Query psy13858
Match_columns 70
No_of_seqs 105 out of 552
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 22:12:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13858.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13858hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0948|consensus 99.9 6.8E-27 1.5E-31 188.5 3.8 65 1-68 271-335 (1041)
2 KOG0947|consensus 99.8 3.7E-20 8E-25 152.1 4.4 62 1-67 439-500 (1248)
3 COG4581 Superfamily II RNA hel 99.8 3.1E-19 6.7E-24 146.8 5.4 62 1-67 265-326 (1041)
4 KOG0952|consensus 98.7 1.7E-08 3.7E-13 84.6 3.8 45 1-45 280-324 (1230)
5 COG1202 Superfamily II helicas 98.6 4.7E-08 1E-12 79.0 4.1 39 1-45 377-416 (830)
6 COG1204 Superfamily II helicas 98.4 1.5E-07 3.2E-12 76.4 3.2 37 1-43 185-221 (766)
7 PRK02362 ski2-like helicase; P 98.2 7.5E-07 1.6E-11 70.8 2.7 38 1-44 176-213 (737)
8 KOG0951|consensus 98.1 9.4E-07 2E-11 75.7 0.8 44 1-45 479-522 (1674)
9 PRK00254 ski2-like helicase; P 98.0 3.1E-06 6.8E-11 67.1 2.9 37 1-43 174-210 (720)
10 KOG0950|consensus 98.0 1.9E-06 4E-11 71.9 1.5 39 1-45 382-420 (1008)
11 PRK01172 ski2-like helicase; P 97.9 5.9E-06 1.3E-10 64.9 2.8 37 1-43 174-210 (674)
12 PRK09751 putative ATP-dependen 96.0 0.0095 2.1E-07 52.1 4.4 39 1-41 164-203 (1490)
13 COG1201 Lhr Lhr-like helicases 94.3 0.037 8.1E-07 46.1 2.8 28 1-29 188-215 (814)
14 KOG0949|consensus 94.2 0.039 8.4E-07 47.6 2.8 45 1-45 666-713 (1330)
15 TIGR03817 DECH_helic helicase/ 93.5 0.1 2.3E-06 42.4 4.0 37 1-40 199-235 (742)
16 PRK13767 ATP-dependent helicas 92.4 0.13 2.8E-06 42.5 3.1 30 1-30 212-245 (876)
17 KOG0952|consensus 82.5 0.65 1.4E-05 40.4 1.2 41 2-45 1089-1129(1230)
18 TIGR03158 cas3_cyano CRISPR-as 76.9 3.5 7.6E-05 30.4 3.4 16 1-18 186-201 (357)
19 COG1205 Distinct helicase fami 71.9 5.1 0.00011 33.6 3.5 41 1-44 237-278 (851)
20 KOG0951|consensus 64.4 5.7 0.00012 35.7 2.5 40 2-45 1295-1334(1674)
21 smart00466 SRA SET and RING fi 58.0 19 0.00041 24.5 3.7 39 12-57 92-133 (155)
22 PHA02653 RNA helicase NPH-II; 56.1 13 0.00028 30.5 3.1 36 1-41 326-363 (675)
23 TIGR01970 DEAH_box_HrpB ATP-de 47.1 18 0.00038 30.3 2.6 37 1-43 151-187 (819)
24 PF08456 Vmethyltransf_C: Vira 45.6 14 0.0003 26.7 1.5 28 10-41 39-66 (212)
25 PRK11664 ATP-dependent RNA hel 45.6 18 0.00039 30.2 2.4 36 1-42 154-189 (812)
26 PF10453 NUFIP1: Nuclear fragi 45.2 11 0.00024 21.7 0.8 20 2-21 13-32 (56)
27 PHA00026 cp coat protein 41.5 25 0.00055 23.3 2.2 31 4-34 21-51 (129)
28 PF07521 RMMBL: RNA-metabolisi 41.1 11 0.00023 20.1 0.3 25 7-31 18-42 (43)
29 TIGR01967 DEAH_box_HrpA ATP-de 34.2 42 0.00092 29.8 3.0 35 1-41 216-250 (1283)
30 PRK11131 ATP-dependent RNA hel 31.2 53 0.0012 29.3 3.1 36 1-42 223-258 (1294)
31 cd00268 DEADc DEAD-box helicas 30.2 37 0.0008 22.0 1.6 17 1-19 179-195 (203)
32 TIGR01587 cas3_core CRISPR-ass 28.8 29 0.00063 24.9 1.0 17 1-19 160-176 (358)
33 PRK10590 ATP-dependent RNA hel 28.5 81 0.0017 23.9 3.4 18 1-18 185-203 (456)
34 PF02698 DUF218: DUF218 domain 27.3 38 0.00082 21.4 1.2 27 5-31 82-108 (155)
35 PF11429 Colicin_D: Colicin D; 26.4 48 0.001 21.0 1.6 33 25-62 40-73 (92)
36 TIGR00297 conserved hypothetic 26.3 46 0.00099 24.2 1.6 28 7-35 122-149 (237)
37 PRK11192 ATP-dependent RNA hel 25.4 1.6E+02 0.0034 21.8 4.4 18 1-18 183-202 (434)
38 PF06953 ArsD: Arsenical resis 25.0 47 0.001 21.8 1.4 19 2-20 84-102 (123)
39 PF03476 MOSC_N: MOSC N-termin 24.4 42 0.0009 21.1 1.0 33 31-63 15-48 (120)
40 KOG2791|consensus 24.3 18 0.00038 28.6 -0.8 58 3-63 102-160 (455)
41 KOG0920|consensus 23.8 40 0.00087 29.1 1.1 35 1-41 324-358 (924)
42 COG3217 Uncharacterized Fe-S p 23.4 76 0.0016 23.8 2.3 33 30-62 14-46 (270)
43 PF01339 CheB_methylest: CheB 20.8 1.1E+02 0.0025 20.7 2.7 48 9-62 40-87 (182)
44 COG1643 HrpA HrpA-like helicas 20.8 1.2E+02 0.0026 26.0 3.2 34 1-40 200-233 (845)
No 1
>KOG0948|consensus
Probab=99.93 E-value=6.8e-27 Score=188.52 Aligned_cols=65 Identities=34% Similarity=0.633 Sum_probs=63.3
Q ss_pred CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeCCcccCCceEEeecCCCcccccCcee
Q psy13858 1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGDFR 68 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~~~~~~~~l~~~~~~~~~f~~~~~~~ 68 (70)
|||||||||.|||+||+.+|+||||||+|+|||+||+||+|+.|+ +++|+|+|++|.|+++||.+
T Consensus 271 FLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~gg---dGlylvVDek~~FrednF~~ 335 (1041)
T KOG0948|consen 271 FLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGG---DGLYLVVDEKGKFREDNFQK 335 (1041)
T ss_pred EEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCC---CeeEEEEecccccchHHHHH
Confidence 799999999999999999999999999999999999999999998 99999999999999999964
No 2
>KOG0947|consensus
