Query psy13857
Match_columns 259
No_of_seqs 120 out of 637
Neff 5.9
Searched_HMMs 13730
Date Fri Aug 16 22:11:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13857.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13857hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lnwa_ a.4.5.28 (A:) MexR rep 66.1 2.1 0.00015 31.6 3.3 62 125-190 63-134 (141)
2 d1s3ja_ a.4.5.28 (A:) Putative 64.0 4.5 0.00033 29.5 4.9 63 124-190 61-133 (143)
3 d1jgsa_ a.4.5.28 (A:) Multiple 46.9 7.3 0.00053 28.2 3.5 63 123-189 59-132 (138)
4 d3deua1 a.4.5.28 (A:2-141) Tra 44.7 12 0.0009 26.7 4.5 60 127-190 61-130 (140)
5 d2fbia1 a.4.5.28 (A:5-140) Pro 44.0 3.6 0.00026 29.8 1.2 68 119-190 51-128 (136)
6 d2fbha1 a.4.5.28 (A:8-144) Tra 40.9 17 0.0012 25.8 4.7 62 125-190 56-127 (137)
7 d2a61a1 a.4.5.28 (A:5-143) Tra 40.2 4.5 0.00033 29.4 1.2 66 121-190 53-128 (139)
8 d1z91a1 a.4.5.28 (A:8-144) Org 38.8 27 0.002 24.7 5.6 66 118-189 53-128 (137)
9 d3broa1 a.4.5.28 (A:3-137) Tra 38.3 13 0.00097 26.3 3.7 63 124-190 57-129 (135)
10 d1lj9a_ a.4.5.28 (A:) Transcri 36.9 17 0.0013 26.2 4.2 63 124-190 55-127 (144)
11 d1w7ca2 d.17.2.1 (A:43-169) Ly 35.1 9.3 0.00068 28.5 2.3 20 172-191 16-35 (127)
12 d1g7da_ a.71.1.1 (A:) Endoplas 34.0 22 0.0016 25.3 4.2 36 105-140 61-97 (106)
13 d2c0ga1 a.71.1.1 (A:1146-1251) 33.8 21 0.0015 25.5 4.1 36 105-140 62-98 (106)
14 d2etha1 a.4.5.28 (A:1-140) Put 32.4 44 0.0032 23.5 5.9 69 118-190 52-130 (140)
15 d1r7ja_ a.4.5.49 (A:) Sso10a ( 31.8 11 0.00081 26.2 2.1 35 123-157 29-66 (90)
16 d2p8ta1 a.4.5.72 (A:14-82) Hyp 31.1 18 0.0013 24.1 3.0 29 127-155 32-63 (69)
17 d2p6ra1 a.4.5.43 (A:404-488) H 30.2 18 0.0013 24.2 3.1 35 125-159 48-84 (85)
18 d1ttea1 a.5.2.1 (A:161-215) Ub 28.0 13 0.00092 23.8 1.7 14 130-143 24-37 (55)
19 d1stza1 a.4.5.51 (A:14-100) He 22.8 19 0.0014 24.7 2.0 27 127-153 40-71 (87)
20 d2elca1 a.46.2.1 (A:1-52) Anth 21.0 14 0.001 22.7 0.9 16 177-192 29-44 (52)
21 d2hr3a1 a.4.5.28 (A:2-146) Pro 20.5 27 0.002 24.9 2.6 65 117-185 54-129 (145)
No 1
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=66.10 E-value=2.1 Score=31.57 Aligned_cols=62 Identities=19% Similarity=0.176 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHhHcCcccC-----C-----CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 125 LYADYDSKVKVLQELNYINS-----Q-----GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 125 l~~ef~~~~~VLr~LgYId~-----~-----~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
-...-.+.++.|++.|||.. | -.+|.+|+-+.+-.. -..+-..+.+|.+++++|...++.++
T Consensus 63 ~~~~vsr~l~~L~~~G~v~r~~~~~D~R~~~l~lT~~G~~~~~~~~----~~~~~~~~~~~~~ls~~e~~~l~~~L 134 (141)
T d1lnwa_ 63 DKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHQHAE----AIMSRVHDELFAPLTPVEQATLVHLL 134 (141)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEECSSSSSSEEEEECHHHHHHHHHHH----HHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHhhceeeeccCCCCcchhhccCHHHHHHHHHHH----HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 34566788999999999963 2 278999997655433 24455666788899999998877654
No 2
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}
Probab=64.05 E-value=4.5 Score=29.47 Aligned_cols=63 Identities=16% Similarity=0.036 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHHhHcCcccC-----C-----CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 124 SLYADYDSKVKVLQELNYINS-----Q-----GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 124 ~l~~ef~~~~~VLr~LgYId~-----~-----~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
