Query psy13857
Match_columns 259
No_of_seqs 120 out of 637
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 22:11:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13857.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13857hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a4z_A Antiviral helicase SKI2 100.0 1E-44 3.5E-49 377.2 15.8 180 80-259 749-935 (997)
2 2xgj_A ATP-dependent RNA helic 100.0 5.4E-44 1.8E-48 372.2 19.2 229 25-259 702-948 (1010)
3 3l9o_A ATP-dependent RNA helic 100.0 2.1E-43 7E-48 370.7 13.5 179 80-259 863-1046(1108)
4 3i4u_A ATP-dependent RNA helic 85.8 0.78 2.7E-05 40.7 4.7 61 127-188 18-79 (270)
5 2xau_A PRE-mRNA-splicing facto 80.5 1.8 6.2E-05 43.7 5.4 62 126-188 488-550 (773)
6 4aik_A Transcriptional regulat 64.8 13 0.00043 29.2 5.8 63 124-190 58-130 (151)
7 4hbl_A Transcriptional regulat 64.5 20 0.00069 27.3 6.9 58 126-190 69-136 (149)
8 3jw4_A Transcriptional regulat 62.2 15 0.00053 27.9 5.8 60 127-190 72-141 (148)
9 3oop_A LIN2960 protein; protei 59.7 11 0.00039 28.4 4.6 62 125-190 64-135 (143)
10 3e6m_A MARR family transcripti 57.5 10 0.00034 29.6 4.0 62 125-190 80-151 (161)
11 3fm5_A Transcriptional regulat 56.4 13 0.00043 28.4 4.3 61 126-190 68-138 (150)
12 3deu_A Transcriptional regulat 55.3 13 0.00043 29.4 4.3 62 125-190 81-152 (166)
13 3ech_A MEXR, multidrug resista 54.2 9.9 0.00034 28.8 3.3 60 127-190 66-135 (142)
14 4b8x_A SCO5413, possible MARR- 54.0 25 0.00087 27.1 5.8 61 125-190 64-134 (147)
15 3nrv_A Putative transcriptiona 50.6 21 0.00071 27.0 4.7 61 126-190 68-138 (148)
16 2fbh_A Transcriptional regulat 48.8 23 0.00077 26.5 4.6 61 126-190 66-136 (146)
17 3eco_A MEPR; mutlidrug efflux 48.8 14 0.00046 27.7 3.3 61 126-190 61-131 (139)
18 2qww_A Transcriptional regulat 48.0 16 0.00053 27.9 3.6 63 126-190 69-143 (154)
19 3kp7_A Transcriptional regulat 47.8 20 0.0007 27.2 4.3 60 127-190 66-137 (151)
20 1lj9_A Transcriptional regulat 47.2 20 0.00068 26.9 4.1 61 126-190 57-127 (144)
21 2nnn_A Probable transcriptiona 44.5 19 0.00063 26.8 3.5 62 125-190 65-136 (140)
22 3s2w_A Transcriptional regulat 43.2 20 0.00067 27.7 3.5 62 125-190 77-148 (159)
23 3cjn_A Transcriptional regulat 43.0 26 0.00089 26.9 4.2 61 126-190 80-150 (162)
24 3hsr_A HTH-type transcriptiona 42.4 50 0.0017 24.7 5.8 59 126-190 64-132 (140)
25 3nqo_A MARR-family transcripti 42.3 32 0.0011 27.7 4.8 61 126-190 71-141 (189)
26 2gxg_A 146AA long hypothetical 41.5 27 0.00092 26.1 4.0 61 126-190 64-134 (146)
27 2fa5_A Transcriptional regulat 40.9 34 0.0011 26.2 4.6 60 126-189 77-146 (162)
28 3bdd_A Regulatory protein MARR 40.7 32 0.0011 25.5 4.3 61 126-190 59-130 (142)
29 3boq_A Transcriptional regulat 40.5 18 0.00062 27.7 2.9 59 128-190 78-146 (160)
30 2pex_A Transcriptional regulat 40.2 60 0.002 24.5 5.9 58 126-189 75-142 (153)
31 3bro_A Transcriptional regulat 40.2 21 0.00072 26.5 3.2 61 126-190 64-134 (141)
32 1s3j_A YUSO protein; structura 39.6 23 0.00077 26.9 3.3 61 126-190 65-135 (155)
33 1r7j_A Conserved hypothetical 39.2 26 0.00089 25.7 3.5 41 118-158 26-69 (95)
34 1jgs_A Multiple antibiotic res 39.1 16 0.00054 27.2 2.3 61 126-189 62-132 (138)
35 2eth_A Transcriptional regulat 38.7 24 0.00083 27.0 3.4 61 126-190 72-142 (154)
36 1z91_A Organic hydroperoxide r 38.2 68 0.0023 23.9 5.9 60 125-190 67-136 (147)
37 3k0l_A Repressor protein; heli 38.1 17 0.0006 28.1 2.5 59 128-190 76-144 (162)
38 2hr3_A Probable transcriptiona 37.8 16 0.00054 27.6 2.1 62 125-190 63-135 (147)
39 3bpv_A Transcriptional regulat 37.0 35 0.0012 25.2 4.0 61 126-190 57-127 (138)
40 3g3z_A NMB1585, transcriptiona 36.7 38 0.0013 25.4 4.2 62 125-190 58-129 (145)
41 3tgn_A ADC operon repressor AD 36.3 34 0.0012 25.6 3.8 64 126-190 65-138 (146)
42 3bja_A Transcriptional regulat 35.5 16 0.00056 27.1 1.8 59 128-190 63-131 (139)
43 2rdp_A Putative transcriptiona 35.4 26 0.0009 26.4 3.1 62 125-190 69-140 (150)
44 3bj6_A Transcriptional regulat 35.4 38 0.0013 25.5 4.0 61 126-190 68-138 (152)
45 2nyx_A Probable transcriptiona 34.6 24 0.00082 27.6 2.8 62 125-190 72-143 (168)
46 2x4h_A Hypothetical protein SS 33.3 50 0.0017 24.7 4.4 59 126-187 45-106 (139)
47 2knz_A Ubiquilin-4; cytoplasm, 32.9 63 0.0022 21.2 4.3 44 126-174 8-51 (53)
48 2p6r_A Afuhel308 helicase; pro 30.3 64 0.0022 31.4 5.6 62 125-188 451-515 (702)
49 4fla_A Regulation of nuclear P 28.8 1.8E+02 0.0061 23.4 7.2 81 49-139 20-105 (152)
50 2fbk_A Transcriptional regulat 28.7 20 0.0007 28.4 1.4 58 128-189 102-169 (181)
51 2bv6_A MGRA, HTH-type transcri 27.6 57 0.0019 24.2 3.8 57 128-190 67-133 (142)
52 2fbi_A Probable transcriptiona 27.6 46 0.0016 24.5 3.2 61 126-190 64-134 (142)
53 2cp8_A NEXT to BRCA1 gene 1 pr 26.3 29 0.001 23.5 1.6 42 128-173 8-49 (54)
54 2bwb_A Ubiquitin-like protein 25.8 88 0.003 20.0 3.9 42 127-173 5-46 (46)
55 3ov9_A Nucleoprotein; orthogon 25.5 47 0.0016 29.2 3.2 30 130-159 212-241 (245)
56 3u2r_A Regulatory protein MARR 25.4 7.8 0.00027 30.4 -1.7 60 127-190 77-146 (168)
57 3cdh_A Transcriptional regulat 25.3 22 0.00074 27.1 1.0 33 126-158 71-113 (155)
58 1okr_A MECI, methicillin resis 25.2 67 0.0023 23.4 3.7 61 126-190 42-120 (123)
59 1deb_A APC protein, adenomatou 24.2 1.6E+02 0.0056 19.6 5.3 36 105-140 13-51 (54)
60 2a61_A Transcriptional regulat 23.2 28 0.00096 26.0 1.2 59 126-188 61-129 (145)
61 2g9w_A Conserved hypothetical 22.2 67 0.0023 24.4 3.3 65 126-190 42-119 (138)
62 2jy5_A Ubiquilin-1; UBA, alter 21.4 70 0.0024 20.9 2.8 42 127-173 10-51 (52)
No 1
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1e-44 Score=377.18 Aligned_cols=180 Identities=31% Similarity=0.505 Sum_probs=155.5
Q ss_pred HHHHHHHHhcCCCCCCCChhh----HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhHcCcccCCCccchhhHHH
Q psy13857 80 VNIQVQNIWGVVNTPILKFYH----IYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIA 155 (259)
Q Consensus 80 ~~~~~~~L~~hpc~~c~~~~~----~~~~~~L~~ei~~L~~~i~~~sl~l~~ef~~~~~VLr~LgYId~~~~vT~KGRvA 155 (259)
++.+++++.+||||.||++++ ++++.+++++++.++++++.+++.++++|+++++||++|||||.+++||+|||||
T Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vL~~l~~~~~~~~v~~kgr~a 828 (997)
T 4a4z_A 749 RTNIRDEIFKLKSIKCPNLSQHIVPKFKAHVIKKKIEELYHLMSDQNLSLLPDYEKRLAVLKDTEFIDQNHNVLLKGRVA 828 (997)
T ss_dssp HHHHHHC------------CCSHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHTTSBCTTCCBCHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCcCCCCcccHHhHHH
Confidence 456788999999999999999 6788999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhcccccCC--CCCCCCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q psy13857 156 CEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKT--TTPTELPESLKQGMSIIADMNIEVESIEKKHGVERDK 233 (259)
Q Consensus 156 ~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~fV~e~r~--~~~~~l~~~L~~~~~~l~~ia~~I~~ve~~~gl~~~~ 233 (259)
|||++++||++|||||+|+|++|+|+||||+|||||||+|+ ++.|.+++.|.+++.++.++|++|++++.+|+++++.
