Query psy13857
Match_columns 259
No_of_seqs 120 out of 637
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 22:11:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13857.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13857hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0948|consensus 100.0 1.8E-41 4E-46 336.0 17.3 229 25-259 733-979 (1041)
2 KOG0947|consensus 100.0 5.1E-36 1.1E-40 302.7 16.0 212 48-259 955-1186(1248)
3 PF08148 DSHCT: DSHCT (NUC185) 100.0 1.2E-30 2.6E-35 224.8 8.6 114 142-258 1-117 (180)
4 COG4581 Superfamily II RNA hel 99.9 5.1E-25 1.1E-29 228.0 15.1 171 83-258 800-978 (1041)
5 PF13234 rRNA_proc-arch: rRNA- 97.3 0.00045 9.7E-09 62.8 5.5 95 21-120 156-267 (268)
6 PF04408 HA2: Helicase associa 93.8 0.068 1.5E-06 41.7 3.3 44 133-177 3-46 (102)
7 smart00847 HA2 Helicase associ 90.5 0.82 1.8E-05 34.2 5.7 60 133-194 3-62 (92)
8 PRK11664 ATP-dependent RNA hel 88.7 2.5 5.4E-05 44.7 9.5 66 127-194 384-449 (812)
9 TIGR01970 DEAH_box_HrpB ATP-de 81.2 3 6.5E-05 44.2 5.8 49 127-176 381-429 (819)
10 PF12246 MKT1_C: Temperature d 76.2 1.8 4E-05 39.1 2.2 45 134-178 1-53 (243)
11 PRK11512 DNA-binding transcrip 72.5 7.9 0.00017 31.5 4.9 64 124-190 66-139 (144)
12 TIGR01967 DEAH_box_HrpA ATP-de 60.8 16 0.00035 40.8 5.8 61 127-191 449-513 (1283)
13 PRK03573 transcriptional regul 59.1 19 0.0004 29.2 4.6 63 124-190 58-130 (144)
14 cd03571 ENTH_epsin ENTH domain 54.5 1E+02 0.0022 25.1 8.2 60 78-147 37-99 (123)
15 COG1846 MarR Transcriptional r 54.1 44 0.00096 25.1 5.8 64 116-183 40-113 (126)
16 COG1202 Superfamily II helicas 50.7 13 0.00029 38.4 2.8 63 127-191 617-682 (830)
17 smart00529 HTH_DTXR Helix-turn 43.9 59 0.0013 24.1 5.0 64 126-191 13-80 (96)
18 PRK11131 ATP-dependent RNA hel 43.6 47 0.001 37.3 5.9 62 127-189 456-523 (1294)
19 PF08461 HTH_12: Ribonuclease 39.2 68 0.0015 23.1 4.4 28 126-153 32-63 (66)
20 PF06969 HemN_C: HemN C-termin 37.6 39 0.00085 23.5 2.9 29 125-153 34-65 (66)
21 COG1643 HrpA HrpA-like helicas 36.8 68 0.0015 34.5 5.7 65 127-194 433-497 (845)
22 PF14947 HTH_45: Winged helix- 36.5 50 0.0011 24.3 3.4 40 119-158 26-68 (77)
23 PF07749 ERp29: Endoplasmic re 31.7 75 0.0016 24.5 3.8 35 105-139 59-94 (95)
24 KOG0925|consensus 31.6 72 0.0016 32.6 4.5 107 127-234 433-578 (699)
25 cd00238 ERp29c ERp29 and ERp38 30.7 79 0.0017 24.4 3.8 34 106-139 58-93 (93)
26 PF12512 DUF3717: Protein of u 28.4 1.7E+02 0.0037 21.9 5.0 62 127-191 7-69 (71)
27 PF13601 HTH_34: Winged helix 27.4 63 0.0014 24.0 2.7 34 127-160 29-73 (80)
28 KOG0286|consensus 27.0 42 0.00092 31.9 2.0 54 103-156 3-57 (343)
29 PF03444 HrcA_DNA-bdg: Winged 26.3 63 0.0014 24.5 2.5 29 128-156 39-73 (78)
30 PRK01736 hypothetical protein; 25.3 2E+02 0.0044 25.0 5.9 12 244-255 98-109 (190)
31 PF04977 DivIC: Septum formati 23.3 2E+02 0.0043 20.4 4.7 19 129-147 54-73 (80)
32 smart00863 tRNA_SAD Threonyl a 23.2 48 0.001 21.3 1.2 19 6-24 21-39 (44)
33 KOG0920|consensus 22.9 99 0.0022 33.6 4.0 61 127-188 592-653 (924)
34 PRK05417 glutathione-dependent 21.7 1.3E+02 0.0028 26.5 3.9 24 225-254 160-183 (191)
35 COG3079 Uncharacterized protei 21.2 87 0.0019 27.4 2.6 73 176-255 20-108 (186)
36 PF09339 HTH_IclR: IclR helix- 20.0 1.3E+02 0.0028 20.0 2.9 23 123-145 29-51 (52)
No 1
>KOG0948|consensus
Probab=100.00 E-value=1.8e-41 Score=335.95 Aligned_cols=229 Identities=21% Similarity=0.348 Sum_probs=195.7
Q ss_pred hhhhhhccccccCCCCCCCCCCCCCCChHHHHHHHHHhhCCCCc------ccCCCCCChH----H---HHHHHHHHhcCC
Q psy13857 25 RRVLIFTDTTTPGPSVNASDPNSSDPPKPALYYQMLTLLTSDPV------MLGSLSMNHT----I---VNIQVQNIWGVV 91 (259)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------~~~~~~~~~~----~---~~~~~~~L~~hp 91 (259)
+.|..|.+..+-.| .++.+..++...+..+.+....-|. |+..-.+-+. + +..+..+|..||
T Consensus 733 ~~i~~is~~r~~iP-----~dl~~~d~r~~~~k~v~e~~~rfp~gip~LdPv~dM~I~~~~~~~~~~k~e~lE~~l~~hp 807 (1041)
T KOG0948|consen 733 TLIDAISSIRLYIP-----KDLRSVDARLSVLKAVQEVKSRFPDGIPLLDPVKDMNIKDVEFKKLVKKIESLEARLESHP 807 (1041)
T ss_pred HHHhhhhHHHhcCc-----ccccCcchHHHHHHHHHHHHHhcCCCCCCcChhhccCccchHHHHHHHHHHHHHHhhccCc
Confidence 45555555555444 3556666677777777666532221 3333333321 1 355789999999
Q ss_pred CCCCCChhh----HHHHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHHhHcCcccCCCccchhhHHHhhhcCCchHHH
Q psy13857 92 NTPILKFYH----IYKRKEDHNRLSELKHLLSH-KGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLI 166 (259)