.-.....+.++-|.+.|||.. | -.+|.+|+-.++-.- =..+-....+|.+|+++|+..+...+
T Consensus 61 i~~~~vs~~l~~L~~~glv~r~~~~~D~R~~~v~lT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~l 133 (143)
T d1s3ja_ 61 VKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEVL----AGRKAIMARYLSFLTEEEMLQAAHIT 133 (143)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHHHH----HHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhhhheeeeecCCCCceEEEECHHHHHHHHHHH----HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 344567788999999999952 2 278999998877543 22333555578899999998876654
No 3
>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}
Probab=46.88 E-value=7.3 Score=28.21 Aligned_cols=63 Identities=17% Similarity=0.181 Sum_probs=42.0
Q ss_pred hhhHHHHHHHHHHHhHcCcccC-----C-----CccchhhHHHh-hhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhh
Q psy13857 123 MSLYADYDSKVKVLQELNYINS-----Q-----GIVQLKGNIAC-EMGSKNELLITELLFQNKLVNFTPEEIAALLSC 189 (259)
Q Consensus 123 l~l~~ef~~~~~VLr~LgYId~-----~-----~~vT~KGRvA~-eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~ 189 (259)
..-...-.+.++-|.+.|||.. | -.+|.+|+-.. ++.. .+.+-+.+-+|++++++|+..+...
T Consensus 59 ~i~~~~vs~~v~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~ 132 (138)
T d1jgsa_ 59 SVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCHQ----LVGQDLHQELTKNLTADEVATLEYL 132 (138)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHHHHH----HHHHHHHHHHHTTTTTTCHHHHHHH
T ss_pred CCCHhHHHHHHHHHhhCCCEEEeeccCCCCeeEEEECHHHHHHHHHHHH----HHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3344566788899999999963 2 27899999875 3332 1223334445778888888877654
No 4
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}
Probab=44.74 E-value=12 Score=26.70 Aligned_cols=60 Identities=13% Similarity=0.080 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhHcCcccC----C------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 127 ADYDSKVKVLQELNYINS----Q------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 127 ~ef~~~~~VLr~LgYId~----~------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
....+.++-|.+-|||.. + -.+|.+|+-+++-.. - ..+-+.+..|.+++|+|+..+...+
T Consensus 61 ~~vs~~l~~L~~~glI~~~~~~~D~R~~~l~lT~~G~~~~~~~~---~-~~~~~~~~~~~~l~~ee~~~~~~~L 130 (140)
T d3deua1 61 PSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEME---E-VIHKTRGEILAGISSEEIELLIKLI 130 (140)
T ss_dssp HHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHHH---H-HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCEEecccCCCCCceeeEECHHHHHHHHHHH---H-HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 456678899999999953 2 268999997776433 1 2244556678899999998877654
No 5
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=43.99 E-value=3.6 Score=29.82 Aligned_cols=68 Identities=19% Similarity=0.117 Sum_probs=47.0
Q ss_pred hhhhhhhHHHHHHHHHHHhHcCcccC-----C-----CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHh
Q psy13857 119 SHKGMSLYADYDSKVKVLQELNYINS-----Q-----GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLS 188 (259)
Q Consensus 119 ~~~sl~l~~ef~~~~~VLr~LgYId~-----~-----~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS 188 (259)
......-.....+.++-|.+-|||.. | -.+|.+|+-+.+-.. -..+-..+.+|.+++++|+..++.
