RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13856
(271 letters)
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 50.5 bits (119), Expect = 6e-08
Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 123 VRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTP 182
+++ + L H +WVR V + I SC+ D+ + +W DY
Sbjct: 229 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF----ILSCADDKTLRVW---DYKNKRC 281
Query: 183 F-IMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWK 217
+N + V ++ + T + D +V +W+
Sbjct: 282 MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
Score = 33.9 bits (76), Expect = 0.017
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 133 EETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW 172
E+ L H V V + P + + + S S+D + +W
Sbjct: 9 EKYALSGHRSPVTRVIFHPVFSV----MVSASEDATIKVW 44
Score = 30.5 bits (67), Expect = 0.18
Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 20/115 (17%)
Query: 123 VRICGGDKWIEETKLENHSDWVRDVAWAP----------------SWGLSKCMIASCSQD 166
VR+ + +L H V ++WAP G + S S+D
Sbjct: 167 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD 226
Query: 167 RKVIIWTSNDYVTWTP-FIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220
+ + +W D T + D+ V V + G + D ++ +W
Sbjct: 227 KTIKMW---DVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN 278
Score = 25.5 bits (54), Expect = 8.1
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 189 DDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220
V V + ++ + D ++ +W T
Sbjct: 17 RSPVTRVIFHPVFSVMVSASEDATIKVWDYET 48
Score = 25.1 bits (53), Expect = 9.4
Identities = 17/115 (14%), Positives = 31/115 (26%), Gaps = 22/115 (19%)
Query: 124 RICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVII------------ 171
++ H +WVR V +IASCS D+ V +
Sbjct: 126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDG----TLIASCSNDQTVRVWVVATKECKAEL 181
Query: 172 ------WTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220
+ + + + G L D ++ +W +T
Sbjct: 182 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 236
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 48.2 bits (113), Expect = 3e-07
Identities = 12/98 (12%), Positives = 33/98 (33%), Gaps = 4/98 (4%)
Query: 123 VRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTP 182
++ + + H + + + P+ A+ S D ++
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFPN----GNAFATGSDDATCRLFDLRADQELMT 263
Query: 183 FIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220
+ + + +VS+S +G +L D + ++W
Sbjct: 264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Score = 38.2 bits (87), Expect = 6e-04
Identities = 13/97 (13%), Positives = 34/97 (35%), Gaps = 8/97 (8%)
Query: 121 ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTW 180
+ D+ + +N + V+++ S L + + D +W D +
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL----LLAGYDDFNCNVW---DALKA 302
Query: 181 TP-FIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLW 216
++ D+ V + + G + D+ + +W
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 33.9 bits (76), Expect = 0.015
Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 6/92 (6%)
Query: 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVS 196
L H + + W L + S SQD K+IIW S T + V +
Sbjct: 51 LRGHLAKIYAMHWGTDSRL----LVSASQDGKLIIWDSYT--TNKVHAIPLRSSWVMTCA 104
Query: 197 WSLTGDILTVSCGDNSVSLWKENTDGAWQCIT 228
++ +G+ + DN S++ T ++
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVS 136
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 45.6 bits (106), Expect = 3e-06
Identities = 10/79 (12%), Positives = 22/79 (27%), Gaps = 7/79 (8%)
Query: 139 NHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWS 198
H V + +A S +D + W + V + S
Sbjct: 263 LHESCVLSLKFAYCGKW----FVSTGKDNLLNAW---RTPYGASIFQSKESSSVLSCDIS 315
Query: 199 LTGDILTVSCGDNSVSLWK 217
+ + GD ++++
Sbjct: 316 VDDKYIVTGSGDKKATVYE 334
Score = 33.2 bits (74), Expect = 0.025