T Consensus 829 ~~i~~~~el~~te~~~~~~~~~l~~~~~~a~ls~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~ 908 (997)
T 4a4z_A 829 CEINSGYELVLTELILDNFLGSFEPEEIVALLSVFVYEGKTREEEPPIVTPRLAKGKQRIEEIYKKMLCVFNTHQIPLTQ 908 (997)
T ss_dssp TTCCSSCHHHHHHHHHSSGGGGCCHHHHHHHHGGGSCCCCCSSCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred hhhcCccHHHHHHHHHhCcccCCCHHHHHHHHhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 99999999999999999999999999999999999999998 4557789999999999999999999999999999864
Q ss_pred C-ccccccCChhHHHHHHHhhCCCCCC
Q psy13857 234 S-SEEADNLNFGLVQVVYEWAMQKPHW 259 (259)
Q Consensus 234 ~-~~~~~~~~~~Lm~vVy~WA~G~sF~ 259 (259)
+ ++|++.|+|+||+|||+||+|+||.
T Consensus 909 ~~~~~~~~~~~~l~~~v~~Wa~g~~f~ 935 (997)
T 4a4z_A 909 DEAEFLDRKRFAMMNVVYEWARGLSFK 935 (997)
T ss_dssp HHHHGGGSCTTTTHHHHHHHHHTCCHH
T ss_pred chhhhccCCChHHHHHHHHHhCCCCHH
Confidence 3 3899999999999999999999983
No 2
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-44 Score=372.22 Aligned_cols=229 Identities=21% Similarity=0.393 Sum_probs=195.9
Q ss_pred hhhhhhccccccCCCCCCCCCCCCCCChHHHHHHHHHh---hC-CCCc--ccCCCCCChHH-------HHHHHHHHhcCC
Q psy13857 25 RRVLIFTDTTTPGPSVNASDPNSSDPPKPALYYQMLTL---LT-SDPV--MLGSLSMNHTI-------VNIQVQNIWGVV 91 (259)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~p~--~~~~~~~~~~~-------~~~~~~~L~~hp 91 (259)
+.|..|+...+.+|.- ..++...+.+...+.+. .. ..|. |.+..++.+.. ++.++++|.+||
T Consensus 702 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 776 (1010)
T 2xgj_A 702 DSIKSIGNLRLYMPKD-----IRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIEDEDFLKLMKKIDVLNTKLSSNP 776 (1010)
T ss_dssp GGEEEEEEEECCCCSS-----TTCSSSHHHHHHHHHHHHHHSSSCCCBCCTTTTSCCCCHHHHHHHHHHHHHHHHHTTSH
T ss_pred hhcceeeeeeEecccc-----cCChHHHHHHHHHHHHHHHhcccCCcccCchhhhccccHHHHHHHHHHHHHHHHHHhCC
Confidence 3466777767777742 34555566666555333 32 2233 45555655321 355789999999
Q ss_pred CCCCCChhh----HHHHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHHhHcCcccCCCccchhhHHHhhhcCCchHHH
Q psy13857 92 NTPILKFYH----IYKRKEDHNRLSELKHLLSH-KGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLI 166 (259)
Q Consensus 92 c~~c~~~~~----~~~~~~L~~ei~~L~~~i~~-~sl~l~~ef~~~~~VLr~LgYId~~~~vT~KGRvA~eI~s~dELLl 166 (259)
||.||++++ ++++.+++++++.+++++++ +++.++++|+++++||++|||||++++||+|||+||+|+++||||+
T Consensus 777 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~l~~~~~~~~v~~kGr~a~~i~~~~el~~ 856 (1010)
T 2xgj_A 777 LTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLL 856 (1010)
T ss_dssp HHHSSSHHHHHHHHHHC-CHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSBCTTCCBCHHHHHHHTCCSSCHHHH
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCcCCCCcccHHHHHHHHhcCccHHHH
Confidence 999999999 56778999999999999999 8888999999999999999999988999999999999999999999
Q ss_pred HHHHhhCCCCCCCHHHHHHHHhhcccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccccccCChhHH
Q psy13857 167 TELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIADMNIEVESIEKKHGVERDKSSEEADNLNFGLV 246 (259)
Q Consensus 167 TElLf~g~f~~L~P~elAAlLS~fV~e~r~~~~~~l~~~L~~~~~~l~~ia~~I~~ve~~~gl~~~~~~~~~~~~~~~Lm 246 (259)
|||||+|+|++|+|+||||+|||||||+|+++.|.+|+.|.++++.++++|++|++++.+|+++++.+ +|++.|+|+||
T Consensus 857 ~e~~~~g~~~~l~p~~~aa~~s~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ 935 (1010)
T 2xgj_A 857 TELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEK-DYVESFRHELM 935 (1010)
T ss_dssp HHHHHHTTTTTCCHHHHHHHHHHHHCCCCCSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHH-HHHHTSCCTTH
T ss_pred HHHHHcCccCCCCHHHHHHHHeeeEeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChh-HhcccCChHHH
Confidence 99999999999999999999999999999888899999999999999999999999999999999876 99999999999
Q ss_pred HHHHHhhCCCCCC
Q psy13857 247 QVVYEWAMQKPHW 259 (259)
Q Consensus 247 ~vVy~WA~G~sF~ 259 (259)
+|||+||+|++|.
T Consensus 936 ~~v~~Wa~g~~~~ 948 (1010)
T 2xgj_A 936 EVVYEWCRGATFT 948 (1010)
T ss_dssp HHHHHHTTTCCHH
T ss_pred HHHHHHhCCCCHH
Confidence 9999999999983
No 3
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-43 Score=370.67 Aligned_cols=179 Identities=25% Similarity=0.490 Sum_probs=149.3
Q ss_pred HHHHHHHHhcCCCCCCCChhh----HHHHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHHhHcCcccCCCccchhhHH
Q psy13857 80 VNIQVQNIWGVVNTPILKFYH----IYKRKEDHNRLSELKHLLSH-KGMSLYADYDSKVKVLQELNYINSQGIVQLKGNI 154 (259)
Q Consensus 80 ~~~~~~~L~~hpc~~c~~~~~----~~~~~~L~~ei~~L~~~i~~-~sl~l~~ef~~~~~VLr~LgYId~~~~vT~KGRv 154 (259)
++.++++|.+||||.||++++ ++++.+|++++++++++++. .++.++++|+++++||++|||||.+++||+||||
T Consensus 863 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~l~~~~~~~~v~~kgr~ 942 (1108)
T 3l9o_A 863 IDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRV 942 (1108)
T ss_dssp HHHHHHHHHHSSCTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHTSCTTTCCCSHHHHH
T ss_pred HHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCcCCCCcCcHHhHH
Confidence 345789999999999999999 67889999999999999998 7888999999999999999999999999999999
Q ss_pred HhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhcccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy13857 155 ACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIADMNIEVESIEKKHGVERDKS 234 (259)
Q Consensus 155 A~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~fV~e~r~~~~~~l~~~L~~~~~~l~~ia~~I~~ve~~~gl~~~~~ 234 (259)
||+|+++||||+|||||+|+|++|+|+||||+|||||||+|+++.|.+++.|.+++.+++++|++|++++.+||++++.+
T Consensus 943 a~~i~~~~el~~~e~~~~~~~~~l~~~~~aa~~s~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 1022 (1108)
T 3l9o_A 943 ACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEK 1022 (1108)
T ss_dssp HHC-CCTTHHHHHHHHHHHCCCSSCCTHHHHHTCC------------------CHHHHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHhcCccHHHHHHHHHhCcccCCCHHHHHHHHhheeeecccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChH
Confidence 99999999999999999999999999999999999999999988888999999999999999999999999999999876
Q ss_pred ccccccCChhHHHHHHHhhCCCCCC
Q psy13857 235 SEEADNLNFGLVQVVYEWAMQKPHW 259 (259)
Q Consensus 235 ~~~~~~~~~~Lm~vVy~WA~G~sF~ 259 (259)
+|++.|+|+||+|||+||+|++|.
