BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13853
         (108 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1P8J|A Chain A, Crystal Structure Of The Proprotein Convertase Furin
 pdb|1P8J|B Chain B, Crystal Structure Of The Proprotein Convertase Furin
 pdb|1P8J|C Chain C, Crystal Structure Of The Proprotein Convertase Furin
 pdb|1P8J|D Chain D, Crystal Structure Of The Proprotein Convertase Furin
 pdb|1P8J|E Chain E, Crystal Structure Of The Proprotein Convertase Furin
 pdb|1P8J|F Chain F, Crystal Structure Of The Proprotein Convertase Furin
 pdb|1P8J|G Chain G, Crystal Structure Of The Proprotein Convertase Furin
 pdb|1P8J|H Chain H, Crystal Structure Of The Proprotein Convertase Furin
          Length = 471

 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 48  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETR 107
           +RMLD   +TD +EA S+G  PN I IYSASWGP DDGKTVDGP      A  RGV++ R
Sbjct: 117 VRMLDGE-VTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGR 175


>pdb|2ID4|A Chain A, The 1.9 A Structure Of Kex2 In Complex With An
           Ac-R-E-R-K-Chloromethyl Ketone Inhibitor.
 pdb|2ID4|B Chain B, The 1.9 A Structure Of Kex2 In Complex With An
           Ac-R-E-R-K-Chloromethyl Ketone Inhibitor
          Length = 503

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 46  SRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 105
           S IR+L     T+  EA S+ +  ++ DIYS SWGP DDG+ + GP +   +A+V+GV E
Sbjct: 128 SGIRILSGDITTE-DEAASLIYGLDVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTE 186

Query: 106 TR 107
            R
Sbjct: 187 GR 188


>pdb|1R64|A Chain A, The 2.2 A Crystal Structure Of Kex2 Protease In Complex
           With Ac-Arg- Glu-Lys-Boroarg Peptidyl Boronic Acid
           Inhibitor
 pdb|1R64|B Chain B, The 2.2 A Crystal Structure Of Kex2 Protease In Complex
           With Ac-Arg- Glu-Lys-Boroarg Peptidyl Boronic Acid
           Inhibitor
          Length = 481

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 46  SRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 105
           S IR+L     T+  EA S+ +  ++ DIYS SWGP DDG+ + GP +   +A+V+GV E
Sbjct: 121 SGIRILSGDITTE-DEAASLIYGLDVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTE 179

Query: 106 TR 107
            R
Sbjct: 180 GR 181


>pdb|1OT5|A Chain A, The 2.4 Angstrom Crystal Sructure Of Kex2 In Complex With
           A Peptidyl- Boronic Acid Inhibitor
 pdb|1OT5|B Chain B, The 2.4 Angstrom Crystal Sructure Of Kex2 In Complex With
           A Peptidyl- Boronic Acid Inhibitor
          Length = 477

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 46  SRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 105
           S IR+L     T+  EA S+ +  ++ DIYS SWGP DDG+ + GP +   +A+V+GV E
Sbjct: 119 SGIRILSGDITTE-DEAASLIYGLDVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTE 177

Query: 106 TR 107
            R
Sbjct: 178 GR 179


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.133    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,252,362
Number of Sequences: 62578
Number of extensions: 109933
Number of successful extensions: 185
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 181
Number of HSP's gapped (non-prelim): 4
length of query: 108
length of database: 14,973,337
effective HSP length: 72
effective length of query: 36
effective length of database: 10,467,721
effective search space: 376837956
effective search space used: 376837956
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)