BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13858
(70 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3
Length = 1246
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
Query: 1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLE-KNQLFLIREAEG 59
+LSATVPN LEFADW+G K+ ++YV+ST+ RPVPL+H+L+ G + + +LFL+ ++ G
Sbjct: 452 LLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRG 511
Query: 60 EFLTRG 65
F T+G
Sbjct: 512 AFHTKG 517
>sp|O59801|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1
Length = 1213
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 46/65 (70%), Gaps = 5/65 (7%)
Query: 1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGE 60
+LSATVPNT EFA WVG TKK +YV+STLKRPVPL+H+L+V K +F I + G
Sbjct: 422 LLSATVPNTKEFASWVGRTKKKNIYVISTLKRPVPLEHYLWV-----KQNMFKIVDQHGR 476
Query: 61 FLTRG 65
FL G
Sbjct: 477 FLMDG 481
>sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SKI2 PE=1 SV=2
Length = 1287
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 41/57 (71%), Gaps = 4/57 (7%)
Query: 1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVG----PVLEKNQLFL 53
+LSATVPNT EFA+W+G TK+ +YV+ST KRPVPL+ ++ PV+ +N FL
Sbjct: 473 LLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFL 529
>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3
SV=1
Length = 1026
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 2 LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEF 61
LSAT+PN +FA WV + K+ V VV T RP PL+H++Y PV + ++ + +GEF
Sbjct: 268 LSATIPNARQFAQWVASIKQQPVNVVYTDYRPTPLQHWIY--PVGGEG-MYEVVNVKGEF 324
>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1
Length = 1030
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 2 LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLY 41
LSAT+PN L+FA W+ K +VV T RP PL+HF+Y
Sbjct: 268 LSATLPNALQFARWISEIHKQPCHVVYTDYRPTPLQHFIY 307
>sp|O14232|MTR4_SCHPO ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mtr4 PE=1 SV=1
Length = 1117
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 2 LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLY 41
LSAT+PN ++FA+W+ + +VV T RP PL+H+L+
Sbjct: 341 LSATIPNAMQFAEWITKIHRQPCHVVYTDFRPTPLQHYLF 380
>sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1
Length = 1073
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 2 LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLY 41
LSAT+PN +EFA+W+ ++V T RP PL+H+L+
Sbjct: 292 LSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLF 331
>sp|Q9CZU3|SK2L2_MOUSE Superkiller viralicidic activity 2-like 2 OS=Mus musculus
GN=Skiv2l2 PE=2 SV=1
Length = 1040
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 2 LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEF 61
LSAT+PN +FA+W+ + K +V+ T RP PL+H+++ + L L+ + G+F
Sbjct: 280 LSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPA---GGDGLHLVVDENGDF 336
>sp|P42285|SK2L2_HUMAN Superkiller viralicidic activity 2-like 2 OS=Homo sapiens
GN=SKIV2L2 PE=1 SV=3
Length = 1042
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 2 LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEF 61
LSAT+PN +FA+W+ + K +V+ T RP PL+H+++ + L L+ + G+F
Sbjct: 282 LSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPA---GGDGLHLVVDENGDF 338
>sp|Q9YFQ8|HELS_AERPE Putative ski2-type helicase OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_0191.1
PE=3 SV=2
Length = 735
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 6/40 (15%)
Query: 2 LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLY 41
LSATVPN E A+W+G +V + RPVPL+ +++
Sbjct: 179 LSATVPNAGEIAEWIGGK------IVESSWRPVPLREYVF 212
>sp|Q10701|HELY_MYCTU Probable helicase HelY OS=Mycobacterium tuberculosis GN=helY PE=3
SV=1
Length = 906
Score = 36.6 bits (83), Expect = 0.051, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 2 LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGE 60
LSATV N EF W+ T + VV RPVPL + VG + + I EAEG+
Sbjct: 162 LSATVSNAEEFGGWI-QTVRGDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQ 219
>sp|O60072|MUG81_SCHPO Putative helicase mug81 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mug81 PE=1 SV=1
Length = 1935
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 2 LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPL-KHFL 40
LSAT+PN L+ AD++G + ++ S+ RP P+ +HF+