Q Consensus 92 c~~c~~~~~----~~~~~~L~~ei~~L~~~i~~-~sl~l~~ef~~~~~VLr~LgYId~~~~vT~KGRvA~eI~s~dELLl 166 (259)
.|+.++.++ +.++..|..++.+++.++.. ++....+|+++|.+|||+|||++.++++.+||||||||+++|||++
T Consensus 808 ~~k~~~~~~~~~~f~~K~~l~~~ik~lk~~l~~~~~i~~ldELk~RkRVLrrLG~~t~ddvie~KGrvACEIsSgDELlL 887 (1041)
T KOG0948|consen 808 LHKSSELEELYKEFQRKETLRAEIKDLKAELKSSQAILQLDELKNRKRVLRRLGYCTSDDVIELKGRVACEISSGDELLL 887 (1041)
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEcceEEEEecccchHHH
Confidence 999999888 55678899999999999997 6778999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCCCHHHHHHHHhhcccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccccccCChhHH
Q psy13857 167 TELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIADMNIEVESIEKKHGVERDKSSEEADNLNFGLV 246 (259)
Q Consensus 167 TElLf~g~f~~L~P~elAAlLS~fV~e~r~~~~~~l~~~L~~~~~~l~~ia~~I~~ve~~~gl~~~~~~~~~~~~~~~Lm 246 (259)
|||||+|.|++|+|+|+||+|||||||+++.+.+.+.++|..++..|++.|++|++++.+|+++++++ +|+++|+|.||
T Consensus 888 TEliFnG~Fndl~~eq~aaLLSCfVf~eks~e~~~l~~el~~~l~~lqe~ArrIAkVs~ecKlEide~-~Yv~sFkp~LM 966 (1041)
T KOG0948|consen 888 TELIFNGIFNDLPVEQAAALLSCFVFQEKSSEAPKLKEELAGPLRQLQESARRIAKVSKECKLEIDEE-DYVESFKPELM 966 (1041)
T ss_pred HHHHHhccccCCCHHHHHHHHhheeehhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhccccCHH-HHHHhcChHHH
Confidence 99999999999999999999999999999998899999999999999999999999999999999998 99999999999
Q ss_pred HHHHHhhCCCCCC
Q psy13857 247 QVVYEWAMQKPHW 259 (259)
Q Consensus 247 ~vVy~WA~G~sF~ 259 (259)
+|||+||+|++|.
T Consensus 967 dvVy~W~~GatF~ 979 (1041)
T KOG0948|consen 967 DVVYAWAKGATFA 979 (1041)
T ss_pred HHHHHHHccccHH
Confidence 9999999999983
No 2
>KOG0947|consensus
Probab=100.00 E-value=5.1e-36 Score=302.71 Aligned_cols=212 Identities=34% Similarity=0.515 Sum_probs=184.3
Q ss_pred CCCChHHHH---HHHHHhhC----CCCc--ccCCCCC-ChHHH------HHHHHHHhcCCCCCCCChhh----HHHHHHH
Q psy13857 48 SDPPKPALY---YQMLTLLT----SDPV--MLGSLSM-NHTIV------NIQVQNIWGVVNTPILKFYH----IYKRKED 107 (259)
Q Consensus 48 ~~~~~~~~~---~~~~~~~~----~~p~--~~~~~~~-~~~~~------~~~~~~L~~hpc~~c~~~~~----~~~~~~L 107 (259)
.++++.++- ++++..++ ++|. |....+. +++++ +.+.+.+.+.||+.||+|++ ++++.+.
T Consensus 955 ~D~~~aal~~~~~~~l~l~~~~~~~~~~~epv~~~k~kd~e~~~~~l~~~n~~~~~~~~~~i~c~~f~~h~s~~~~~~~~ 1034 (1248)
T KOG0947|consen 955 ADGQKAALNESTAQVLDLLEGSLETPTWKEPVNDSKLKDDEVVEMLLERTNLQNLIQGNPCISCPKFDQHYSLARREYKI 1034 (1248)
T ss_pred cccHHHHHHHHHHHhhhhhhcCccCcchhhhhhhhhhccHHHHHHHHHHHHHHHHHhcCCccCCccHHHHHHHHHHHHHH
Confidence 356666665 44555553 3444 2222222 23332 23467788999999999999 6788999
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHhHcCcccCCCccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHH
Q psy13857 108 HNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALL 187 (259)
Q Consensus 108 ~~ei~~L~~~i~~~sl~l~~ef~~~~~VLr~LgYId~~~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlL 187 (259)
+.++++|+.+++.+++.+.++|.+|++||+.+||||+.++|++|||+||||++++|||+|||||+|.|.+|+|+|+||+|
T Consensus 1035 ~~ei~~L~~~~sd~~L~l~pey~~RlevLk~~g~vD~~~~V~lkGRvAceI~s~~ELllteli~dn~l~~l~peeiaall 1114 (1248)
T KOG0947|consen 1035 EKEIENLEFELSDQSLLLSPEYHNRLEVLKPLGFVDEMRTVLLKGRVACEINSGNELLLTELIFDNALVDLSPEEIAALL 1114 (1248)
T ss_pred HHHhhhhhhhhhhhhhhhCHHHHHHHHHHhhcCcccccceeeecceeeeeecCCcchhHHHHHHhhhhhhcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccccccCChhHHHHHHHhhCCCCCC
Q psy13857 188 SCLVFQSKTTTPTELPESLKQGMSIIADMNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQKPHW 259 (259)
Q Consensus 188 S~fV~e~r~~~~~~l~~~L~~~~~~l~~ia~~I~~ve~~~gl~~~~~~~~~~~~~~~Lm~vVy~WA~G~sF~ 259 (259)
|+||||++....+.+++.+.++-+++.++++++.+++..|++.++++++|.+.++|+||+|||+||+|+||.
T Consensus 1115 SslV~e~~~e~~~~~~~~l~k~~e~v~~v~~rl~ev~~~~~~~~~~~e~f~~~lrF~l~evVYeWA~G~sf~ 1186 (1248)
T KOG0947|consen 1115 SSLVCEGKTERPPTLTPYLKKGKERVRDVAKRLEEVQSSHQLLQTPEEEFPCELRFGLVEVVYEWARGLSFK 1186 (1248)
T ss_pred HHHHhcCccccCCCCChhhhhHHHHHHHHHHHHHHHHHhhccccCchhhccccccccHHHHHHHHHcCCCHH
Confidence 999999998667889999999999999999999999999999998875678899999999999999999983
No 3
>PF08148 DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961 This C-terminal domain is found in DOB1/SK12/helY-like DEAD box helicases [].; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; PDB: 4A4Z_A 2XGJ_B 3L9O_A.
