RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13853
         (108 letters)



>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET:
           DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus}
           SCOP: b.18.1.20 c.41.1.1
          Length = 471

 Score = 59.7 bits (144), Expect = 5e-12
 Identities = 35/60 (58%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 48  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNETR 107
           +RMLD   +TD +EA S+G  PN I IYSASWGP DDGKTVDGP      A  RGV++ R
Sbjct: 117 VRMLDG-EVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGR 175


>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT
           like protease, serine protease; HET: NDG; 1.90A
           {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB:
           1r64_A* 1ot5_A*
          Length = 503

 Score = 59.0 bits (142), Expect = 8e-12
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 48  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 105
           IR+L    +T   EA S+ +  ++ DIYS SWGP DDG+ + GP +   +A+V+GV E
Sbjct: 130 IRILSGD-ITTEDEAASLIYGLDVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTE 186


>2oxa_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas
           sobria} PDB: 3hjr_A
          Length = 600

 Score = 42.6 bits (99), Expect = 5e-06
 Identities = 11/81 (13%), Positives = 25/81 (30%), Gaps = 21/81 (25%)

Query: 48  IRMLD---QPYMTDLIEANSMGHEPNLIDIYSASWGPTD------------------DGK 86
             +LD   Q    D + A    +      +++ S+  +                   + +
Sbjct: 144 FNLLDDNSQQLQKDWLYALGDSNASRDNRVFNHSYRMSVVDPRSANSLDQSQLDRLFEQQ 203

Query: 87  TVDGPRNATMRAIVRGVNETR 107
           T+     A ++A   G N+  
Sbjct: 204 TLKAQGAAYIKAAGNGFNKIA 224


>2zx2_A CSL3; lectin, rhamnose, innate immunity, immune system, sugar
           binding protein; HET: RAM; 1.80A {Oncorhynchus keta}
           PDB: 2zx1_A 2zx0_A* 2zx3_A* 2zx4_A*
          Length = 195

 Score = 29.3 bits (65), Expect = 0.18
 Identities = 5/48 (10%), Positives = 14/48 (29%)

Query: 50  MLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMR 97
                 +      + +  +   I I  A++G         G  +  ++
Sbjct: 98  QETISSIICEGSDSQLLCDRGEIRIQRANYGRRQHDVCSIGRPHQQLK 145



 Score = 27.0 bits (59), Expect = 1.3
 Identities = 4/14 (28%), Positives = 6/14 (42%)

Query: 72 IDIYSASWGPTDDG 85
          I I  A++G     
Sbjct: 20 IHIKRANYGRRQHD 33


>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide
           exchange factor, signaling protein; 1.41A {Legionella
           pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B
          Length = 356

 Score = 27.3 bits (60), Expect = 1.1
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 10/65 (15%)

Query: 21  AQNPHLGSFR----VLSFVV----TTLHSRHVSSRIRMLDQPYMTDLIEANSMGHEPN-- 70
            QNP + S      +L+F      T LH+  +  + +M       +L   N+ G      
Sbjct: 122 QQNPDVVSNADAAYLLAFQTIMLNTDLHNPSIPEKNKMTVDGLKRNLRGGNNGGDFDAKF 181

Query: 71  LIDIY 75
           L ++Y
Sbjct: 182 LEELY 186


>2jx9_A Latrophilin 1; lectin, beta-sandwich, disulphide, glycosylated,
          G-protein C receptor, membrane, receptor, transducer,
          transmembrane, CE adhesion; HET: NAG; NMR {Mus
          musculus} PDB: 2jxa_A*
          Length = 106

 Score = 25.6 bits (56), Expect = 2.1
 Identities = 6/14 (42%), Positives = 10/14 (71%)

Query: 72 IDIYSASWGPTDDG 85
          I + +A++G TDD 
Sbjct: 28 IMVENANYGRTDDK 41


>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for
           structural genomics of infec diseases, csgid, rossmann
           fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
          Length = 341

 Score = 26.0 bits (58), Expect = 2.4
 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 16/48 (33%)

Query: 46  SRIRMLDQPY---------MTDLIEANSMGHEP-------NLIDIYSA 77
           + I +L+ P           TD      + ++        NL+ +YSA
Sbjct: 211 NVITLLEDPKSIIKKINKAQTDAETPPRIAYDVENKAGIANLMGLYSA 258


>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A
           {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1
           c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A*
           2d0g_A* 2d0h_A* 1izk_A
          Length = 637

 Score = 25.5 bits (56), Expect = 4.3
 Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 1/31 (3%)

Query: 23  NPHLGSFRVLSFVVTTLHSRHVSSRIR-MLD 52
           +P  G    L  ++  +HS     +   +LD
Sbjct: 232 DPAFGDNSTLQTLINDIHSTANGPKGYLILD 262


>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid,
           structural genomics, niaid, center for structural
           genomics infectious diseases; 1.95A {Yersinia pestis}
          Length = 346

 Score = 24.9 bits (55), Expect = 5.9
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 16/48 (33%)

Query: 46  SRIRMLDQPY---------MTDLIEANSMGHEP-------NLIDIYSA 77
           + I +L+ P          MTD  E   + ++        NL+DI S 
Sbjct: 217 NVIELLEDPKSVVKKIKRAMTDSDEPALIRYDVEKKAGVSNLLDILSG 264


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0797    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,654,854
Number of extensions: 85141
Number of successful extensions: 144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 12
Length of query: 108
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 36
Effective length of database: 4,691,481
Effective search space: 168893316
Effective search space used: 168893316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)