Query psy13853
Match_columns 108
No_of_seqs 118 out of 273
Neff 3.9
Searched_HMMs 46136
Date Fri Aug 16 22:05:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13853.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13853hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3526|consensus 100.0 1.7E-32 3.7E-37 233.6 6.4 95 5-108 206-300 (629)
2 KOG3525|consensus 99.8 1.3E-20 2.8E-25 158.4 3.0 89 10-108 83-171 (431)
3 cd04059 Peptidases_S8_Protein_ 98.9 2.5E-09 5.5E-14 82.1 7.2 86 12-107 89-174 (297)
4 cd07483 Peptidases_S8_Subtilis 98.2 1.1E-06 2.4E-11 69.0 4.2 82 11-106 89-171 (291)
5 cd07496 Peptidases_S8_13 Pepti 98.0 8.3E-06 1.8E-10 63.1 5.2 81 11-106 75-166 (285)
6 cd07497 Peptidases_S8_14 Pepti 97.9 1.5E-05 3.2E-10 64.3 5.2 80 12-91 61-151 (311)
7 cd07474 Peptidases_S8_subtilis 97.8 1.6E-05 3.5E-10 60.9 3.7 82 11-106 66-149 (295)
8 cd07481 Peptidases_S8_Bacillop 97.8 4.6E-05 1E-09 58.3 6.0 63 12-84 57-132 (264)
9 cd04843 Peptidases_S8_11 Pepti 97.8 6E-05 1.3E-09 59.5 6.6 84 12-106 56-142 (277)
10 cd07487 Peptidases_S8_1 Peptid 97.7 5.8E-05 1.3E-09 56.5 4.1 84 12-106 49-138 (264)
11 cd07493 Peptidases_S8_9 Peptid 97.7 7.6E-05 1.6E-09 56.9 4.7 83 12-106 52-147 (261)
12 cd07473 Peptidases_S8_Subtilis 97.6 7.5E-05 1.6E-09 56.2 4.2 79 12-106 68-148 (259)
13 cd07490 Peptidases_S8_6 Peptid 97.6 6.8E-05 1.5E-09 56.3 3.5 77 12-101 48-125 (254)
14 cd04848 Peptidases_S8_Autotran 97.6 0.0001 2.2E-09 54.5 4.4 85 12-106 51-146 (267)
15 cd07498 Peptidases_S8_15 Pepti 97.4 0.00021 4.6E-09 53.4 4.3 81 12-104 45-127 (242)
16 cd07480 Peptidases_S8_12 Pepti 97.2 0.0003 6.4E-09 55.0 3.5 66 12-87 51-118 (297)
17 cd07482 Peptidases_S8_Lantibio 97.2 0.00034 7.4E-09 53.3 3.6 82 12-106 58-145 (294)
18 cd07494 Peptidases_S8_10 Pepti 97.2 0.00085 1.8E-08 53.5 5.7 79 25-106 60-145 (298)
19 cd07489 Peptidases_S8_5 Peptid 97.1 0.00052 1.1E-08 53.8 3.6 62 12-83 73-136 (312)
20 PTZ00262 subtilisin-like prote 97.0 0.0007 1.5E-08 60.7 3.8 79 12-106 383-463 (639)
21 cd07475 Peptidases_S8_C5a_Pept 96.9 0.00096 2.1E-08 52.6 3.9 83 12-106 87-176 (346)
22 cd04842 Peptidases_S8_Kp43_pro 96.8 0.0018 3.8E-08 49.5 4.1 68 12-85 59-129 (293)
23 cd07484 Peptidases_S8_Thermita 96.6 0.0026 5.5E-08 48.2 3.8 78 13-106 74-153 (260)
24 cd07476 Peptidases_S8_thiazoli 96.6 0.0027 5.9E-08 49.8 4.0 67 37-106 69-138 (267)
25 cd07492 Peptidases_S8_8 Peptid 96.5 0.0016 3.5E-08 48.3 2.2 77 25-106 43-121 (222)
26 cd07485 Peptidases_S8_Fervidol 96.5 0.0032 6.9E-08 48.5 3.7 87 12-105 66-154 (273)
27 cd05561 Peptidases_S8_4 Peptid 96.4 0.0042 9E-08 47.6 3.9 75 12-106 41-120 (239)
28 PF00082 Peptidase_S8: Subtila 96.4 0.0012 2.7E-08 49.5 0.8 85 12-106 51-138 (282)
29 cd07479 Peptidases_S8_SKI-1_li 96.3 0.0063 1.4E-07 47.1 4.3 60 12-83 50-111 (255)
30 cd00306 Peptidases_S8_S53 Pept 96.0 0.016 3.5E-07 41.1 5.1 80 11-105 48-130 (241)
31 cd07477 Peptidases_S8_Subtilis 96.0 0.0099 2.1E-07 43.7 4.1 76 12-106 45-124 (229)
32 cd07491 Peptidases_S8_7 Peptid 95.3 0.018 4E-07 44.7 3.3 81 25-106 48-136 (247)
33 cd04077 Peptidases_S8_PCSK9_Pr 94.8 0.039 8.4E-07 41.7 3.9 61 38-106 79-146 (255)
34 cd04852 Peptidases_S8_3 Peptid 94.5 0.08 1.7E-06 41.5 5.1 47 37-83 137-185 (307)
35 cd04857 Peptidases_S8_Tripepti 93.0 0.051 1.1E-06 46.4 1.5 60 12-81 190-254 (412)
36 cd04847 Peptidases_S8_Subtilis 88.8 0.27 5.9E-06 38.1 1.9 64 12-84 43-115 (291)
37 cd04056 Peptidases_S53 Peptida 85.9 1.4 3E-05 36.0 4.5 68 37-106 84-153 (361)
38 cd05562 Peptidases_S53_like Pe 83.4 1.7 3.6E-05 34.4 3.8 41 37-81 59-100 (275)
39 cd07478 Peptidases_S8_CspA-lik 79.6 2.2 4.7E-05 36.4 3.4 62 12-82 83-161 (455)
40 PF03497 Anthrax_toxA: Anthrax 51.2 3 6.5E-05 32.6 -1.2 36 45-82 33-68 (179)
41 TIGR02133 RPI_actino ribose 5- 40.9 11 0.00024 28.2 0.4 29 25-62 65-93 (148)
42 KOG3052|consensus 39.6 11 0.00024 31.7 0.3 42 47-95 116-157 (311)
43 PF11688 DUF3285: Protein of u 37.2 33 0.00072 21.5 2.1 19 90-108 3-21 (45)
44 PRK08621 galactose-6-phosphate 36.7 11 0.00024 28.2 -0.1 30 25-63 62-91 (142)
45 smart00162 SAPA Saposin/surfac 35.1 16 0.00036 21.5 0.5 8 76-83 4-11 (34)
46 COG1404 AprE Subtilisin-like s 34.2 1.1E+02 0.0024 23.9 5.0 82 12-106 188-275 (508)
47 PF14443 DBC1: DBC1 33.6 45 0.00097 24.8 2.7 26 76-101 23-49 (126)
48 TIGR01118 lacA galactose-6-pho 33.1 12 0.00026 28.0 -0.4 29 25-62 62-90 (141)
49 PRK12613 galactose-6-phosphate 31.7 13 0.00028 27.8 -0.4 29 25-62 61-89 (141)
50 PF10396 TrmE_N: GTP-binding p 30.8 23 0.0005 25.5 0.8 18 85-102 96-113 (114)
51 PF12609 DUF3774: Wound-induce 26.4 32 0.00069 23.2 0.8 8 74-81 72-79 (79)
52 PF02199 SapA: Saposin A-type 24.6 35 0.00076 19.8 0.6 8 76-83 4-11 (34)
53 PF15566 Imm18: Immunity prote 22.1 13 0.00027 23.9 -1.7 14 68-81 19-32 (52)
54 TIGR01119 lacB galactose-6-pho 21.9 15 0.00034 28.3 -1.6 29 25-62 64-92 (171)
55 TIGR01120 rpiB ribose 5-phosph 21.8 14 0.00031 27.5 -1.7 31 25-64 63-93 (143)
56 PRK05571 ribose-5-phosphate is 21.7 15 0.00032 27.6 -1.7 30 25-63 65-94 (148)
57 PF09163 Form-deh_trans: Forma 20.7 48 0.001 20.5 0.7 13 6-18 26-38 (44)
58 PRK08622 galactose-6-phosphate 20.5 17 0.00036 28.1 -1.7 30 25-63 64-93 (171)
No 1
>KOG3526|consensus
Probab=99.97 E-value=1.7e-32 Score=233.55 Aligned_cols=95 Identities=63% Similarity=0.890 Sum_probs=87.9
Q ss_pred hhhhhhhhhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCCChHhhhhhccCCCCcccEEeCCCCCCCC
Q psy13853 5 WASVYHYLTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDD 84 (108)
Q Consensus 5 ~~~~~~~~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~EA~ALsy~~~~iDIYScSWGP~Dd 84 (108)
|-.-.---|||||++.+||.+|||| |+| ++||+||||||+|++||++||.+++|.++.|||||+||||.||
T Consensus 206 wfnshgtrcagev~aardngicgvg-------vay--dskvagirmldqpymtdlieansmghep~kihiysaswgptdd 276 (629)
T KOG3526|consen 206 WFNSHGTRCAGEVVAARDNGICGVG-------VAY--DSKVAGIRMLDQPYMTDLIEANSMGHEPSKIHIYSASWGPTDD 276 (629)
T ss_pred hhhccCccccceeeeeccCCceeee-------eee--ccccceeeecCCchhhhhhhhcccCCCCceEEEEecccCcCCC
Confidence 3333334699999999999999976 666 8999999999999999999999999999999999999999999
Q ss_pred CCcccCcHHHHHHHHHHHHhccCC
Q psy13853 85 GKTVDGPRNATMRAIVRGVNETRT 108 (108)
Q Consensus 85 G~tvdgP~~L~~~Al~~Gv~~GRn 108 (108)
|||||||..++.+||..||++|||
T Consensus 277 gktvdgprnatmraiv~gvnegrn 300 (629)
T KOG3526|consen 277 GKTVDGPRNATMRAIVRGVNEGRN 300 (629)
T ss_pred CcccCCchhHHHHHHHHhhhcccC
Confidence 999999999999999999999997
No 2
>KOG3525|consensus
Probab=99.80 E-value=1.3e-20 Score=158.41 Aligned_cols=89 Identities=38% Similarity=0.518 Sum_probs=83.6
Q ss_pred hhhhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCCChHhhhhhccCCCCcccEEeCCCCCCCCCCccc
Q psy13853 10 HYLTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVD 89 (108)
Q Consensus 10 ~~~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~EA~ALsy~~~~iDIYScSWGP~DdG~tvd 89 (108)
+-.|+|++|+.+||..|++| +++ +++++|+|||++ .++|.+|+.++.|.++++|||||||||+|||+|++
T Consensus 83 g~~Ca~~~a~~~~~~~C~vg-------~~~--~~~~~g~~~l~~-~v~~~~~~~~~~~~~~~~di~scsw~pddd~~t~~ 152 (431)
T KOG3525|consen 83 GTRCAGCVAARANNLTCGVG-------VAY--NATIGGIRMLAG-CVSDAVEAPSLGFGPCHIDIYSCSWGPDDDGKTCD 152 (431)
T ss_pred CCCCCcccccccCCCcCCCC-------ccc--Cccccceeeeee-ecccceecccccCCCCCceeecCcCCcccCCCcCC
Confidence 45899999999999999987 544 788999999999 59999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhccCC
Q psy13853 90 GPRNATMRAIVRGVNETRT 108 (108)
Q Consensus 90 gP~~L~~~Al~~Gv~~GRn 108 (108)
+|..|.++|+++++..||.