Probab=99.79 E-value=3.7e-20 Score=152.11 Aligned_cols=62 Identities=60% Similarity=1.014 Sum_probs=58.8
Q ss_pred CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeCCcccCCceEEeecCCCcccccCce
Q psy13858 1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGDF 67 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~~~~~~~~l~~~~~~~~~f~~~~~~ 67 (70)
+|||||||+.|||+|||++|++.+.||+|.+|||||+||+|.+ ..++.|+|++|.|...+|+
T Consensus 439 lLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~-----~~l~kiidq~g~fl~~~~~ 500 (1248)
T KOG0947|consen 439 LLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTK-----KSLFKIIDQNGIFLLKGIK 500 (1248)
T ss_pred EEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEec-----cceehhhcccchhhhhcch
Confidence 6999999999999999999999999999999999999999997 4799999999999988775
No 3
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.77 E-value=3.1e-19 Score=146.85 Aligned_cols=62 Identities=45% Similarity=0.740 Sum_probs=59.3
Q ss_pred CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeCCcccCCceEEeecCCCcccccCce
Q psy13858 1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGDF 67 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~~~~~~~~l~~~~~~~~~f~~~~~~ 67 (70)
+|||||||+.|||+||+.+|+++|+||++++|||||+||++.. .++|.++|+++.|...||.
T Consensus 265 ~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~-----~~l~~lvde~~~~~~~~~~ 326 (1041)
T COG4581 265 FLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVG-----KGLFDLVDEKKKFNAENFP 326 (1041)
T ss_pred EEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecC-----Cceeeeecccccchhhcch
Confidence 6999999999999999999999999999999999999999986 6999999999999998875
No 4
>KOG0952|consensus
Probab=98.67 E-value=1.7e-08 Score=84.59 Aligned_cols=45 Identities=27% Similarity=0.266 Sum_probs=41.0
Q ss_pred CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeCCc
Q psy13858 1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPV 45 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~~~ 45 (70)
+||||+||.+|+|+||.......+.-+...||||||+..++...+
T Consensus 280 gLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~ 324 (1230)
T KOG0952|consen 280 GLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKG 324 (1230)
T ss_pred EeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeec
Confidence 599999999999999999877889999999999999988886654
No 5
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=98.59 E-value=4.7e-08 Score=78.97 Aligned_cols=39 Identities=41% Similarity=0.538 Sum_probs=35.0
Q ss_pred CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccce-eEEEeCCc
Q psy13858 1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLK-HFLYVGPV 45 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~-~~~~~~~~ 45 (70)
.|||||+|++|+|.-+++ .+|..+.|||||+ |-+|.+++
T Consensus 377 ~LSATVgNp~elA~~l~a------~lV~y~~RPVplErHlvf~~~e 416 (830)
T COG1202 377 YLSATVGNPEELAKKLGA------KLVLYDERPVPLERHLVFARNE 416 (830)
T ss_pred EEEeecCChHHHHHHhCC------eeEeecCCCCChhHeeeeecCc
Confidence 389999999999999999 8999999999999 66777654
No 6
>COG1204 Superfamily II helicase [General function prediction only]
Probab=98.43 E-value=1.5e-07 Score=76.40 Aligned_cols=37 Identities=43% Similarity=0.564 Sum_probs=30.9
Q ss_pred CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeC
Q psy13858 1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVG 43 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~ 43 (70)
.||||+||++|+|+||++ ..+.+++|||||...++..
T Consensus 185 gLSATlpN~~evA~wL~a------~~~~~~~rp~~l~~~v~~~ 221 (766)
T COG1204 185 GLSATLPNAEEVADWLNA------KLVESDWRPVPLRRGVPYV 221 (766)
T ss_pred EEeeecCCHHHHHHHhCC------cccccCCCCcccccCCccc
Confidence 499999999999999999 4557788888888766653
No 7
>PRK02362 ski2-like helicase; Provisional
Probab=98.22 E-value=7.5e-07 Score=70.79 Aligned_cols=38 Identities=37% Similarity=0.583 Sum_probs=33.1
Q ss_pred CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeCC
Q psy13858 1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGP 44 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~~ 44 (70)
+||||++|++++|+|++. .++.+++|||||..+++..+
T Consensus 176 ~lSATl~n~~~la~wl~~------~~~~~~~rpv~l~~~v~~~~ 213 (737)
T PRK02362 176 ALSATIGNADELADWLDA------ELVDSEWRPIDLREGVFYGG 213 (737)
T ss_pred EEcccCCCHHHHHHHhCC------CcccCCCCCCCCeeeEecCC
Confidence 589999999999999987 46788999999998887543
No 8
>KOG0951|consensus
Probab=98.08 E-value=9.4e-07 Score=75.74 Aligned_cols=44 Identities=30% Similarity=0.340 Sum_probs=37.9
Q ss_pred CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeCCc
Q psy13858 1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPV 45 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~~~ 45 (70)
+||||+||++|.|..|..-. ..++.+...||||||.+-++.-..