Sbjct: 457 LSATLPNYLDVADFLGVNRYKGLFYFSSAFRPCPIEQHFI 496
>sp|Q97AI2|HELS_THEVO Putative ski2-type helicase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0828 PE=3 SV=1
Length = 674
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 11/59 (18%)
Query: 2 LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGE 60
LSATV N E A+W+ + ++ + RPVPLK VG +L +N+LFL +A +
Sbjct: 175 LSATVSNASEIAEWLNAS------LIKSSFRPVPLK----VG-ILYRNRLFLDGDARSD 222
>sp|Q9ZBD8|HELY_MYCLE Probable helicase HelY OS=Mycobacterium leprae (strain TN) GN=helY
PE=3 SV=1
Length = 920
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 2 LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVL 46
LSATV N EF WV T + VV RPVPL + VG L
Sbjct: 162 LSATVSNAEEFGGWV-QTVRGDTTVVVDEHRPVPLWQHVLVGKRL 205
>sp|B9DFG3|ISE2_ARATH DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic
OS=Arabidopsis thaliana GN=ISE2 PE=1 SV=2
Length = 1171
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 2 LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFL 40
LSATV N E A W+G K +V++ +RPVPL +
Sbjct: 305 LSATVANPDELAGWIGEIHG-KTELVTSTRRPVPLTWYF 342
>sp|O75417|DPOLQ_HUMAN DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 SV=2
Length = 2590
Score = 32.7 bits (73), Expect = 0.72, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 2 LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEF 61
+SAT+PN A W+ ++Y T RPVPL + VG + + + L+RE E
Sbjct: 264 MSATLPNLELVASWL----NAELY--HTDFRPVPLLESVKVGNSIYDSSMKLVREFEPML 317
Query: 62 LTRGD 66
+GD
Sbjct: 318 QVKGD 322
>sp|Q9HJX7|HELS_THEAC Putative ski2-type helicase OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta0835 PE=3 SV=1
Length = 674
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 11/52 (21%)
Query: 2 LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFL 53
LSATV N +E A W+ + ++ + RPVPLK +L ++QL+L
Sbjct: 175 LSATVSNAMELASWLDAS------LIKSDFRPVPLK-----TGILYRDQLYL 215
>sp|A3MSA1|HELS_PYRCJ Putative ski2-type helicase OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=Pcal_0078 PE=3 SV=1
Length = 708
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 2 LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVL 46
LSATV N E A W+G +V + RPVPL+ +Y G V+
Sbjct: 176 LSATVGNAGEVAAWLG------ARLVESSWRPVPLREGVYHGGVI 214
>sp|A4XJS3|RUVB_CALS8 Holliday junction ATP-dependent DNA helicase RuvB
OS=Caldicellulosiruptor saccharolyticus (strain ATCC
43494 / DSM 8903) GN=ruvB PE=3 SV=1
Length = 338
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 7 PNTLEFADWVGNTK---KTKVYVVSTLKRPVPLKHFLYVGP 44
P TLE D++G K K K+++ + KR PL H L GP
Sbjct: 21 PKTLE--DYIGQQKVKEKIKIFIEAAKKRKEPLDHVLLYGP 59
>sp|P53327|SLH1_YEAST Antiviral helicase SLH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SLH1 PE=1 SV=2
Length = 1967
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 2 LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFL 40
LSAT+PN ++ AD++G ++ ++ RP PL+ L
Sbjct: 463 LSATLPNFMDVADFLGVNRQIGMFYFDQSFRPKPLEQQL 501
>sp|B9MRB3|RUVB_CALBD Holliday junction ATP-dependent DNA helicase RuvB
OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 /
DSM 6725 / Z-1320) GN=ruvB PE=3 SV=1
Length = 338
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 7 PNTLEFADWVGNTK---KTKVYVVSTLKRPVPLKHFLYVGP 44
P TLE +++G K K K+++ + KR PL H L GP
Sbjct: 21 PKTLE--EYIGQQKVKEKIKIFIEAAKKRKEPLDHVLLYGP 59
>sp|C0R250|RUVB_BRAHW Holliday junction ATP-dependent DNA helicase RuvB OS=Brachyspira
hyodysenteriae (strain ATCC 49526 / WA1) GN=ruvB PE=3
SV=1
Length = 346
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 12 FADWVGNTK---KTKVYVVSTLKRPVPLKHFLYVGP 44
F D++G K KV++ S KR V L H L+ GP
Sbjct: 26 FDDFLGQNNIKSKLKVFINSAKKREVSLDHILFYGP 61
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,354,745
Number of Sequences: 539616
Number of extensions: 808314
Number of successful extensions: 1542
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1529
Number of HSP's gapped (non-prelim): 24
length of query: 70
length of database: 191,569,459
effective HSP length: 42
effective length of query: 28
effective length of database: 168,905,587
effective search space: 4729356436
effective search space used: 4729356436
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)