Identities = 13/91 (14%), Positives = 27/91 (29%), Gaps = 8/91 (8%)
Query: 139 NHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTF---DDVVWNV 195
NH + V V + + + V +W + +P D+ + +
Sbjct: 49 NHGEVVCAVTISN----PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSC 103
Query: 196 SWSLTGDILTVSCGDNSVSLWKENTDGAWQC 226
G L V +++S+W
Sbjct: 104 KLLPDGCTLIVGGEASTLSIWDLAAPTPRIK 134
Score = 29.8 bits (65), Expect = 0.34
Identities = 6/40 (15%), Positives = 11/40 (27%), Gaps = 4/40 (10%)
Query: 133 EETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW 172
S V + I + S D+K ++
Sbjct: 298 ASIFQSKESSSVLSCDISV----DDKYIVTGSGDKKATVY 333
Score = 28.2 bits (61), Expect = 0.96
Identities = 12/115 (10%), Positives = 29/115 (25%), Gaps = 4/115 (3%)
Query: 126 CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIM 185
G D + L + + + L C +V
Sbjct: 201 GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ 260
Query: 186 NTFDDVVWN-VSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQRAI 239
+ + ++ G + DN ++ W+ I + ++S +
Sbjct: 261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY---GASIFQSKESSSVLSC 312
Score = 27.1 bits (58), Expect = 2.6
Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 189 DDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQRAI 239
+VV V+ S + + G V +W + G ++++ + I
Sbjct: 51 GEVVCAVTISNPTRHV-YTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYI 100
Score = 26.3 bits (56), Expect = 4.9
Identities = 7/139 (5%), Positives = 25/139 (17%)
Query: 130 KWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFD 189
+ + N +++R P + + + +
Sbjct: 86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY 145
Query: 190 DVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQRAIKKELNQSLDK 249
+ + + + + K LD
Sbjct: 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN 205
Query: 250 WTPIHSVISTNKMKIHPVM 268
+ +++ H
Sbjct: 206 TVRSWDLREGRQLQQHDFT 224
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 40.6 bits (93), Expect = 1e-04
Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 4/103 (3%)
Query: 128 GDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNT 187
G+KW++ +L+ H+ V V WAP I +C DR +WT ++
Sbjct: 38 GNKWVQVHELKEHNGQVTGVDWAPDSNR----IVTCGTDRNAYVWTLKGRTWKPTLVILR 93
Query: 188 FDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEM 230
+ V W+ V G +S+ + W +
Sbjct: 94 INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI 136
Score = 37.9 bits (86), Expect = 0.001
Identities = 12/87 (13%), Positives = 26/87 (29%), Gaps = 4/87 (4%)
Query: 140 HSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSL 199
+ + AW + IA C + +V I+ + + + V V W+
Sbjct: 6 LVEPISCHAWNKD----RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP 61
Query: 200 TGDILTVSCGDNSVSLWKENTDGAWQC 226
+ + D + +W
Sbjct: 62 DSNRIVTCGTDRNAYVWTLKGRTWKPT 88
Score = 32.5 bits (72), Expect = 0.053
Identities = 5/33 (15%), Positives = 10/33 (30%)
Query: 140 HSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW 172
H + V ++ + D + IW
Sbjct: 324 HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 356
Score = 25.6 bits (54), Expect = 7.6
Identities = 3/51 (5%), Positives = 19/51 (37%)
Query: 190 DVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQRAIK 240
+ + +W+ + + ++ V +++++ + Q + +
Sbjct: 8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVD 58
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 39.8 bits (91), Expect = 2e-04
Identities = 11/102 (10%), Positives = 28/102 (27%), Gaps = 7/102 (6%)
Query: 117 TRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSND 176
+ K N + V + ++P + + D + W +
Sbjct: 227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH----KFLYTAGSDGIISCW---N 279
Query: 177 YVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKE 218
T + V + + +IL ++ D++
Sbjct: 280 LQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAA 321
