BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13856
(271 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 134 bits (338), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/136 (51%), Positives = 91/136 (66%), Gaps = 3/136 (2%)
Query: 99 PACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKC 158
P+ +P Y K S ++ L + +W EE KLE HSDWVRDVAWAPS GL
Sbjct: 171 PSGQKPNYIK-RFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS 229
Query: 159 MIASCSQDRKVIIWTSNDYV--TWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLW 216
IASCSQD +V IWT +D TW+P +++ F+DVVW+VSWS+T +IL VS GDN V+LW
Sbjct: 230 TIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLW 289
Query: 217 KENTDGAWQCITEMGK 232
KE+ DG W CI+++ K
Sbjct: 290 KESVDGQWVCISDVNK 305
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 56/126 (44%), Gaps = 7/126 (5%)
Query: 103 QPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWA-PSWGLSKCMIA 161
Q Y+ + + R + + + G + I L H V VAWA P +G ++A
Sbjct: 20 QMDYYGTRLATCSSDRSVKIFDVRNGGQ-ILIADLRGHEGPVWQVAWAHPMYG---NILA 75
Query: 162 SCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCG--DNSVSLWKEN 219
SCS DRKVIIW + D V +V W+ L ++CG D ++SL
Sbjct: 76 SCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYT 135
Query: 220 TDGAWQ 225
+G W+
Sbjct: 136 GEGQWE 141
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 57/145 (39%), Gaps = 24/145 (16%)
Query: 100 ACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAP-SWGLSKC 158
A P Y + + S R +I+ R G W + + H V V WAP +GL
Sbjct: 64 AWAHPMYGNI-LASCSYDRKVIIWREENG-TWEKSHEHAGHDSSVNSVCWAPHDYGL--- 118
Query: 159 MIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWN-VSWS---LTGDILTVSCG----- 209
++A S D + + T W +N + N VSW+ + G ++ G
Sbjct: 119 ILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNY 178
Query: 210 ---------DNSVSLWKENTDGAWQ 225
DN + LWKE DG W+
Sbjct: 179 IKRFASGGCDNLIKLWKEEEDGQWK 203
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 69/103 (66%), Gaps = 4/103 (3%)
Query: 131 WIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTS-NDYVTWTPFIM--NT 187
++ E+ LE HSDWVRDVAW+P+ L + +AS SQDR IIWT N+ W ++
Sbjct: 194 YVLESTLEGHSDWVRDVAWSPT-VLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEK 252
Query: 188 FDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEM 230
F DV+W SWSL+G++L +S GDN V+LWKEN +G W+ E+
Sbjct: 253 FPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEV 295
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 137 LENHSDWVRDVAWA-PSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWN- 194
L H V V WA P +G ++ASCS D KV+IW + W+ ++ N
Sbjct: 49 LTGHEGPVWRVDWAHPKFG---TILASCSYDGKVLIWKEEN-GRWSQIAVHAVHSASVNS 104
Query: 195 VSWS--LTGDILTVSCGDNSVSL--WKEN 219
V W+ G +L V+ D VS+ +KEN
Sbjct: 105 VQWAPHEYGPLLLVASSDGKVSVVEFKEN 133
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 97.8 bits (242), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 69/103 (66%), Gaps = 4/103 (3%)
Query: 131 WIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWT-SNDYVTWTPFIM--NT 187
++ E+ LE HSDWVRDVAW+P+ L + +AS SQDR IIWT N+ W ++
Sbjct: 196 YVLESTLEGHSDWVRDVAWSPT-VLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEK 254
Query: 188 FDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEM 230
F DV+W SWSL+G++L +S GDN V+LWKEN +G W+ E+
Sbjct: 255 FPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEV 297
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 137 LENHSDWVRDVAWA-PSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWN- 194
L H V V WA P +G ++ASCS D KV+IW + W+ ++ N
Sbjct: 51 LTGHEGPVWRVDWAHPKFG---TILASCSYDGKVLIWKEENG-RWSQIAVHAVHSASVNS 106
Query: 195 VSWS--LTGDILTVSCGDNSVSL--WKEN 219