T Consensus 153 ~~~~l~~~~~~~~~~~g~~ 171 (431)
T KOG3525|consen 153 GPGTLAREALVYGRGCGRH 171 (431)
T ss_pred CCcchhhhhhhcccccccc
Confidence 9999999999999999984
No 3
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=98.95 E-value=2.5e-09 Score=82.05 Aligned_cols=86 Identities=45% Similarity=0.651 Sum_probs=75.3
Q ss_pred hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCCChHhhhhhccCCCCcccEEeCCCCCCCCCCcccCc
Q psy13853 12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGP 91 (108)
Q Consensus 12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~EA~ALsy~~~~iDIYScSWGP~DdG~tvdgP 91 (108)
.+||.|+...+|..|..| +||+|+|..+|+++. ..++..++.++.+..+.+||.+.|||+......+++|
T Consensus 89 ~vAgiiag~~~~~~~~~G---------vAp~a~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~ 158 (297)
T cd04059 89 RCAGEIAAVGNNGICGVG---------VAPGAKLGGIRMLDG-DVTDVVEAESLGLNPDYIDIYSNSWGPDDDGKTVDGP 158 (297)
T ss_pred ceeeEEEeecCCCccccc---------ccccceEeEEEecCC-ccccHHHHHHHhcccCCceEEECCCCCCCCCCccCCC
Confidence 467888887777666644 788999999999999 4899999999999999999999999998888888999
Q ss_pred HHHHHHHHHHHHhccC
Q psy13853 92 RNATMRAIVRGVNETR 107 (108)
Q Consensus 92 ~~L~~~Al~~Gv~~GR 107 (108)
..+..+|+++.++++|
T Consensus 159 ~~~~~~a~~~a~~~~~ 174 (297)
T cd04059 159 GPLAQRALENGVTNGR 174 (297)
T ss_pred cHHHHHHHHHHHHhCC
Confidence 9999999999998765
No 4
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=98.24 E-value=1.1e-06 Score=68.98 Aligned_cols=82 Identities=13% Similarity=-0.048 Sum_probs=60.2
Q ss_pred hhhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCCChHhhhhhccCCC-CcccEEeCCCCCCCCCCccc
Q psy13853 11 YLTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVD 89 (108)
Q Consensus 11 ~~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~tvd 89 (108)
-.|||.|+...+|..+. .+++|++||..+|+++....++...++|+.|.. +.++|.++|||... .
T Consensus 89 T~VAGiIaa~~~n~~g~---------~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN~S~G~~~-----~ 154 (291)
T cd07483 89 THVAGIIAAVRDNGIGI---------DGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVINMSFGKSF-----S 154 (291)
T ss_pred HHHHHHHhCcCCCCCce---------EEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEEeCCCCCC-----C
Confidence 36899999999887665 447889999999999643456666778888765 47999999999632 1
Q ss_pred CcHHHHHHHHHHHHhcc
Q psy13853 90 GPRNATMRAIVRGVNET 106 (108)
Q Consensus 90 gP~~L~~~Al~~Gv~~G 106 (108)
......++|+++..++|
T Consensus 155 ~~~~~~~~ai~~a~~~g 171 (291)
T cd07483 155 PNKEWVDDAIKYAESKG 171 (291)
T ss_pred CccHHHHHHHHHHHhCC
Confidence 12345667777776665
No 5
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=98.04 E-value=8.3e-06 Score=63.08 Aligned_cols=81 Identities=15% Similarity=-0.055 Sum_probs=57.4
Q ss_pred hhhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCCChHhhhhhccCC-----------CCcccEEeCCC
Q psy13853 11 YLTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEANSMGHE-----------PNLIDIYSASW 79 (108)
Q Consensus 11 ~~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~EA~ALsy~-----------~~~iDIYScSW 79 (108)
-.|||.|+...+|..+-. ++||+|||..+|+++...-+..+-++|+.|. .+.++|.++||
T Consensus 75 T~vAgiiaa~~~~~~~~~---------GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~Iin~S~ 145 (285)
T cd07496 75 THVAGTIAAVTNNGVGVA---------GVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSL 145 (285)
T ss_pred HHHHHHHhCcCCCCCCce---------eecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCCCeEEEeCC
Confidence 468999999888776654 4678999999999975322334445555443 46789999999
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHHhcc
Q psy13853 80 GPTDDGKTVDGPRNATMRAIVRGVNET 106 (108)
Q Consensus 80 GP~DdG~tvdgP~~L~~~Al~~Gv~~G 106 (108)
|..... ....++|+.....+|
T Consensus 146 G~~~~~------~~~~~~ai~~a~~~G 166 (285)
T cd07496 146 GGDGAC------SATMQNAINDVRARG 166 (285)
T ss_pred CCCCCC------CHHHHHHHHHHHHCC
Confidence 985432 345667888777766
No 6
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=97.95 E-value=1.5e-05 Score=64.28 Aligned_cols=80 Identities=14% Similarity=-0.039 Sum_probs=46.4
Q ss_pred hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCCC--hHh--------hhhhccCC-CCcccEEeCCCC
Q psy13853 12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMT--DLI--------EANSMGHE-PNLIDIYSASWG 80 (108)
Q Consensus 12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vt--d~~--------EA~ALsy~-~~~iDIYScSWG 80 (108)
-|||.||...++.....+.--....+++||+|||.++|+|+..... ... .+.++.|. .+.+||.|+|||
T Consensus 61 hvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G 140 (311)
T cd07497 61 SCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWG 140 (311)
T ss_pred hHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCC
Confidence 4899999876543221100000123678999999999999521122 111 12334443 468999999999
Q ss_pred CCCCCCcccCc
Q psy13853 81 PTDDGKTVDGP 91 (108)
Q Consensus 81 P~DdG~tvdgP 91 (108)
......+...|
T Consensus 141 ~~~~~~~~~~~ 151 (311)
T cd07497 141 ISNFAYTGYAP 151 (311)
T ss_pred cCCCCcccccc
Confidence 86654433333
No 7
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=97.85 E-value=1.6e-05 Score=60.88 Aligned_cols=82 Identities=15% Similarity=0.076 Sum_probs=56.9
Q ss_pred hhhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCC-CCCChHhhhhhccCCC-CcccEEeCCCCCCCCCCcc
Q psy13853 11 YLTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQ-PYMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTV 88 (108)
Q Consensus 11 ~~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g-~~vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~tv 88 (108)
-.|||.|+...+|..+- .+++|+++|-.+|+++. ...++..-..++.+.. +.+||+++|||..+..
T Consensus 66 T~vAgiiag~~~n~~~~---------~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~~~--- 133 (295)
T cd07474 66 THVAGIIAGNGVNVGTI---------KGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVNG--- 133 (295)
T ss_pred HHHHHHHhcCCCccCce---------EeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCC---
Confidence 35889999888885554 34788999999999962 1344444445555543 4899999999986544
Q ss_pred cCcHHHHHHHHHHHHhcc
Q psy13853 89 DGPRNATMRAIVRGVNET 106 (108)
Q Consensus 89 dgP~~L~~~Al~~Gv~~G 106 (108)
+.....+++++..++|
T Consensus 134 --~~~~~~~~~~~~~~~g 149 (295)
T cd07474 134 --PDDPDAIAINNAVKAG 149 (295)
T ss_pred --CCCHHHHHHHHHHhcC
Confidence 4445667777777665
No 8
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=97.83 E-value=4.6e-05 Score=58.34 Aligned_cols=63 Identities=14% Similarity=0.050 Sum_probs=42.6
Q ss_pred hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCC--ChHhhhhhccC-----------CCCcccEEeCC
Q psy13853 12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYM--TDLIEANSMGH-----------EPNLIDIYSAS 78 (108)
Q Consensus 12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~v--td~~EA~ALsy-----------~~~~iDIYScS 78 (108)
.++|.|+...++..| .| ++|+++|..+|+++.... .+..++..+.. ..+.+||.++|
T Consensus 57 ~vagii~g~~~~~~~-~G---------vAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S 126 (264)
T cd07481 57 HTMGTMVGNDGDGQQ-IG---------VAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNS 126 (264)
T ss_pred hhhhheeecCCCCCc-eE---------ECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeC
Confidence 568888877666555 44 688999999999986322 23333332222 12568999999
Q ss_pred CCCCCC
Q psy13853 79 WGPTDD 84 (108)
Q Consensus 79 WGP~Dd 84 (108)
||....