Probab=99.97 E-value=1.2e-30 Score=224.84 Aligned_cols=114 Identities=35% Similarity=0.726 Sum_probs=90.6
Q ss_pred ccCCCccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhcccccCCCCC-CCC-c-hHHHHHHHHHHHHHH
Q psy13857 142 INSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTP-TEL-P-ESLKQGMSIIADMNI 218 (259)
Q Consensus 142 Id~~~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~fV~e~r~~~~-~~l-~-~~L~~~~~~l~~ia~ 218 (259)
||++++||.|||+||+|+++|||++|||||+|+|++|+|+||||++||||||+++++. ... | +.+.++++++.++++
T Consensus 1 id~~~~vt~kGr~a~~I~~~~eLl~te~l~~g~f~~L~p~elAa~lS~~v~e~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 80 (180)
T PF08148_consen 1 IDEDNVVTLKGRVACEIYSEDELLLTELLFSGVFDDLDPAELAALLSCFVYEPRREDEEERYPPSPRLREALEQLQEIAE 80 (180)
T ss_dssp B-TTS-BSHHHHHHCC--SSTHHHHHHHHHCTCCCCS-HHHHHHHHHHHC-----SS---------HHHHHHHHHHHHHH
T ss_pred CCCCCccCHHHHHHHHHcCcccHHHHHHHHcCCCCCCCHHHHHHHHHHhhcccccCcccccccccHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999999999999998654 222 2 389999999999999
Q ss_pred HHHHHHHHcCCCCCCCccccccCChhHHHHHHHhhCCCCC
Q psy13857 219 EVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQKPH 258 (259)
Q Consensus 219 ~I~~ve~~~gl~~~~~~~~~~~~~~~Lm~vVy~WA~G~sF 258 (259)
+|.+++.+||+ +.+ +|.+.++|++|++||+||+|++|
T Consensus 81 ~l~~~~~~~~l--~~~-~~~~~~~~~l~~~v~~Wa~G~~~ 117 (180)
T PF08148_consen 81 RLAKVEREHGL--DEE-EYVERFDPGLMEVVYAWASGASF 117 (180)
T ss_dssp HHHHHHHHTT---HHH-HHHHCSTTTTHHHHHHHHCT--H
T ss_pred HHHHHHHHhCC--CCc-ccccCCCccHHHHHHHHHCCCCH
Confidence 99999999999 444 78888899999999999999998
No 4
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.92 E-value=5.1e-25 Score=228.01 Aligned_cols=171 Identities=26% Similarity=0.447 Sum_probs=155.3
Q ss_pred HHHHHhcCCCCCCCChhh----HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhHcCcccCCCccchhhHHHhhh
Q psy13857 83 QVQNIWGVVNTPILKFYH----IYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIACEM 158 (259)
Q Consensus 83 ~~~~L~~hpc~~c~~~~~----~~~~~~L~~ei~~L~~~i~~~sl~l~~ef~~~~~VLr~LgYId~~~~vT~KGRvA~eI 158 (259)
+...+..+|.+.|+.+++ ......|.++++++.+.+ ....+.++|..+.++|+.+||++.+.++++|||+||+|
T Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~l~~~~--~~~~~l~~~~~l~~~l~~~g~~~~~~~v~~kGr~a~eI 877 (1041)
T COG4581 800 GRYHLSENPLMNFDGAERLIENELLLSDLQAEIEDLSSSI--EALSFLDDYKTLQEVLKKLGFIEDNAVVLIKGRVAAEI 877 (1041)
T ss_pred cccccCCCccccchHHHHHHHhHhHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHhhcCCCcccccccccceeeee
Confidence 345666777788888888 345688999999999998 77889999999999999999999989999999999999
Q ss_pred cCCchHHHHHHHhhCCCCCCCHHHHHHHHhhcccccCCC----CCCCCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy13857 159 GSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTT----TPTELPESLKQGMSIIADMNIEVESIEKKHGVERDKS 234 (259)
Q Consensus 159 ~s~dELLlTElLf~g~f~~L~P~elAAlLS~fV~e~r~~----~~~~l~~~L~~~~~~l~~ia~~I~~ve~~~gl~~~~~ 234 (259)
++++|||+||||++|.|++|+|+++||++|||||+++++ +.+.+++.+++++..+.+++.+|.+++.++++++..+
T Consensus 878 ~s~~ellL~e~i~~g~f~~l~p~e~aallSa~v~e~~~~d~~~~~~~~~~~l~~~~~~l~e~~~kl~~~~~~~~i~~~~~ 957 (1041)
T COG4581 878 SSEDELLLTELIFSGEFNDLEPEELAALLSAFVFEEKTDDGTAEAPEITPALRDALLRLLELARKLNKDQNSSQIEIYPE 957 (1041)
T ss_pred cCCCchHHHHHHHcCCccCCCHHHHHHHHHheeeccCCcccccccccCCHHHHhHHHHHHHHHHHHHHHHHhcCCcCCcc
Confidence 999999999999999999999999999999999999986 3456789999999999999999999999999999864
Q ss_pred ccccccCChhHHHHHHHhhCCCCC
Q psy13857 235 SEEADNLNFGLVQVVYEWAMQKPH 258 (259)
Q Consensus 235 ~~~~~~~~~~Lm~vVy~WA~G~sF 258 (259)
.+.+.+++|++||.||+|++|
T Consensus 958 ---l~~~~~~lm~vv~~wa~g~s~ 978 (1041)
T COG4581 958 ---LNDFSVGLMEVVYEWARGLSF 978 (1041)
T ss_pred ---cccccccHHHHHHHHHhhcch
Confidence 678899999999999999887
No 5
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=97.26 E-value=0.00045 Score=62.85 Aligned_cols=95 Identities=11% Similarity=0.105 Sum_probs=60.9
Q ss_pred eehhhhhhhhccccccCCCCCCCCCCCCCCChHHHHHHHHHhhCC----CCc--ccCCCCCChHH-------HHHHHHHH
Q psy13857 21 TIWCRRVLIFTDTTTPGPSVNASDPNSSDPPKPALYYQMLTLLTS----DPV--MLGSLSMNHTI-------VNIQVQNI 87 (259)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~p~--~~~~~~~~~~~-------~~~~~~~L 87 (259)
.+=.+.|..|+...+.+| .+..+..-.+...+++.+.... -|+ |.+..++.+.- +..+.++|
T Consensus 156 ~v~l~~I~~ISs~rl~lp-----~dl~~~~~r~~~~~~l~el~~r~~~giP~LDPi~DmkI~d~~~~e~~~k~~~Le~rl 230 (268)
T PF13234_consen 156 PVPLSCISSISSVRLKLP-----KDLRPQEARKQVLKSLQELLKRFPDGIPLLDPIKDMKIKDPEFVELVKKIEALEKRL 230 (268)