T Consensus 1023 -~~~~~~~~~l~~~v~~Wa~g~~f~ 1046 (1108)
T 3l9o_A 1023 -DYVESFRHELMEVVYEWCRGATFT 1046 (1108)
T ss_dssp -HHHHHHCCSCHHHHHHHHC----C
T ss_pred -HhccCCChHHHHHHHHHhCCCCHH
Confidence 899999999999999999999995
No 4
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=85.78 E-value=0.78 Score=40.74 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhHcCcccCCCccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCH-HHHHHHHh
Q psy13857 127 ADYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTP-EEIAALLS 188 (259)
Q Consensus 127 ~ef~~~~~VLr~LgYId~~~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P-~elAAlLS 188 (259)
+...+-++.|..||.||+++.+|.-||..+++-. +.-+--.+|....|.-+++ --|||+||
T Consensus 18 ~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl-~P~lakmLl~a~~~~c~~~~l~iaA~Ls 79 (270)
T 3i4u_A 18 ETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPL-EPMLCKMLIMSVHLGCSEEMLTIVSMLS 79 (270)
T ss_dssp HHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCS-CHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCcCCCCCccHHHHHHHhCCC-CHHHHHHHHHhhhcCCHHHHHHHHHHHC
Confidence 4566778899999999999999999999999987 5544444444445544433 23444554
No 5
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=80.48 E-value=1.8 Score=43.74 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhHcCcccCCCccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCH-HHHHHHHh
Q psy13857 126 YADYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTP-EEIAALLS 188 (259)
Q Consensus 126 ~~ef~~~~~VLr~LgYId~~~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P-~elAAlLS 188 (259)
...+.+-++.|..+|.||+++.+|..||.++++.. +.-+--.++....|.-+++ -.|||+||
T Consensus 488 ~~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl-~p~~~~~l~~~~~~~c~~~~l~i~a~ls 550 (773)
T 2xau_A 488 PETMMRALEELNYLACLDDEGNLTPLGRLASQFPL-DPMLAVMLIGSFEFQCSQEILTIVAMLS 550 (773)
T ss_dssp HHHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSS-CHHHHHHHHHGGGGTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCcccCCCcChhhhhhccccC-CHHHHHHHHhhcccCchhHHHHHHHhcc
Confidence 45678889999999999999999999999999998 5555555555555543333 33444444
No 6
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=64.78 E-value=13 Score=29.17 Aligned_cols=63 Identities=14% Similarity=0.045 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHhHcCcccC-----C-----CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 124 SLYADYDSKVKVLQELNYINS-----Q-----GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 124 ~l~~ef~~~~~VLr~LgYId~-----~-----~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
.-....-++++-|.+.|||.. | -.+|.+|+-+.+--. -...-+.+..|.+++++|++.+...+
T Consensus 58 ~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~~~~----~~~~~~~~~~~~~l~~ee~~~l~~~L 130 (151)
T 4aik_A 58 IEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIEQVD----GVISSTRKEILGGISSDEIAVLSGLI 130 (151)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHHHHH----HHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHHHHH----HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 344566788999999999953 2 268999997664322 12233445578899999998876543
No 7
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=64.50 E-value=20 Score=27.33 Aligned_cols=58 Identities=12% Similarity=0.064 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhHcCcccCC----------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 126 YADYDSKVKVLQELNYINSQ----------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 126 ~~ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
.....+.++-|.+.|||... -.+|.+|+-+.+-. .+.+..-.+.+++++|++.+...+
T Consensus 69 ~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~-------~~~~~~~~~~~l~~~e~~~l~~~l 136 (149)
T 4hbl_A 69 SNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEAV-------FEAISSCLPQEFDTTEYDETKYVF 136 (149)
T ss_dssp HHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHHHH-------HHHHHTTSCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHHH-------HHHHHHHHHhhCCHHHHHHHHHHH
Confidence 45667889999999999752 25899999876421 122333378889998888776544
No 8
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=62.21 E-value=15 Score=27.87 Aligned_cols=60 Identities=25% Similarity=0.168 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhHcCcccCC----------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 127 ADYDSKVKVLQELNYINSQ----------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 127 ~ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
...-+.++-|.+.|||... -.+|.+|+-+.+-.. -...-+...+|.+++++|+..+...+
T Consensus 72 ~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~L 141 (148)
T 3jw4_A 72 ASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFN----NIFLEVEESITKGLTKDEQKQLMSIL 141 (148)
T ss_dssp -CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHHH----HHHHHHHHHTTTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHHHHH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4556788999999999752 368999998765433 12344455688999999998876654
No 9
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=59.73 E-value=11 Score=28.38 Aligned_cols=62 Identities=16% Similarity=0.065 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHhHcCcccC-----C-----CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 125 LYADYDSKVKVLQELNYINS-----Q-----GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 125 l~~ef~~~~~VLr~LgYId~-----~-----~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
-.....++++-|.+.|||.. | -.+|.+|+-+.+-.. =...-+....+.+++++|+..+...+
T Consensus 64 ~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~L 135 (143)
T 3oop_A 64 DTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTELR----DIVEASCEKMFAGVTRTDLEQFTAIL 135 (143)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHHH----HHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34566788999999999964 1 258999998775433 12233445577899999998876544
No 10
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=57.53 E-value=10 Score=29.56 Aligned_cols=62 Identities=13% Similarity=0.123 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHhHcCcccCC----------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 125 LYADYDSKVKVLQELNYINSQ----------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 125 l~~ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
-.....+.++-|.+.|||... -.+|.+|+-+.+-... ...-+....+.+++++|+..+...+
T Consensus 80 ~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~~----~~~~~~~~~~~~l~~~e~~~l~~~L 151 (161)
T 3e6m_A 80 EQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEISP----LINDFHAELVGNVDPDKLQTCIEVL 151 (161)
T ss_dssp CHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHHHH----HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHHHHH----HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 345677889999999999642 2689999988764331 2233444567789999988876544
No 11
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=56.37 E-value=13 Score=28.44 Aligned_cols=61 Identities=8% Similarity=-0.002 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhHcCcccCC----------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 126 YADYDSKVKVLQELNYINSQ----------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 126 ~~ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
.....++++-|.+.|||... -.+|.+|+-+.+-... ...-+....|.+++++|+..+...+
T Consensus 68 ~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~----~~~~~~~~~~~~l~~~e~~~l~~~L 138 (150)
T 3fm5_A 68 PSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDAKA----RVDAAHGRYFEGIPDTVVNQMRDTL 138 (150)
T ss_dssp HHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHHHHH----HHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHHHHH----HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45667788999999999752 3689999987764431 2233344566889999988876554
No 12
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=55.26 E-value=13 Score=29.42 Aligned_cols=62 Identities=15% Similarity=0.088 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHhHcCcccCC----------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 125 LYADYDSKVKVLQELNYINSQ----------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 125 l~~ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
-....-++++-|.+.|||... -.+|.+|+-+.+-... ...-+.+..|.+++++|+..+...+
T Consensus 81 ~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~----~~~~~~~~~~~~l~~~e~~~l~~~L 152 (166)
T 3deu_A 81 EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEMEE----VIHKTRGEILAGISSEEIELLIKLI 152 (166)
T ss_dssp CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHHHH----HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHHHHHH----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345667889999999999742 2589999987764331 2223444466788888888776554
No 13
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=54.17 E-value=9.9 Score=28.79 Aligned_cols=60 Identities=20% Similarity=0.190 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhHcCcccCC----------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 127 ADYDSKVKVLQELNYINSQ----------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 127 ~ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
....+.++-|.+.|||... -.+|.+|+-+.+-... ...-+....+.+++++|+..+...+
T Consensus 66 ~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~~----~~~~~~~~~~~~l~~~e~~~l~~~l 135 (142)
T 3ech_A 66 ALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHAEL----IMSRVHDELFAPLTPVEQATLVHLL 135 (142)
T ss_dssp CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHHHHH----HHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHHHHHH----HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3556788899999999752 3689999987764431 2233344456889999998876654
No 14
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=53.96 E-value=25 Score=27.09 Aligned_cols=61 Identities=16% Similarity=0.193 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHhHcCcccC-----C-----CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 125 LYADYDSKVKVLQELNYINS-----Q-----GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 125 l~~ef~~~~~VLr~LgYId~-----~-----~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
-....-++++-|.+.|||.. | -.+|.+|+-+.+-.. ..+ .+ + ...|.+++++|+..+...+
T Consensus 64 ~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~--~~~-~~-~-~~~l~~l~~ee~~~l~~~L 134 (147)
T 4b8x_A 64 HPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVEAAT--RDL-MA-M-DFGLGAYDAEECGEIFAML 134 (147)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHHHHH--HHH-HH-T-GGGTTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHHHHH--HHH-HH-H-HHHHhCCCHHHHHHHHHHH
Confidence 34567788999999999964 2 268999987765322 222 22 3 3468899999998776544
No 15
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=50.59 E-value=21 Score=26.97 Aligned_cols=61 Identities=25% Similarity=0.184 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhHcCcccCC----------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 126 YADYDSKVKVLQELNYINSQ----------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 126 ~~ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
.....+.++-|.+.|||... -.+|.+|+-+.+-... ...-+....+.+++++|+..+...+