T Consensus 127 ~G~~~~ 132 (264)
T cd07481 127 WGGPSG 132 (264)
T ss_pred CCcCCC
Confidence 998765
No 9
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=97.81 E-value=6e-05 Score=59.53 Aligned_cols=84 Identities=13% Similarity=0.015 Sum_probs=53.3
Q ss_pred hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCCChHhhhhhccCC-CCcccEEeCCCCCCCCCCccc-
Q psy13853 12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEANSMGHE-PNLIDIYSASWGPTDDGKTVD- 89 (108)
Q Consensus 12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~EA~ALsy~-~~~iDIYScSWGP~DdG~tvd- 89 (108)
.|||.|++. +|.++. ++++|+++|..+|+++...+.+.++ .|+.|. ...+.+.|.|||..++.....
T Consensus 56 ~VAGiIaa~-~n~~G~---------~GvAp~a~l~~i~v~~~~~~~~ai~-~A~~~~~~~~v~~in~s~g~~~~~~~~~p 124 (277)
T cd04843 56 AVLGIIVAK-DNGIGV---------TGIAHGAQAAVVSSTRVSNTADAIL-DAADYLSPGDVILLEMQTGGPNNGYPPLP 124 (277)
T ss_pred hhheeeeee-cCCCce---------eeeccCCEEEEEEecCCCCHHHHHH-HHHhccCCCCEEEEEccccCCCcCcccCc
Confidence 579999985 676765 4578899999999996212333333 334432 345678899999987665432
Q ss_pred -CcHHHHHHHHHHHHhcc
Q psy13853 90 -GPRNATMRAIVRGVNET 106 (108)
Q Consensus 90 -gP~~L~~~Al~~Gv~~G 106 (108)
.+.....+|+++..++|
T Consensus 125 ~~~~~~~~~av~~a~~~G 142 (277)
T cd04843 125 VEYEQANFDAIRTATDLG 142 (277)
T ss_pred chhhHHHHHHHHHHHhCC
Confidence 12223345777766555
No 10
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=97.66 E-value=5.8e-05 Score=56.50 Aligned_cols=84 Identities=14% Similarity=0.061 Sum_probs=53.0
Q ss_pred hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCC---CCChHhhhhhccCCC---CcccEEeCCCCCCCCC
Q psy13853 12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQP---YMTDLIEANSMGHEP---NLIDIYSASWGPTDDG 85 (108)
Q Consensus 12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~---~vtd~~EA~ALsy~~---~~iDIYScSWGP~DdG 85 (108)
.|||.|+...+|+ +.+ ..+++|+++|-.+|+++.. ..++..+|.....+. ..++|++.|||..++.
T Consensus 49 ~vAgiiag~~~~~--~~~------~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~ 120 (264)
T cd07487 49 HVAGIIAGSGRAS--NGK------YKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDP 120 (264)
T ss_pred HHHHHHhcCCccc--CCc------eEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCC
Confidence 5889998888774 111 2567899999999999863 123333333322232 2799999999987754
Q ss_pred CcccCcHHHHHHHHHHHHhcc
Q psy13853 86 KTVDGPRNATMRAIVRGVNET 106 (108)
Q Consensus 86 ~tvdgP~~L~~~Al~~Gv~~G 106 (108)
........+++++..++|
T Consensus 121 ---~~~~~~~~~~~~~~~~~g 138 (264)
T cd07487 121 ---SYGEDPLCQAVERLWDAG 138 (264)
T ss_pred ---CCCCCHHHHHHHHHHhCC
Confidence 122234455666665554
No 11
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=97.65 E-value=7.6e-05 Score=56.94 Aligned_cols=83 Identities=16% Similarity=0.039 Sum_probs=54.5
Q ss_pred hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCCChHhh----hhhccCCC-CcccEEeCCCCCCCCCC
Q psy13853 12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIE----ANSMGHEP-NLIDIYSASWGPTDDGK 86 (108)
Q Consensus 12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~E----A~ALsy~~-~~iDIYScSWGP~DdG~ 86 (108)
.++|.|+...++.. ++++|++++-.+|+.+.+ .....+ +.++.|.. +.+||+++|||..+...
T Consensus 52 ~vagiia~~~~~~~-----------~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~ 119 (261)
T cd07493 52 AVLSTMAGYTPGVM-----------VGTAPNASYYLARTEDVA-SETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDN 119 (261)
T ss_pred hhheeeeeCCCCCE-----------EEeCCCCEEEEEEecccC-CcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCC
Confidence 37788888665422 446789999999987653 322222 34555533 57999999999765433
Q ss_pred c--------ccCcHHHHHHHHHHHHhcc
Q psy13853 87 T--------VDGPRNATMRAIVRGVNET 106 (108)
Q Consensus 87 t--------vdgP~~L~~~Al~~Gv~~G 106 (108)
. ++++.....+|+++..++|
T Consensus 120 ~~~~~~~~~~~~~~~~l~~a~~~a~~~g 147 (261)
T cd07493 120 PTYSYTYADMDGKTSFISRAANIAASKG 147 (261)
T ss_pred cccccccccccccchHHHHHHHHHHhCC
Confidence 2 4455555667888777766
No 12
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=97.61 E-value=7.5e-05 Score=56.19 Aligned_cols=79 Identities=15% Similarity=0.016 Sum_probs=54.0
Q ss_pred hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCC-CChHhhhhhccCCC-CcccEEeCCCCCCCCCCccc
Q psy13853 12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPY-MTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVD 89 (108)
Q Consensus 12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~-vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~tvd 89 (108)
.+||.|+...+|..+.. +++|+|+|-.+|+++... .+...-.++|.|.. +.++|.+.|||....
T Consensus 68 ~va~ii~~~~~~~~~~~---------GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~----- 133 (259)
T cd07473 68 HVAGIIGAVGNNGIGIA---------GVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP----- 133 (259)
T ss_pred HHHHHHHCcCCCCCceE---------EeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC-----
Confidence 57888888777776643 468899999999998842 22222334444432 689999999998655
Q ss_pred CcHHHHHHHHHHHHhcc
Q psy13853 90 GPRNATMRAIVRGVNET 106 (108)
Q Consensus 90 gP~~L~~~Al~~Gv~~G 106 (108)
.....+++++...+|
T Consensus 134 --~~~~~~~~~~~~~~g 148 (259)
T cd07473 134 --SQALRDAIARAIDAG 148 (259)
T ss_pred --CHHHHHHHHHHHhCC
Confidence 334566777766654
No 13
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=97.58 E-value=6.8e-05 Score=56.26 Aligned_cols=77 Identities=14% Similarity=-0.012 Sum_probs=50.0
Q ss_pred hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCCChHhhhhhccCCC-CcccEEeCCCCCCCCCCcccC
Q psy13853 12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDG 90 (108)
Q Consensus 12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~tvdg 90 (108)
.|||.|+...+| .+. .+++|+++|-.+|+++....+...-.+++.|.. +.+||+++|||..+.. ..
T Consensus 48 ~vAgiia~~~~~-~~~---------~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~---~~ 114 (254)
T cd07490 48 HVSGTIGGGGAK-GVY---------IGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS---ED 114 (254)
T ss_pred HHHHHHhcCCCC-CCE---------EEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC---Cc
Confidence 468888876663 344 457889999999999873222333344555443 5799999999987755 34
Q ss_pred cHHHHHHHHHH
Q psy13853 91 PRNATMRAIVR 101 (108)
Q Consensus 91 P~~L~~~Al~~ 101 (108)
|-....+++.+
T Consensus 115 ~~~~~~~~~~~ 125 (254)
T cd07490 115 PLEEAVEALSN 125 (254)
T ss_pred HHHHHHHHHHH
Confidence 44334444444
No 14
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=97.58 E-value=0.0001 Score=54.51 Aligned_cols=85 Identities=16% Similarity=0.095 Sum_probs=55.4
Q ss_pred hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCC--CCChHhhhhhccCCC-CcccEEeCCCCCCCCCCcc
Q psy13853 12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQP--YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTV 88 (108)
Q Consensus 12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~--~vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~tv 88 (108)
.|+|.|+...+| .+. .+++|+++|-.+|+++.+ ..++....+++.+.. +.+||++.|||+.+.....
T Consensus 51 ~vagiiag~~~~-~~~---------~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~ 120 (267)
T cd04848 51 HVAGVIAAARDG-GGM---------HGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTV 120 (267)
T ss_pred HHHHHHhcCcCC-CCc---------ccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCccccc
Confidence 577888776666 443 457899999999999873 123333344444433 4799999999998866543
Q ss_pred c--------CcHHHHHHHHHHHHhcc
Q psy13853 89 D--------GPRNATMRAIVRGVNET 106 (108)
Q Consensus 89 d--------gP~~L~~~Al~~Gv~~G 106 (108)
+ ....+..++++...++|
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~g 146 (267)
T cd04848 121 STTYKGSAATQGNTLLAALARAANAG 146 (267)
T ss_pred ccchhhhccccchHHHHHHHHHhhCC
Confidence 3 23334555666555554
No 15
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=97.42 E-value=0.00021 Score=53.40 Aligned_cols=81 Identities=20% Similarity=0.101 Sum_probs=52.4
Q ss_pred hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCC-CCChHhhhhhccCCC-CcccEEeCCCCCCCCCCccc
Q psy13853 12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQP-YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVD 89 (108)
Q Consensus 12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~-~vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~tvd 89 (108)
.+||.|+...+|..+- .+++|+++|..+|+++.+ ..+...-++++.|.. +.+||.++|||..+...
T Consensus 45 ~vAgiiag~~~~~~~~---------~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~--- 112 (242)
T cd07498 45 ACAGVAAAVGNNGLGV---------AGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTE--- 112 (242)
T ss_pred HHHHHHHhccCCCcee---------EeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCc---
Confidence 4677787776665544 457899999999999874 123444455666654 57999999999866432
Q ss_pred CcHHHHHHHHHHHHh
Q psy13853 90 GPRNATMRAIVRGVN 104 (108)
Q Consensus 90 gP~~L~~~Al~~Gv~ 104 (108)
.......+++.++.+
T Consensus 113 ~~~~~~~~~~~~~~~ 127 (242)
T cd07498 113 SISSAIDNAATYGRN 127 (242)
T ss_pred hHHHHHHHHHHHHhh
Confidence 112233345555544
No 16
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=97.24 E-value=0.0003 Score=55.00 Aligned_cols=66 Identities=14% Similarity=-0.162 Sum_probs=46.0
Q ss_pred hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCC-CCChHhhhhhccCCC-CcccEEeCCCCCCCCCCc
Q psy13853 12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQP-YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKT 87 (108)
Q Consensus 12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~-~vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~t 87 (108)
.++|.|+...+| .|++ ++||+|+|-.+|++.++ ...+..-++++.|.. +..||+++|||...+|..