T ss_dssp EEECCGEEEEEEEE---------TTTTSCCCHHHHHHHHHHHHHHSSS--TCHHCHHHH----HHHHHHHHHHHHHHHHH
T ss_pred EeeHHHHHHhhceeeeCc-----ccccchHHHHHHHHHHHHHHHhCCCCCCccChHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence 444578899999999988 1234444466666666554422 233 44445665422 23468899
Q ss_pred hcCCCCCCCChhh----HHHHHHHHHHHHHHHHHHhh
Q psy13857 88 WGVVNTPILKFYH----IYKRKEDHNRLSELKHLLSH 120 (259)
Q Consensus 88 ~~hpc~~c~~~~~----~~~~~~L~~ei~~L~~~i~~ 120 (259)
.+||||.||++++ ++++..|+++++.|++++++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~k~~l~~~i~~Lk~~l~~ 267 (268)
T PF13234_consen 231 SSHPLHKCPDFEEHYALYHEKAELQEEIKALKRQLSD 267 (268)
T ss_dssp HHSCHCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999 67889999999999999874
No 6
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=93.78 E-value=0.068 Score=41.67 Aligned_cols=44 Identities=16% Similarity=0.254 Sum_probs=30.0
Q ss_pred HHHHhHcCcccCCCccchhhHHHhhhcCCchHHHHHHHhhCCCCC
Q psy13857 133 VKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLVN 177 (259)
Q Consensus 133 ~~VLr~LgYId~~~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~ 177 (259)
++.|+.+|.||+++.+|..|+.++++-. +.-+---+++...|.-
T Consensus 3 ~~~L~~Lgald~~~~lT~lG~~~~~lPl-~p~~a~~Ll~~~~~~~ 46 (102)
T PF04408_consen 3 LELLKSLGALDENGNLTPLGRKMSQLPL-DPRLAKMLLYGIQFGC 46 (102)
T ss_dssp HHHHHHTTSB-TTS-B-HHHHHHTTSSS--HHHHHHHHHHHHCT-
T ss_pred HHHHHHCCCCCCCCCcCHHHHHHHHCCC-chHhHhHhhhcccccc
Confidence 4679999999999999999999999987 5544444455544444
No 7
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=90.47 E-value=0.82 Score=34.24 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=42.5
Q ss_pred HHHHhHcCcccCCCccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhccccc
Q psy13857 133 VKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQS 194 (259)
Q Consensus 133 ~~VLr~LgYId~~~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~fV~e~ 194 (259)
++.|..+|.||.++.+|..|+..+++-. +.-+ +-+|..+...+=-..++++++|.+..+.
T Consensus 3 ~~~L~~LgAld~~~~lT~lG~~m~~lPl-~Prl-a~~Ll~a~~~~~c~~~~~~i~a~ls~~~ 62 (92)
T smart00847 3 LELLYELGALDDDGRLTPLGRKMAELPL-DPRL-AKMLLAAAELFGCLDEILTIAAMLSVGD 62 (92)
T ss_pred HHHHHHCCCcCCCCCcCHHHHHHHHCCC-ChHH-HHHHHHHHhhcCcHHHHHHHHHHhcCCC
Confidence 4689999999999999999999999977 4433 4444444322114577788887776543
No 8
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=88.69 E-value=2.5 Score=44.72 Aligned_cols=66 Identities=20% Similarity=0.258 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhHcCcccCCCccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhccccc
Q psy13857 127 ADYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQS 194 (259)
Q Consensus 127 ~ef~~~~~VLr~LgYId~~~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~fV~e~ 194 (259)
..+.+-+..|+.+|.||.++.+|..||..+++-. +.-+-.-+|....|. -..-.+||.++++..+.
T Consensus 384 ~~~~~A~~~L~~lgald~~g~lT~~G~~m~~lp~-~Prla~~ll~a~~~~-~~~l~~a~~laall~e~ 449 (812)
T PRK11664 384 AALAAAKRLLQQLGALDGQGRLTARGRKMAALGN-DPRLAAMLVAAKEDD-EAALATAAKLAAILEEP 449 (812)
T ss_pred HHHHHHHHHHHHCCCCCCCCCcCHHHHHHHhcCC-chHHHHHHHHHHhcC-chhhHHHHHHHHhhccC
Confidence 4788899999999999999999999999999976 655555555554443 11113688888877654
No 9
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=81.16 E-value=3 Score=44.23 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhHcCcccCCCccchhhHHHhhhcCCchHHHHHHHhhCCCC
Q psy13857 127 ADYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLV 176 (259)
Q Consensus 127 ~ef~~~~~VLr~LgYId~~~~vT~KGRvA~eI~s~dELLlTElLf~g~f~ 176 (259)
..+.+-+..|+.||.||.++.+|..|+..+++-. +.-+--.+|..-.|.
T Consensus 381 ~~i~~a~~~L~~lgald~~~~lT~~G~~~~~lp~-~p~l~~~ll~~~~~~ 429 (819)
T TIGR01970 381 VALAAARQLLQRLGALDAQGRLTAHGKAMAALGC-HPRLAAMLLSAHSTG 429 (819)
T ss_pred HHHHHHHHHHHHCCCCCCCCCcCHHHHHHHhcCC-CHHHHHHHHHhhhcC
Confidence 4678889999999999999999999999999987 554444444444443
No 10
>PF12246 MKT1_C: Temperature dependent protein affecting M2 dsRNA replication; InterPro: IPR022039 This domain family is found in eukaryotes, and is typically between 231 and 255 amino acids in length. There is a single completely conserved residue P that may be functionally important. MKT1 is required for maintenance of K2 toxin above 30 degrees C in strains with the L-A-HN variant of the L-A double-stranded RNA virus of Saccharomyces cerevisiae. MKT1 is a 93 kDa protein with serine-rich regions and the retroviral protease signature, DTG. This family is the C-terminal region of MKT1.