V W+ G +L V+ D VS+ +KEN
Sbjct: 107 VQWAPHEYGPLLLVASSDGKVSVVEFKEN 135
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 69/103 (66%), Gaps = 4/103 (3%)
Query: 131 WIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWT-SNDYVTWTPFIM--NT 187
++ E+ LE HSDWVRDVAW+P+ L + +AS SQDR IIWT N+ W ++
Sbjct: 194 YVLESTLEGHSDWVRDVAWSPT-VLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEK 252
Query: 188 FDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEM 230
F DV+W SWSL+G++L +S GDN V+LWKEN +G W+ E+
Sbjct: 253 FPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEV 295
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 137 LENHSDWVRDVAWA-PSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWN- 194
L H V V WA P +G ++ASCS D KV+IW + W+ ++ N
Sbjct: 49 LTGHEGPVWRVDWAHPKFG---TILASCSYDGKVLIWKEENG-RWSQIAVHAVHSASVNS 104
Query: 195 VSWS--LTGDILTVSCGDNSVSL--WKEN 219
V W+ G +L V+ D VS+ +KEN
Sbjct: 105 VQWAPHEYGPLLLVASSDGKVSVVEFKEN 133
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 69/103 (66%), Gaps = 4/103 (3%)
Query: 131 WIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTS-NDYVTWTPFIM--NT 187
++ E+ LE HSDWVRDVAW+P+ L + +AS SQDR IIWT N+ W ++
Sbjct: 194 YVLESTLEGHSDWVRDVAWSPT-VLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEK 252
Query: 188 FDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEM 230
F DV+W SWSL+G++L +S GDN V+LWKEN +G W+ E+
Sbjct: 253 FPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEV 295
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 137 LENHSDWVRDVAWA-PSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWN- 194
L H V V WA P +G ++ASCS D KV+IW + W+ ++ N
Sbjct: 49 LTGHEGPVWRVDWAHPKFG---TILASCSYDGKVMIWKEENG-RWSQIAVHAVHSASVNS 104
Query: 195 VSWS--LTGDILTVSCGDNSVSL--WKEN 219
V W+ G +L V+ D VS+ +KEN
Sbjct: 105 VQWAPHEYGPMLLVASSDGKVSVVEFKEN 133
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 68/103 (66%), Gaps = 4/103 (3%)
Query: 131 WIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWT-SNDYVTWTPFIM--NT 187
++ E+ LE HSDWVRDVAW+P+ L + AS SQDR IIWT N+ W ++
Sbjct: 194 YVLESTLEGHSDWVRDVAWSPT-VLLRSYXASVSQDRTCIIWTQDNEQGPWKKTLLKEEK 252
Query: 188 FDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEM 230
F DV+W SWSL+G++L +S GDN V+LWKEN +G W+ E+
Sbjct: 253 FPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEV 295
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 135 TKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPF-IMNTFDDVVW 193
T LE H + V+ VAWAPS L +A+CS+D+ V +W ++ + ++N+ V
Sbjct: 99 TTLEGHENEVKSVAWAPSGNL----LATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK 154
Query: 194 NVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTS 234
+V W + ++L + D++V L++E D C T G S
Sbjct: 155 HVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHES 195
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 123 VRICG--GDKWIEETKL-ENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVT 179
+RI G GD WI ++ L E H VR VAW+P +AS S D IW N
Sbjct: 40 IRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN----YLASASFDATTCIWKKNQDDF 95
Query: 180 WTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCIT 228
+ ++ V +V+W+ +G++L D SV +W+ + + ++C++
Sbjct: 96 ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVS 144
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Query: 149 WAPSWGLSKCMIASCSQDRKVIIW-TSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVS 207
W +W + ++ASC DR++ IW T D + V V+WS G+ L +
Sbjct: 20 WFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASA 79
Query: 208 CGDNSVSLWKENTDGAWQCITEM-GKTSEQRAIKKELNQSLDKWTPIHSVIST 259
D + +WK+N D ++C+T + G +E +++ W P ++++T
