1,789,746
Effective search space: 59061618
Effective search space used: 59061618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.4 bits)