T Consensus 51 ~VAgiiag~~~~-~~~~---------GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~ 118 (297)
T cd07480 51 HCAGTIFGRDVP-GPRY---------GVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLV 118 (297)
T ss_pred HHHHHHhcccCC-Cccc---------ccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccc
Confidence 478888876655 4553 46889999999998653 233333455666554 467999999999887653
No 17
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=97.22 E-value=0.00034 Score=53.30 Aligned_cols=82 Identities=11% Similarity=-0.085 Sum_probs=48.1
Q ss_pred hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCC-ChHhhhhhccCCC-CcccEEeCCCCCCCCCCccc
Q psy13853 12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYM-TDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVD 89 (108)
Q Consensus 12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~v-td~~EA~ALsy~~-~~iDIYScSWGP~DdG~tvd 89 (108)
.|||.|+...++. ++||+|+|..+|+++.... +...-.+++.+.. +.++|.+.|||........+
T Consensus 58 ~vAgiia~~~~~~-------------GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~ 124 (294)
T cd07482 58 AVAGQIAANGNIK-------------GVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEY 124 (294)
T ss_pred HHHHHHhcCCCCc-------------eeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCccc
Confidence 4567776644332 4688999999999987412 2233334454443 46999999999765443322
Q ss_pred ----CcHHHHHHHHHHHHhcc
Q psy13853 90 ----GPRNATMRAIVRGVNET 106 (108)
Q Consensus 90 ----gP~~L~~~Al~~Gv~~G 106 (108)
.....-.+|+....++|
T Consensus 125 ~~~~~~~~~~~~~i~~a~~~g 145 (294)
T cd07482 125 EDDDVEYNAYKKAINYAKSKG 145 (294)
T ss_pred ccchhhhHHHHHHHHHHHHCC
Confidence 11122344555554444
No 18
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=97.19 E-value=0.00085 Score=53.45 Aligned_cols=79 Identities=14% Similarity=0.065 Sum_probs=51.5
Q ss_pred ccccceeeeeEEEEeccCCcccceeecCCCCCChHhhhhhccCCC-CcccEEeCCCCCCCCCC------cccCcHHHHHH
Q psy13853 25 HLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEANSMGHEP-NLIDIYSASWGPTDDGK------TVDGPRNATMR 97 (108)
Q Consensus 25 ~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~------tvdgP~~L~~~ 97 (108)
-+|+|.-++-...++||+++|..+|+++. ...+..++ |.|.. +..||.|.|||...+.. .+........+
T Consensus 60 ~~gHGT~vag~i~GvAP~a~i~~vkv~~~-~~~~~~~a--i~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ 136 (298)
T cd07494 60 ENGHGTGESANLFAIAPGAQFIGVKLGGP-DLVNSVGA--FKKAISLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAA 136 (298)
T ss_pred CCCcchheeeceeEeCCCCeEEEEEccCC-CcHHHHHH--HHHHHhcCCCEEEeecccCCCCcccccccccchhhHHHHH
Confidence 34777655444578999999999999987 35555444 33432 68999999999743221 12222334556
Q ss_pred HHHHHHhcc
Q psy13853 98 AIVRGVNET 106 (108)
Q Consensus 98 Al~~Gv~~G 106 (108)
|+++.+++|
T Consensus 137 ai~~A~~~G 145 (298)
T cd07494 137 TLQDAVARG 145 (298)
T ss_pred HHHHHHHCC
Confidence 777776665
No 19
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=97.10 E-value=0.00052 Score=53.77 Aligned_cols=62 Identities=15% Similarity=0.066 Sum_probs=43.8
Q ss_pred hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCC-CCChHhhhhhccCCC-CcccEEeCCCCCCC
Q psy13853 12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQP-YMTDLIEANSMGHEP-NLIDIYSASWGPTD 83 (108)
Q Consensus 12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~-~vtd~~EA~ALsy~~-~~iDIYScSWGP~D 83 (108)
.|||.|+...+| +++ .++||+++|-.+|+++.+ ..+...-+.++.+.. +.+||.++|||...
T Consensus 73 ~vAgiia~~~~~--~~~--------~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~~ 136 (312)
T cd07489 73 HVAGIIAANPNA--YGF--------TGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGGPS 136 (312)
T ss_pred HHHHHHhcCCCC--Cce--------EEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCcCC
Confidence 688888887777 332 467889999999999732 233333445555544 58999999999644
No 20
>PTZ00262 subtilisin-like protease; Provisional
Probab=96.99 E-value=0.0007 Score=60.74 Aligned_cols=79 Identities=8% Similarity=-0.180 Sum_probs=55.3
Q ss_pred hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCC-CCChHhhhhhccCCC-CcccEEeCCCCCCCCCCccc
Q psy13853 12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQP-YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVD 89 (108)
Q Consensus 12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~-~vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~tvd 89 (108)
.+||.||+..||.... +|+||+|+|..+|+|+.. .-+..+-+.|+.|.. +.++|.++|||...
T Consensus 383 HVAGIIAA~gnN~~Gi---------~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINmSlG~~~------ 447 (639)
T PTZ00262 383 HVSGIISAIGNNNIGI---------VGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMINGSFSFDE------ 447 (639)
T ss_pred HHHHHHhccccCCCce---------eeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEeccccCC------
Confidence 5899999988886644 446889999999999852 123333356666654 48999999998532
Q ss_pred CcHHHHHHHHHHHHhcc
Q psy13853 90 GPRNATMRAIVRGVNET 106 (108)
Q Consensus 90 gP~~L~~~Al~~Gv~~G 106 (108)
......+|+.+..++|
T Consensus 448 -~s~~l~~AV~~A~~kG 463 (639)
T PTZ00262 448 -YSGIFNESVKYLEEKG 463 (639)
T ss_pred -ccHHHHHHHHHHHHCC
Confidence 2234567777776665
No 21
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=96.95 E-value=0.00096 Score=52.62 Aligned_cols=83 Identities=11% Similarity=-0.017 Sum_probs=54.7
Q ss_pred hhhceeeccccC---CccccceeeeeEEEEeccCCcccceeecCC---CCCChHhhhhhccCCC-CcccEEeCCCCCCCC
Q psy13853 12 LTVLEIPLDAQN---PHLGSFRVLSFVVTTLHSRHVSSRIRMLDQ---PYMTDLIEANSMGHEP-NLIDIYSASWGPTDD 84 (108)
Q Consensus 12 ~~~geia~~~nN---~~cgvg~~~~f~~va~a~~AkI~GIRmL~g---~~vtd~~EA~ALsy~~-~~iDIYScSWGP~Dd 84 (108)
.+||.|+...+| ..+. .+++|+|+|-.+|+++. ...++..-..++.+.. +.+||.++|||...+
T Consensus 87 ~vagiiag~~~~~~~~~~~---------~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~ 157 (346)
T cd07475 87 HVAGIVAGNGDEEDNGEGI---------KGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGSTAG 157 (346)
T ss_pred HHHHHHhcCCCccccCCce---------EEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCC
Confidence 578888887776 2344 44788999999999973 1233333334444333 478999999998655
Q ss_pred CCcccCcHHHHHHHHHHHHhcc
Q psy13853 85 GKTVDGPRNATMRAIVRGVNET 106 (108)
Q Consensus 85 G~tvdgP~~L~~~Al~~Gv~~G 106 (108)
.. .+..+..+|+++..++|
T Consensus 158 ~~---~~~~~~~~~~~~a~~~g 176 (346)
T cd07475 158 FV---DLDDPEQQAIKRAREAG 176 (346)
T ss_pred CC---CCCCHHHHHHHHHhhCC
Confidence 43 34445667777776665
No 22
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=96.79 E-value=0.0018 Score=49.51 Aligned_cols=68 Identities=12% Similarity=-0.056 Sum_probs=46.1
Q ss_pred hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCC--CChHhhhhhccCCC-CcccEEeCCCCCCCCC
Q psy13853 12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPY--MTDLIEANSMGHEP-NLIDIYSASWGPTDDG 85 (108)
Q Consensus 12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~--vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG 85 (108)
.+||.|+...+|..|.-+ ..+++|+++|-.+|+++.+. .....-..++.+.. +.++|.++|||.....