Score = 39.4 bits (90), Expect = 2e-04
Identities = 9/95 (9%), Positives = 24/95 (25%), Gaps = 5/95 (5%)
Query: 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW-TSNDYVTWTPFIMNTFDDVVWNV 195
+ D++ D+ P SK ++ S D + ++ + +
Sbjct: 7 EQAPKDYISDIKIIP----SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62
Query: 196 SWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEM 230
++ D+ L +
Sbjct: 63 NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTN 97
Score = 29.8 bits (65), Expect = 0.29
Identities = 6/39 (15%), Positives = 18/39 (46%)
Query: 184 IMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDG 222
I D + ++ + +L ++ D S++++K +
Sbjct: 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA 44
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 37.5 bits (85), Expect = 0.001
Identities = 17/100 (17%), Positives = 28/100 (28%), Gaps = 14/100 (14%)
Query: 131 WIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSND----------YVTW 180
E H D V V + + S S DR V +W +
Sbjct: 244 DSENESGTGHKDSVYSVVFTRDGQS----VVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 299
Query: 181 TPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220
D V +V+ + + + D V W + +
Sbjct: 300 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 339
Score = 36.7 bits (83), Expect = 0.002
Identities = 24/115 (20%), Positives = 38/115 (33%), Gaps = 14/115 (12%)
Query: 110 TVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKV 169
+V L + E H D+V VA + I S S+DR V
Sbjct: 277 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY----ILSGSKDRGV 332
Query: 170 IIWTSNDYVTWTP-FIMNTFDDVVWNV------SWSLTGDILTVSCGDNSVSLWK 217
+ W D + P ++ + V +V S ++ GD +WK
Sbjct: 333 LFW---DKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384
Score = 26.3 bits (56), Expect = 4.9
Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 11/110 (10%)
Query: 132 IEETKLENHSDWVRDVAWAP------SWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIM 185
+E K +H+ V V ++ + + S V + + P +
Sbjct: 53 VELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENL 112
Query: 186 NTF-----DDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEM 230
NT D + +V +S G L D + +W +
Sbjct: 113 NTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGH 162
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 34.8 bits (78), Expect = 0.009
Identities = 18/108 (16%), Positives = 34/108 (31%), Gaps = 10/108 (9%)
Query: 123 VRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTP 182
V++ + L+ H++ V + + + S S D + +W V
Sbjct: 159 VKVWDPETETCLHTLQGHTNRVYSLQFDGIH------VVSGSLDTSIRVW----DVETGN 208
Query: 183 FIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEM 230
I L +IL D++V +W T Q +
Sbjct: 209 CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGP 256
Score = 30.6 bits (67), Expect = 0.20
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 3/79 (3%)
Query: 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW---TSNDYVTWTPFIMNTFDDVVW 193
L+ + + +K + + S D V +W T VVW
Sbjct: 250 LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVW 309
Query: 194 NVSWSLTGDILTVSCGDNS 212
+ S T + V + +
Sbjct: 310 RIRASNTKLVCAVGSRNGT 328
Score = 28.2 bits (61), Expect = 1.2
Identities = 18/119 (15%), Positives = 29/119 (24%), Gaps = 9/119 (7%)
Query: 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTP-FIMNTFDDVVWNV 195
L+ H D V I S S D + +W VT + VW+
Sbjct: 12 LKGHDDHVITCLQ-----FCGNRIVSGSDDNTLKVW---SAVTGKCLRTLVGHTGGVWSS 63
Query: 196 SWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQRAIKKELNQSLDKWTPIH 254
I + V + K+ ++ S D +
Sbjct: 64 QMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVW 122
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 34.4 bits (77), Expect = 0.013
Identities = 12/96 (12%), Positives = 27/96 (28%), Gaps = 17/96 (17%)
Query: 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFD------- 189