T Consensus 68 ~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~~~~----~~~~~~~~~~~~l~~~e~~~l~~~l 138 (148)
T 3nrv_A 68 KAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASD----FAIEREKQLLEEFEEAEKDQLFILL 138 (148)
T ss_dssp HHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHHHHH----HTHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHHHHH----HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45667888889999999752 2689999987764321 1122344466788999888776543
No 16
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=48.81 E-value=23 Score=26.48 Aligned_cols=61 Identities=11% Similarity=0.039 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhHcCcccCC----------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 126 YADYDSKVKVLQELNYINSQ----------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 126 ~~ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
.....+.++-|.+.|||... -.+|.+|+-..+-.. -..+-+....+.+++++|+..+...+
T Consensus 66 ~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~l 136 (146)
T 2fbh_A 66 GPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADIE----AIAASVRNDVLTGIDESEQALCQQVL 136 (146)
T ss_dssp HHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHHHH----HHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34566788899999999642 267999988765432 12233455577889998888766543
No 17
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=48.75 E-value=14 Score=27.74 Aligned_cols=61 Identities=15% Similarity=0.047 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhHcCcccCC----------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 126 YADYDSKVKVLQELNYINSQ----------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 126 ~~ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
.....+.++-|.+.|||... -.+|.+|+-+.+-... ..+-+....|.+++++|+..+...+
T Consensus 61 ~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~~~~~----~~~~~~~~~~~~l~~~e~~~l~~~l 131 (139)
T 3eco_A 61 GPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTS----IFDEMEQTLVSQLSEEENEQMKANL 131 (139)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHHHHH----HHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHHHHHH----HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45667788899999999641 2689999988764331 2223344566789999988876554
No 18
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=47.95 E-value=16 Score=27.90 Aligned_cols=63 Identities=17% Similarity=0.148 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhHcCcccC--C----------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 126 YADYDSKVKVLQELNYINS--Q----------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 126 ~~ef~~~~~VLr~LgYId~--~----------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
.....++++-|.+.|||.. . -.+|.+|+-+.+-..... +. .-....++.+++++|+..+...+
T Consensus 69 ~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~~~~~~~-~~-~~~~~~~~~~l~~~e~~~l~~~l 143 (154)
T 2qww_A 69 GSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRSTANA-FM-YKAMMKVFENLTENEIEELIRLN 143 (154)
T ss_dssp HHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHHHHSCH-HH-HHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHHHHHhhH-HH-HHHHHHHHhcCCHHHHHHHHHHH
Confidence 4466778999999999986 1 258999987655443231 11 22233355788888887766543
No 19
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=47.81 E-value=20 Score=27.24 Aligned_cols=60 Identities=18% Similarity=0.176 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhHcCcccC----C--------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 127 ADYDSKVKVLQELNYINS----Q--------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 127 ~ef~~~~~VLr~LgYId~----~--------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
....+.++-|.+.|||.. + -.+|.+|+-..+-.. -..+-+....|.+++++|+..+...+
T Consensus 66 ~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~l 137 (151)
T 3kp7_A 66 AAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKERK----AIMSHIASDMTSDFDSKEIEKVRQVL 137 (151)
T ss_dssp SHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHHHHH----HHHHHHHHHTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHHHHH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 456678999999999984 1 268999998765433 12334456678889999988876654
No 20
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=47.25 E-value=20 Score=26.89 Aligned_cols=61 Identities=21% Similarity=0.133 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhHcCcccCC----------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 126 YADYDSKVKVLQELNYINSQ----------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 126 ~~ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
.....+.++-|.+.|||... -.+|.+|+-...-.. -...-+....+.+++++++..+...+
T Consensus 57 ~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~l 127 (144)
T 1lj9_A 57 RTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIV----RENQHSNQVALQGLSEVEISQLADYL 127 (144)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH----HHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHHHHH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34567788999999999641 258999987765332 11222345567788888887766544
No 21
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=44.45 E-value=19 Score=26.77 Aligned_cols=62 Identities=18% Similarity=0.134 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHhHcCcccCC----------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 125 LYADYDSKVKVLQELNYINSQ----------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 125 l~~ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
-.....+.++-|.+.|||... -.+|.+|+-...-.. + ...-+....+.+++++|+..+...+
T Consensus 65 ~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l 136 (140)
T 2nnn_A 65 DAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEAGL--A--AAREINRQALAPLSLQEQETLRGLL 136 (140)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHHHHH--H--HHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 345667788999999999752 268999987654322 1 1223444566789999998876543
No 22
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=43.23 E-value=20 Score=27.68 Aligned_cols=62 Identities=15% Similarity=0.065 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHhHcCcccCC----------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 125 LYADYDSKVKVLQELNYINSQ----------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 125 l~~ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
-.....++++-|.+.|||... -.+|.+|+-+.+-... ...-+....|.+++++|+..+...+
T Consensus 77 ~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~----~~~~~~~~~~~~l~~~e~~~l~~~l 148 (159)
T 3s2w_A 77 DKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPDMKK----IASEWGEILFSSFDDRQRREITNSL 148 (159)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHHHHHH----HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHHHHH----HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345667889999999999641 2689999987764331 1222333456788998888776543
No 23
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=43.00 E-value=26 Score=26.90 Aligned_cols=61 Identities=15% Similarity=0.110 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhHcCcccCC----------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 126 YADYDSKVKVLQELNYINSQ----------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 126 ~~ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
.....+.++-|.+.|||... -.+|.+|+-..+-.. -...-+....+.+++++|+..+...+
T Consensus 80 ~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~l 150 (162)
T 3cjn_A 80 QSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDRLW----PHMRASHDRMFQGITPQERQAFLATL 150 (162)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHHHH----HHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45667788999999999641 268999987665422 11233445567888998887765443
No 24
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=42.41 E-value=50 Score=24.69 Aligned_cols=59 Identities=12% Similarity=0.170 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhHcCcccCC----------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 126 YADYDSKVKVLQELNYINSQ----------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 126 ~~ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
.....+.++-|.+.|||... -.+|.+|+-..+-.. =...++... + +++++|+..+...+
T Consensus 64 ~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~---~~~~~~~~~--~-~l~~~e~~~l~~~L 132 (140)
T 3hsr_A 64 SGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLA---EISVKVFNE--F-NISEREASDIINNL 132 (140)
T ss_dssp HHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHHHHH---HHHHHHHHT--S-CCCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHHHHH---HHHHHHHHh--c-CCCHHHHHHHHHHH
Confidence 45667889999999999642 268999997765433 122233222 3 99999998876654
No 25
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=42.27 E-value=32 Score=27.66 Aligned_cols=61 Identities=20% Similarity=0.220 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhHcCcccC-----C-----CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 126 YADYDSKVKVLQELNYINS-----Q-----GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 126 ~~ef~~~~~VLr~LgYId~-----~-----~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
.....++++-|.+.|||.. | -.+|.+|+-+..-... ...+ +...+|.+++++++..+...+
T Consensus 71 ~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~---~~~~-~~~~~~~~l~~ee~~~l~~~L 141 (189)
T 3nqo_A 71 KQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTCSR---TGIN-FMADVFHEFTKDELETLWSLL 141 (189)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHHH---HHHH-HHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHHH---HHHH-HHHHHHHhCCHHHHHHHHHHH
Confidence 4566788999999999964 2 2689999987754331 1122 334467899999998876665
No 26
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=41.49 E-value=27 Score=26.11 Aligned_cols=61 Identities=16% Similarity=0.174 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhHcCcccC-----C-----CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 126 YADYDSKVKVLQELNYINS-----Q-----GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 126 ~~ef~~~~~VLr~LgYId~-----~-----~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
.....+.++-|.+.|||.. | -.+|.+|+-..+-.. -..+-.....+.+++++++..+...+
T Consensus 64 ~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~l 134 (146)
T 2gxg_A 64 QSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNKGI----EIYKKLANEVTGDLSEDEVILVLDKI 134 (146)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH----HHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHHHHH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3466778899999999963 1 268999998765432 11223344467788888887765543
No 27
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=40.91 E-value=34 Score=26.18 Aligned_cols=60 Identities=18% Similarity=0.145 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhHcCcccCC----------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhh
Q psy13857 126 YADYDSKVKVLQELNYINSQ----------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSC 189 (259)
Q Consensus 126 ~~ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~ 189 (259)
.....+.++-|.+.|||... -.+|.+|+-...-... ...-+....+..++++|+..+...