Sbjct: 80 SFDATTCIWKKNQDD-FECVTTLEGHENEVKSV---------AWAPSGNLLAT 122
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 26/111 (23%)
Query: 129 DKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW------------TSND 176
D W+ LE H V +A+ PS +ASCS DR V IW S
Sbjct: 182 DDWVCCATLEGHESTVWSLAFDPS----GQRLASCSDDRTVRIWRQYLPGNEQGVACSGS 237
Query: 177 YVTW------TPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221
+W + F T D+ W LTG L +CGD+++ +++E+ +
Sbjct: 238 DPSWKCICTLSGFHSRTIYDIAWC---QLTG-ALATACGDDAIRVFQEDPN 284
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 133 EETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVV 192
E +LE HS VR VA++P IAS S D+ V +W N + T + V
Sbjct: 8 ERNRLEAHSSSVRGVAFSPD----GQTIASASDDKTVKLWNRNGQLLQT---LTGHSSSV 60
Query: 193 WNVSWSLTGDILTVSCGDNSVSLWKEN 219
W V++S G + + D +V LW N
Sbjct: 61 WGVAFSPDGQTIASASDDKTVKLWNRN 87
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVS 196
L HS VR VA++P IAS S D+ V +W N + T + VW V+
Sbjct: 94 LTGHSSSVRGVAFSPD----GQTIASASDDKTVKLWNRNGQLLQT---LTGHSSSVWGVA 146
Query: 197 WSLTGDILTVSCGDNSVSLWKEN 219
+S G + + D +V LW N
Sbjct: 147 FSPDGQTIASASDDKTVKLWNRN 169
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVS 196
L HS VR VA++P IAS S D+ V +W N + T + VW V+
Sbjct: 504 LTGHSSSVRGVAFSPD----GQTIASASDDKTVKLWNRNGQLLQT---LTGHSSSVWGVA 556
Query: 197 WSLTGDILTVSCGDNSVSLWK 217
+S G + + D +V LW
Sbjct: 557 FSPDGQTIASASSDKTVKLWN 577
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVS 196
L HS VR VA++P IAS S D+ V +W N + T + VW V+
Sbjct: 381 LTGHSSSVRGVAFSPD----GQTIASASDDKTVKLWNRNGQLLQT---LTGHSSSVWGVA 433
Query: 197 WSLTGDILTVSCGDNSVSLWKEN 219
+S + + D +V LW N
Sbjct: 434 FSPDDQTIASASDDKTVKLWNRN 456
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVS 196
L HS V VA+ P IAS S D+ V +W N + T + VW V+
Sbjct: 258 LTGHSSSVNGVAFRPD----GQTIASASDDKTVKLWNRNGQLLQT---LTGHSSSVWGVA 310
Query: 197 WSLTGDILTVSCGDNSVSLWKEN 219
+S G + + D +V LW N
Sbjct: 311 FSPDGQTIASASDDKTVKLWNRN 333
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVS 196
L HS V VA++P IAS S D+ V +W N + T + VW V+
Sbjct: 135 LTGHSSSVWGVAFSPD----GQTIASASDDKTVKLWNRNGQLLQT---LTGHSSSVWGVA 187
Query: 197 WSLTGDILTVSCGDNSVSLWKEN 219
+S G + + D +V LW N
Sbjct: 188 FSPDGQTIASASDDKTVKLWNRN 210
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVS 196
L HS VR VA++P IAS S D+ V +W N + T + V V+
Sbjct: 463 LTGHSSSVRGVAFSPD----GQTIASASDDKTVKLWNRNGQLLQT---LTGHSSSVRGVA 515
Query: 197 WSLTGDILTVSCGDNSVSLWKEN 219
+S G + + D +V LW N
Sbjct: 516 FSPDGQTIASASDDKTVKLWNRN 538
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVS 196
L HS V VA++P IAS S D+ V +W N T + VW V+
Sbjct: 299 LTGHSSSVWGVAFSPD----GQTIASASDDKTVKLWNRNGQHLQT---LTGHSSSVWGVA 351
Query: 197 WSLTGDILTVSCGDNSVSLWKEN 219
+S G + + D +V LW N
Sbjct: 352 FSPDGQTIASASDDKTVKLWNRN 374
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVS 196
L HS VR VA++P IAS S D+ V +W N + T + V V+
Sbjct: 217 LTGHSSSVRGVAFSPD----GQTIASASDDKTVKLWNRNGQLLQT---LTGHSSSVNGVA 269
Query: 197 WSLTGDILTVSCGDNSVSLWKEN 219
+ G + + D +V LW N
Sbjct: 270 FRPDGQTIASASDDKTVKLWNRN 292
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVS 196
L HS V VA++P IAS S D+ V +W N + T + V V+
Sbjct: 422 LTGHSSSVWGVAFSPD----DQTIASASDDKTVKLWNRNGQLLQT---LTGHSSSVRGVA 474
Query: 197 WSLTGDILTVSCGDNSVSLWKEN 219
+S G + + D +V LW N
Sbjct: 475 FSPDGQTIASASDDKTVKLWNRN 497
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVS 196
L HS V VA++P IAS S D+ V +W N + T + V V+
Sbjct: 53 LTGHSSSVWGVAFSPD----GQTIASASDDKTVKLWNRNGQLLQT---LTGHSSSVRGVA 105
Query: 197 WSLTGDILTVSCGDNSVSLWKEN 219
+S G + + D +V LW N
Sbjct: 106 FSPDGQTIASASDDKTVKLWNRN 128