T Consensus 51 a~~~~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~~~~----~~~~~~~~~~~~~l~~ee~~~l~~ 126 (136)
T d2fbia1 51 ANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSMS----GDMEKNYQRIQERFGEEKLAQLLE 126 (136)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHH----HHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCEEEeecCccCchhhhccCHHHHHHHHHHH----HHHHHHHHHHHhCCCHHHHHHHHH
Confidence 33333445677889999999999964 1 378999998776443 233445555777889999888765
Q ss_pred hc
Q psy13857 189 CL 190 (259)
Q Consensus 189 ~f 190 (259)
.+
T Consensus 127 ~L 128 (136)
T d2fbia1 127 LL 128 (136)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 6
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=40.91 E-value=17 Score=25.85 Aligned_cols=62 Identities=11% Similarity=0.041 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHhHcCcccC----C------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 125 LYADYDSKVKVLQELNYINS----Q------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 125 l~~ef~~~~~VLr~LgYId~----~------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
-.....+.++-|.+.|||.. + -.+|.+|+-..+=-. =..+-+.+..|.+++++|+..+...+
T Consensus 56 ~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~i~lT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~l 127 (137)
T d2fbha1 56 EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADIE----AIAASVRNDVLTGIDESEQALCQQVL 127 (137)
T ss_dssp CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHHHH----HHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCccccCCCCCCCchhhhcCHHHHHHHHHHH----HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 34456788999999999964 1 268999987654322 12334555678999999998876543
No 7
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=40.22 E-value=4.5 Score=29.38 Aligned_cols=66 Identities=17% Similarity=0.096 Sum_probs=44.6
Q ss_pred hhhhhHHHHHHHHHHHhHcCcccCC----------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 121 KGMSLYADYDSKVKVLQELNYINSQ----------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 121 ~sl~l~~ef~~~~~VLr~LgYId~~----------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
....-....-++++-|.+.|||... -.+|.+|+-+..--. -..+-+...+|.+++++|+..+...+
T Consensus 53 ~l~i~~~tvs~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~l 128 (139)
T d2a61a1 53 LLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVI----ERRENFIEKITSDLGKEKSSKILDYL 128 (139)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHH----HHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HhCCCcccchHHHHHHHhcCeeeeeeccCCCCeEEEEECHHHHHHHHHHH----HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3334455678899999999999641 278999997765332 12233455577788888887776543
No 8
>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]}
Probab=38.82 E-value=27 Score=24.74 Aligned_cols=66 Identities=12% Similarity=0.128 Sum_probs=41.4
Q ss_pred HhhhhhhhHHHHHHHHHHHhHcCcccC-----C-----CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHH
Q psy13857 118 LSHKGMSLYADYDSKVKVLQELNYINS-----Q-----GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALL 187 (259)
Q Consensus 118 i~~~sl~l~~ef~~~~~VLr~LgYId~-----~-----~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlL 187 (259)
+......-...-.+.++-|.+.|||.. | -.+|.+|+-+++-.. + +..+ +.. +.+++++|+..+.
T Consensus 53 La~~~~i~~~~vsr~i~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~~~~~--~-~~~~-~~~--~~~~~~ee~~~l~ 126 (137)
T d1z91a1 53 MGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEKAV--D-IPGT-ILG--LSKQSGEDLKQLK 126 (137)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGGTT--T-HHHH-HHH--HTCCCTHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHhhccceEEeecCCCCCeEEEEECHHHHHHHHHHH--H-HHHH-HHH--HhCCCHHHHHHHH
Confidence 333333445667789999999999963 2 278999997766433 2 2222 222 4567777777665
Q ss_pred hh
Q psy13857 188 SC 189 (259)
Q Consensus 188 S~ 189 (259)
..