T Consensus 479 GLSATLPNy~DV~~Fl~v~~-~glf~fd~syRpvPL~qq~Igi~e 522 (1674)
T KOG0951|consen 479 GLSATLPNYEDVASFLRVDP-EGLFYFDSSYRPVPLKQQYIGITE 522 (1674)
T ss_pred eecccCCchhhhHHHhccCc-ccccccCcccCcCCccceEecccc
Confidence 59999999999999998865 567888899999999987776554
No 9
>PRK00254 ski2-like helicase; Provisional
Probab=98.04 E-value=3.1e-06 Score=67.14 Aligned_cols=37 Identities=38% Similarity=0.499 Sum_probs=31.3
Q ss_pred CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeC
Q psy13858 1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVG 43 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~ 43 (70)
+||||++|++++|+|++. .++..++|||||...++..
T Consensus 174 ~lSATl~n~~~la~wl~~------~~~~~~~rpv~l~~~~~~~ 210 (720)
T PRK00254 174 GLSATVGNAEELAEWLNA------ELVVSDWRPVKLRKGVFYQ 210 (720)
T ss_pred EEEccCCCHHHHHHHhCC------ccccCCCCCCcceeeEecC
Confidence 589999999999999987 3567789999998766543
No 10
>KOG0950|consensus
Probab=98.03 E-value=1.9e-06 Score=71.87 Aligned_cols=39 Identities=41% Similarity=0.755 Sum_probs=35.3
Q ss_pred CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeCCc
Q psy13858 1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPV 45 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~~~ 45 (70)
++|||+||..++++|+.+ .+..+.+|||||..|+.++..
T Consensus 382 GMSATi~N~~lL~~~L~A------~~y~t~fRPv~L~E~ik~G~~ 420 (1008)
T KOG0950|consen 382 GMSATIPNNSLLQDWLDA------FVYTTRFRPVPLKEYIKPGSL 420 (1008)
T ss_pred eeecccCChHHHHHHhhh------hheecccCcccchhccCCCcc
Confidence 589999999999999998 788899999999999977643
No 11
>PRK01172 ski2-like helicase; Provisional
Probab=97.94 E-value=5.9e-06 Score=64.90 Aligned_cols=37 Identities=41% Similarity=0.568 Sum_probs=31.6
Q ss_pred CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeC
Q psy13858 1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVG 43 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~ 43 (70)
+||||++|++++|+|++. .++..++|||||+..++..
T Consensus 174 ~lSATl~n~~~la~wl~~------~~~~~~~r~vpl~~~i~~~ 210 (674)
T PRK01172 174 ALSATVSNANELAQWLNA------SLIKSNFRPVPLKLGILYR 210 (674)
T ss_pred EEeCccCCHHHHHHHhCC------CccCCCCCCCCeEEEEEec
Confidence 489999999999999987 4577899999999766543
No 12
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=96.01 E-value=0.0095 Score=52.09 Aligned_cols=39 Identities=28% Similarity=0.313 Sum_probs=28.8
Q ss_pred CeeeecCChHHHHHHhcCcCCccEEEEee-cCCcccceeEEE
Q psy13858 1 MLSATVPNTLEFADWVGNTKKTKVYVVST-LKRPVPLKHFLY 41 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t-~~RPVPL~~~~~ 41 (70)
+|||||+|++++|+||+.. ++|.++.. ..|+++|+.++.
T Consensus 164 gLSATI~n~eevA~~L~g~--~pv~Iv~~~~~r~~~l~v~vp 203 (1490)
T PRK09751 164 GLSATVRSASDVAAFLGGD--RPVTVVNPPAMRHPQIRIVVP 203 (1490)
T ss_pred EEEeeCCCHHHHHHHhcCC--CCEEEECCCCCcccceEEEEe
Confidence 5899999999999999862 35555543 457778875543
No 13
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=94.29 E-value=0.037 Score=46.05 Aligned_cols=28 Identities=29% Similarity=0.190 Sum_probs=22.9
Q ss_pred CeeeecCChHHHHHHhcCcCCccEEEEee
Q psy13858 1 MLSATVPNTLEFADWVGNTKKTKVYVVST 29 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t 29 (70)
+|||||+|++++|.|+..... +|.+|.-
T Consensus 188 GLSATV~~~~~varfL~g~~~-~~~Iv~~ 215 (814)
T COG1201 188 GLSATVGPPEEVAKFLVGFGD-PCEIVDV 215 (814)
T ss_pred eehhccCCHHHHHHHhcCCCC-ceEEEEc
Confidence 599999999999999999653 5666654
No 14
>KOG0949|consensus
Probab=94.23 E-value=0.039 Score=47.59 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=38.3
Q ss_pred CeeeecCChHHHHHHhc---CcCCccEEEEeecCCcccceeEEEeCCc
Q psy13858 1 MLSATVPNTLEFADWVG---NTKKTKVYVVSTLKRPVPLKHFLYVGPV 45 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~---~~~~~~~~vv~t~~RPVPL~~~~~~~~~ 45 (70)
.|||||+|+..|-.|+. +-++++|+++....|=--|..+++....