+ H + V+ S+ SCS D + +W + P +
Sbjct: 10 GKAHDADIFSVSACNSF------TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL 63
Query: 190 ---DVVWNVSWSLTGDILTVSCG-DNSVSLWKENTD 221
DV+ + L + + ++ +
Sbjct: 64 HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITRE 99
Score = 28.7 bits (62), Expect = 0.91
Identities = 16/135 (11%), Positives = 35/135 (25%), Gaps = 9/135 (6%)
Query: 115 KLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTS 174
+ L L + S + V + + +IA+ + V I
Sbjct: 158 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-----RGLIATGFNNGTVQISEL 212
Query: 175 NDYVTWTPFIM----NTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEM 230
+ F + + +V +S G +L ++ NS + I +
Sbjct: 213 STLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSL 272
Query: 231 GKTSEQRAIKKELNQ 245
+
Sbjct: 273 SVPTHSSQASLGEFA 287
Score = 27.5 bits (59), Expect = 2.1
Identities = 11/96 (11%), Positives = 22/96 (22%), Gaps = 17/96 (17%)
Query: 123 VRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTP 182
+R T L H D + + +A
Sbjct: 313 LRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD--------------- 357
Query: 183 FIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKE 218
+ + + + L C D S+ ++E
Sbjct: 358 --VKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 391
Score = 26.0 bits (55), Expect = 6.0
Identities = 16/100 (16%), Positives = 29/100 (29%), Gaps = 7/100 (7%)
Query: 126 CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW--TSNDYVTWTPF 183
HS WV +++ S + S D K+ W + + +T
Sbjct: 274 VPTHSSQASLGEFAHSSWVMSLSFNDSG----ETLCSAGWDGKLRFWDVKTKERITTLNM 329
Query: 184 IMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGA 223
+ + ++ GD L G V K+
Sbjct: 330 HCDDIEIEEDILAVDEHGDSL-AEPGVFDVKFLKKGWRSG 368
Score = 25.6 bits (54), Expect = 8.2
Identities = 10/100 (10%), Positives = 26/100 (26%), Gaps = 13/100 (13%)
Query: 144 VRDVAWAPSWGLSKCMIASCSQDRKVIIWTSND--------YVTWTPFIMNTFDDVVWNV 195
V + C++A+ S ++ + + + W +
Sbjct: 66 VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWAL 125
Query: 196 SWSLTGD-----ILTVSCGDNSVSLWKENTDGAWQCITEM 230
W + D L + + +WK + +
Sbjct: 126 KWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 165
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 33.7 bits (75), Expect = 0.020
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 3/90 (3%)
Query: 128 GDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW-TSNDYVTWTPFIMN 186
G K + + +W IAS S D+ + IW + V T +
Sbjct: 221 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT 280
Query: 187 TFDDVVWNVSWSLTGDILTVSCGDNSVSLW 216
+D + W+ L + ++
Sbjct: 281 RIEDQQLGIIWT--KQALVSISANGFINFV 308
Score = 27.2 bits (58), Expect = 2.5
Identities = 14/75 (18%), Positives = 20/75 (26%), Gaps = 4/75 (5%)
Query: 123 VRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTP 182
V + HS +PS AS V IW +
Sbjct: 40 VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSG----YYCASGDVHGNVRIWDTTQTTHILK 95
Query: 183 FIMNTFDDVVWNVSW 197
+ F V ++SW
Sbjct: 96 TTIPVFSGPVKDISW 110
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 33.4 bits (74), Expect = 0.024
Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 2/87 (2%)
Query: 131 WIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDD 190
W T N W A + + ++A+ S D + I++ + +N D
Sbjct: 201 WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKII-KALNAHKD 259
Query: 191 VVWNVSWSLTGDILTVSCGDNSVSLWK 217
V N+ W +++ D + W
Sbjct: 260 GVNNLLWETPSTLVSSG-ADACIKRWN 285
Score = 30.7 bits (67), Expect = 0.15
Identities = 14/132 (10%), Positives = 41/132 (31%), Gaps = 15/132 (11%)
Query: 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVS 196
+ H+ + + P + S S D +++ W+S+ + +++ ++
Sbjct: 9 ISGHNKGITALTVNP--------LISGSYDGRIMEWSSSS-------MHQDHSNLIVSLD 53
Query: 197 WSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQRAIKKELNQSLDKWTPIHSV 256
S + ++S D + Q A+ + L + +