T Consensus 127 ~~ 128 (137)
T d1z91a1 127 SA 128 (137)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 9
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=38.28 E-value=13 Score=26.34 Aligned_cols=63 Identities=10% Similarity=-0.069 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHHhHcCcccC-----C-----CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 124 SLYADYDSKVKVLQELNYINS-----Q-----GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 124 ~l~~ef~~~~~VLr~LgYId~-----~-----~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
.-...-.+.++-|.+.|||.. | -.+|.+|+-..+-.. =..+-.....|.+++++|+..+...+
T Consensus 57 ~~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~~~~~----~~~~~~~~~~~~~l~~ee~~~~~~~L 129 (135)
T d3broa1 57 IKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETIIL----SYMDSDQSQMTSGLNKEEVVFLEKIL 129 (135)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHHHH----HHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred cCHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccHHHHHHHHHHH----HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 334455678899999999953 2 278999997665433 11233444567889999998876543
No 10
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}
Probab=36.92 E-value=17 Score=26.24 Aligned_cols=63 Identities=19% Similarity=0.117 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHHhHcCcccC-----C-----CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhc
Q psy13857 124 SLYADYDSKVKVLQELNYINS-----Q-----GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCL 190 (259)
Q Consensus 124 ~l~~ef~~~~~VLr~LgYId~-----~-----~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~f 190 (259)
.-....-+.++-|.+.|||.. | -.+|.+|+-..+--.. ..+-...-+|.+++++++..+...|
T Consensus 55 i~~~tvs~~l~~L~~~glI~r~~~~~D~R~~~l~LT~~G~~~~~~~~~----~~~~~~~~~~~~l~~ee~~~l~~~L 127 (144)
T d1lj9a_ 55 VDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIVR----ENQHSNQVALQGLSEVEISQLADYL 127 (144)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHHH----HHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred ccHhhHHHHHHHHHhhhcccccCCCCCCCccccccCHHHHHHHHHHHH----HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 344566788899999999963 2 2789999866554331 1223344467889999998886654
No 11
>d1w7ca2 d.17.2.1 (A:43-169) Lysyl oxidase PplO, domains 1 and 2 {Yeast (Pichia pastoris) [TaxId: 4922]}
Probab=35.09 E-value=9.3 Score=28.54 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=18.0
Q ss_pred hCCCCCCCHHHHHHHHhhcc
Q psy13857 172 QNKLVNFTPEEIAALLSCLV 191 (259)
Q Consensus 172 ~g~f~~L~P~elAAlLS~fV 191 (259)
.|+|.+|+++|++||.+-+-
T Consensus 16 ~nv~adLt~~E~~aV~~~L~ 35 (127)
T d1w7ca2 16 TNIWTSLAKEEVQEVLDLLH 35 (127)
T ss_dssp CCTTCCCCHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHHHHHHHH
Confidence 48999999999999999883
No 12
>d1g7da_ a.71.1.1 (A:) Endoplasmic reticulum protein ERP29, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=34.05 E-value=22 Score=25.26 Aligned_cols=36 Identities=8% Similarity=0.208 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHHhHcC
Q psy13857 105 KEDHNRLSELKHLLSH-KGMSLYADYDSKVKVLQELN 140 (259)
Q Consensus 105 ~~L~~ei~~L~~~i~~-~sl~l~~ef~~~~~VLr~Lg 140 (259)
.-+.+++++|++-+.. -+..=.++|..+++||+.|-
T Consensus 61 ~~~~~E~~RL~~il~g~vs~~K~del~~r~NIL~sF~ 97 (106)
T d1g7da_ 61 DFPASELARISKLIENKMSEGKKEELQRSLNILTAFR 97 (106)
T ss_dssp HHHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 3467789999998865 34456799999999999983
No 13
>d2c0ga1 a.71.1.1 (A:1146-1251) Windbeutel, C-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=33.82 E-value=21 Score=25.46 Aligned_cols=36 Identities=11% Similarity=0.032 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHHhHcC
Q psy13857 105 KEDHNRLSELKHLLSH-KGMSLYADYDSKVKVLQELN 140 (259)
Q Consensus 105 ~~L~~ei~~L~~~i~~-~sl~l~~ef~~~~~VLr~Lg 140 (259)
.-+.+|+++|++-+.. -+..=.++|..+++||+.|.