T Consensus 77 ~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~----~~~~~~~~~~~~l~~~e~~~l~~~ 146 (162)
T 2fa5_A 77 KVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYETVAP----LVNEMEQRLMSVFSAEEQQTLERL 146 (162)
T ss_dssp HHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHHHHH----HHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHHHHHH----HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34667788999999999752 3689999876643221 112233445567888887765544
No 28
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=40.73 E-value=32 Score=25.49 Aligned_cols=61 Identities=21% Similarity=0.122 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhHcCcccCC----------CccchhhHHHh-hhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 126 YADYDSKVKVLQELNYINSQ----------GIVQLKGNIAC-EMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 126 ~~ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~-eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
.....+.++-|.+.|||... -.+|.+|+-.. .-.. +. .+-+....+.+++++++..+...+
T Consensus 59 ~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~~~~~~--~~--~~~~~~~~~~~l~~~e~~~l~~~l 130 (142)
T 3bdd_A 59 RAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREALITNPS--AH--HQAIKTSMNQILTVEESEQFLATL 130 (142)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHTTSCC--HH--HHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHHH--HH--HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34567788999999999642 26899999877 4333 11 122333355678888877765543
No 29
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=40.53 E-value=18 Score=27.73 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=39.0
Q ss_pred HHHHHHHHHhHcCcccCC----------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 128 DYDSKVKVLQELNYINSQ----------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 128 ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
...+.++-|.+.|||... -.+|.+|+-..+-.. + ...-.....|.+++++|+..+...+
T Consensus 78 tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l 146 (160)
T 3boq_A 78 NVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFKQAS--E--AHNRILAELLRAVSDQDMVEASAAL 146 (160)
T ss_dssp CHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHHHHH--H--HHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 445678889999999642 268999998765322 1 1122334467788998887765543
No 30
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=40.25 E-value=60 Score=24.48 Aligned_cols=58 Identities=12% Similarity=0.091 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhHcCcccCC----------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhh
Q psy13857 126 YADYDSKVKVLQELNYINSQ----------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSC 189 (259)
Q Consensus 126 ~~ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~ 189 (259)
.....+.++-|.+.|||... -.+|.+|+-..+-.. + ...++... .+++++|+..+...
T Consensus 75 ~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~-~~~~~~~~---~~l~~~e~~~l~~~ 142 (153)
T 2pex_A 75 SATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSKAG--A-VPEQVFCA---SACSLDELRQLKQE 142 (153)
T ss_dssp HHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGGGST--T-HHHHHHHH---HTCCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHHHHH--H-HHHHHHhc---cCCCHHHHHHHHHH
Confidence 45567788999999999642 267999997665443 2 22333322 57888888776544
No 31
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=40.20 E-value=21 Score=26.55 Aligned_cols=61 Identities=10% Similarity=-0.035 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhHcCcccCC----------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 126 YADYDSKVKVLQELNYINSQ----------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 126 ~~ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
.....+.++-|.+.|||... -.+|.+|+-+.+-... ..+-+....+.+++++++..+...+
T Consensus 64 ~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~~~~~~----~~~~~~~~~~~~l~~~e~~~l~~~l 134 (141)
T 3bro_A 64 SSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETIILS----YMDSDQSQMTSGLNKEEVVFLEKIL 134 (141)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHHHHH----HHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHHHHHHH----HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44667788999999999641 2579999876654331 2234445567889999887765543
No 32
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=39.64 E-value=23 Score=26.92 Aligned_cols=61 Identities=16% Similarity=0.056 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhHcCcccCC----------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 126 YADYDSKVKVLQELNYINSQ----------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 126 ~~ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
.....+.++-|.+.|||... -.+|.+|+-..+-.. + ..+-+....+.+++++++..+...+
T Consensus 65 ~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l 135 (155)
T 1s3j_A 65 PSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEVL--A--GRKAIMARYLSFLTEEEMLQAAHIT 135 (155)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHHHH--H--HHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHHHHH--H--HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45667789999999999641 267999987765432 1 1122333456778888877765543
No 33
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=39.20 E-value=26 Score=25.72 Aligned_cols=41 Identities=22% Similarity=0.184 Sum_probs=30.3
Q ss_pred HhhhhhhhHHHHHHHHHHHhHcCcccCC---CccchhhHHHhhh
Q psy13857 118 LSHKGMSLYADYDSKVKVLQELNYINSQ---GIVQLKGNIACEM 158 (259)
Q Consensus 118 i~~~sl~l~~ef~~~~~VLr~LgYId~~---~~vT~KGRvA~eI 158 (259)
+......-...+.+.++.|++.|||+.. -.+|.||+-+-+.
T Consensus 26 La~~~~ls~~~~~~~l~~L~~~GLI~~~~~~~~LT~kG~~~l~~ 69 (95)
T 1r7j_A 26 IMYGANLSYALTGRYIKMLMDLEIIRQEGKQYMLTKKGEELLED 69 (95)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHHHH
T ss_pred HHHHhCcCHHHHHHHHHHHHHCCCeEEECCeeEEChhHHHHHHH
Confidence 3333344567889999999999999753 3899999966543
No 34
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=39.14 E-value=16 Score=27.24 Aligned_cols=61 Identities=20% Similarity=0.235 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhHcCcccC-----C-----CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhh
Q psy13857 126 YADYDSKVKVLQELNYINS-----Q-----GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSC 189 (259)
Q Consensus 126 ~~ef~~~~~VLr~LgYId~-----~-----~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~ 189 (259)
.....+.++-|.+.|||.. | -.+|.+|+-+.+-.. +. +.+-+.+..+.+++++++..+...