Probab=76.22 E-value=1.8 Score=39.07 Aligned_cols=45 Identities=22% Similarity=0.158 Sum_probs=38.4
Q ss_pred HHHhHcCcccCCCccchhhHHHhhhcCC--------chHHHHHHHhhCCCCCC
Q psy13857 134 KVLQELNYINSQGIVQLKGNIACEMGSK--------NELLITELLFQNKLVNF 178 (259)
Q Consensus 134 ~VLr~LgYId~~~~vT~KGRvA~eI~s~--------dELLlTElLf~g~f~~L 178 (259)
++|.-+||+|+.+.+|.-|+++...... .=+++-|+|+.|+++.=
T Consensus 1 R~L~l~Gyi~~~~~lT~wGk~L~~~~~~~~~~~~~E~~ll~lELlR~g~L~~~ 53 (243)
T PF12246_consen 1 RFLELRGYIDKSHELTPWGKALAKALKSLKPNDLQEALLLLLELLRFGVLTLN 53 (243)
T ss_pred CchhHHhHhcCCCCcCHHHHHHHHHHhccCchhhhhHHHHHHHHHHcCCcCCC
Confidence 3688899999999999999999888754 23889999999999765
No 11
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=72.51 E-value=7.9 Score=31.54 Aligned_cols=64 Identities=20% Similarity=0.204 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHHhHcCcccCC----------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 124 SLYADYDSKVKVLQELNYINSQ----------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 124 ~l~~ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
.-....-+.++-|.+.|||... -.+|.+|+-+.+--. -.+.+-+.+.+|.+++++|++++...+
T Consensus 66 i~~~tvsr~l~~Le~~GlI~R~~~~~DrR~~~l~LT~~G~~~~~~~~---~~~~~~~~~~l~~~ls~ee~~~l~~~L 139 (144)
T PRK11512 66 VDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAAICEQCH---QLVGQDLHQELTKNLTADEVATLEHLL 139 (144)
T ss_pred CCHHHHHHHHHHHHHCCCEEeccCcccCCeeEeEEChhHHHHHHHHH---HHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 3445667888999999999742 278999997653311 112234566688999999999876543
No 12
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=60.76 E-value=16 Score=40.75 Aligned_cols=61 Identities=16% Similarity=0.281 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhHcCcccCCC---ccchhhHHHhhhcCCchHHHHHHHhhC-CCCCCCHHHHHHHHhhcc
Q psy13857 127 ADYDSKVKVLQELNYINSQG---IVQLKGNIACEMGSKNELLITELLFQN-KLVNFTPEEIAALLSCLV 191 (259)
Q Consensus 127 ~ef~~~~~VLr~LgYId~~~---~vT~KGRvA~eI~s~dELLlTElLf~g-~f~~L~P~elAAlLS~fV 191 (259)
..+.+-+..|..||.||.++ .+|..||..+++-. +.-+ +-+|..+ .|.-++ +++.++|++-
T Consensus 449 ~~i~~A~~~L~~LGAld~~~~~~~LT~lGr~ma~LPl-dPrl-armLl~a~~~gcl~--e~l~IaA~Ls 513 (1283)
T TIGR01967 449 RAIRDGFRLLEELGALDDDEAEPQLTPIGRQLAQLPV-DPRL-ARMLLEAHRLGCLQ--EVLIIASALS 513 (1283)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCccccHHHHHHhhcCC-ChHH-HHHHHHhhhcCCHH--HHHHHHHHHc
Confidence 45788899999999999887 79999999999988 4444 4554444 444433 3444444443
No 13
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=59.08 E-value=19 Score=29.16 Aligned_cols=63 Identities=16% Similarity=0.079 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHHhHcCcccCC----------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 124 SLYADYDSKVKVLQELNYINSQ----------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 124 ~l~~ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
.-....-+.++-|.+.|||... -.+|.+|+-+.+--. - ..+-+.+.+|.+++++|+..+...+
T Consensus 58 ~~~~tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~---~-~~~~~~~~~~~~l~~ee~~~l~~~l 130 (144)
T PRK03573 58 IEQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLISEVE---A-VINKTRAEILHGISAEEIEQLITLI 130 (144)
T ss_pred CChhhHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHHHHHHHHHH---H-HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3445667899999999999742 268999998776322 1 2234555578899999998876654
No 14
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=54.48 E-value=1e+02 Score=25.06 Aligned_cols=60 Identities=17% Similarity=0.245 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH---HhHcCcccCCCc
Q psy13857 78 TIVNIQVQNIWGVVNTPILKFYHIYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKV---LQELNYINSQGI 147 (259)
Q Consensus 78 ~~~~~~~~~L~~hpc~~c~~~~~~~~~~~L~~ei~~L~~~i~~~sl~l~~ef~~~~~V---Lr~LgYId~~~~ 147 (259)
.|.+.++.+|..+ ...|..+-+-+--++.-+...+.....++...+.+ |++|.|+|++|.
T Consensus 37 ~Im~~l~kRL~~~----------~k~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~~i~~L~~F~~~d~~g~ 99 (123)
T cd03571 37 EIMSMLWKRLNDK----------GKNWRHVYKALTLLEYLLKNGSERVVDDARENLYIIRTLKDFQYIDENGK 99 (123)
T ss_pred HHHHHHHHHHHhc----------cccHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhccceeeCCCCC
Confidence 5567788888776 33455566666777788888777777777766555 455569998654
No 15
>COG1846 MarR Transcriptional regulators [Transcription]
Probab=54.09 E-value=44 Score=25.06 Aligned_cols=64 Identities=17% Similarity=0.093 Sum_probs=48.6
Q ss_pred HHHhhhhhhhHHHHHHHHHHHhHcCcccC-----C-----CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHH
Q psy13857 116 HLLSHKGMSLYADYDSKVKVLQELNYINS-----Q-----GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEI 183 (259)
Q Consensus 116 ~~i~~~sl~l~~ef~~~~~VLr~LgYId~-----~-----~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~el 183 (259)
.++......-.....+.++-|.+-|||.. | -.+|.+|+-+.+-... ..+-+....|.+++++++
T Consensus 40 ~~la~~l~i~~~~vt~~l~~Le~~glv~r~~~~~DrR~~~l~lT~~G~~~~~~~~~----~~~~~~~~~~~~l~~~e~ 113 (126)
T COG1846 40 KELAERLGLDRSTVTRLLKRLEDKGLIERLRDPEDRRAVLVRLTEKGRELLEQLLP----AAQELLAEILAGLSEEEL 113 (126)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCccccceeeEEECccHHHHHHHhcc----HHHHHHHHhccCCCHHHH
Confidence 33444444455677788999999999975 1 2789999998887775 677778889999999995
No 16
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=50.70 E-value=13 Score=38.38 Aligned_cols=63 Identities=21% Similarity=0.144 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhHcCcccCCC---ccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhcc
Q psy13857 127 ADYDSKVKVLQELNYINSQG---IVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLV 191 (259)
Q Consensus 127 ~ef~~~~~VLr~LgYId~~~---~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~fV 191 (259)