T Consensus 59 ~vAgiia~~~~~~~~~~~------~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~ 129 (293)
T cd04842 59 HVAGIIAGKGNDSSSISL------YKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNN 129 (293)
T ss_pred hhheeeccCCcCCCcccc------cccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCCcc
Confidence 578999999999876222 35678999999999998731 11112223333332 3589999999987653
No 23
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=96.62 E-value=0.0026 Score=48.18 Aligned_cols=78 Identities=17% Similarity=0.055 Sum_probs=48.6
Q ss_pred hhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCCChHhh-hhhccCCC-CcccEEeCCCCCCCCCCcccC
Q psy13853 13 TVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIE-ANSMGHEP-NLIDIYSASWGPTDDGKTVDG 90 (108)
Q Consensus 13 ~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~E-A~ALsy~~-~~iDIYScSWGP~DdG~tvdg 90 (108)
++|.|+...+|..+- .+++|+++|-.+|+++.....+..+ .+++.+.. +.+||.+.|||..+
T Consensus 74 vagii~~~~~~~~~~---------~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~~------- 137 (260)
T cd07484 74 VAGIIAAATNNGTGV---------AGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGGL------- 137 (260)
T ss_pred HHHHHhCccCCCCce---------EeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCCCC-------
Confidence 455565555554332 4578999999999998632222221 23344433 46899999999876
Q ss_pred cHHHHHHHHHHHHhcc
Q psy13853 91 PRNATMRAIVRGVNET 106 (108)
Q Consensus 91 P~~L~~~Al~~Gv~~G 106 (108)
+..+..++++...++|
T Consensus 138 ~~~~~~~~~~~a~~~g 153 (260)
T cd07484 138 GSTALQEAINYAWNKG 153 (260)
T ss_pred CCHHHHHHHHHHHHCC
Confidence 3345666776666555
No 24
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=96.61 E-value=0.0027 Score=49.77 Aligned_cols=67 Identities=10% Similarity=0.003 Sum_probs=46.0
Q ss_pred EEeccCCcccceeecCCC--CCChHhhhhhccCCC-CcccEEeCCCCCCCCCCcccCcHHHHHHHHHHHHhcc
Q psy13853 37 TTLHSRHVSSRIRMLDQP--YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNET 106 (108)
Q Consensus 37 va~a~~AkI~GIRmL~g~--~vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~tvdgP~~L~~~Al~~Gv~~G 106 (108)
.+++|+++|--+|++... ..+....++++.|.. +.+||.++|||+...- ..+.....+|+++..++|
T Consensus 69 ~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~---~~~~~~l~~a~~~a~~~g 138 (267)
T cd07476 69 EGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQT---GEADPILANAVAMCQQNN 138 (267)
T ss_pred eeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCC---CCCCHHHHHHHHHHHHCC
Confidence 356889999999998652 123445566777776 4699999999975421 123455677887777665
No 25
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=96.53 E-value=0.0016 Score=48.30 Aligned_cols=77 Identities=12% Similarity=0.047 Sum_probs=50.4
Q ss_pred ccccceeeeeEEEEeccCCcccceeecCCCC-CChHhhhhhccCCC-CcccEEeCCCCCCCCCCcccCcHHHHHHHHHHH
Q psy13853 25 HLGSFRVLSFVVTTLHSRHVSSRIRMLDQPY-MTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRG 102 (108)
Q Consensus 25 ~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~-vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~tvdgP~~L~~~Al~~G 102 (108)
.-|+|..++=+..+.+|+++|..+|+++... .+...-..++.|.. +.+||+++|||...+. +.+..+++++..
T Consensus 43 ~~gHGT~vAgiia~~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~-----~~~~~~~~~~~a 117 (222)
T cd07492 43 KDGHGTACAGIIKKYAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR-----DFPLLKELLEYA 117 (222)
T ss_pred CCCcHHHHHHHHHccCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC-----cCHHHHHHHHHH
Confidence 4456644443334567899999999998731 23334456677666 6899999999987654 234455666666
Q ss_pred Hhcc
Q psy13853 103 VNET 106 (108)
Q Consensus 103 v~~G 106 (108)
.++|
T Consensus 118 ~~~g 121 (222)
T cd07492 118 YKAG 121 (222)
T ss_pred HHCC
Confidence 5543
No 26
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=96.48 E-value=0.0032 Score=48.46 Aligned_cols=87 Identities=17% Similarity=0.054 Sum_probs=55.9
Q ss_pred hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCC-CCChHhhhhhccCCC-CcccEEeCCCCCCCCCCccc
Q psy13853 12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQP-YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVD 89 (108)
Q Consensus 12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~-~vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~tvd 89 (108)
.|||.|+...|| .+++|-|. ...+++|++++--+|+++.. ..++....+++.|.. +.+||.++|||......
T Consensus 66 ~VAgiia~~~~~-~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~~~~--- 139 (273)
T cd07485 66 HVAGTIAAVNNN-GGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTGGGI--- 139 (273)
T ss_pred HHHHHHHcccCC-Ccceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCCccc---
Confidence 467888776654 44433111 11337899999999999862 345555667776655 47999999999865321
Q ss_pred CcHHHHHHHHHHHHhc
Q psy13853 90 GPRNATMRAIVRGVNE 105 (108)
Q Consensus 90 gP~~L~~~Al~~Gv~~ 105 (108)
- ....++|+...+++
T Consensus 140 ~-~~~~~~a~~~~~~~ 154 (273)
T cd07485 140 Y-SPLLKDAFDYFIEN 154 (273)
T ss_pred c-CHHHHHHHHHHHHh
Confidence 1 22456677776665
No 27
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=96.41 E-value=0.0042 Score=47.59 Aligned_cols=75 Identities=7% Similarity=-0.028 Sum_probs=49.1
Q ss_pred hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCC----CCChHhhhhhccCCC-CcccEEeCCCCCCCCCC
Q psy13853 12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQP----YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGK 86 (108)
Q Consensus 12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~----~vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~ 86 (108)
.+||.|+...+|. . +++|+++|-.+|+++.. ..+...-++++.|.. +.+||.++|||-+++
T Consensus 41 ~vAgiia~~~~~~---~---------Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~~-- 106 (239)
T cd05561 41 AVASLLAGAGAQR---P---------GLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPPN-- 106 (239)
T ss_pred HHHHHHhCCCCCC---c---------ccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCC--
Confidence 4667777655553 2 36889999999999852 123333356677655 589999999985332
Q ss_pred cccCcHHHHHHHHHHHHhcc
Q psy13853 87 TVDGPRNATMRAIVRGVNET 106 (108)
Q Consensus 87 tvdgP~~L~~~Al~~Gv~~G 106 (108)
....+|+++..++|
T Consensus 107 ------~~l~~ai~~a~~~g 120 (239)
T cd05561 107 ------ALLAAAVAAAAARG 120 (239)
T ss_pred ------HHHHHHHHHHHHCC
Confidence 34556777666654
No 28
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=96.37 E-value=0.0012 Score=49.54 Aligned_cols=85 Identities=12% Similarity=-0.013 Sum_probs=54.2
Q ss_pred hhhceeeccc-cCCccccceeeeeEEEEeccCCcccceeecCCCCCChHhhhhhccCCC--CcccEEeCCCCCCCCCCcc
Q psy13853 12 LTVLEIPLDA-QNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEANSMGHEP--NLIDIYSASWGPTDDGKTV 88 (108)
Q Consensus 12 ~~~geia~~~-nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~EA~ALsy~~--~~iDIYScSWGP~DdG~tv 88 (108)
.++|.|+... +|..|..| ++|+++|-.+|+++....+...-..++.+.. +.++|++.|||+.+ +...
T Consensus 51 ~va~ii~~~~~~~~~~~~G---------va~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~-~~~~ 120 (282)
T PF00082_consen 51 HVAGIIAGNGGNNGPGING---------VAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNS-GPPD 120 (282)
T ss_dssp HHHHHHHHTTSSSSSSETC---------SSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEE-SSSH
T ss_pred hhhhhcccccccccccccc---------ccccccccccccccccccccccccchhhhhhhccCCccccccccccc-cccc
Confidence 5778888876 67777765 6889999999998883223333345566554 67899999999955 1111
Q ss_pred cCcHHHHHHHHHHHHhcc
Q psy13853 89 DGPRNATMRAIVRGVNET 106 (108)
Q Consensus 89 dgP~~L~~~Al~~Gv~~G 106 (108)
..-..+..++++...++|
T Consensus 121 ~~~~~~~~~~~~~~~~~g 138 (282)
T PF00082_consen 121 PSYSDILEEAIDYAEKKG 138 (282)
T ss_dssp SHHHHHHHHHHHHHHHTT
T ss_pred cccccccccccccccccC
Confidence 111233445555555444
No 29
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=96.28 E-value=0.0063 Score=47.12 Aligned_cols=60 Identities=12% Similarity=0.072 Sum_probs=40.8
Q ss_pred hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCCC-hHhhhhhccCCC-CcccEEeCCCCCCC
Q psy13853 12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMT-DLIEANSMGHEP-NLIDIYSASWGPTD 83 (108)
Q Consensus 12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vt-d~~EA~ALsy~~-~~iDIYScSWGP~D 83 (108)
.|||.|+...++ ..+++|+++|..+|+++..... ...-.+++.|.. +.+||.++|||..+
T Consensus 50 ~VAGiIa~~~~~------------~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~ 111 (255)
T cd07479 50 FVAGVIASSREQ------------CLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD 111 (255)
T ss_pred HHHHHHHccCCC------------ceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccCCC
Confidence 467777764321 1356889999999999874222 222356676654 58999999999654
No 30
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=96.04 E-value=0.016 Score=41.10 Aligned_cols=80 Identities=16% Similarity=0.039 Sum_probs=52.6
Q ss_pred hhhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCC-CChHhhhhhccCC--CCcccEEeCCCCCCCCCCc
Q psy13853 11 YLTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPY-MTDLIEANSMGHE--PNLIDIYSASWGPTDDGKT 87 (108)
Q Consensus 11 ~~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~-vtd~~EA~ALsy~--~~~iDIYScSWGP~DdG~t 87 (108)
..|++.|+...++..+ .+++|+++|.-+|+++... .....-.+++.+. .+..||.++|||.....
T Consensus 48 t~va~~i~~~~~~~~~----------~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~-- 115 (241)
T cd00306 48 THVAGIIAASANNGGG----------VGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP-- 115 (241)
T ss_pred HHHHHHHhcCCCCCCC----------EEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC--
Confidence 3567777776655443 3367899999999998831 2344445555555 47999999999986554
Q ss_pred ccCcHHHHHHHHHHHHhc
Q psy13853 88 VDGPRNATMRAIVRGVNE 105 (108)
Q Consensus 88 vdgP~~L~~~Al~~Gv~~ 105 (108)
+.....+++.+..++
T Consensus 116 ---~~~~~~~~~~~~~~~ 130 (241)
T cd00306 116 ---PSSALSEAIDYALAK 130 (241)
T ss_pred ---CCHHHHHHHHHHHHh
Confidence 344445555555443
No 31
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=96.03 E-value=0.0099 Score=43.71 Aligned_cols=76 Identities=17% Similarity=0.090 Sum_probs=47.3
Q ss_pred hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCC---ChHhhhhhccCCC-CcccEEeCCCCCCCCCCc
Q psy13853 12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYM---TDLIEANSMGHEP-NLIDIYSASWGPTDDGKT 87 (108)
Q Consensus 12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~v---td~~EA~ALsy~~-~~iDIYScSWGP~DdG~t 87 (108)
.+||.|+...++ .+. .+++|+++|-.+|+++.... .+.. .++.+.. +.++|.++|||..++.