T Consensus 666 ~LSATigN~~l~qkWlnq~~R~~sr~~eli~~~erySel~l~v~n~~~ 713 (1330)
T KOG0949|consen 666 VLSATIGNPNLFQKWLNQRGRAMSRNAELIDYGERYSELGLVVYNRMN 713 (1330)
T ss_pred EEecccCCHHHHHHHHHHHHhhcCCCeeeeehhhhhhhhcceeeccCC
Confidence 38999999999999998 4456789999999999999988886543
No 15
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=93.50 E-value=0.1 Score=42.38 Aligned_cols=37 Identities=19% Similarity=0.117 Sum_probs=28.4
Q ss_pred CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEE
Q psy13858 1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFL 40 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~ 40 (70)
++|||++|+.++++++.. .++.+|..+..|.+-.++.
T Consensus 199 ~~SATi~n~~~~~~~l~g---~~~~~i~~~~~~~~~~~~~ 235 (742)
T TIGR03817 199 LASATTADPAAAASRLIG---APVVAVTEDGSPRGARTVA 235 (742)
T ss_pred EEecCCCCHHHHHHHHcC---CCeEEECCCCCCcCceEEE
Confidence 479999999999998765 4677887777776655443
No 16
>PRK13767 ATP-dependent helicase; Provisional
Probab=92.39 E-value=0.13 Score=42.50 Aligned_cols=30 Identities=23% Similarity=0.180 Sum_probs=22.7
Q ss_pred CeeeecCChHHHHHHhcCcC----CccEEEEeec
Q psy13858 1 MLSATVPNTLEFADWVGNTK----KTKVYVVSTL 30 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~----~~~~~vv~t~ 30 (70)
+||||++|++++|+|+.... .++|.++...
T Consensus 212 glSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~ 245 (876)
T PRK13767 212 GLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDAR 245 (876)
T ss_pred EEecccCCHHHHHHHhcCccccCCCCceEEEccC
Confidence 58999999999999998742 3456666543
No 17
>KOG0952|consensus
Probab=82.45 E-value=0.65 Score=40.40 Aligned_cols=41 Identities=32% Similarity=0.485 Sum_probs=31.9
Q ss_pred eeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeCCc
Q psy13858 2 LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPV 45 (70)
Q Consensus 2 LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~~~ 45 (70)
||--+.|+.++|+|++.... .=+...-|||||+-++-...+
T Consensus 1089 lsta~~na~dla~wl~~~~~---~nf~~svrpvp~~~~i~gfp~ 1129 (1230)
T KOG0952|consen 1089 LSTALANANDLADWLNIKDM---YNFRPSVRPVPLEVHIDGFPG 1129 (1230)
T ss_pred HhhhhhccHHHHHHhCCCCc---CCCCcccccCCceEeecCCCc
Confidence 56678999999999998554 445567899999988875543
No 18
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=76.89 E-value=3.5 Score=30.44 Aligned_cols=16 Identities=31% Similarity=0.200 Sum_probs=11.2
Q ss_pred CeeeecCChHHHHHHhcC
Q psy13858 1 MLSATVPNTLEFADWVGN 18 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~ 18 (70)
+||||++. ++.+.|..
T Consensus 186 ~lSAT~~~--~~~~~l~~ 201 (357)
T TIGR03158 186 FLSATPDP--ALILRLQN 201 (357)
T ss_pred EEecCCCH--HHHHHHHh
Confidence 58999974 66666654
No 19
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=71.91 E-value=5.1 Score=33.61 Aligned_cols=41 Identities=32% Similarity=0.284 Sum_probs=33.4
Q ss_pred CeeeecCChHHHHHHhcCcCCccEEE-EeecCCcccceeEEEeCC
Q psy13858 1 MLSATVPNTLEFADWVGNTKKTKVYV-VSTLKRPVPLKHFLYVGP 44 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~~~~~~v-v~t~~RPVPL~~~~~~~~ 44 (70)
+.|||++|+.|+|.=+... ...+ |..+..|-.+.+++....
T Consensus 237 ~~SAT~~np~e~~~~l~~~---~f~~~v~~~g~~~~~~~~~~~~p 278 (851)
T COG1205 237 CTSATLANPGEFAEELFGR---DFEVPVDEDGSPRGLRYFVRREP 278 (851)
T ss_pred EEeccccChHHHHHHhcCC---cceeeccCCCCCCCceEEEEeCC
Confidence 3699999999999988773 3344 889999999998887654
No 20
>KOG0951|consensus
Probab=64.42 E-value=5.7 Score=35.74 Aligned_cols=40 Identities=28% Similarity=0.497 Sum_probs=32.3
Q ss_pred eeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeCCc
Q psy13858 2 LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPV 45 (70)
Q Consensus 2 LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~~~ 45 (70)
||-.+.|++++ |+... +.+.=+.-+-|||||+-++.+.+.
T Consensus 1295 ls~~lana~d~---ig~s~-~~v~Nf~p~~R~~Pl~i~i~~~~~ 1334 (1674)
T KOG0951|consen 1295 LSSSLANARDL---IGASS-SGVFNFSPSVRPVPLEIHIQSVDI 1334 (1674)
T ss_pred eehhhccchhh---ccccc-cceeecCcccCCCceeEEEEEecc
Confidence 78889999999 77765 346677889999999988876653
No 21
>smart00466 SRA SET and RING finger associated domain. Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533. Domain in SET domain containing proteins and in Deinococcus radiodurans DRA1533.