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVS 196
L HS V VA++P IAS S D+ V +W N + T + V V+
Sbjct: 176 LTGHSSSVWGVAFSPD----GQTIASASDDKTVKLWNRNGQLLQT---LTGHSSSVRGVA 228
Query: 197 WSLTGDILTVSCGDNSVSLWKEN 219
+S G + + D +V LW N
Sbjct: 229 FSPDGQTIASASDDKTVKLWNRN 251
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVS 196
L HS V VA++P IAS S D+ V +W N + T + V V+
Sbjct: 340 LTGHSSSVWGVAFSPD----GQTIASASDDKTVKLWNRNGQLLQT---LTGHSSSVRGVA 392
Query: 197 WSLTGDILTVSCGDNSVSLWKEN 219
+S G + + D +V LW N
Sbjct: 393 FSPDGQTIASASDDKTVKLWNRN 415
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 49/174 (28%)
Query: 99 PACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKC 158
P+ P+ KL V + L + +I R G K KL H +R ++WAPS G
Sbjct: 177 PSRFSPE--KLAV--SALEQAIIYQRGKDG-KLHVAAKLPGHKSLIRSISWAPSIGRWYQ 231
Query: 159 MIASCSQDRKVIIW---------TSNDYVTWTPFIMNTFD-------------------- 189
+IA+ +D ++ I+ S + +T + N+ D
Sbjct: 232 LIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQ 291
Query: 190 ---------------DVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCIT 228
VW+VSW+LTG IL+ + D V LWK ++C++
Sbjct: 292 SNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 49/174 (28%)
Query: 99 PACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKC 158
P+ P+ KL V + L + +I R G K KL H +R ++WAPS G
Sbjct: 175 PSRFSPE--KLAV--SALEQAIIYQRGKDG-KLHVAAKLPGHKSLIRSISWAPSIGRWYQ 229
Query: 159 MIASCSQDRKVIIW---------TSNDYVTWTPFIMNTFD-------------------- 189
+IA+ +D ++ I+ S + +T + N+ D
Sbjct: 230 LIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQ 289
Query: 190 ---------------DVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCIT 228
VW+VSW+LTG IL+ + D V LWK ++C++
Sbjct: 290 SNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 343
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Query: 128 GDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTP-FIMN 186
G+KW++ +L+ H+ V V WAP I +C DR +WT TW P ++
Sbjct: 39 GNKWVQVHELKEHNGQVTGVDWAP----DSNRIVTCGTDRNAYVWTLKGR-TWKPTLVIL 93
Query: 187 TFDDVVWNVSWSLTGDILTVSCGDNSVSL-WKENTDGAWQC 226
+ V W+ V G +S+ + E + W C
Sbjct: 94 RINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC 134
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 68/174 (39%), Gaps = 49/174 (28%)
Query: 99 PACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKC 158
P+ P+ KL V + L + +I R G K KL H +R ++WAPS G
Sbjct: 177 PSRFSPE--KLAV--SALEQAIIYQRGKDG-KLHVAAKLPGHKSLIRSISWAPSIGRWYQ 231
Query: 159 MIASCSQDRKVIIW---------TSNDYVTWTPFIMNTFD-------------------- 189
+IA+ +D ++ I+ S + +T + N+ D
Sbjct: 232 LIATGCKDGRIRIFKITEKLSPLASEESLTNSNXFDNSADVDXDAQGRSDSNTEEKAELQ 291
Query: 190 ---------------DVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCIT 228
VW+VSW+LTG IL+ + D V LWK ++C +
Sbjct: 292 SNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCXS 345
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Query: 128 GDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTP-FIMN 186
G+KW++ +L+ H+ V + WAP I +C DR +WT TW P ++
Sbjct: 39 GNKWVQVHELKEHNGQVTGIDWAP----DSNRIVTCGTDRNAYVWTLKGR-TWKPTLVIL 93
Query: 187 TFDDVVWNVSWSLTGDILTVSCGDNSVSL-WKENTDGAWQC 226
+ V W+ V G +S+ + E + W C
Sbjct: 94 RINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC 134
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVS 196
LE H+ V VAW P+ ++ ++ S D +++W + D +++V
Sbjct: 127 LEGHTKRVGIVAWHPT---AQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVD 183
Query: 197 WSLTGDILTVSCGDNSVSL 215
WS G ++ SC D V +
Sbjct: 184 WSRDGALICTSCRDKRVRV 202
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFI--MNTFDDVVWN 194
+E H + V+ VAW+ +A+CS+D+ V IW +++ I + V +