T Consensus 45 ~vA~ii~~~~~~-~~~---------~giap~a~i~~~~~~~~~~~~~~~~l~--~ai~~a~~~~~~Vin~S~g~~~~~-- 110 (229)
T cd07477 45 HVAGIIAALDNG-VGV---------VGVAPEADLYAVKVLNDDGSGTYSDII--AGIEWAIENGMDIINMSLGGPSDS-- 110 (229)
T ss_pred HHHHHHhcccCC-Ccc---------EeeCCCCEEEEEEEECCCCCcCHHHHH--HHHHHHHHCCCCEEEECCccCCCC--
Confidence 466766665544 322 45789999999999986311 2333 3333322 4699999999975532
Q ss_pred ccCcHHHHHHHHHHHHhcc
Q psy13853 88 VDGPRNATMRAIVRGVNET 106 (108)
Q Consensus 88 vdgP~~L~~~Al~~Gv~~G 106 (108)
...+++++...++|
T Consensus 111 -----~~~~~~~~~a~~~g 124 (229)
T cd07477 111 -----PALREAIKKAYAAG 124 (229)
T ss_pred -----HHHHHHHHHHHHCC
Confidence 23456666665554
No 32
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=95.29 E-value=0.018 Score=44.73 Aligned_cols=81 Identities=19% Similarity=0.206 Sum_probs=52.0
Q ss_pred ccccceeeeeEEEEeccCCcccceeecCCCC-------CChHhhhhhccCCC-CcccEEeCCCCCCCCCCcccCcHHHHH
Q psy13853 25 HLGSFRVLSFVVTTLHSRHVSSRIRMLDQPY-------MTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATM 96 (108)
Q Consensus 25 ~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~-------vtd~~EA~ALsy~~-~~iDIYScSWGP~DdG~tvdgP~~L~~ 96 (108)
-+|+|.-++=+-.+++|+++|-.+|+++... .+...-++|+.|.. +.+||.++|||..... ..+.-....+
T Consensus 48 ~~gHGT~vAgiI~gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~-~~~~~~~~l~ 126 (247)
T cd07491 48 ADGHGTAMARMICRICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPE-DNDNDINELE 126 (247)
T ss_pred CCCcHHHHHHHHHHHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeeccccc-ccccchHHHH
Confidence 4566643222224678999999999998631 23344567888876 5899999999974321 1122244566
Q ss_pred HHHHHHHhcc
Q psy13853 97 RAIVRGVNET 106 (108)
Q Consensus 97 ~Al~~Gv~~G 106 (108)
+|+++..++|
T Consensus 127 ~ai~~A~~~G 136 (247)
T cd07491 127 NAIKEALDRG 136 (247)
T ss_pred HHHHHHHhCC
Confidence 7777777665
No 33
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=94.84 E-value=0.039 Score=41.74 Aligned_cols=61 Identities=16% Similarity=0.035 Sum_probs=40.6
Q ss_pred EeccCCcccceeecCCC-CCChHhhhhhccCCCC------cccEEeCCCCCCCCCCcccCcHHHHHHHHHHHHhcc
Q psy13853 38 TLHSRHVSSRIRMLDQP-YMTDLIEANSMGHEPN------LIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNET 106 (108)
Q Consensus 38 a~a~~AkI~GIRmL~g~-~vtd~~EA~ALsy~~~------~iDIYScSWGP~DdG~tvdgP~~L~~~Al~~Gv~~G 106 (108)
+++|+++|-.+|+++.+ ..+......++.|..+ .++|.++|||-.. .+...+++.+..++|
T Consensus 79 GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~--------~~~~~~~~~~~~~~g 146 (255)
T cd04077 79 GVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA--------STALDAAVAAAVNAG 146 (255)
T ss_pred CcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC--------CHHHHHHHHHHHHCC
Confidence 46889999999999874 2334444556655443 4799999999632 234455666665554
No 34
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=94.54 E-value=0.08 Score=41.50 Aligned_cols=47 Identities=11% Similarity=-0.039 Sum_probs=32.8
Q ss_pred EEeccCCcccceeecCC-CCCChHhhhhhccCCC-CcccEEeCCCCCCC
Q psy13853 37 TTLHSRHVSSRIRMLDQ-PYMTDLIEANSMGHEP-NLIDIYSASWGPTD 83 (108)
Q Consensus 37 va~a~~AkI~GIRmL~g-~~vtd~~EA~ALsy~~-~~iDIYScSWGP~D 83 (108)
.++||+++|..+|+++. ...+...-..++.|.. +.+||.+.|||...
T Consensus 137 ~GvAP~a~l~~~kv~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~ 185 (307)
T cd04852 137 SGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIADGVDVISYSIGGGS 185 (307)
T ss_pred EEECCCCeEEEEEEecCCCCccHHHHHHHHHHHHHcCCCEEEeCCCCCC
Confidence 47789999999999986 2223333334454433 58999999999754
No 35
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=92.98 E-value=0.051 Score=46.41 Aligned_cols=60 Identities=10% Similarity=-0.015 Sum_probs=39.8
Q ss_pred hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCCCh----HhhhhhccCCC-CcccEEeCCCCC
Q psy13853 12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTD----LIEANSMGHEP-NLIDIYSASWGP 81 (108)
Q Consensus 12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd----~~EA~ALsy~~-~~iDIYScSWGP 81 (108)
.+||.||...+|..- ..++||+|+|-.+|+++.. ... ..-.+++.+.. ..+||.+.|||-
T Consensus 190 hVAGIIAg~~~~~~~---------~~GVAP~A~I~svkv~d~~-~gs~~t~~~l~~ai~~ai~~gadVIN~SlG~ 254 (412)
T cd04857 190 HVAGIAAAHFPEEPE---------RNGVAPGAQIVSIKIGDTR-LGSMETGTALVRAMIAAIETKCDLINMSYGE 254 (412)
T ss_pred HHHHHHhCCCCCCCc---------eEEecCCCeEEEEEeccCC-CCCccchHHHHHHHHHHHHcCCCEEEecCCc
Confidence 478888887655332 2567899999999998762 221 11123343333 479999999995
No 36
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=88.77 E-value=0.27 Score=38.12 Aligned_cols=64 Identities=9% Similarity=0.054 Sum_probs=39.4
Q ss_pred hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCC-----CCChHhhhhhccC----CCCcccEEeCCCCCC
Q psy13853 12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQP-----YMTDLIEANSMGH----EPNLIDIYSASWGPT 82 (108)
Q Consensus 12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~-----~vtd~~EA~ALsy----~~~~iDIYScSWGP~ 82 (108)
.+||.|+...+|.... .+++|+++|-.+|+|+.. ..+...=.+++.| +.+.++|++-|||..
T Consensus 43 ~vAgiia~~~~~~~~~---------~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~ 113 (291)
T cd04847 43 AVAGLALYGDLTLPGN---------GLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSP 113 (291)
T ss_pred HHHHHHHcCcccCCCC---------CCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCC
Confidence 4677787655442222 346889999999999873 1121111233333 234469999999986
Q ss_pred CC
Q psy13853 83 DD 84 (108)
Q Consensus 83 Dd 84 (108)
..
T Consensus 114 ~~ 115 (291)
T cd04847 114 LP 115 (291)
T ss_pred CC
Confidence 54
No 37
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=85.90 E-value=1.4 Score=36.04 Aligned_cols=68 Identities=10% Similarity=0.079 Sum_probs=42.3
Q ss_pred EEeccCCcccceeecCCCCCChHhhh--hhccCCCCcccEEeCCCCCCCCCCcccCcHHHHHHHHHHHHhcc
Q psy13853 37 TTLHSRHVSSRIRMLDQPYMTDLIEA--NSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNET 106 (108)
Q Consensus 37 va~a~~AkI~GIRmL~g~~vtd~~EA--~ALsy~~~~iDIYScSWGP~DdG~tvdgP~~L~~~Al~~Gv~~G 106 (108)
.++||+++|--++..+.. .++...+ .++....+..+|-|+|||-...-.. +.-.....+++++...+|
T Consensus 84 ~gvAP~a~i~~~~~~~~~-~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~-~~~~~~~~~~~~~a~~~G 153 (361)
T cd04056 84 GAIAPGANITLYFAPGTV-TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLP-PAYAQRVCNLFAQAAAQG 153 (361)
T ss_pred HhccCCCeEEEEEECCcC-ccHHHHHHHHHHHcCCCCCCEEEccCCccccccC-HHHHHHHHHHHHHHHhCC
Confidence 567899999999999762 3333332 3444444689999999997554321 111123345777776665
No 38
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=83.40 E-value=1.7 Score=34.42 Aligned_cols=41 Identities=12% Similarity=-0.046 Sum_probs=30.0
Q ss_pred EEeccCCcccceeecCCCCCChHhhhhhccCCC-CcccEEeCCCCC
Q psy13853 37 TTLHSRHVSSRIRMLDQPYMTDLIEANSMGHEP-NLIDIYSASWGP 81 (108)
Q Consensus 37 va~a~~AkI~GIRmL~g~~vtd~~EA~ALsy~~-~~iDIYScSWGP 81 (108)
.++||+++|.-.|..++ ..+. +.++.|.. +.+||.+.|||-
T Consensus 59 ~GvAP~a~l~~~~~~~~--~~~i--~~ai~~a~~~g~~Vin~S~g~ 100 (275)
T cd05562 59 HDIAPGAELAFHTAGGG--ELDF--AAAIRALAAAGADIIVDDIGY 100 (275)
T ss_pred hccCCCCEEEEEecCCC--HHHH--HHHHHHHHHcCCCEEEecccc
Confidence 47899999998887654 4444 44555543 589999999985
No 39
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=79.57 E-value=2.2 Score=36.37 Aligned_cols=62 Identities=6% Similarity=-0.154 Sum_probs=40.0
Q ss_pred hhhceeeccccCCccccceeeeeEEEEeccCCcccceeecCCCCC-----------ChHhhhhhccCCC------CcccE
Q psy13853 12 LTVLEIPLDAQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYM-----------TDLIEANSMGHEP------NLIDI 74 (108)
Q Consensus 12 ~~~geia~~~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~v-----------td~~EA~ALsy~~------~~iDI 74 (108)
.|||.||...+|...- .++||+|+|-.+|+++.... ++.+-..|+.|-. +.-+|
T Consensus 83 hvAGIiag~~~~~~~~---------~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~~p~V 153 (455)
T cd07478 83 HVAGIAAGNGDNNPDF---------KGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKPLV 153 (455)
T ss_pred HHHHHHhcCCCCCCCc---------cccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHHhCCCeE
Confidence 4899998887764444 33688999999999987421 1222234444422 23468
Q ss_pred EeCCCCCC
Q psy13853 75 YSASWGPT 82 (108)
Q Consensus 75 YScSWGP~ 82 (108)
.+-|||-.