Probab=57.98 E-value=19 Score=24.53 Aligned_cols=39 Identities=28% Similarity=0.340 Sum_probs=28.9
Q ss_pred HHHHhcCcCCccEEEEeecC---CcccceeEEEeCCcccCCceEEeecC
Q psy13858 12 FADWVGNTKKTKVYVVSTLK---RPVPLKHFLYVGPVLEKNQLFLIREA 57 (70)
Q Consensus 12 ~A~Wi~~~~~~~~~vv~t~~---RPVPL~~~~~~~~~~~~~~l~~~~~~ 57 (70)
+|=..+..++.|++||.... ...|..-|.| |+|+.|.+.
T Consensus 92 lAL~~S~~~~~PVRViRg~~~~~~~~p~~gyrY-------DGLY~V~~~ 133 (155)
T smart00466 92 LALEASCRKGIPVRVVRGMKGYSKYAPGKGYIY-------DGLYRIVDY 133 (155)
T ss_pred HHHHHHHhcCCceEEEccccccCCCCCCCeEEE-------CcEEEEEEE
Confidence 45555666778999999988 3456667766 799999873
No 22
>PHA02653 RNA helicase NPH-II; Provisional
Probab=56.15 E-value=13 Score=30.49 Aligned_cols=36 Identities=14% Similarity=0.247 Sum_probs=23.9
Q ss_pred CeeeecC-ChHHHHHHhcCcCCccEEEEeecCCc-ccceeEEE
Q psy13858 1 MLSATVP-NTLEFADWVGNTKKTKVYVVSTLKRP-VPLKHFLY 41 (70)
Q Consensus 1 ~LSATvp-N~~e~A~Wi~~~~~~~~~vv~t~~RP-VPL~~~~~ 41 (70)
++|||++ +.+.|+++++. + .+|....|+ -|+++++.
T Consensus 326 LmSATl~~dv~~l~~~~~~----p-~~I~I~grt~~pV~~~yi 363 (675)
T PHA02653 326 LMTATLEDDRDRIKEFFPN----P-AFVHIPGGTLFPISEVYV 363 (675)
T ss_pred EEccCCcHhHHHHHHHhcC----C-cEEEeCCCcCCCeEEEEe
Confidence 5899998 67889988863 2 234444554 67776654
No 23
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=47.07 E-value=18 Score=30.35 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=25.2
Q ss_pred CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeC
Q psy13858 1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVG 43 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~ 43 (70)
++|||+++. .|++.++. +.+|...-|..|+++++...
T Consensus 151 lmSATl~~~-~l~~~l~~-----~~vI~~~gr~~pVe~~y~~~ 187 (819)
T TIGR01970 151 AMSATLDGE-RLSSLLPD-----APVVESEGRSFPVEIRYLPL 187 (819)
T ss_pred EEeCCCCHH-HHHHHcCC-----CcEEEecCcceeeeeEEeec
Confidence 489999864 47877753 24566667777888665543
No 24
>PF08456 Vmethyltransf_C: Viral methyltransferase C-terminal; InterPro: IPR013664 This domain is found in the central region of Virgaviridae (Tymoviruses) non-structural poly-protein, it spans the RNA helicase domain of the replicase large subunit, which is a RNA-dependent RNA polymerase active in viral RNA replication []. The poly-protein is processed into the replicase small subunit, which is the methyltransferase active in RNA capping and the RNA helicase. Methyltransferase displays a cytoplasmic capping enzyme activity. This function is necessary since all viral RNAs are synthesized in the cytoplasm, and host capping enzymes are restricted to the nucleus. The helicase region probably, which is immediately adjacent to the methyltransferase domain exhibits NTPase and RNA unwinding activities.
Probab=45.62 E-value=14 Score=26.73 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=21.2
Q ss_pred HHHHHHhcCcCCccEEEEeecCCcccceeEEE
Q psy13858 10 LEFADWVGNTKKTKVYVVSTLKRPVPLKHFLY 41 (70)
Q Consensus 10 ~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~ 41 (70)
+-||.||+-.+|... -+.+.|||=-.|-
T Consensus 39 r~fA~W~~y~~G~~~----i~~~~vPlYVEI~ 66 (212)
T PF08456_consen 39 RSFANWIGYAHGSDA----IDFRDVPLYVEIE 66 (212)
T ss_pred HHHHHHHhhhcCCce----eeeeccceEEEee
Confidence 459999999998754 3688999865443
No 25
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=45.56 E-value=18 Score=30.22 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=24.5
Q ss_pred CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEe
Q psy13858 1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYV 42 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~ 42 (70)
++|||+++ +.|++.+.. . .+|...-|..|+++++..
T Consensus 154 lmSATl~~-~~l~~~~~~---~--~~I~~~gr~~pV~~~y~~ 189 (812)
T PRK11664 154 IMSATLDN-DRLQQLLPD---A--PVIVSEGRSFPVERRYQP 189 (812)
T ss_pred EEecCCCH-HHHHHhcCC---C--CEEEecCccccceEEecc
Confidence 58999986 468887753 2 345566677788866554
No 26
>PF10453 NUFIP1: Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1); InterPro: IPR019496 Nuclear fragile X mental retardation-interacting protein 1 (Nufip1) has been implicated in the assembly of the large subunit of the ribosome [] and in telomere maintenance []. It is known to bind RNA [] and is phosphorylated upon DNA damage []. This entry represents a conserved domain found within Nufip1. Some proteins containing this region also contain a CCCH zinc finger.