-+.++.+.-|+.+|||+.+| .+|..||+++.=.. .--.+|.|+.|+..+++|=.+|+-+.-|-
T Consensus 617 ~~~~k~l~~Lee~g~i~~~G~~v~~T~yGrava~~Fl--~p~~a~~Ir~~v~~~~~pl~i~~~l~pfE 682 (830)
T COG1202 617 FDPKKALSKLEEYGMIKKKGNIVRPTPYGRAVAMSFL--GPSEAEFIREGVLASMDPLRIAAELEPFE 682 (830)
T ss_pred CCHHHHHHHHHhcCCeeccCCEeeeccccceeEEeec--CchHHHHHHHhhhccCChHhHhhcccccc
Confidence 36688999999999999764 78999998775433 23468999999999999999998776653
No 17
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=43.85 E-value=59 Score=24.09 Aligned_cols=64 Identities=14% Similarity=0.124 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhHcCcccCC----CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhcc
Q psy13857 126 YADYDSKVKVLQELNYINSQ----GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLV 191 (259)
Q Consensus 126 ~~ef~~~~~VLr~LgYId~~----~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~fV 191 (259)
.....+.++-|++.|||... -.+|.+|+-..+--...--.+.+.+.. ..+++++++..++..|-
T Consensus 13 ~stvs~~l~~L~~~glI~r~~~~~~~lT~~g~~~~~~~~~~~~~~~~~l~~--~~~~~~~e~~~l~~~l~ 80 (96)
T smart00529 13 PPTVTQMLKKLEKDGLVEYEPYRGITLTEKGRRLARRLLRKHRLLERFLVD--VLGVDEEEVHEEAERLE 80 (96)
T ss_pred hHHHHHHHHHHHHCCCEEEcCCCceEechhHHHHHHHHHHHHHHHHHHHHH--HhCCCHHHHHHHHHHHH
Confidence 34566778889999999864 267889987643322111223333333 22688888887766553
No 18
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=43.63 E-value=47 Score=37.28 Aligned_cols=62 Identities=19% Similarity=0.155 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhHcCcccCC-----CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCH-HHHHHHHhh
Q psy13857 127 ADYDSKVKVLQELNYINSQ-----GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTP-EEIAALLSC 189 (259)
Q Consensus 127 ~ef~~~~~VLr~LgYId~~-----~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P-~elAAlLS~ 189 (259)
+...+-++.|..+|.||.+ +.+|.-|+..+++.. +.-+--.+|....|.-+++ --|||+||+
T Consensus 456 ~~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPl-dPrlakmLl~a~~~~c~~evl~IaA~Lsv 523 (1294)
T PRK11131 456 RNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPV-DPRLARMVLEAQKHGCVREVMIITSALSI 523 (1294)
T ss_pred HHHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCC-ChHHHHHHHHhhhcCCHHHHHHHHHHHcC
Confidence 4567778999999999864 479999999999988 5544444445555665544 233444543
No 19
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=39.22 E-value=68 Score=23.08 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhHcCcccCCC----ccchhhH
Q psy13857 126 YADYDSKVKVLQELNYINSQG----IVQLKGN 153 (259)
Q Consensus 126 ~~ef~~~~~VLr~LgYId~~~----~vT~KGR 153 (259)
-....++++.|.+-||+...+ .+|.||+
T Consensus 32 e~avRrrLr~me~~Glt~~~g~~G~~iT~~G~ 63 (66)
T PF08461_consen 32 EEAVRRRLRAMERDGLTRKVGRQGRIITEKGL 63 (66)
T ss_pred HHHHHHHHHHHHHCCCccccCCcccccCHHHH
Confidence 367889999999999998642 5788886
No 20
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=37.57 E-value=39 Score=23.53 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHhHcCcccCCC---ccchhhH
Q psy13857 125 LYADYDSKVKVLQELNYINSQG---IVQLKGN 153 (259)
Q Consensus 125 l~~ef~~~~~VLr~LgYId~~~---~vT~KGR 153 (259)
+.+.|...++-|.+-|+|..++ .+|.+|+
T Consensus 34 ~~~~~~~~l~~l~~~Gll~~~~~~l~lT~~G~ 65 (66)
T PF06969_consen 34 FAEEFQKELEELQEDGLLEIDGGRLRLTEKGR 65 (66)
T ss_dssp THHH-HHHHHHHHHTTSEEE-SSEEEE-TTTG
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEECcccC
Confidence 7788889999999999996543 7788887
No 21
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=36.83 E-value=68 Score=34.47 Aligned_cols=65 Identities=23% Similarity=0.192 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhHcCcccCCCccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhccccc
Q psy13857 127 ADYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQS 194 (259)
Q Consensus 127 ~ef~~~~~VLr~LgYId~~~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~fV~e~ 194 (259)
..+..=+..|..||.+|.++.+|.-|+-++.+-. +.=+-..++..+.+.-+ .|.+.+.|++-.+.
T Consensus 433 ~~i~~A~~~L~~LGAld~~g~LT~lG~~ms~lpl-dprLA~mLl~a~~~g~~--~e~~~Ias~Ls~~~ 497 (845)
T COG1643 433 AAIQAALTLLQELGALDDSGKLTPLGKQMSLLPL-DPRLARMLLTAPEGGCL--GEAATIASMLSEQD 497 (845)
T ss_pred HHHHHHHHHHHHcCCcCCCCCCCHHHHHHHhCCC-ChHHHHHHHhccccCcH--HHHHHHHHhhccCC
Confidence 4677788999999999999999999999999988 55555666666653332 45566667776666
No 22
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=36.51 E-value=50 Score=24.27 Aligned_cols=40 Identities=23% Similarity=0.132 Sum_probs=28.8
Q ss_pred hhhhhhhHHHHHHHHHHHhHcCcccCC---CccchhhHHHhhh
Q psy13857 119 SHKGMSLYADYDSKVKVLQELNYINSQ---GIVQLKGNIACEM 158 (259)
Q Consensus 119 ~~~sl~l~~ef~~~~~VLr~LgYId~~---~~vT~KGRvA~eI 158 (259)
......=+..+.+.++.|.+.|+|..+ -.+|.||+-+.+.
T Consensus 26 ~~~~~L~~~~~~~yL~~L~~~gLI~~~~~~Y~lTekG~~~l~~ 68 (77)
T PF14947_consen 26 MYKANLNYSTLKKYLKELEEKGLIKKKDGKYRLTEKGKEFLEE 68 (77)
T ss_dssp HTTST--HHHHHHHHHHHHHTTSEEEETTEEEE-HHHHHHHHH
T ss_pred HHHhCcCHHHHHHHHHHHHHCcCeeCCCCEEEECccHHHHHHH
Confidence 334444567899999999999999764 3889999877654
No 23
>PF07749 ERp29: Endoplasmic reticulum protein ERp29, C-terminal domain; InterPro: IPR011679 ERp29 is a ubiquitously expressed endoplasmic reticulum protein found in mammals []. This protein is found associated with an N-terminal thioredoxin-like domain (IPR006662 from INTERPRO), which is homologous to the domain of human protein disulphide isomerase (PDI). ERp29 may help mediate the chaperone function of PDI. The C-terminal Erp29 domain has a 5-helical bundle fold. ERp29 is thought to form part of the thyroglobulin folding complex []. ; GO: 0005783 endoplasmic reticulum; PDB: 2QC7_B 1G7D_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_A.
