BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13857
(259 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3
Length = 1246
Score = 107 bits (267), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 97/162 (59%), Gaps = 4/162 (2%)
Query: 97 KFYHIYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIAC 156
++ + +R + + L+ LLS + + L +Y +V+VL+ L Y++ G V+L G +AC
Sbjct: 1023 QYLKLRERMQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRVAC 1082
Query: 157 EMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIADM 216
M S +ELL+TEL+F N L PEEIAALLS LV QS +LP +LKQG+ + +
Sbjct: 1083 AM-SSHELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDAGDQLPNTLKQGIERVRAV 1141
Query: 217 NIEVESIEKKHGVERDKSSEE-ADNLNFGLVQVVYEWAMQKP 257
+ ++ G+ +++ EE LNFGLV+VVYEWA P
Sbjct: 1142 AKRIGEVQVACGL--NQTVEEFVGELNFGLVEVVYEWARGMP 1181
>sp|O59801|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1
Length = 1213
Score = 105 bits (261), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 98/167 (58%), Gaps = 3/167 (1%)
Query: 90 VVNTP--ILKFYHIYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGI 147
+++TP + F Y+ E + + L +S + + L DY+ ++KVLQEL YI+++
Sbjct: 979 IISTPNFLTHFALAYQEYELESNIDNLSSYISDQNLELLPDYEQRIKVLQELGYIDAERT 1038
Query: 148 VQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLK 207
V LKG +ACE+ S +EL++TEL+ +N L +F+ EE ALLS VF KT + L+
Sbjct: 1039 VLLKGRVACEINSTSELVLTELILENSLADFSCEETIALLSAFVFDEKTEVEPTISPHLQ 1098
Query: 208 QGMSIIADMNIEVESIEKKHGV-ERDKSSEEADNLNFGLVQVVYEWA 253
+G +I + +V I++ + V ++ ++ FGL++V YEWA
Sbjct: 1099 KGKEMILSVAEKVNQIQEHYQVLYFNEGNDFESQPRFGLMEVCYEWA 1145
>sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SKI2 PE=1 SV=2
Length = 1287
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 8/157 (5%)
Query: 100 HIYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIACEMG 159
H+ K+K + EL HL+S + +SL DY+ ++ VL++ +I+ V LKG +ACE+
Sbjct: 1068 HVIKKK-----IEELYHLMSDQNLSLLPDYEKRLAVLKDTEFIDQNHNVLLKGRVACEIN 1122
Query: 160 SKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTT--TPTELPESLKQGMSIIADMN 217
S EL++TEL+ N L +F PEEI ALLS V++ KT P + L +G I ++
Sbjct: 1123 SGYELVLTELILDNFLGSFEPEEIVALLSVFVYEGKTREEEPPIVTPRLAKGKQRIEEIY 1182
Query: 218 IEVESIEKKHGVERDKSSEE-ADNLNFGLVQVVYEWA 253
++ + H + + E D F ++ VVYEWA
Sbjct: 1183 KKMLCVFNTHQIPLTQDEAEFLDRKRFAMMNVVYEWA 1219
>sp|O14232|MTR4_SCHPO ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mtr4 PE=1 SV=1
Length = 1117
Score = 84.7 bits (208), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 80/140 (57%), Gaps = 2/140 (1%)
Query: 115 KHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNK 174
K L + + + +S+ +VL+ L + S ++++KG +ACE+ S + LL+TEL+F
Sbjct: 911 KKLSKARSIMQLDELNSRKRVLRRLGFTTSDDVIEVKGRVACEISSGDGLLLTELIFNGM 970
Query: 175 LVNFTPEEIAALLSCLVFQSKTTTPTE-LPESLKQGMSIIADMNIEVESIEKKHGVERDK 233
+ TPE+ AALLSCLVFQ K+ + + E L + I+ +M + + K+ E ++
Sbjct: 971 FNDLTPEQCAALLSCLVFQEKSEVENQRMKEELAGPLKILQEMARRIAKVSKESKQELNE 1030
Query: 234 SSEEADNLNFGLVQVVYEWA 253
E ++ L++VVY WA
Sbjct: 1031 -EEYVNSFKPSLMEVVYAWA 1049
>sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1
Length = 1073
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
Query: 97 KFYHIYKRKED-HNRLSELKHLLSH-KGMSLYADYDSKVKVLQELNYINSQGIVQLKGNI 154
+ Y Y RK D H + +LK +S + + D + +VL+ L + I++LKG +
Sbjct: 848 ELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRV 907
Query: 155 ACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIA 214
ACE+ S +ELL+TEL+F PE+ AALLSC FQ + L L + + +
Sbjct: 908 ACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMR 967