T Consensus 154 InlSlG~~ 161 (455)
T cd07478 154 INISLGTN 161 (455)
T ss_pred EEEccCcC
Confidence 88888864
No 40
>PF03497 Anthrax_toxA: Anthrax toxin LF subunit; InterPro: IPR005165 Anthrax toxin is a plasmid-encoded toxin complex produced by the Gram-positive, spore-forming bacteria, Bacillus anthracis. The toxin consists of three non-toxic proteins: the protective antigen (PA), the lethal factor (LF) and the edema factor (EF) []. These component proteins self-assemble at the surface of host cell receptors, yielding a series of toxic complexes that can produce shock-like symptoms and death. Anthrax toxin is one of a large group of Bacillus and Clostridium exotoxins referred to as binary toxins, forming independent enzymatic (A moiety) and binding (B moiety) components. The LF and EF proteins are the enzymes (A moiety) that act on cytosolic substrates, while PA is a multi-functional protein (B moiety) that binds to cell surface receptors, mediates the assembly and internalisation of the complexes, and delivers them to the host cell endosome []. Once PA is attached to the host receptor [], it must then be cleaved by a host cell surface (furin family) protease before it is able to bind EF and LF. The cleavage of the N terminus of PA enables the C-terminal fragment to self-associate into a ring-shaped heptameric complex (prepore) that can bind LF or EF competitively. The PA-LF/EF complex is then internalised by endocytosis, and delivered to the endosome, where PA forms a pore in the endosomal membrane in order to translocate LF and EF to the cytosol. LF is a Zn-dependent metalloprotease that cleaves and inactivates mitogen-activated protein (MAP) kinases, kills macrophages, and causes death of the host by inhibiting cell proliferation [, ]. EF is a calcium-and calmodulin-dependent adenylyl cyclase that can cause edema (fluid-filled swelling) when associated with PA. EF is not toxic by itself, and is required for the survival of germinated Bacillus spores within macrophages at the early stages of infection. EF dramatically elevates the level of host intracellular cAMP, a ubiquitous messenger that integrates many processes of the cell; increases in cAMP can interfere with host intracellular signalling []. This entry represents a central domain in the edema factor adenylyl cyclase protein of anthrax toxin, as well as in adenylyl cylcases from other bacterial toxins.; GO: 0008294 calcium- and calmodulin-responsive adenylate cyclase activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2COL_A 1YRT_A 1YRU_A 1ZOT_A 1S26_C 1XFY_F 1XFX_C 1Y0V_A 1SK6_C 1XFW_C ....
Probab=51.24 E-value=3 Score=32.56 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=20.8
Q ss_pred ccceeecCCCCCChHhhhhhccCCCCcccEEeCCCCCC
Q psy13853 45 SSRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPT 82 (108)
Q Consensus 45 I~GIRmL~g~~vtd~~EA~ALsy~~~~iDIYScSWGP~ 82 (108)
|=|||-.+. ..|++.|.-. .=+--+|.=-||+|||.
T Consensus 33 iI~iRpV~~-~st~LI~~G~-~tKgl~vkgKSsdWGP~ 68 (179)
T PF03497_consen 33 IIGIRPVNK-LSTSLIESGY-ATKGLHVKGKSSDWGPQ 68 (179)
T ss_dssp EEEEE---H-HHHHHHHCT--EE--TT--S--BSSCCC
T ss_pred EEEEEeCCc-chHHHHhcCC-CCCCcccccccCCCCCc
Confidence 557888888 5888888777 55667888899999996
No 41
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=40.93 E-value=11 Score=28.18 Aligned_cols=29 Identities=17% Similarity=-0.047 Sum_probs=20.2
Q ss_pred ccccceeeeeEEEEeccCCcccceeecCCCCCChHhhh
Q psy13853 25 HLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEA 62 (108)
Q Consensus 25 ~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~EA 62 (108)
+||.| +|+..++ .|+-|||-- ...|...|
T Consensus 65 iCGtG-----iG~siaA-NK~~GiRAA---~~~d~~sA 93 (148)
T TIGR02133 65 IGGSG-----NGEAIAA-NKVKGARAA---LAWDTASA 93 (148)
T ss_pred EcCCC-----hhheeee-cccCCeEEE---EECCHHHH
Confidence 68888 5777776 499999975 34554444
No 42
>KOG3052|consensus
Probab=39.64 E-value=11 Score=31.67 Aligned_cols=42 Identities=29% Similarity=0.412 Sum_probs=31.7
Q ss_pred ceeecCCCCCChHhhhhhccCCCCcccEEeCCCCCCCCCCcccCcHHHH
Q psy13853 47 RIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNAT 95 (108)
Q Consensus 47 GIRmL~g~~vtd~~EA~ALsy~~~~iDIYScSWGP~DdG~tvdgP~~L~ 95 (108)
-.|-|-| -.-..+||.++-=.-...| ||.|+|..+..|+.|+
T Consensus 116 ayR~lVg-v~~Te~EaKa~A~eiev~D------gpdd~G~~~~RPGkLs 157 (311)
T KOG3052|consen 116 AYRHLVG-VCYTEEEAKAMAAEIEVVD------GPDDEGEMFTRPGKLS 157 (311)
T ss_pred HHHhhhh-hhccHHHHHHhhhheeecc------CCCCCCCcccCCcccc
Confidence 4466666 3556678887776666666 9999999999998875
No 43
>PF11688 DUF3285: Protein of unknown function (DUF3285); InterPro: IPR021702 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=37.21 E-value=33 Score=21.54 Aligned_cols=19 Identities=21% Similarity=0.093 Sum_probs=15.6
Q ss_pred CcHHHHHHHHHHHHhccCC
Q psy13853 90 GPRNATMRAIVRGVNETRT 108 (108)
Q Consensus 90 gP~~L~~~Al~~Gv~~GRn 108 (108)
.|...++.|++|-|+||++
T Consensus 3 p~pSyvKLAMRNMVRKg~~ 21 (45)
T PF11688_consen 3 PPPSYVKLAMRNMVRKGGT 21 (45)
T ss_pred CCchHHHHHHHHHHHccCc
Confidence 3555789999999999985
No 44
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=36.69 E-value=11 Score=28.19 Aligned_cols=30 Identities=7% Similarity=-0.217 Sum_probs=21.8
Q ss_pred ccccceeeeeEEEEeccCCcccceeecCCCCCChHhhhh
Q psy13853 25 HLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEAN 63 (108)
Q Consensus 25 ~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~EA~ 63 (108)
+||.| +|+..++ .|+-|||-- ..+|...|.
T Consensus 62 iCGTG-----iG~siaA-NK~~GIRAA---~~~d~~~A~ 91 (142)
T PRK08621 62 IDAYG-----AGSFMVA-TKIKGMVAA---EVSDERSAY 91 (142)
T ss_pred EcCCC-----hhhhhhh-hcCCCeEEE---EECCHHHHH
Confidence 79988 6777877 499999975 355655553
No 45
>smart00162 SAPA Saposin/surfactant protein-B A-type DOMAIN. Present as four and three degenerate copies, respectively, in prosaposin and surfactant protein B. Single copies in acid sphingomyelinase, NK-lysin amoebapores and granulysin. Putative phospholipid membrane binding domains.
Probab=35.15 E-value=16 Score=21.52 Aligned_cols=8 Identities=38% Similarity=1.199 Sum_probs=6.2
Q ss_pred eCCCCCCC
Q psy13853 76 SASWGPTD 83 (108)
Q Consensus 76 ScSWGP~D 83 (108)
-|+|||+=
T Consensus 4 ~CtwGPsy 11 (34)
T smart00162 4 RCTWGPSV 11 (34)
T ss_pred cccCCChh
Confidence 48999963
No 46
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=34.23 E-value=1.1e+02 Score=23.90 Aligned_cols=82 Identities=16% Similarity=0.016 Sum_probs=50.6
Q ss_pred hhhceeecc-ccCCccccceeeeeEEEEeccCCcccceeecCCC--CCChHhhhhhccCCCCc---ccEEeCCCCCCCCC
Q psy13853 12 LTVLEIPLD-AQNPHLGSFRVLSFVVTTLHSRHVSSRIRMLDQP--YMTDLIEANSMGHEPNL---IDIYSASWGPTDDG 85 (108)
Q Consensus 12 ~~~geia~~-~nN~~cgvg~~~~f~~va~a~~AkI~GIRmL~g~--~vtd~~EA~ALsy~~~~---iDIYScSWGP~DdG 85 (108)
.|+|.|+.. .+|...- .+++|++++..++.|+.. .-+-...+..+.+..+. .|+..-|+|..
T Consensus 188 ~vag~ia~~~~~~~~~~---------~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~g~~--- 255 (508)
T COG1404 188 HVAGTIAAVIFDNGAGV---------AGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGS--- 255 (508)
T ss_pred eeeeeeeeecccCCCcc---------ccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecCCCC---
Confidence 578888773 2343332 235678899999999841 12222225666666653 79999998876
Q ss_pred CcccCcHHHHHHHHHHHHhcc
Q psy13853 86 KTVDGPRNATMRAIVRGVNET 106 (108)
Q Consensus 86 ~tvdgP~~L~~~Al~~Gv~~G 106 (108)
.-+.+......|+......|
T Consensus 256 -~~~~~~~~~~~a~~~~~~~g 275 (508)
T COG1404 256 -LSDSASPALGDALAAAANAG 275 (508)
T ss_pred -ccccccHHHHHHHHHHHHcC
Confidence 23334455666777666655
No 47
>PF14443 DBC1: DBC1
Probab=33.62 E-value=45 Score=24.81 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=19.5
Q ss_pred eCCCCCCCCCC-cccCcHHHHHHHHHH
Q psy13853 76 SASWGPTDDGK-TVDGPRNATMRAIVR 101 (108)
Q Consensus 76 ScSWGP~DdG~-tvdgP~~L~~~Al~~ 101 (108)
.-.|.|+-||- --..|..|.+.|++.