Sbjct: 54 NSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDI 113
Query: 257 ISTNKMKIHPVM 268
I + ++
Sbjct: 114 IKSVRLNSPGSA 125
Score = 26.8 bits (57), Expect = 3.2
Identities = 7/67 (10%), Positives = 19/67 (28%)
Query: 131 WIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDD 190
W + ++HS+ + + + + S + + + F
Sbjct: 36 WSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTA 95
Query: 191 VVWNVSW 197
V+ N
Sbjct: 96 VLTNDDD 102
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 32.3 bits (71), Expect = 0.047
Identities = 15/78 (19%), Positives = 24/78 (30%)
Query: 139 NHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWS 198
N + SW +A+ S D VI+W N I N
Sbjct: 218 NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW 277
Query: 199 LTGDILTVSCGDNSVSLW 216
L + + D+++ W
Sbjct: 278 LNETTIVSAGQDSNIKFW 295
Score = 30.7 bits (67), Expect = 0.16
Identities = 10/102 (9%), Positives = 30/102 (29%), Gaps = 5/102 (4%)
Query: 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVS 196
H+ + ++ + + S + + W + + ++ +
Sbjct: 8 RYGHNKAITALSSSAD----GKTLFSADAEGHINSWDISTG-ISNRVFPDVHATMITGIK 62
Query: 197 WSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQRA 238
+ GD+ TVS D+ + + +S+
Sbjct: 63 TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLG 104
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 31.8 bits (70), Expect = 0.075
Identities = 9/137 (6%), Positives = 34/137 (24%), Gaps = 6/137 (4%)
Query: 84 FHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDW 143
+ + + SP + +T + + + R + + ++ +
Sbjct: 215 EVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLES 274
Query: 144 VRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDI 203
+ P G + ++ + + + ++ S
Sbjct: 275 SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE------VKNNLTDLRLSADRKT 328
Query: 204 LTVSCGDNSVSLWKENT 220
+ V D + +
Sbjct: 329 VMVRKDDGKIYTFPLEK 345
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 31.7 bits (70), Expect = 0.077
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 6/44 (13%)
Query: 129 DKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW 172
+ L HS V + + I S S D ++IW
Sbjct: 255 AGTLCLRTLVEHSGRVFRLQFDEFQ------IVSSSHDDTILIW 292
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 31.8 bits (70), Expect = 0.084
Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 5/99 (5%)
Query: 123 VRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTP 182
+R+ +L H V + +A ++ S S DR V +W
Sbjct: 35 IRVYDSINKKFLLQLSGHDGGVWALKYAHGG-----ILVSGSTDRTVRVWDIKKGCCTHV 89
Query: 183 FIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221
F + ++ + DN++ +WK +
Sbjct: 90 FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 128
Score = 30.6 bits (67), Expect = 0.19
Identities = 11/99 (11%), Positives = 29/99 (29%), Gaps = 9/99 (9%)
Query: 133 EETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTP-FIMNTFDDV 191
+ T L H V + + + D+ + ++ D + ++ D
Sbjct: 4 QRTTLRGHMTSVITCLQ-----FEDNYVITGADDKMIRVY---DSINKKFLLQLSGHDGG 55
Query: 192 VWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEM 230
VW + ++ G +++ S +
Sbjct: 56 VWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHN 94
Score = 29.5 bits (64), Expect = 0.49
Identities = 4/38 (10%), Positives = 14/38 (36%), Gaps = 5/38 (13%)
Query: 135 TKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW 172
+ +D + V + ++A+ +D + +
Sbjct: 318 ANILKDADQIWSVNFKGKT-----LVAAVEKDGQSFLE 350
Score = 29.1 bits (63), Expect = 0.52
Identities = 13/98 (13%), Positives = 28/98 (28%), Gaps = 1/98 (1%)
Query: 123 VRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTP 182
D I LEN GL + D ++
Sbjct: 216 CISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSR 275
Query: 183 FIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220
++ ++ ++ +IL VS +N +++ +
Sbjct: 276 KFSYHHTNLSAITTFYVSDNIL-VSGSENQFNIYNLRS 312