Probab=45.19 E-value=11 Score=21.73 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=15.8
Q ss_pred eeeecCChHHHHHHhcCcCC
Q psy13858 2 LSATVPNTLEFADWVGNTKK 21 (70)
Q Consensus 2 LSATvpN~~e~A~Wi~~~~~ 21 (70)
.+-++.+++|++.|+..-++
T Consensus 13 ~~~~L~t~eeI~~W~eERrk 32 (56)
T PF10453_consen 13 TSIKLQTPEEIAKWIEERRK 32 (56)
T ss_pred ceeecCCHHHHHHHHHHHHH
Confidence 35577899999999987553
No 27
>PHA00026 cp coat protein
Probab=41.53 E-value=25 Score=23.25 Aligned_cols=31 Identities=23% Similarity=0.423 Sum_probs=23.0
Q ss_pred eecCChHHHHHHhcCcCCccEEEEeecCCcc
Q psy13858 4 ATVPNTLEFADWVGNTKKTKVYVVSTLKRPV 34 (70)
Q Consensus 4 ATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPV 34 (70)
|-..++...|+||+...+...+-|.-..|.-
T Consensus 21 apsnfangvaewis~nsrsqaykvt~svr~s 51 (129)
T PHA00026 21 APSNFANGVAEWISNNSRSQAYKVTASVRAS 51 (129)
T ss_pred eccccchhHHHHHhcCcccceeEEEEEeeec
Confidence 3456888999999998877766666666643
No 28
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=41.05 E-value=11 Score=20.06 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=18.3
Q ss_pred CChHHHHHHhcCcCCccEEEEeecC
Q psy13858 7 PNTLEFADWVGNTKKTKVYVVSTLK 31 (70)
Q Consensus 7 pN~~e~A~Wi~~~~~~~~~vv~t~~ 31 (70)
.+.+++.+||..++.+.+.+|-++.
T Consensus 18 ad~~~L~~~i~~~~p~~vilVHGe~ 42 (43)
T PF07521_consen 18 ADREELLEFIEQLNPRKVILVHGEP 42 (43)
T ss_dssp -BHHHHHHHHHHHCSSEEEEESSEH
T ss_pred CCHHHHHHHHHhcCCCEEEEecCCC
Confidence 4678999999998776676665543
No 29
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=34.18 E-value=42 Score=29.85 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=23.3
Q ss_pred CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEE
Q psy13858 1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLY 41 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~ 41 (70)
++|||+. ++.|++.++. .+ +|....|.-|++.++.
T Consensus 216 lmSATld-~~~fa~~F~~---ap--vI~V~Gr~~PVev~Y~ 250 (1283)
T TIGR01967 216 ITSATID-PERFSRHFNN---AP--IIEVSGRTYPVEVRYR 250 (1283)
T ss_pred EEeCCcC-HHHHHHHhcC---CC--EEEECCCcccceeEEe
Confidence 4899994 7899999864 33 3444556666664443
No 30
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=31.16 E-value=53 Score=29.34 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=23.0
Q ss_pred CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEe
Q psy13858 1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYV 42 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~ 42 (70)
++|||+ +++.|++-++. .++ |.-..|.-|++.++.+
T Consensus 223 LmSATi-d~e~fs~~F~~---apv--I~V~Gr~~pVei~y~p 258 (1294)
T PRK11131 223 ITSATI-DPERFSRHFNN---API--IEVSGRTYPVEVRYRP 258 (1294)
T ss_pred EeeCCC-CHHHHHHHcCC---CCE--EEEcCccccceEEEee
Confidence 589999 57889988764 343 3334555666655543
No 31
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=30.21 E-value=37 Score=22.02 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=10.7
Q ss_pred CeeeecCChHHHHHHhcCc
Q psy13858 1 MLSATVPNTLEFADWVGNT 19 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~ 19 (70)
++|||+++ ++.+.+...
T Consensus 179 ~~SAT~~~--~~~~~~~~~ 195 (203)
T cd00268 179 LFSATMPK--EVRDLARKF 195 (203)
T ss_pred EEeccCCH--HHHHHHHHH
Confidence 47999983 455555443
No 32
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=28.83 E-value=29 Score=24.85 Aligned_cols=17 Identities=24% Similarity=0.471 Sum_probs=12.7
Q ss_pred CeeeecCChHHHHHHhcCc
Q psy13858 1 MLSATVPNTLEFADWVGNT 19 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~ 19 (70)
++|||+| +.+.+++...
T Consensus 160 ~~SATlp--~~l~~~~~~~ 176 (358)
T TIGR01587 160 LMSATLP--KFLKEYAEKI 176 (358)
T ss_pred EEecCch--HHHHHHHhcC
Confidence 5899998 5677777654
No 33
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=28.48 E-value=81 Score=23.88 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=14.2
Q ss_pred CeeeecCC-hHHHHHHhcC
Q psy13858 1 MLSATVPN-TLEFADWVGN 18 (70)
Q Consensus 1 ~LSATvpN-~~e~A~Wi~~ 18 (70)
++|||+++ ..+++.++..