T Consensus 23 GG~WspsLDG~DP~~dp~~LI~TAiR~ 49 (126)
T PF14443_consen 23 GGPWSPSLDGGDPSSDPSVLIRTAIRT 49 (126)
T ss_pred CCcCCcccCCCCCCCCcHHHHHHHHHH
Confidence 44799996664 444599999999875
No 48
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=33.05 E-value=12 Score=27.98 Aligned_cols=29 Identities=7% Similarity=-0.212 Sum_probs=20.5
Q ss_pred ccccceeeeeEEEEeccCCcccceeecCCCCCChHhhh
Q psy13853 25 HLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEA 62 (108)
Q Consensus 25 ~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~EA 62 (108)
+||.| +|+..+++ |+-|||-- ...|...|
T Consensus 62 iCGtG-----iG~siaAN-K~~GIRAA---~~~d~~~A 90 (141)
T TIGR01118 62 IDAYG-----AGSFMVAT-KIKGMIAA---EVSDERSA 90 (141)
T ss_pred EcCCC-----HhHhhhhh-cCCCeEEE---EECCHHHH
Confidence 78888 67777764 99999975 34554444
No 49
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=31.72 E-value=13 Score=27.80 Aligned_cols=29 Identities=7% Similarity=-0.225 Sum_probs=20.8
Q ss_pred ccccceeeeeEEEEeccCCcccceeecCCCCCChHhhh
Q psy13853 25 HLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEA 62 (108)
Q Consensus 25 ~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~EA 62 (108)
+||.| +|+..++ .|+-|||-- ..+|...|
T Consensus 61 iCGtG-----iG~siaA-NKv~GIRaA---~~~d~~~A 89 (141)
T PRK12613 61 VDAYG-----AGPFMVA-TKLKGMVAA---EVSDERSA 89 (141)
T ss_pred EcCCC-----HhHhhhh-hcCCCeEEE---EECCHHHH
Confidence 68888 6777776 499999975 35555555
No 50
>PF10396 TrmE_N: GTP-binding protein TrmE N-terminus; InterPro: IPR018948 This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP. TrmE is homologous to the tetrahydrofolate-binding domain of N,N-dimethylglycine oxidase and indeed binds formyl-tetrahydrofolate. TrmE actively participates in the formylation reaction of uridine and regulates the ensuing hydrogenation reaction of a Schiff's base intermediate. This B chain is the N-terminal portion of the protein consisting of five beta-strands and three alpha helices and is necessary for mediating dimer formation within the protein []. ; PDB: 1XZQ_B 1XZP_A 3GEE_A 3GEI_B 3GEH_A.
Probab=30.81 E-value=23 Score=25.53 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=12.9
Q ss_pred CCcccCcHHHHHHHHHHH
Q psy13853 85 GKTVDGPRNATMRAIVRG 102 (108)
Q Consensus 85 G~tvdgP~~L~~~Al~~G 102 (108)
|-.+..|++.|++||.||
T Consensus 96 G~R~A~pGEFT~RAflNG 113 (114)
T PF10396_consen 96 GARLAEPGEFTRRAFLNG 113 (114)
T ss_dssp T-EE--TTHHHHHHHHTT
T ss_pred CceEcCCchhhHHHHhcC
Confidence 556888999999999886
No 51
>PF12609 DUF3774: Wound-induced protein; InterPro: IPR022251 This family of proteins is found in eukaryotes. Proteins in this family are typically between 81 and 97 amino acids in length. The proteins in the family are often annotated as wound-induced proteins however there is little accompanying literature to confirm this.
Probab=26.44 E-value=32 Score=23.23 Aligned_cols=8 Identities=50% Similarity=1.572 Sum_probs=7.1
Q ss_pred EEeCCCCC
Q psy13853 74 IYSASWGP 81 (108)
Q Consensus 74 IYScSWGP 81 (108)
.|-.+|||
T Consensus 72 MyLSCWGP 79 (79)
T PF12609_consen 72 MYLSCWGP 79 (79)
T ss_pred EEEeccCc
Confidence 68899998
No 52
>PF02199 SapA: Saposin A-type domain; InterPro: IPR003119 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ]. The saposin A-type domain may play a role in targeting, as propeptides containing the saposin A-type domain of the C terminus of prosaposin and of the N-terminal part of pulmonary surfactant-associated protein B are involved in the transport to the lysosome and to secretory granules (lamellar bodies, which are lysosomal-like organelles), respectively [].
Probab=24.57 E-value=35 Score=19.81 Aligned_cols=8 Identities=38% Similarity=1.219 Sum_probs=6.1
Q ss_pred eCCCCCCC
Q psy13853 76 SASWGPTD 83 (108)
Q Consensus 76 ScSWGP~D 83 (108)
-|+|||+=
T Consensus 4 ~C~~GP~y 11 (34)
T PF02199_consen 4 QCTWGPSY 11 (34)
T ss_pred ccCCCCCc
Confidence 48999963
No 53
>PF15566 Imm18: Immunity protein 18
Probab=22.07 E-value=13 Score=23.94 Aligned_cols=14 Identities=14% Similarity=0.425 Sum_probs=12.5
Q ss_pred CCCcccEEeCCCCC
Q psy13853 68 EPNLIDIYSASWGP 81 (108)
Q Consensus 68 ~~~~iDIYScSWGP 81 (108)
.+++++..|.+||=
T Consensus 19 ~~~H~Hlmtp~WgG 32 (52)
T PF15566_consen 19 PFDHEHLMTPDWGG 32 (52)
T ss_pred CCCCceeccccccc
Confidence 67899999999985
No 54
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=21.87 E-value=15 Score=28.25 Aligned_cols=29 Identities=17% Similarity=0.099 Sum_probs=19.7
Q ss_pred ccccceeeeeEEEEeccCCcccceeecCCCCCChHhhh
Q psy13853 25 HLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEA 62 (108)
Q Consensus 25 ~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~EA 62 (108)
+||.| +|+..++ .|+-|||-- .+.|...|
T Consensus 64 iCGTG-----iG~siaA-NKv~GIRAA---l~~d~~sA 92 (171)
T TIGR01119 64 ICGTG-----VGINNAV-NKVPGVRSA---LVRDMTSA 92 (171)
T ss_pred EcCCc-----HHHHHHH-hcCCCeEEE---EeCCHHHH
Confidence 68877 5666676 489999964 34555444
No 55
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=21.83 E-value=14 Score=27.48 Aligned_cols=31 Identities=13% Similarity=0.073 Sum_probs=21.8
Q ss_pred ccccceeeeeEEEEeccCCcccceeecCCCCCChHhhhhh
Q psy13853 25 HLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEANS 64 (108)
Q Consensus 25 ~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~EA~A 64 (108)
+||.| +|+..++ .|+-|||-- ...|...|.-
T Consensus 63 iCGtG-----iG~siaA-NK~~GIraa---~~~d~~~A~~ 93 (143)
T TIGR01120 63 ICGTG-----IGMSIAA-NKFAGIRAA---LCSEPYMAQM 93 (143)
T ss_pred EcCCc-----HHHHHHH-hcCCCeEEE---EECCHHHHHH
Confidence 68877 5666676 489999975 4666666643
No 56
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=21.72 E-value=15 Score=27.59 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=20.4
Q ss_pred ccccceeeeeEEEEeccCCcccceeecCCCCCChHhhhh
Q psy13853 25 HLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEAN 63 (108)
Q Consensus 25 ~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~EA~ 63 (108)
+||.| +|+.++++ |+-|||-- ...|...|.
T Consensus 65 iCGtG-----iG~siaAN-K~~GIRAA---~~~d~~~A~ 94 (148)
T PRK05571 65 ICGTG-----IGMSIAAN-KVKGIRAA---LCHDTYSAH 94 (148)
T ss_pred EcCCc-----HHHHHHHh-cCCCeEEE---EECCHHHHH
Confidence 68887 56666764 89999975 355555553
No 57
>PF09163 Form-deh_trans: Formate dehydrogenase N, transmembrane; InterPro: IPR015246 The transmembrane domain of the beta subunit of formate dehydrogenase consists of a single transmembrane helix. This domain acts as a transmembrane anchor, allowing the conduction of electrons within the protein []. ; PDB: 1KQG_B 1KQF_B.
Probab=20.73 E-value=48 Score=20.48 Aligned_cols=13 Identities=38% Similarity=0.562 Sum_probs=8.2
Q ss_pred hhhhhhhhhceee
Q psy13853 6 ASVYHYLTVLEIP 18 (108)
Q Consensus 6 ~~~~~~~~~geia 18 (108)
+..+||+.+|-.-
T Consensus 26 ~~~~Hyi~vGPn~ 38 (44)
T PF09163_consen 26 AGFFHYITVGPNR 38 (44)
T ss_dssp HHHHHHHHH--B-
T ss_pred HHHHHHhhcCCCC
Confidence 5689999998543
No 58
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=20.52 E-value=17 Score=28.12 Aligned_cols=30 Identities=20% Similarity=0.073 Sum_probs=21.2
Q ss_pred ccccceeeeeEEEEeccCCcccceeecCCCCCChHhhhh
Q psy13853 25 HLGSFRVLSFVVTTLHSRHVSSRIRMLDQPYMTDLIEAN 63 (108)
Q Consensus 25 ~cgvg~~~~f~~va~a~~AkI~GIRmL~g~~vtd~~EA~ 63 (108)
+||.| +|+..+++ |+-|||-- ..+|...|.
T Consensus 64 iCGTG-----iG~siaAN-Kv~GIRAA---~~~d~~sA~ 93 (171)
T PRK08622 64 ICGTG-----VGISNAVN-KVPGIRSA---LVRDMTSAL 93 (171)
T ss_pred EcCCc-----HHHHHHHh-cCCCeEEE---EeCCHHHHH
Confidence 68887 56667764 89999975 456665553
Done!