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 31.0 bits (68), Expect = 0.12
Identities = 11/81 (13%), Positives = 26/81 (32%), Gaps = 3/81 (3%)
Query: 139 NHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW--TSNDYVTWTPFIMNTFDDVVWNVS 196
L A+ D + +W T++ V + V
Sbjct: 245 EDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVV 304
Query: 197 WSLTGDILTVSCGDNSVSLWK 217
+ G I+++S D +++ ++
Sbjct: 305 ATGNGRIISLS-LDGTLNFYE 324
Score = 26.8 bits (57), Expect = 2.9
Identities = 15/93 (16%), Positives = 24/93 (25%), Gaps = 8/93 (8%)
Query: 140 HSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPF------IMNTFDDVVW 193
S V V ++P + S + KVI+W +
Sbjct: 62 GSSVVTTVKFSPIK--GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS 119
Query: 194 NVSWSLTGDILTVSCGDNSVSLWKENTDGAWQC 226
++SW G L V + D
Sbjct: 120 DISWDFEGRRLCVVGEGRDNFGVFISWDSGNSL 152
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 31.2 bits (69), Expect = 0.13
Identities = 8/95 (8%), Positives = 26/95 (27%), Gaps = 8/95 (8%)
Query: 122 LVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWT 181
+ + + + ++ +P +R +
Sbjct: 232 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN----QIYGVLNRLAKYDLKQRKLIKA 287
Query: 182 PFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLW 216
+ D + V++ GD L + N ++++
Sbjct: 288 ANL----DHTYYCVAFDKKGDKLYLGGTFNDLAVF 318
>d2yzca1 d.96.1.4 (A:11-141) Urate oxidase (uricase) {Arthrobacter
globiformis [TaxId: 1665]}
Length = 131
Score = 27.0 bits (60), Expect = 1.3
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 193 WNVSWSLTGDILTV-SCGDNSV 213
NV+ L GD + GDN+
Sbjct: 32 LNVTSQLRGDFEAAHTAGDNAH 53
>d1ospo_ b.76.1.1 (O:) Outer surface protein A {Lyme disease
spirochete (Borrelia burgdorferi) [TaxId: 139]}
Length = 251
Score = 26.0 bits (57), Expect = 5.3
Identities = 10/34 (29%), Positives = 24/34 (70%)
Query: 50 RSTISLLQGSVYLRRESNKAGALSPKLNRSATSS 83
++T+ + +G+V L + +K+G +S +LN + +S+
Sbjct: 153 KTTLVVKEGTVTLSKNISKSGEVSVELNDTDSSA 186
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755,
N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 250
Score = 25.2 bits (54), Expect = 8.4
Identities = 12/126 (9%), Positives = 30/126 (23%), Gaps = 1/126 (0%)
Query: 125 ICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVI-IWTSNDYVTWTPF 183
G +T + + G + +D + I TP+
Sbjct: 90 HSGSLPATLKTIGHDVEIIASNFGKRLLEGFYGIKDVTVVKDGEEREIGGKKFKFVMTPW 149
Query: 184 IMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQRAIKKEL 243
+ V + + D+ + E+ + + K +
Sbjct: 150 LHWPDTMVTYLDGILFSCDVGGGYLLPEILDDSNESVVERYLPHVTKYIVTVIGHYKNYI 209
Query: 244 NQSLDK 249
+ +K
Sbjct: 210 LEGAEK 215
>d2ibaa1 d.96.1.4 (A:1-136) Urate oxidase (uricase) {Aspergillus
flavus [TaxId: 5059]}
Length = 136
Score = 24.7 bits (54), Expect = 9.0
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 193 WNVSWSLTGDILTV-SCGDNSV 213
V L G+I T + DNSV
Sbjct: 32 MTVCVLLEGEIETSYTKADNSV 53
>d1aepa_ a.63.1.1 (A:) Apolipophorin-III {African locust (Locusta
migratoria) [TaxId: 7004]}
Length = 153
Score = 24.9 bits (53), Expect = 9.4
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 29 ESPLRIGHTLISCDTQAHIGIRSTISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAA 88
E+ ++ HT+++ + H T+ L L + +A A K+ TS EA
Sbjct: 4 EAVQQLNHTIVNAAHELH----ETLGLPTPDEALNLLTEQANAFKTKIAEVTTSLKQEAE 59
Query: 89 KHLGTV 94
KH G+V
Sbjct: 60 KHQGSV 65
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.130 0.411
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,014,441
Number of extensions: 43456
Number of successful extensions: 198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 77
Length of query: 271
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 187
Effective length of database: 1,254,276
Effective search space: 234549612
Effective search space used: 234549612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.9 bits)