T Consensus 185 ~~SAT~~~~~~~l~~~~~~ 203 (456)
T PRK10590 185 LFSATFSDDIKALAEKLLH 203 (456)
T ss_pred EEeCCCcHHHHHHHHHHcC
Confidence 58999998 5778887765
No 34
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=27.33 E-value=38 Score=21.40 Aligned_cols=27 Identities=11% Similarity=-0.021 Sum_probs=18.8
Q ss_pred ecCChHHHHHHhcCcCCccEEEEeecC
Q psy13858 5 TVPNTLEFADWVGNTKKTKVYVVSTLK 31 (70)
Q Consensus 5 TvpN~~e~A~Wi~~~~~~~~~vv~t~~ 31 (70)
|+.|+...++++...+-+.+.+|.+.+
T Consensus 82 T~ena~~~~~~~~~~~~~~iilVT~~~ 108 (155)
T PF02698_consen 82 TYENARFSKRLLKERGWQSIILVTSPY 108 (155)
T ss_dssp HHHHHHHHHHHHHT-SSS-EEEE--CC
T ss_pred HHHHHHHHHHHHHhhcCCeEEEECCHH
Confidence 788999999999986656777777665
No 35
>PF11429 Colicin_D: Colicin D; InterPro: IPR024440 Colicin D is a bacteriocin that kills target cells by cleaving tRNA(Arg). This entry represents a domain found in the C terminus of colicin D, which is responsible for its catalytic activity []. The domain is also found in some S-type pyocins, which are also bacteriocins.; GO: 0004540 ribonuclease activity; PDB: 1TFO_A 1V74_A 1TFK_A.
Probab=26.38 E-value=48 Score=20.96 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=20.8
Q ss_pred EEEeecCCcc-cceeEEEeCCcccCCceEEeecCCCccc
Q psy13858 25 YVVSTLKRPV-PLKHFLYVGPVLEKNQLFLIREAEGEFL 62 (70)
Q Consensus 25 ~vv~t~~RPV-PL~~~~~~~~~~~~~~l~~~~~~~~~f~ 62 (70)
.+..+.||-+ +-..++-+. .+...|+|.+|.|.
T Consensus 40 tv~~GtYr~~~~skV~~N~~-----T~~~Vi~d~~G~Fv 73 (92)
T PF11429_consen 40 TVEKGTYRRVKDSKVYFNPK-----TNNVVIIDKDGNFV 73 (92)
T ss_dssp -EE--BETTSTT-EEEEETT-----TTEEEEE-TTS-EE
T ss_pred eEeccceecCCCcEEEEeCC-----CCeEEEEcCCCCEE
Confidence 4667777755 777777765 57888999999987
No 36
>TIGR00297 conserved hypothetical protein TIGR00297.
Probab=26.26 E-value=46 Score=24.19 Aligned_cols=28 Identities=14% Similarity=0.126 Sum_probs=20.6
Q ss_pred CChHHHHHHhcCcCCccEEEEeecCCccc
Q psy13858 7 PNTLEFADWVGNTKKTKVYVVSTLKRPVP 35 (70)
Q Consensus 7 pN~~e~A~Wi~~~~~~~~~vv~t~~RPVP 35 (70)
.|+|-+|.=|+...+++-++|.| +||||
T Consensus 122 a~aDT~ASEiG~ls~~~p~lItt-~k~V~ 149 (237)
T TIGR00297 122 ALSDTMASEIGKAYGKNPRLITT-LQRVE 149 (237)
T ss_pred HHcchHHHhhhhccCCCCeEeec-CccCC
Confidence 36677888888876665567754 99998
No 37
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=25.39 E-value=1.6e+02 Score=21.85 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=14.4
Q ss_pred CeeeecCC--hHHHHHHhcC
Q psy13858 1 MLSATVPN--TLEFADWVGN 18 (70)
Q Consensus 1 ~LSATvpN--~~e~A~Wi~~ 18 (70)
++|||++. ..+|++++..
T Consensus 183 ~~SAT~~~~~~~~~~~~~~~ 202 (434)
T PRK11192 183 LFSATLEGDAVQDFAERLLN 202 (434)
T ss_pred EEEeecCHHHHHHHHHHHcc
Confidence 58999974 6789998865
No 38
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=24.99 E-value=47 Score=21.75 Aligned_cols=19 Identities=26% Similarity=0.581 Sum_probs=11.2
Q ss_pred eeeecCChHHHHHHhcCcC
Q psy13858 2 LSATVPNTLEFADWVGNTK 20 (70)
Q Consensus 2 LSATvpN~~e~A~Wi~~~~ 20 (70)
++...|..+||++|++...
T Consensus 84 ~~G~YPt~eEl~~~~~i~~ 102 (123)
T PF06953_consen 84 KTGRYPTNEELAEWLGISF 102 (123)
T ss_dssp EESS---HHHHHHHHT--G
T ss_pred EecCCCCHHHHHHHhCCCc
Confidence 3456799999999998743
No 39
>PF03476 MOSC_N: MOSC N-terminal beta barrel domain; InterPro: IPR005303 This domain is found to the N terminus of MOSC domain (IPR005302 from INTERPRO). The function of this domain is unknown, however it is predicted to adopt a beta barrel fold.; PDB: 2EXN_A.
Probab=24.39 E-value=42 Score=21.09 Aligned_cols=33 Identities=18% Similarity=0.351 Sum_probs=11.0
Q ss_pred CCcccceeEEEeCCcc-cCCceEEeecCCCcccc
Q psy13858 31 KRPVPLKHFLYVGPVL-EKNQLFLIREAEGEFLT 63 (70)
Q Consensus 31 ~RPVPL~~~~~~~~~~-~~~~l~~~~~~~~~f~~ 63 (70)
-|+++|+.--+...|. ..|..+.|+|++|.|..