T Consensus 62 ~fv~~E~~RL~~ll~g~~s~~K~del~~r~NIL~~F~ 98 (106)
T d2c0ga1 62 DFLEEETKRLLRLKAGKVTEAKKEELLRKLNILEVFR 98 (106)
T ss_dssp HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 3467789999998864 34556789999999999885
No 14
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}
Probab=32.41 E-value=44 Score=23.49 Aligned_cols=69 Identities=14% Similarity=0.124 Sum_probs=45.5
Q ss_pred HhhhhhhhHHHHHHHHHHHhHcCcccC----C------CccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHH
Q psy13857 118 LSHKGMSLYADYDSKVKVLQELNYINS----Q------GIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALL 187 (259)
Q Consensus 118 i~~~sl~l~~ef~~~~~VLr~LgYId~----~------~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlL 187 (259)
+......-....-++++-|.+.|||.. + -.+|.+|+-..+-.... -+-....+|++++++++..+.
T Consensus 52 La~~l~i~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~~~~~~----~~~~~~~~~~~~~~~e~~~~~ 127 (140)
T d2etha1 52 IAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEILSN----FESLLKSVLEKFSEEDFKVVS 127 (140)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHHHHH----HHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCeeeeecccccchhhhhcCHHHHHHHHHHHHH----HHHHHHHHHhCCCHHHHHHHH
Confidence 333333445677889999999999963 2 27899998766544311 123344466788999988776
Q ss_pred hhc
Q psy13857 188 SCL 190 (259)
Q Consensus 188 S~f 190 (259)
..+
T Consensus 128 ~~l 130 (140)
T d2etha1 128 EGF 130 (140)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 15
>d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=31.78 E-value=11 Score=26.18 Aligned_cols=35 Identities=26% Similarity=0.257 Sum_probs=27.6
Q ss_pred hhhHHHHHHHHHHHhHcCcccCC---CccchhhHHHhh
Q psy13857 123 MSLYADYDSKVKVLQELNYINSQ---GIVQLKGNIACE 157 (259)
Q Consensus 123 l~l~~ef~~~~~VLr~LgYId~~---~~vT~KGRvA~e 157 (259)
+-=++.+...++-|...|+|..+ -.+|.||+-.-+
T Consensus 29 NLs~~~~~kyl~~L~~~GLI~~~~~~Y~iT~kG~~~L~ 66 (90)
T d1r7ja_ 29 NLSYALTGRYIKMLMDLEIIRQEGKQYMLTKKGEELLE 66 (90)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCeeecCCEEEECccHHHHHH
Confidence 34467889999999999999654 388999987644
No 16
>d2p8ta1 a.4.5.72 (A:14-82) Hypothetical protein PH0730 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=31.05 E-value=18 Score=24.06 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhHcCcccCC---CccchhhHHH
Q psy13857 127 ADYDSKVKVLQELNYINSQ---GIVQLKGNIA 155 (259)
Q Consensus 127 ~ef~~~~~VLr~LgYId~~---~~vT~KGRvA 155 (259)
...+..++.|++.|.|+-. ..+|.+|+-.
T Consensus 32 r~vRte~~~Lk~~gLI~~~~~Gm~lTe~G~~~ 63 (69)
T d2p8ta1 32 GSVRTLLRKLSHLDIIRSKQRGHFLTLKGKEI 63 (69)
T ss_dssp HHHHHHHHHHHHTTSEEEC--CEEECHHHHHH
T ss_pred HHHHHHHHHHHHCCCeeeeCCCCEECHhHHHH
Confidence 4567788999999999864 4889999753
No 17
>d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=30.24 E-value=18 Score=24.22 Aligned_cols=35 Identities=11% Similarity=0.177 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHhHcCcccCCC--ccchhhHHHhhhc
Q psy13857 125 LYADYDSKVKVLQELNYINSQG--IVQLKGNIACEMG 159 (259)
Q Consensus 125 l~~ef~~~~~VLr~LgYId~~~--~vT~KGRvA~eI~ 159 (259)
+.+-.++.++.|.+.|+|..++ ..|.-||+++..|
T Consensus 48 l~~~i~~~l~~L~~~~~I~~~~~l~aT~lGri~S~~Y 84 (85)
T d2p6ra1 48 LSYELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLY 84 (85)
T ss_dssp CHHHHHHHHHHHHHTTSEEESSSEEECHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCcccccccccCHHHHHHHHHh
Confidence 3455677889999999998654 6799999998765
No 18
>d1ttea1 a.5.2.1 (A:161-215) Ubiquitin-protein ligase ubc1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.96 E-value=13 Score=23.85 Aligned_cols=14 Identities=36% Similarity=0.446 Sum_probs=12.2
Q ss_pred HHHHHHHhHcCccc
Q psy13857 130 DSKVKVLQELNYIN 143 (259)
Q Consensus 130 ~~~~~VLr~LgYId 143 (259)
++++.|||+|||=.