T Consensus 62 ~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~~-~~~~~~~~~~~~l~~~e~~~l~~~ 132 (138)
T 1jgs_A 62 LGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCH--QL-VGQDLHQELTKNLTADEVATLEYL 132 (138)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHHHH--HH-HHHHHHHHHHTTTTTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHHHHH--HH-HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3456778899999999964 1 268999988765322 11 111222334566777777666544
No 35
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=38.66 E-value=24 Score=26.98 Aligned_cols=61 Identities=15% Similarity=0.135 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhHcCcccCC----------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 126 YADYDSKVKVLQELNYINSQ----------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 126 ~~ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
.....+.++-|.+.|||... -.+|.+|+-..+-.. -...-+...++.+++++|+..+...+
T Consensus 72 ~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~----~~~~~~~~~~~~~l~~ee~~~l~~~L 142 (154)
T 2eth_A 72 KSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEIL----SNFESLLKSVLEKFSEEDFKVVSEGF 142 (154)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHHH----HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHHHHH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45667789999999999641 267999987765432 11122334456778888887765443
No 36
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=38.16 E-value=68 Score=23.85 Aligned_cols=60 Identities=13% Similarity=0.144 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHhHcCcccCC----------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 125 LYADYDSKVKVLQELNYINSQ----------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 125 l~~ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
=.....+.++-|.+.|||... -.+|.+|+-...-.. +.+ .+. .... +++++++..+...+
T Consensus 67 ~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~~~~--~~~-~~~-~~~~--~l~~~e~~~l~~~l 136 (147)
T 1z91_A 67 DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEKAV--DIP-GTI-LGLS--KQSGEDLKQLKSAL 136 (147)
T ss_dssp CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGGTT--THH-HHH-HHHT--CCCTHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHHHH--HHH-HHH-HHHc--CCCHHHHHHHHHHH
Confidence 345667788999999999752 257999998765443 221 222 2222 78888877765443
No 37
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=38.14 E-value=17 Score=28.14 Aligned_cols=59 Identities=12% Similarity=0.030 Sum_probs=41.3
Q ss_pred HHHHHHHHHhHcCcccC-----C-----CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 128 DYDSKVKVLQELNYINS-----Q-----GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 128 ef~~~~~VLr~LgYId~-----~-----~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
..-++++-|.+.|||.. | -.+|.+|+-+.+-... ...-+...+|.+++++|+..+...+
T Consensus 76 tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~----~~~~~~~~~~~~l~~~e~~~l~~~L 144 (162)
T 3k0l_A 76 SANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQCNQ----VVQQLEAQMLQGVDINLAFLIRNNL 144 (162)
T ss_dssp GHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHHHHH----HHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHHHHHH----HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 45678888999999964 1 2689999987764331 1233445567899999988876554
No 38
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=37.78 E-value=16 Score=27.57 Aligned_cols=62 Identities=11% Similarity=-0.003 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHhHcCcccCC----------CccchhhHHHhhhcCCchHHHHHHHhhCCCC-CCCHHHHHHHHhhc
Q psy13857 125 LYADYDSKVKVLQELNYINSQ----------GIVQLKGNIACEMGSKNELLITELLFQNKLV-NFTPEEIAALLSCL 190 (259)
Q Consensus 125 l~~ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~-~L~P~elAAlLS~f 190 (259)
-.....+.++-|.+.|||... -.+|.+|+-+.+-... ..+-+....|. +++++|+..+...+
T Consensus 63 ~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~l 135 (147)
T 2hr3_A 63 RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGNRA----KREEWLVRAMHACLDESERALLAAAG 135 (147)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHHHHH----HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHHHHHH----HHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 345667789999999999642 2689999876653321 11222334455 78888887766543
No 39
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=37.04 E-value=35 Score=25.19 Aligned_cols=61 Identities=15% Similarity=0.123 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhHcCcccCC----------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 126 YADYDSKVKVLQELNYINSQ----------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 126 ~~ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
.....+.++-|.+.|||... -.+|.+|+-..+-.. + ...-+....+.+++++++..+...+
T Consensus 57 ~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l 127 (138)
T 3bpv_A 57 KGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPLIL--K--VEERWEDLLFRDFTEDERKLFRKMC 127 (138)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHHHH--H--HHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44567788999999999751 268999987665322 1 1122344567788888887765543
No 40
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=36.67 E-value=38 Score=25.37 Aligned_cols=62 Identities=11% Similarity=0.047 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHhHcCcccC-----C-----CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 125 LYADYDSKVKVLQELNYINS-----Q-----GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 125 l~~ef~~~~~VLr~LgYId~-----~-----~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
-.....++++-|.+.|||.. | -.+|.+|+-+.+-... ...-+.+..|.+++++++..+...+
T Consensus 58 ~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~----~~~~~~~~~~~~l~~~e~~~l~~~l 129 (145)
T 3g3z_A 58 PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPLTE----SAQEFSDKVFATFGDKRTTRLFADL 129 (145)
T ss_dssp CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHHHHH----HHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHHHHHH----HHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 34566788999999999974 1 2589999987543221 1112333345567888877766544
No 41
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=36.32 E-value=34 Score=25.60 Aligned_cols=64 Identities=17% Similarity=0.143 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhHcCcccCC----------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 126 YADYDSKVKVLQELNYINSQ----------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 126 ~~ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
.....++++-|++.|||... -.+|.+|+....-..... -...-.....+.+++++|+..+...+
T Consensus 65 ~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~~~~~~~-~~~~~~~~~~~~~l~~~e~~~l~~~l 138 (146)
T 3tgn_A 65 QAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEEHHHHH-EHTLLTYEQVATQFTPNEQKVIQRFL 138 (146)
T ss_dssp HHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHHHHHHHH-HHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45566789999999999641 368999987765543100 12233345566788999888765543
No 42
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=35.46 E-value=16 Score=27.06 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=38.4
Q ss_pred HHHHHHHHHhHcCcccC-----C-----CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 128 DYDSKVKVLQELNYINS-----Q-----GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 128 ef~~~~~VLr~LgYId~-----~-----~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
...+.++-|.+.|||.. + -.+|.+|+-+.+-... ...-.....+.+++++++..+...+
T Consensus 63 tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~~~~~----~~~~~~~~~~~~l~~~e~~~l~~~l 131 (139)
T 3bja_A 63 NMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQVDV----QYSDFLKENCGCFTKEEEGILEDLL 131 (139)
T ss_dssp THHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHHH----HHHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHHHHHH----HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45567888999999964 1 2589999977653221 1122334456788998888765543
No 43
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=35.43 E-value=26 Score=26.37 Aligned_cols=62 Identities=19% Similarity=0.174 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHhHcCcccC-----C-----CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 125 LYADYDSKVKVLQELNYINS-----Q-----GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 125 l~~ef~~~~~VLr~LgYId~-----~-----~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
-.....+.++-|.+.|||.. | -.+|.+|+-..+-... ...-.....|.+++++|+..+...+
T Consensus 69 ~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~----~~~~~~~~~~~~l~~~e~~~l~~~l 140 (150)
T 2rdp_A 69 ACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEEVIE----KRQRDLANVLESFSDEEIVVFERCL 140 (150)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHHHHH----HHHHHHHHHGGGSCHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHHHHHH----HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34566778999999999964 1 2689999976543221 1112234456778888887765543
No 44
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=35.40 E-value=38 Score=25.52 Aligned_cols=61 Identities=10% Similarity=-0.020 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhHcCcccCC----------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 126 YADYDSKVKVLQELNYINSQ----------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 126 ~~ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
.....+.++-|.+.|||... -.+|.+|+-..+-.. + ...-+....+.+++++++..+...+
T Consensus 68 ~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l 138 (152)
T 3bj6_A 68 RQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITAIR--A--DEMAKLALFSEGFSSVELTAYHKVQ 138 (152)
T ss_dssp HHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHHHH--H--HHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45667889999999999641 257999987655322 1 1122334456678888887765543
No 45
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=34.61 E-value=24 Score=27.61 Aligned_cols=62 Identities=15% Similarity=0.116 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHhHcCcccC-----C-----CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 125 LYADYDSKVKVLQELNYINS-----Q-----GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 125 l~~ef~~~~~VLr~LgYId~-----~-----~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
-.....++++-|.+.|||.. | -.+|.+|+.+.+-.. + .. .-.....+.+++++|+..+...+
T Consensus 72 s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~~--~-~~-~~~~~~~~~~l~~ee~~~l~~~L 143 (168)
T 2nyx_A 72 QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQVT--E-HR-RTEIARIVEQMAPAERHGLVRAL 143 (168)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHH--H-HH-HHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHH--H-HH-HHHHHHHHHhCCHHHHHHHHHHH
Confidence 34566778999999999964 1 268999987764322 1 11 12223455678888877665544
No 46
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=33.30 E-value=50 Score=24.72 Aligned_cols=59 Identities=14% Similarity=0.115 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhHcCcccCC---CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHH
Q psy13857 126 YADYDSKVKVLQELNYINSQ---GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALL 187 (259)
Q Consensus 126 ~~ef~~~~~VLr~LgYId~~---~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlL 187 (259)
.....+.++-|++.|||... -.+|.+|+....-.....-.+...+.. .+++++++....