Sbjct: 103 IEGHENEVKGVAWSND----GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKH 158
Query: 195 VSWSLTGDILTVSCGDNSVSLWKENTDGAWQCIT 228
V W + +L S D++V +WK+ D W+C+
Sbjct: 159 VIWHPSEALLASSSYDDTVRIWKDYDDD-WECVA 191
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
Query: 140 HSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTP-----FIMNTFDDVVWN 194
H +R VAW P ++A+ S D V IW + T I+ ++ V
Sbjct: 57 HKKAIRSVAWRPH----TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKG 112
Query: 195 VSWSLTGDILTVSCGDNSVSLWKENTDG-AWQCITEMGKTSEQ 236
V+WS G L D SV +W+ + G ++CI+ + + S+
Sbjct: 113 VAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD 155
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVS 196
LE H+ V VAW P+ ++ ++ S D +++W + D +++V
Sbjct: 127 LEGHTKRVGIVAWHPT---AQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVD 183
Query: 197 WSLTGDILTVSCGDNSVSL 215
WS G ++ SC D V +
Sbjct: 184 WSRDGALICTSCRDKRVRV 202
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 5/89 (5%)
Query: 128 GDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTP-FIMN 186
G+ W +H V V WAP I +CSQDR ++ TW ++
Sbjct: 42 GNGWKHARTFSDHDKIVTCVDWAPK----SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLL 97
Query: 187 TFDDVVWNVSWSLTGDILTVSCGDNSVSL 215
+ V WS D V G +S+
Sbjct: 98 RLNRAATFVRWSPNEDKFAVGSGARVISV 126
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 134 ETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVW 193
E L+ H+D V+D+++ S L +ASCS D + +W + M+ D V
Sbjct: 143 ERTLKGHTDSVQDISFDHSGKL----LASCSADMTIKLWDFQGFECIR--TMHGHDHNVS 196
Query: 194 NVSWSLTGDILTVSCGDNSVSLWKENT 220
+VS GD + + D ++ +W+ T
Sbjct: 197 SVSIMPNGDHIVSASRDKTIKMWEVQT 223
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 140 HSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTP-FIMNTFDDVVWNVSWS 198
HS V DVAW L + + S + D+K++IW + T P +++ V +S++
Sbjct: 228 HSAVVEDVAWHL---LHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Query: 199 LTGD-ILTVSCGDNSVSLW 216
+ IL D +V+LW
Sbjct: 285 PYSEFILATGSADKTVALW 303
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 143 WVRDVAWAPSWGLSKCMIASCSQDRKVIIWT-SNDYVTWTPFIMNTFDDVVWNVSWSLTG 201
++R V ++P +A+ ++DR + IW N + I+ + ++++ + +G
Sbjct: 125 YIRSVCFSPDGKF----LATGAEDRLIRIWDIENRKIV---MILQGHEQDIYSLDYFPSG 177
Query: 202 DILTVSCGDNSVSLW 216
D L GD +V +W
Sbjct: 178 DKLVSGSGDRTVRIW 192
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 10/112 (8%)
Query: 111 VYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCM------IASCS 164
+ S R + L I G K+ K ENHSDWV V ++P + + AS
Sbjct: 133 ILSAGAEREIKLWNILGECKFSSAEK-ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG 191
Query: 165 QDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLW 216
D ++ +W +N + +T + V ++S S G + D + +W
Sbjct: 192 WDGRLKVWNTNFQIRYT---FKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 140 HSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTP-FIMNTFDDVVWNVSWS 198
HS V DVAW L + + S + D+K+ IW + T P +++ V +S++
Sbjct: 228 HSAVVEDVAWHL---LHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Query: 199 LTGD-ILTVSCGDNSVSLW 216
+ IL D +V+LW
Sbjct: 285 PYSEFILATGSADKTVALW 303
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Query: 126 CGGDKWIEETKLENHSDWVR-----DVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTW 180
CG DK ++ K E + D ++ IA+CS D+KV IW S
Sbjct: 639 CGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNS-----M 693
Query: 181 TPFIMNTFDD 190
T +++T+D+
Sbjct: 694 TGELVHTYDE 703
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 18/74 (24%)
Query: 126 CGGDKWIEETKLEN---------HSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSND 176
CG DK ++ K E H D V A++ IA+CS D+KV IW S
