RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13857
         (259 letters)



>d4sbva_ b.121.4.7 (A:) Sobemovirus coat protein {SBMV (Southern
           bean mosaic virus), cow pea strain [TaxId: 12139]}
          Length = 199

 Score = 26.5 bits (58), Expect = 2.5
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 4/65 (6%)

Query: 33  TTTPGPSVNASDPNSSDPPKPALYYQMLTL--LTSDPVMLGSLSMNHTIVNIQVQNIWGV 90
           TTT G        + +D   P    Q+  L    + PV  G  S    + N +  +    
Sbjct: 64  TTTSGAIHMGFQYDMADTL-PVSVNQLSNLKGYVTGPVWEGQ-SGLCFVNNTKCPDTSRA 121

Query: 91  VNTPI 95
           +   +
Sbjct: 122 ITIAL 126


>d2fa8a1 c.47.1.23 (A:4-89) Hypothetical protein Atu0228
          {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 86

 Score = 24.2 bits (53), Expect = 6.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 11 GVFKITKESRTIWCRRV 27
          G+F+IT +   IW R+ 
Sbjct: 45 GLFEITVDGTIIWERKR 61


>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein), gamma
           chain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 54

 Score = 23.5 bits (51), Expect = 6.6
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 213 IADMNIEVESIEKKHGVERDKSSEEADNL 241
           IA     VE ++ +  ++R K S+ A +L
Sbjct: 2   IAQARKLVEQLKMEANIDRIKVSKAAADL 30


>d1iata_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 556

 Score = 25.6 bits (55), Expect = 7.0
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 13/112 (11%)

Query: 105 KEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNEL 164
             + +R +     L+     +  DY SK       N +    +  L  ++A   G +   
Sbjct: 30  DANKDRFNHFSLTLNTNHGHILVDY-SK-------NLVTEDVMRMLV-DLAKSRGVEAAR 80

Query: 165 LITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIADM 216
              E +F  + +N+T E  A L   L  +S T    +  + + +   ++  M
Sbjct: 81  ---ERMFNGEKINYT-EGRAVLHVALRNRSNTPILVDGKDVMPEVNKVLDKM 128


>d1tbge_ a.137.3.1 (E:) Transducin (heterotrimeric G protein), gamma
           chain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 68

 Score = 23.5 bits (51), Expect = 8.4
 Identities = 6/34 (17%), Positives = 18/34 (52%)

Query: 208 QGMSIIADMNIEVESIEKKHGVERDKSSEEADNL 241
           + ++    + +EV+ ++K+  +ER   S+  +  
Sbjct: 7   EDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEF 40


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.389 

Gapped
Lambda     K      H
   0.267   0.0579    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 910,230
Number of extensions: 39410
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 8
Length of query: 259
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 176
Effective length of database: 1,268,006
Effective search space: 223169056
Effective search space used: 223169056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.1 bits)