Query: 215 DMNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWA 253
++ ++ I K +E + ++ L++VVYEW
Sbjct: 968 EIAAKIAKIMKDSKIEV-VEKDYVESFRHELMEVVYEWC 1005
>sp|P42285|SK2L2_HUMAN Superkiller viralicidic activity 2-like 2 OS=Homo sapiens
GN=SKIV2L2 PE=1 SV=3
Length = 1042
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 66/120 (55%), Gaps = 1/120 (0%)
Query: 134 KVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQ 193
+VL+ L + S ++++KG +ACE+ S +ELL+TE++F + + E+ ALLSC VFQ
Sbjct: 856 RVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSCFVFQ 915
Query: 194 SKTTTPTELPESLKQGMSIIADMNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWA 253
++ +L E L + + + + + + +E D+ + + L+ VVY WA
Sbjct: 916 ENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEET-YLSSFKPHLMDVVYTWA 974
>sp|Q9CZU3|SK2L2_MOUSE Superkiller viralicidic activity 2-like 2 OS=Mus musculus
GN=Skiv2l2 PE=2 SV=1
Length = 1040
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 66/120 (55%), Gaps = 1/120 (0%)
Query: 134 KVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQ 193
+VL+ L + S ++++KG +ACE+ S +ELL+TE++F + + E+ ALLSC VFQ
Sbjct: 854 RVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSSEQATALLSCFVFQ 913
Query: 194 SKTTTPTELPESLKQGMSIIADMNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWA 253
++ +L E L + + + + + + +E D+ + + L+ VVY WA
Sbjct: 914 ENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEET-YLSSFKPHLMDVVYTWA 972
>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3
SV=1
Length = 1026
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 71/127 (55%), Gaps = 6/127 (4%)
Query: 128 DYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALL 187
+ +++ +VL+ L Y+ + + LKG++ACE+ + +EL++TE+L + + AALL
Sbjct: 835 ELNNRKRVLRRLGYLGNDDALVLKGSVACELSASDELILTEMLLKGIFNTLDVAQTAALL 894
Query: 188 SCLVFQSKTTTPTELPESLKQGMSIIADM--NIEVESIEKKHGVERDKSSEEADNLNFGL 245
SC VFQ K P +L L+ +S + + N+ S E K V DK + N GL
Sbjct: 895 SCFVFQDKCAAP-KLATELQTCLSELHEQARNVAKVSNECKMEVMEDKY---VSSFNPGL 950
Query: 246 VQVVYEW 252
+ VVY+W
Sbjct: 951 MDVVYQW 957
>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1
Length = 1030
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 3/98 (3%)
Query: 132 KVKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLV 191
+ +VL+ L + + ++ +KG +ACE+ S +ELL+ EL+FQ PEEIAA LSC V
Sbjct: 841 RQRVLRRLGFCTLENVIDIKGRVACEITSGDELLLVELIFQGFFNQMPPEEIAAALSCFV 900
Query: 192 FQSKTTTPT-ELPESLKQG-MSII-ADMNIEVESIEKK 226
++ K+ T L E K+ ++II A I S+E K
Sbjct: 901 YEDKSEVSTLNLKEPFKKMYLTIIEAAKRIATVSLESK 938
>sp|Q10701|HELY_MYCTU Probable helicase HelY OS=Mycobacterium tuberculosis GN=helY PE=3
SV=1
Length = 906
Score = 45.1 bits (105), Expect = 5e-04, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 76/162 (46%), Gaps = 18/162 (11%)
Query: 102 YKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYIN---SQGIVQLKGNIACEM 158
Y R E N ++L+ ++ SL +D V +L E +I+ + +V G + +
Sbjct: 683 YLRIERDN--AQLERKVAAATNSLARTFDRFVGLLTEREFIDGPATDPVVTDDGRLLARI 740
Query: 159 GSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELP-------ESLKQGMS 211
S+++LL+ E L P E+A ++S +V++++ P L+Q ++
Sbjct: 741 YSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYETRGGDGQGAPFGADVPTPRLRQALT 800
Query: 212 IIADMNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWA 253
+ ++ + + E+ H R S E D+ G V+V+Y W+
Sbjct: 801 QTSRLSTTLRADEQAH---RITPSREPDD---GFVRVIYRWS 836
>sp|Q9ZBD8|HELY_MYCLE Probable helicase HelY OS=Mycobacterium leprae (strain TN) GN=helY
PE=3 SV=1
Length = 920
Score = 42.4 bits (98), Expect = 0.003, Method: Composition-based stats.