Probab=31.67 E-value=75 Score=24.51 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHHhHc
Q psy13857 105 KEDHNRLSELKHLLSH-KGMSLYADYDSKVKVLQEL 139 (259)
Q Consensus 105 ~~L~~ei~~L~~~i~~-~sl~l~~ef~~~~~VLr~L 139 (259)
.-+..|+++|++-+.. -+..=.++|..+++||+.|
T Consensus 59 ~fv~~E~~RL~~lL~~~l~~~K~del~~R~NIL~~F 94 (95)
T PF07749_consen 59 EFVAKEIARLERLLEGKLSPEKKDELQKRLNILSSF 94 (95)
T ss_dssp HHHHHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHc
Confidence 3467788888888883 3445678999999999876
No 24
>KOG0925|consensus
Probab=31.65 E-value=72 Score=32.61 Aligned_cols=107 Identities=15% Similarity=0.152 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhHcCcccCCCccchhhHHHhhhcCCchHHHHHHHhhCCCCCCC-HHHHHHHHhh---cccccCCC----C
Q psy13857 127 ADYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFT-PEEIAALLSC---LVFQSKTT----T 198 (259)
Q Consensus 127 ~ef~~~~~VLr~LgYId~~~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~-P~elAAlLS~---fV~e~r~~----~ 198 (259)
+.+.+-+++|--|+.+|.+|.+|.-|++++|.-- |.-+.-.+|-+-.|+=-+ -=-|+|.||. |+-..... +
T Consensus 433 EtLMrALE~LnYLaaLdDdGnLT~lG~imSEFPL-dPqLAkmLi~S~efnCsnEiLsisAMLsvPncFvRp~~~a~kaAd 511 (699)
T KOG0925|consen 433 ETLMRALEVLNYLAALDDDGNLTSLGEIMSEFPL-DPQLAKMLIGSCEFNCSNEILSISAMLSVPNCFVRPTSSASKAAD 511 (699)
T ss_pred HHHHHHHHHhhhhhhhCCCcccchhhhhhhcCCC-ChHHHHHHhhcCCCCchHHHHHHHhcccCCccccCCChhHHHHHH
Confidence 4566777777777778989999999999999888 666677777777776332 2456666663 44322000 0
Q ss_pred C-------C---CCc--------------h-----H--HHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy13857 199 P-------T---ELP--------------E-----S--LKQGMSIIADMNIEVESIEKKHGVERDKS 234 (259)
Q Consensus 199 ~-------~---~l~--------------~-----~--L~~~~~~l~~ia~~I~~ve~~~gl~~~~~ 234 (259)
+ + .++ + . --.++..-..+.++|.+++.++.++....
T Consensus 512 eak~~faH~dGDHlTLlnVYhAfkq~~~~~~WC~~~flN~ral~~Ad~vR~qL~rim~R~~L~~~st 578 (699)
T KOG0925|consen 512 EAKETFAHIDGDHLTLLNVYHAFKQNNEDPNWCYDNFLNYRALKSADNVRQQLLRIMDRFNLPLCST 578 (699)
T ss_pred HHHHHhccCCcchHHHHHHHHHHHhcCCChhHHHHhcccHHHHHhHHHHHHHHHHHHHHhcCcccCC
Confidence 0 0 000 0 0 12244455677889999999999887655
No 25
>cd00238 ERp29c ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38. ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5.
Probab=30.72 E-value=79 Score=24.45 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhhh--hhhhHHHHHHHHHHHhHc
Q psy13857 106 EDHNRLSELKHLLSHK--GMSLYADYDSKVKVLQEL 139 (259)
Q Consensus 106 ~L~~ei~~L~~~i~~~--sl~l~~ef~~~~~VLr~L 139 (259)
-+..|+++|++-+... +..-.++|..+++||+.|
T Consensus 58 yv~~E~~RL~~iL~~~~ls~~K~del~~R~NIL~~F 93 (93)
T cd00238 58 YVEKELARLERLLEKKGLAPEKADELTRRLNILRSF 93 (93)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC
Confidence 3667899999988873 566889999999999864
No 26
>PF12512 DUF3717: Protein of unknown function (DUF3717) ; InterPro: IPR022191 This family of proteins is found in bacteria. Proteins in this family are typically between 75 and 117 amino acids in length. There is a conserved AIN sequence motif. There are two completely conserved residues (L and Y) that may be functionally important.
Probab=28.38 E-value=1.7e+02 Score=21.85 Aligned_cols=62 Identities=15% Similarity=0.115 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhHcCcc-cCCCccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhcc
Q psy13857 127 ADYDSKVKVLQELNYI-NSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLV 191 (259)
Q Consensus 127 ~ef~~~~~VLr~LgYI-d~~~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~fV 191 (259)
.|.++-+++-|.-.=- +++-.+-..+|.++++|. ++|..-...=-...|+|++.+|+..++-
T Consensus 7 ~dIE~AIN~WR~r~Ps~~d~~~Lcpea~aLA~vYa---lMI~~r~~~v~~~~L~~~a~~A~~~w~~ 69 (71)
T PF12512_consen 7 TDIEAAINYWRARSPSSGDELALCPEARALAEVYA---LMIFQRQQEVDEASLDPEARAAWLAWYD 69 (71)
T ss_pred HHHHHHHHHHHhcCCCCCcccccCHHHHHHHHHHH---HHHHhccccCChhhCCHHHHHHHHHHHh
Confidence 3445555555554444 445678899999999999 7777666666778999999999987653
No 27
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=27.39 E-value=63 Score=24.03 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhHcCcccCC-----------CccchhhHHHhhhcC
Q psy13857 127 ADYDSKVKVLQELNYINSQ-----------GIVQLKGNIACEMGS 160 (259)
Q Consensus 127 ~ef~~~~~VLr~LgYId~~-----------~~vT~KGRvA~eI~s 160 (259)
....+.++.|++-|||... -.+|.+||-|-+-+.
T Consensus 29 g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr~~~~~~~ 73 (80)
T PF13601_consen 29 GNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGREAFERYV 73 (80)
T ss_dssp HHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHHHHHHHHH
Confidence 4667889999999999741 268999998866543
No 28
>KOG0286|consensus
Probab=26.98 E-value=42 Score=31.85 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHH-HHHHHHHHHhHcCcccCCCccchhhHHHh
Q psy13857 103 KRKEDHNRLSELKHLLSHKGMSLYA-DYDSKVKVLQELNYINSQGIVQLKGNIAC 156 (259)
Q Consensus 103 ~~~~L~~ei~~L~~~i~~~sl~l~~-ef~~~~~VLr~LgYId~~~~vT~KGRvA~ 156 (259)
+-..|.+|+++|+.+|++....+.+ .+.++..=|...|.+.-..+-|+||..+.