T Consensus 24 dKvI~VLrrlgik~ 37 (55)
T d1ttea1 24 DKIVEVLRRLGVKS 37 (55)
T ss_dssp HHHHHHHHHSCCSS
T ss_pred hhHHHHHHHhCcCC
Confidence 57899999999984
No 19
>d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=22.81 E-value=19 Score=24.73 Aligned_cols=27 Identities=33% Similarity=0.343 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhHcCcccCC-----CccchhhH
Q psy13857 127 ADYDSKVKVLQELNYINSQ-----GIVQLKGN 153 (259)
Q Consensus 127 ~ef~~~~~VLr~LgYId~~-----~~vT~KGR 153 (259)
-.-.+.+.-|++.|||... .++|.||=
T Consensus 40 aTIRn~m~~LE~~G~l~~~h~s~GriPT~~g~ 71 (87)
T d1stza1 40 ATIRNDMKKLEYLGYIYQPHTSAGRIPTDKGL 71 (87)
T ss_dssp HHHHHHHHHHHHTTSEECCSSCSCBEECHHHH
T ss_pred HHHHHHHHHHHHCCcccCCCCCCCCcccHHHH
Confidence 3567889999999999864 37788883
No 20
>d2elca1 a.46.2.1 (A:1-52) Anthranilate phosphoribosyltransferase (TrpD) {Thermus thermophilus [TaxId: 274]}
Probab=20.96 E-value=14 Score=22.75 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=13.3
Q ss_pred CCCHHHHHHHHhhccc
Q psy13857 177 NFTPEEIAALLSCLVF 192 (259)
Q Consensus 177 ~L~P~elAAlLS~fV~ 192 (259)
+.+|.++||+|.++-.
T Consensus 29 ~~~~~qiaafL~al~~ 44 (52)
T d2elca1 29 EVSPVRAAGLLVALSL 44 (52)
T ss_dssp CSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6889999999888754
No 21
>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=20.51 E-value=27 Score=24.93 Aligned_cols=65 Identities=12% Similarity=0.031 Sum_probs=39.1
Q ss_pred HHhhhhhhhHHHHHHHHHHHhHcCcccC-----C-----CccchhhHHHhhh-cCCchHHHHHHHhhCCCCCCCHHHHHH
Q psy13857 117 LLSHKGMSLYADYDSKVKVLQELNYINS-----Q-----GIVQLKGNIACEM-GSKNELLITELLFQNKLVNFTPEEIAA 185 (259)
Q Consensus 117 ~i~~~sl~l~~ef~~~~~VLr~LgYId~-----~-----~~vT~KGRvA~eI-~s~dELLlTElLf~g~f~~L~P~elAA 185 (259)
++...-..-....-+.++-|.+.|||.. | -.+|.+|+-+..= .....=.+.+.++ ..+++++.+.
T Consensus 54 ~La~~~~~~~~~vs~~i~~L~~~glv~r~~~~~DrR~~~i~LT~~G~~~~~~~~~~~~~~~~~~~~----~~~~~e~~~~ 129 (145)
T d2hr3a1 54 ELAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGNRAKREEWLVRAMH----ACLDESERAL 129 (145)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHHHHHHHHHHHHHHHH----HHCCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCeEeeeCccchhHHHhccCHHHHHHHHHHHHHHHHHHHHHHH----ccCCHHHHHH
Confidence 3444444455678899999999999963 1 2789999986532 2212223344333 3356655544
Done!