T Consensus 15 ~~g~~~~~~~~~~~Gl~~~DR~~~l~d~~g~~it 48 (120)
T PF03476_consen 15 CRGIEVDEAEVTPSGLKAGDRRFMLVDEDGRFIT 48 (120)
T ss_dssp -----------------GT--SEEEEETTS-EE-
T ss_pred cccccccccccccccCCccchhheeECCCCCEEe
Confidence 5677777666655564 37899999999998864
No 40
>KOG2791|consensus
Probab=24.35 E-value=18 Score=28.59 Aligned_cols=58 Identities=22% Similarity=0.226 Sum_probs=41.3
Q ss_pred eeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeCCc-ccCCceEEeecCCCcccc
Q psy13858 3 SATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPV-LEKNQLFLIREAEGEFLT 63 (70)
Q Consensus 3 SATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~~~-~~~~~l~~~~~~~~~f~~ 63 (70)
|-|+-|++-|++|-.. +.+.|+.-.-||+=|+--+=+-.. +--+...+|+++++.|-+
T Consensus 102 ~~~~~Nadkfgdla~~---~~vlV~qVHnRp~Ylr~lveSlrk~kGI~~tLlifSHD~~~~e 160 (455)
T KOG2791|consen 102 SPRNTNADKFGDLAKD---RVVLVLQVHNRPQYLRVLVESLRKVKGISETLLIFSHDGYFEE 160 (455)
T ss_pred CccccchhhcCccccc---eEEEEEEEcCcHHHHHHHHHHHHhccCccceEEEEeccchHHH
Confidence 5678899999999766 667888888999988743321111 123577889999988754
No 41
>KOG0920|consensus
Probab=23.82 E-value=40 Score=29.09 Aligned_cols=35 Identities=29% Similarity=0.560 Sum_probs=28.5
Q ss_pred CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEE
Q psy13858 1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLY 41 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~ 41 (70)
+||||+- ++.|.+-.+. |-++....|.-|...|+.
T Consensus 324 LMSAT~d-ae~fs~YF~~-----~pvi~i~grtfpV~~~fL 358 (924)
T KOG0920|consen 324 LMSATLD-AELFSDYFGG-----CPVITIPGRTFPVKEYFL 358 (924)
T ss_pred Eeeeecc-hHHHHHHhCC-----CceEeecCCCcchHHHHH
Confidence 5899995 9999999994 568888889888885544
No 42
>COG3217 Uncharacterized Fe-S protein [General function prediction only]
Probab=23.37 E-value=76 Score=23.76 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=29.2
Q ss_pred cCCcccceeEEEeCCcccCCceEEeecCCCccc
Q psy13858 30 LKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFL 62 (70)
Q Consensus 30 ~~RPVPL~~~~~~~~~~~~~~l~~~~~~~~~f~ 62 (70)
..|++.|++-.....+-..|.+|.++|.+|.|.
T Consensus 14 Sl~g~~l~~a~v~~~Gl~~DR~fml~d~dG~~i 46 (270)
T COG3217 14 SLRGERLSRALVDASGLAGDRRFMLVDPDGRFI 46 (270)
T ss_pred cccchhhhhheeeccCCccceEEEEEcCCCcee
Confidence 589999999888888888899999999999875
No 43
>PF01339 CheB_methylest: CheB methylesterase; InterPro: IPR000673 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the signal transduction response regulator CheB involved in chemotaxis. CheB methylesterase is responsible for removing the methyl group from the gamma-glutamyl methyl ester residues in the methyl-accepting chemotaxis proteins (MCP). The enzyme catalyses the reaction: protein L-glutamate O-methyl ester and water is converted to protein L-glutamate and methanol. CheB is regulated through phosphorylation by CheA. The N-terminal region of the protein is similar to that of other regulatory components of sensory transduction systems. The Myxococcus xanthus FrzG protein also belongs to this family, and is required for the normal aggregation of cells during fruiting body formation.; GO: 0000156 two-component response regulator activity, 0008984 protein-glutamate methylesterase activity, 0000160 two-component signal transduction system (phosphorelay), 0006935 chemotaxis, 0005737 cytoplasm; PDB: 1CHD_A 1A2O_B 3SFT_A.
Probab=20.81 E-value=1.1e+02 Score=20.66 Aligned_cols=48 Identities=15% Similarity=0.102 Sum_probs=26.4
Q ss_pred hHHHHHHhcCcCCccEEEEeecCCcccceeEEEeCCcccCCceEEeecCCCccc
Q psy13858 9 TLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFL 62 (70)
Q Consensus 9 ~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~~~~~~~~l~~~~~~~~~f~ 62 (70)
...|++||++...-++..+....+--|=.-|+-+.+ -++.++++|.|.
T Consensus 40 ~~~l~~~L~~~t~l~V~~a~~g~~l~~g~vYi~p~~------~~l~i~~~~~~~ 87 (182)
T PF01339_consen 40 TSSLAERLARHTSLPVREAEDGEPLEPGTVYIAPPG------YHLTIEEDGRLR 87 (182)
T ss_dssp HHHHHHHHHHHSSSEEEE--TT-B--TTEEEE--TT------SEEEEECCEEEE
T ss_pred chHHHHHHhCcCCCeEEEcCCCCEecCCEEEEeCCC------ceEEEEeCCEEE
Confidence 456999999988888877776665444445555543 244445555554
No 44
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=20.80 E-value=1.2e+02 Score=25.97 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=25.5
Q ss_pred CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEE
Q psy13858 1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFL 40 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~ 40 (70)
.+|||+ |++.|+.-++. |-++..+.|-=|.+-++
T Consensus 200 imSATl-d~~rfs~~f~~-----apvi~i~GR~fPVei~Y 233 (845)
T COG1643 200 IMSATL-DAERFSAYFGN-----APVIEIEGRTYPVEIRY 233 (845)
T ss_pred EEeccc-CHHHHHHHcCC-----CCEEEecCCccceEEEe
Confidence 379998 78889999985 24666777777777544
Done!