T Consensus 3 ~~~~l~~Eae~L~~qi~~~r~~~~D~~l~q~a~~~~~~~~i~~~~rr~LkGH~~K 57 (343)
T KOG0286|consen 3 ELEQLRQEAEQLKNQIRDARKKLNDVTLAQIAERLESVGRIQMRTRRTLKGHLNK 57 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhccccceeeeeeeEEEecccccc
Confidence 3456888889999998886666555 57777777888888887778888987653
No 29
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=26.35 E-value=63 Score=24.53 Aligned_cols=29 Identities=24% Similarity=0.189 Sum_probs=22.0
Q ss_pred HHHHHHHHHhHcCcccC------CCccchhhHHHh
Q psy13857 128 DYDSKVKVLQELNYINS------QGIVQLKGNIAC 156 (259)
Q Consensus 128 ef~~~~~VLr~LgYId~------~~~vT~KGRvA~ 156 (259)
.-++.+..|+++|||+. ..++|.||=-+-
T Consensus 39 TIRN~M~~Le~lGlve~~p~~s~GriPT~~aYr~~ 73 (78)
T PF03444_consen 39 TIRNEMADLEELGLVESQPHPSGGRIPTDKAYRAL 73 (78)
T ss_pred HHHHHHHHHHHCCCccCCCCCCCCCCcCHHHHHHH
Confidence 55788899999999984 247888885543
No 30
>PRK01736 hypothetical protein; Reviewed
Probab=25.25 E-value=2e+02 Score=24.99 Aligned_cols=12 Identities=8% Similarity=0.310 Sum_probs=9.0
Q ss_pred hHHHHHHHhhCC
Q psy13857 244 GLVQVVYEWAMQ 255 (259)
Q Consensus 244 ~Lm~vVy~WA~G 255 (259)
.-++++..||+|
T Consensus 98 ~Ra~AL~~W~~G 109 (190)
T PRK01736 98 DRADALAGWVNH 109 (190)
T ss_pred HHHHHHHHHHHH
Confidence 455677999987
No 31
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=23.30 E-value=2e+02 Score=20.38 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=11.7
Q ss_pred HHHHHHHHh-HcCcccCCCc
Q psy13857 129 YDSKVKVLQ-ELNYINSQGI 147 (259)
Q Consensus 129 f~~~~~VLr-~LgYId~~~~ 147 (259)
-+.+-++-| +|||+-++.+
T Consensus 54 ~~~ie~~AR~~lgm~~~~E~ 73 (80)
T PF04977_consen 54 PDYIEKVAREKLGMVKPGEI 73 (80)
T ss_pred HHHHHHHHHHHcCCcCCCCE
Confidence 344445555 8999876543
No 32
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain. The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Probab=23.17 E-value=48 Score=21.28 Aligned_cols=19 Identities=42% Similarity=0.735 Sum_probs=16.0
Q ss_pred CCCCceeeEeecccceehh
Q psy13857 6 SRGPIGVFKITKESRTIWC 24 (259)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~ 24 (259)
+.+-||.|+|++.+...|-
T Consensus 21 ~t~~I~~i~i~~~~~~~~~ 39 (44)
T smart00863 21 NTGEIGAFKILSVSGAYWG 39 (44)
T ss_pred ChhhCcEEEEEEEeeeecC
Confidence 5677999999999887775
No 33
>KOG0920|consensus
Probab=22.93 E-value=99 Score=33.58 Aligned_cols=61 Identities=18% Similarity=0.164 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhHcCcccCCCccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHH-HHHHh
Q psy13857 127 ADYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEI-AALLS 188 (259)
Q Consensus 127 ~ef~~~~~VLr~LgYId~~~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~el-AAlLS 188 (259)
+...+-+..|++.|.+|++..+|.-|+.++.+-. |--+==.+++.+.|.-|+|.-. ||.||
T Consensus 592 ~~v~~a~~~L~~igaL~~~e~LT~LG~~la~lPv-d~~igK~ll~g~if~cLdp~l~iaa~Ls 653 (924)
T KOG0920|consen 592 DAVDLAIERLKQIGALDESEELTPLGLHLASLPV-DVRIGKLLLFGAIFGCLDPALTIAAALS 653 (924)
T ss_pred HHHHHHHHHHHHhccccCcccchHHHHHHHhCCC-ccccchhheehhhccccchhhhHHHHhc
Confidence 4667778999999999999999999999999986 6677778889999999999765 45676
No 34
>PRK05417 glutathione-dependent formaldehyde-activating enzyme; Provisional
Probab=21.71 E-value=1.3e+02 Score=26.53 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=19.1
Q ss_pred HHcCCCCCCCccccccCChhHHHHHHHhhC
Q psy13857 225 KKHGVERDKSSEEADNLNFGLVQVVYEWAM 254 (259)
Q Consensus 225 ~~~gl~~~~~~~~~~~~~~~Lm~vVy~WA~ 254 (259)
++.|++...- ++|.||+++..|..
T Consensus 160 ~~~~~~~~~~------~~~~~~~~~~~~~~ 183 (191)
T PRK05417 160 KELGLEPYDC------LSPALMDAIATHVA 183 (191)
T ss_pred HHcCCCcccc------cCHHHHHHHHHHHH
Confidence 3449987654 99999999999964
No 35
>COG3079 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.18 E-value=87 Score=27.37 Aligned_cols=73 Identities=19% Similarity=0.347 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHhhcccccCCCC------------CCCCchHHHHHHHHHHHHHHHHHHHHHHcCCCC----CCCccccc
Q psy13857 176 VNFTPEEIAALLSCLVFQSKTTT------------PTELPESLKQGMSIIADMNIEVESIEKKHGVER----DKSSEEAD 239 (259)
Q Consensus 176 ~~L~P~elAAlLS~fV~e~r~~~------------~~~l~~~L~~~~~~l~~ia~~I~~ve~~~gl~~----~~~~~~~~ 239 (259)
-.++|+|+=+.+|.++|-.-.+. .-..|..+..++++|... +.+...+-|+.. +.+ +
T Consensus 20 ~~~t~aElHG~LsG~lcgG~~d~sWq~l~~~~tneg~A~p~~l~~~l~~l~~a---~s~~L~d~~F~f~LlLpe~----e 92 (186)
T COG3079 20 IGLTPAELHGLLSGLLCGGLNDSSWQPLLHDLTNEGMAPPHGLLQALEQLLQA---TSQQLEDDGFAFQLLLPEG----E 92 (186)
T ss_pred CCCCHHHHHHHHHhhhhcCCCchhHHHHHHHHhhccCCCcHHHHHHHHHHHHH---HHHHhcCCCeEEEEecCCC----C
Confidence 37899999999999999663221 113456777777766532 222222222211 111 1
Q ss_pred cCChhHHHHHHHhhCC
Q psy13857 240 NLNFGLVQVVYEWAMQ 255 (259)
Q Consensus 240 ~~~~~Lm~vVy~WA~G 255 (259)
..=|..++++..|+++
T Consensus 93 ~~vf~rADAL~eW~nh 108 (186)
T COG3079 93 DVVFDRADALAEWCNH 108 (186)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 1246788999999975
No 36
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=20.04 E-value=1.3e+02 Score=20.01 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHHhHcCcccCC
Q psy13857 123 MSLYADYDSKVKVLQELNYINSQ 145 (259)
Q Consensus 123 l~l~~ef~~~~~VLr~LgYId~~ 145 (259)
..-...-.+++..|.+.|||..+
T Consensus 29 gl~~stv~r~L~tL~~~g~v~~d 51 (52)
T PF09339_consen 29 GLPKSTVHRLLQTLVEEGYVERD 51 (52)
T ss_dssp TS-HHHHHHHHHHHHHTTSEEEC
T ss_pred CcCHHHHHHHHHHHHHCcCeecC
Confidence 33445677899999999999764
Done!