Identities = 40/162 (24%), Positives = 76/162 (46%), Gaps = 18/162 (11%)
Query: 102 YKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQG---IVQLKGNIACEM 158
Y R E +N ++L+ ++ SL +D V +L E ++I V G + +
Sbjct: 697 YLRIERYN--AQLQRKVAAATNSLARTFDRIVGLLIERDFIRGPADDPQVTDDGRLLARI 754
Query: 159 GSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTT------TPTELPE-SLKQGMS 211
S+++LL+ E L P E+AA++S ++++++ E P L+Q +
Sbjct: 755 YSESDLLVAECLRTGAWAGLRPAELAAVVSAVLYETRGDDGPGGPVDAEAPTPRLRQALQ 814
Query: 212 IIADMNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWA 253
+ ++ + + E++H R S E D+ G V V+Y WA
Sbjct: 815 HTSRLSATLRADEQRH---RIALSREPDD---GFVGVIYCWA 850
>sp|Q4G384|RBCR_EMIHU Probable RuBisCO transcriptional regulator OS=Emiliania huxleyi
GN=rbcR PE=3 SV=1
Length = 314
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 73 LSMNHTIVNIQVQNIWGVVNTPILKFYHIYKRKEDHNRLSELKHLLSHKGMSLYADYDSK 132
L ++ V+ QVQN+ +NTPI FY R + RL+E H+L + + +
Sbjct: 30 LYISQPAVSRQVQNLERQLNTPI--FY----RDKRKARLTETGHILVKYAEQILSLCEET 83
Query: 133 VKVLQELNYINSQGIV 148
+ L EL INS +V
Sbjct: 84 CQALDELKSINSGTLV 99
>sp|O75694|NU155_HUMAN Nuclear pore complex protein Nup155 OS=Homo sapiens GN=NUP155 PE=1
SV=1
Length = 1391
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 14/133 (10%)
Query: 36 PGPSVNASDPNS-SDPPKPALYYQMLTLLTSDPVMLGSLSMNHTIVNIQVQNIWGVVNTP 94
PGP V +SDPN S+ + QML L L S+++ + ++ + + + V +P
Sbjct: 999 PGPPVLSSDPNMLSNEEAGHHFEQMLKLSQRSKDELFSIALYNWLIQVDLADKLLQVASP 1058
Query: 95 ILKFYHIYKRKEDHNRLSELKHLLSH-----------KGMSLYAD-YDSKVKVLQELNYI 142
L+ + + K D NR+ + L + + +S AD + +++ + Q L YI
Sbjct: 1059 FLEPHLVRMAKVDQNRVRYMDLLWRYYEKNRSFSNAARVLSRLADMHSTEISLQQRLEYI 1118
Query: 143 NSQGIVQLKGNIA 155
++ I+ K + A
Sbjct: 1119 -ARAILSAKSSTA 1130
>sp|Q41046|PHY_PINSY Phytochrome OS=Pinus sylvestris PE=2 SV=1
Length = 1131
Score = 30.8 bits (68), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 18/102 (17%)
Query: 128 DYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLF--QNKLVNFTPEEIAA 185
D +K V LNY+ QGI +L ++A EM E +L N LVN ++A
Sbjct: 596 DSGTKTMVHSRLNYLRLQGIDELS-SVASEMVRLIETATAPILAVDYNGLVNGWNAKVAE 654
Query: 186 LLSCLVFQSKTTTPTELPESLKQGMSIIADMNIE--VESIEK 225
L T LP GMS++ D+ E VE +EK
Sbjct: 655 L-------------TGLPVGEAMGMSLVQDLVFEQSVERVEK 683
>sp|P37199|NU155_RAT Nuclear pore complex protein Nup155 OS=Rattus norvegicus GN=Nup155
PE=1 SV=1
Length = 1390
Score = 30.8 bits (68), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 36 PGPSVNASDPNS-SDPPKPALYYQMLTLLTSDPVMLGSLSMNHTIVNIQVQNIWGVVNTP 94
PGP V +SDPN S+ + QML L L S+++ + ++ + + + +P
Sbjct: 998 PGPPVLSSDPNMLSNEEAGHHFEQMLKLAQRSKDELFSIALYNWLIQADLADKLLQIASP 1057
Query: 95 ILKFYHIYKRKEDHNRLSELKHLLSH-----------KGMSLYAD-YDSKVKVLQELNYI 142
L+ + + K D NR+ + L + + +S AD + +++ + Q L YI
Sbjct: 1058 FLEPHLVRMAKVDQNRVRYMDLLWRYYEKNRSFSSAARVLSKLADMHSTEISLQQRLEYI 1117
Query: 143 NSQGIVQLKGNIA 155
++ I+ K + A
Sbjct: 1118 -ARAILSAKSSTA 1129
>sp|P38008|PMPF_CHLTR Probable outer membrane protein PmpF OS=Chlamydia trachomatis (strain
D/UW-3/Cx) GN=pmpF PE=1 SV=2
Length = 1034
Score = 30.8 bits (68), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 10/67 (14%)
Query: 82 IQVQNIWGVVNTPILKFYHIYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNY 141
IQ W NTP+ K + Y R + S LK L+A+Y ++V +Y
Sbjct: 976 IQNNGSWVTTNTPLAK-HSFYGRGSHSLKFSHLK---------LFANYQAEVATSTVSHY 1025
Query: 142 INSQGIV 148
IN+ G +
Sbjct: 1026 INAGGAL 1032
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,931,064
Number of Sequences: 539616
Number of extensions: 3832522
Number of successful extensions: 11723
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 11702
Number of HSP's gapped (non-prelim): 38
length of query: 259
length of database: 191,569,459
effective HSP length: 115
effective length of query: 144
effective length of database: 129,513,619
effective search space: 18649961136
effective search space used: 18649961136
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)