T Consensus 45 ~~tv~~~l~~Le~~Gli~r~~~~~~Lt~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~e~~~~~ 106 (139)
T 2x4h_A 45 PSSVFEEVSHLEEKGLVKKKEDGVWITNNGTRSINYLIKAHRVIEILLVN---IGIDKQTACEYS 106 (139)
T ss_dssp HHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHHHHHHHHHHHHHHHHHH---HTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCEEecCCeEEEChhHHHHHHHHHHHHHHHHHHHHH---cCCCHHHHHHHH
Confidence 34567788889999999753 368999987653222111123333333 357777765443
No 47
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=32.90 E-value=63 Score=21.21 Aligned_cols=44 Identities=14% Similarity=0.171 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhHcCcccCCCccchhhHHHhhhcCCchHHHHHHHhhCC
Q psy13857 126 YADYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNK 174 (259)
Q Consensus 126 ~~ef~~~~~VLr~LgYId~~~~vT~KGRvA~eI~s~dELLlTElLf~g~ 174 (259)
-.+|...+.-|..+||.|.+ ..+.|-..+..|-=-.+|.||++.
T Consensus 8 e~~~~~~l~~L~~MGF~~~~-----~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 8 EVRFQQQLEQLNSMGFINRE-----ANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHHHHTTTCCCHH-----HHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHcCCCCHH-----HHHHHHHHhCCCHHHHHHHHHHcC
Confidence 35788999999999998853 445666666666667788888764
No 48
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=30.26 E-value=64 Score=31.41 Aligned_cols=62 Identities=10% Similarity=0.046 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHhHcCcccCC--CccchhhHHHhhhcCCchHHHHHHHhhCCCCC-CCHHHHHHHHh
Q psy13857 125 LYADYDSKVKVLQELNYINSQ--GIVQLKGNIACEMGSKNELLITELLFQNKLVN-FTPEEIAALLS 188 (259)
Q Consensus 125 l~~ef~~~~~VLr~LgYId~~--~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~-L~P~elAAlLS 188 (259)
..+.+.+.++.|.++|+|+.+ ..+|..||+++..+-+- -.+.++..+.=.. .+..++-.++|
T Consensus 451 ~~~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~i~ 515 (702)
T 2p6r_A 451 LSYELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLYIDP--LTGFIFHDVLSRMELSDIGALHLIC 515 (702)
T ss_dssp CHHHHHHHHHHHHHTTSEEESSSEEECHHHHHHHHTTCCH--HHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCeeECCeeccChHHHHHHHHhCCH--HHHHHHHHHhhcccCCHHHHHHHhh
Confidence 345788899999999999976 78999999999999843 3345555543222 45555555544
No 49
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=28.83 E-value=1.8e+02 Score=23.40 Aligned_cols=81 Identities=14% Similarity=0.056 Sum_probs=44.4
Q ss_pred CCChHHHHHHHHHhhCCCCcccCCCCCChHHHHHHHHHHhcCCCC-CCCChhh----HHHHHHHHHHHHHHHHHHhhhhh
Q psy13857 49 DPPKPALYYQMLTLLTSDPVMLGSLSMNHTIVNIQVQNIWGVVNT-PILKFYH----IYKRKEDHNRLSELKHLLSHKGM 123 (259)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~L~~hpc~-~c~~~~~----~~~~~~L~~ei~~L~~~i~~~sl 123 (259)
+||.....-..|..++..+ ..=+..++++++.|-. .++.+-+ ..+-.++.+++++....+.+.+.
T Consensus 20 ~p~~~~elik~L~~le~sa----------ssDa~vrq~Ia~LP~eVsd~s~l~klkDk~~~e~l~~~veeA~~~L~eYn~ 89 (152)
T 4fla_A 20 GPLLTEELIKALQDLENAA----------SGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEYNG 89 (152)
T ss_dssp ---CHHHHHHHHHHHHHHH----------HHHHHHHHHHHTSCGGGTCGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhccc----------cchHHHHHHHHcCCccccCHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555665221 1123356888888853 3333322 22335566677777777777766
Q ss_pred hhHHHHHHHHHHHhHc
Q psy13857 124 SLYADYDSKVKVLQEL 139 (259)
Q Consensus 124 ~l~~ef~~~~~VLr~L 139 (259)
.+..|.+.+..+.+.|
T Consensus 90 rL~~E~~dR~~L~~~L 105 (152)
T 4fla_A 90 RLAAELEDRRQLARML 105 (152)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777666666665544
No 50
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=28.66 E-value=20 Score=28.40 Aligned_cols=58 Identities=14% Similarity=0.037 Sum_probs=36.6
Q ss_pred HHHHHHHHHhHcCcccCC----------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhh
Q psy13857 128 DYDSKVKVLQELNYINSQ----------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSC 189 (259)
Q Consensus 128 ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~ 189 (259)
...++++-|++.|||... -.+|.+|+-+.+-... ...-....+|.+++++|+..+...
T Consensus 102 tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~~~----~~~~~~~~~~~~l~~~e~~~l~~~ 169 (181)
T 2fbk_A 102 STSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVTHLLP----AHLATTQRVLAPLSAQEQRTLEEL 169 (181)
T ss_dssp GGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHHHHHH----HHHHHHHHHHTTSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHHHHHH----HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 445678889999999752 2689999987654321 111223335567777777665543
No 51
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=27.63 E-value=57 Score=24.21 Aligned_cols=57 Identities=12% Similarity=0.103 Sum_probs=37.0
Q ss_pred HHHHHHHHHhHcCcccCC----------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 128 DYDSKVKVLQELNYINSQ----------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 128 ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
...+.++-|.+.|||... -.+|.+|+-+.+-... . ..++ ... + +++++++..+...+
T Consensus 67 tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~--~-~~~~-~~~-~-~l~~~e~~~l~~~l 133 (142)
T 2bv6_A 67 TVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPELSN--A-SDKV-ASA-S-SLSQDEVKELNRLL 133 (142)
T ss_dssp THHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHHHTT--H-HHHH-HHH-T-TCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHHHHHH--H-HHHH-HHH-h-CCCHHHHHHHHHHH
Confidence 456688889999999641 2679999876554331 1 1222 222 3 89999998876654
No 52
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=27.61 E-value=46 Score=24.55 Aligned_cols=61 Identities=20% Similarity=0.097 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhHcCcccCC----------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 126 YADYDSKVKVLQELNYINSQ----------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 126 ~~ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
.....+.++-|.+.|||... -.+|.+|+-..+-... . ..-+....+.+++++|+..+...+
T Consensus 64 ~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~--~--~~~~~~~~~~~l~~~e~~~l~~~l 134 (142)
T 2fbi_A 64 RPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSMSG--D--MEKNYQRIQERFGEEKLAQLLELL 134 (142)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHH--H--HHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHHHHHH--H--HHHHHHHHHhhCCHHHHHHHHHHH
Confidence 45667889999999999642 2589999887653321 1 122333345678888887766543
No 53
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.29 E-value=29 Score=23.51 Aligned_cols=42 Identities=17% Similarity=0.132 Sum_probs=25.9
Q ss_pred HHHHHHHHHhHcCcccCCCccchhhHHHhhhcCCchHHHHHHHhhC
Q psy13857 128 DYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQN 173 (259)
Q Consensus 128 ef~~~~~VLr~LgYId~~~~vT~KGRvA~eI~s~dELLlTElLf~g 173 (259)
.|...+.-|++.||.|.+..++ ++..-+..=+-.|++|+..+
T Consensus 8 ~~a~~L~~L~eMGF~D~~~N~~----aL~~~~gnv~~aI~~Ll~~~ 49 (54)
T 2cp8_A 8 QTAALMAHLFEMGFCDRQLNLR----LLKKHNYNILQVVTELLQLS 49 (54)
T ss_dssp THHHHHHHHHHHTCCCHHHHHH----HHTTTTTCHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHcCCCcHHHHHH----HHHHcCCCHHHHHHHHHhcc
Confidence 4677899999999999753332 33444443345556665543
No 54
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=25.82 E-value=88 Score=19.97 Aligned_cols=42 Identities=10% Similarity=0.236 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhHcCcccCCCccchhhHHHhhhcCCchHHHHHHHhhC
Q psy13857 127 ADYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQN 173 (259)