Sbjct: 640 CGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD----DSYIATCSADKKVKIWDSA- 694
Query: 177 YVTWTPFIMNTFDD 190
T +++T+D+
Sbjct: 695 ----TGKLVHTYDE 704
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 18/74 (24%)
Query: 126 CGGDKWIEETKLEN---------HSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSND 176
CG DK ++ K E H D V A++ IA+CS D+KV IW S
Sbjct: 633 CGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD----DSYIATCSADKKVKIWDSA- 687
Query: 177 YVTWTPFIMNTFDD 190
T +++T+D+
Sbjct: 688 ----TGKLVHTYDE 697
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 140 HSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTP-FIMNTFDDVVWNVSWS 198
H+ V DVAW L + + S + D+K++IW + + T P ++ V +S++
Sbjct: 230 HTAVVEDVAWH---LLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 286
Query: 199 LTGD-ILTVSCGDNSVSLW 216
+ IL D +V+LW
Sbjct: 287 PYSEFILATGSADKTVALW 305
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW 172
L+ H+ WV +A P + MI S S+D+ +I+W
Sbjct: 34 LKGHNGWVTQIATTPQF---PDMILSASRDKTIIMW 66
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 138 ENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW 172
E+HS+WV V ++P+ S +I SC D+ V +W
Sbjct: 168 ESHSEWVSCVRFSPN--SSNPIIVSCGWDKLVKVW 200
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 140 HSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTP-FIMNTFDDVVWNVSWS 198
H+ V DVAW L + + S + D+K++IW + + T P ++ V +S++
Sbjct: 232 HTAVVEDVAWHL---LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 288
Query: 199 LTGD-ILTVSCGDNSVSLW 216
+ IL D +V+LW
Sbjct: 289 PYSEFILATGSADKTVALW 307
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 149 WAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSC 208
+A WG ++ S SQD K+IIW S Y T + V +++ +G+ V+C
Sbjct: 70 YAMHWGTDSRLLVSASQDGKLIIWDS--YTTNKVHAIPLRSSWVMTCAYAPSGNY--VAC 125
Query: 209 G--DNSVSLWKENT 220
G DN S++ T
Sbjct: 126 GGLDNICSIYNLKT 139
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 149 WAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSC 208
+A WG ++ S SQD K+IIW S Y T + V +++ +G+ V+C
Sbjct: 59 YAMHWGTDSRLLVSASQDGKLIIWDS--YTTNKVHAIPLRSSWVMTCAYAPSGNY--VAC 114
Query: 209 G--DNSVSLWKENT 220
G DN S++ T
Sbjct: 115 GGLDNICSIYNLKT 128
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 140 HSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTP-FIMNTFDDVVWNVSWS 198
H+ V DVAW L + + S + D+K++IW + + T P ++ V +S++
Sbjct: 234 HTAVVEDVAWHL---LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 290
Query: 199 LTGD-ILTVSCGDNSVSLW 216
+ IL D +V+LW
Sbjct: 291 PYSEFILATGSADKTVALW 309
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 149 WAPSWGLSKCMIASCSQDRKVIIWTS 174
+A WG ++ S SQD K+IIW S
Sbjct: 59 YAMHWGTDSRLLVSASQDGKLIIWDS 84
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW 172
L+ H+ WV +A P + MI S S+D+ +I+W
Sbjct: 11 LKGHNGWVTQIATTPQF---PDMILSASRDKTIIMW 43
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 138 ENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW 172
E+HS+WV V ++P+ S +I SC D+ V +W
Sbjct: 145 ESHSEWVSCVRFSPN--SSNPIIVSCGWDKLVKVW 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.130 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,312,623
Number of Sequences: 62578
Number of extensions: 329958
Number of successful extensions: 862
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 761
Number of HSP's gapped (non-prelim): 101
length of query: 271
length of database: 14,973,337
effective HSP length: 97
effective length of query: 174
effective length of database: 8,903,271
effective search space: 1549169154
effective search space used: 1549169154
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)