Q Consensus 127 ~ef~~~~~VLr~LgYId~~~~vT~KGRvA~eI~s~dELLlTElLf~g 173 (259)
..|...+.-|+.+||-|.+ .-+.|=.-+.+|-=-.+|.||+|
T Consensus 5 ~~~~~~i~~L~~MGF~d~~-----~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 5 ERYEHQLRQLNDMGFFDFD-----RNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HHTHHHHHHHHHTTCCCHH-----HHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCCcHH-----HHHHHHHHhCCCHHHHHHHHHcc
Confidence 4678889999999997742 33344455555665667777765
No 55
>3ov9_A Nucleoprotein; orthogonal bundle, viral genomic encapsidation, viral protein; 1.60A {Rift valley fever virus} PDB: 3ouo_A 3lyf_A 4h5m_A 4h5o_A 4h5p_A 4h5q_A 4h6f_A 4h6g_A
Probab=25.46 E-value=47 Score=29.20 Aligned_cols=30 Identities=13% Similarity=0.178 Sum_probs=25.7
Q ss_pred HHHHHHHhHcCcccCCCccchhhHHHhhhc
Q psy13857 130 DSKVKVLQELNYINSQGIVQLKGNIACEMG 159 (259)
Q Consensus 130 ~~~~~VLr~LgYId~~~~vT~KGRvA~eI~ 159 (259)
++++.+|..+|-||.|+.++..=..|++++
T Consensus 212 eqR~~~L~~~gil~~n~~~~~~v~~aA~~~ 241 (245)
T 3ov9_A 212 EKRREFLKAFGLVDSNGKPSAAVMAAAQAY 241 (245)
T ss_dssp HHHHHHHHHTTSBCTTSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHhCccCCCCCCcHHHHHHHHHH
Confidence 578999999999999999988777777764
No 56
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=25.41 E-value=7.8 Score=30.42 Aligned_cols=60 Identities=10% Similarity=0.089 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhHcCcccCC----------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 127 ADYDSKVKVLQELNYINSQ----------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 127 ~ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
...-++++-|.+.|||... -.+|.+|+-+.+-... ...-+...+|.+++++|+..+...+
T Consensus 77 ~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~----~~~~~~~~~~~~l~~~e~~~l~~~L 146 (168)
T 3u2r_A 77 PDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLKDLEE----PVRQCHERQLGHLAADELHELIRLM 146 (168)
T ss_dssp THHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHHHHHH----HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3566788999999999742 2689999987764431 2222344456678888888776655
No 57
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=25.31 E-value=22 Score=27.15 Aligned_cols=33 Identities=9% Similarity=0.033 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhHcCcccCC----------CccchhhHHHhhh
Q psy13857 126 YADYDSKVKVLQELNYINSQ----------GIVQLKGNIACEM 158 (259)
Q Consensus 126 ~~ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~eI 158 (259)
.....+.++-|.+.|||... -.+|.+|+-..+-
T Consensus 71 ~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 113 (155)
T 3cdh_A 71 QSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAES 113 (155)
T ss_dssp HHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHHH
Confidence 45667788999999999642 2689999876543
No 58
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=25.22 E-value=67 Score=23.45 Aligned_cols=61 Identities=15% Similarity=0.251 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhHcCcccCC--------CccchhhHHHhhhcCCchHHHHHHHhh--------CCC--CCCCHHHHHHHH
Q psy13857 126 YADYDSKVKVLQELNYINSQ--------GIVQLKGNIACEMGSKNELLITELLFQ--------NKL--VNFTPEEIAALL 187 (259)
Q Consensus 126 ~~ef~~~~~VLr~LgYId~~--------~~vT~KGRvA~eI~s~dELLlTElLf~--------g~f--~~L~P~elAAlL 187 (259)
.....+.++-|.+.|||... -.+|.+|+-..+-.. ++ +. -+++ .++ .+|+++|+..+.
T Consensus 42 ~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~~g~~~~~~~~--~~-~~-~~~~~~~~~~~~~~~~~~~ls~ee~~~l~ 117 (123)
T 1okr_A 42 PKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKTSK--NF-IN-KVYKGGFNSLVLNFVEKEDLSQDEIEELR 117 (123)
T ss_dssp HHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHHHHHHHH--HH-HH-HHSTTCHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HhhHHHHHHHHHHCCCeEEEecCCeEEEEEecCHHHHHHHHHH--HH-HH-HHHCCCHHHHHHHHHhCCCCCHHHHHHHH
Confidence 34567888999999999752 146778876543211 01 11 1111 233 789999998887
Q ss_pred hhc
Q psy13857 188 SCL 190 (259)
Q Consensus 188 S~f 190 (259)
..+
T Consensus 118 ~~L 120 (123)
T 1okr_A 118 NIL 120 (123)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 59
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=24.23 E-value=1.6e+02 Score=19.62 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHhhhhhh---hHHHHHHHHHHHhHcC
Q psy13857 105 KEDHNRLSELKHLLSHKGMS---LYADYDSKVKVLQELN 140 (259)
Q Consensus 105 ~~L~~ei~~L~~~i~~~sl~---l~~ef~~~~~VLr~Lg 140 (259)
..|+.+-..|++++++.+.. +-.|-..|..||++++
T Consensus 13 e~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 13 EALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 44566666677777765433 4457788889998875
No 60
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=23.19 E-value=28 Score=25.96 Aligned_cols=59 Identities=19% Similarity=0.181 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhHcCcccCC----------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHh
Q psy13857 126 YADYDSKVKVLQELNYINSQ----------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLS 188 (259)
Q Consensus 126 ~~ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS 188 (259)
.....+.++-|.+.|||... -.+|.+|+-...-.. +. . .-.....+.+++++++..+..
T Consensus 61 ~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~--~~-~-~~~~~~~~~~l~~~e~~~l~~ 129 (145)
T 2a61_A 61 KSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVI--ER-R-ENFIEKITSDLGKEKSSKILD 129 (145)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHH--HH-H-HHHHHHHHHHHCHHHHHHHHH
T ss_pred chhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHHHHH--HH-H-HHHHHHHHHhCCHHHHHHHHH
Confidence 44667788999999999752 268999987664322 11 1 112222445567776665544
No 61
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=22.24 E-value=67 Score=24.44 Aligned_cols=65 Identities=14% Similarity=0.049 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhHcCcccCCC---------ccchhhHHHhhhcCC-ch-HH--HHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 126 YADYDSKVKVLQELNYINSQG---------IVQLKGNIACEMGSK-NE-LL--ITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 126 ~~ef~~~~~VLr~LgYId~~~---------~vT~KGRvA~eI~s~-dE-LL--lTElLf~g~f~~L~P~elAAlLS~f 190 (259)
...--++++-|.+.|||.... .+|.+|.....+..- ++ ++ ...-+.+.++.+|+++|+..+...+
T Consensus 42 ~~Tvt~~l~rLe~kGlv~r~~~~r~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~eE~~~L~~lL 119 (138)
T 2g9w_A 42 YTTVMAVLQRLAKKNLVLQIRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRAL 119 (138)
T ss_dssp HHHHHHHHHHHHHTTSEEEEC---CCEEEESSCHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEecCCeEEEEeCCCHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 456678889999999997521 245555433322220 00 00 0111223334577888877765554
No 62
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=21.39 E-value=70 Score=20.92 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhHcCcccCCCccchhhHHHhhhcCCchHHHHHHHhhC
Q psy13857 127 ADYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQN 173 (259)
Q Consensus 127 ~ef~~~~~VLr~LgYId~~~~vT~KGRvA~eI~s~dELLlTElLf~g 173 (259)
.+|...+.-|..+||.|++ .-+.|-..+..|-=-.+|.||+|
T Consensus 10 ~~~~~~l~~L~~MGF~~~~-----~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 10 VRFQQQLEQLSAMGFLNRE-----ANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp TTTHHHHHHHHHTTCCCHH-----HHHHHHHHHTTCHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHcCCCCHH-----HHHHHHHHhCCCHHHHHHHHHhC
Confidence 4677889999999998853 34455555555655677777765
Done!