Query psy13858
Match_columns 70
No_of_seqs 105 out of 552
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 22:12:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13858.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13858hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xgj_A ATP-dependent RNA helic 99.1 7.8E-11 2.7E-15 95.1 4.0 64 1-67 228-291 (1010)
2 4a4z_A Antiviral helicase SKI2 99.0 1.1E-10 3.8E-15 94.0 3.8 62 1-67 183-244 (997)
3 3l9o_A ATP-dependent RNA helic 98.9 3.5E-10 1.2E-14 92.0 3.7 64 1-67 326-389 (1108)
4 4f92_B U5 small nuclear ribonu 98.9 3.7E-10 1.3E-14 95.3 1.1 44 1-44 249-292 (1724)
5 4f92_B U5 small nuclear ribonu 98.6 2E-08 6.8E-13 84.9 3.6 43 1-44 1088-1130(1724)
6 2va8_A SSO2462, SKI2-type heli 98.0 5.5E-06 1.9E-10 63.0 4.2 38 1-44 180-217 (715)
7 2p6r_A Afuhel308 helicase; pro 97.9 7.4E-06 2.5E-10 62.5 4.3 37 1-43 177-213 (702)
8 2zj8_A DNA helicase, putative 97.9 6.7E-06 2.3E-10 62.8 4.0 37 1-43 174-210 (720)
9 1q0u_A Bstdead; DEAD protein, 88.7 0.12 4E-06 33.3 0.7 31 1-33 186-216 (219)
10 2xau_A PRE-mRNA-splicing facto 81.0 0.71 2.4E-05 36.3 2.0 36 1-42 245-280 (773)
11 3dkp_A Probable ATP-dependent 71.2 1.5 5.1E-05 28.3 1.3 25 1-27 215-239 (245)
12 2gxq_A Heat resistant RNA depe 65.2 2.7 9.2E-05 26.1 1.5 18 1-18 180-198 (207)
13 1t6n_A Probable ATP-dependent 55.0 6.4 0.00022 24.8 1.9 18 1-18 195-213 (220)
14 3fe2_A Probable ATP-dependent 51.8 6.7 0.00023 25.3 1.7 18 1-18 212-230 (242)
15 2oxc_A Probable ATP-dependent 49.6 11 0.00037 24.1 2.4 22 1-24 203-224 (230)
16 3iuy_A Probable ATP-dependent 46.3 8.9 0.0003 24.3 1.6 16 1-16 203-219 (228)
17 2p19_A Transcriptional regulat 39.0 58 0.002 19.0 4.7 42 2-44 92-138 (149)
18 2ikk_A Hypothetical transcript 38.4 58 0.002 19.8 4.5 42 2-44 116-162 (173)
19 1qde_A EIF4A, translation init 37.6 15 0.00051 23.0 1.6 16 1-16 191-207 (224)
20 4a2p_A RIG-I, retinoic acid in 36.3 7.6 0.00026 27.5 0.0 17 1-17 171-189 (556)
21 1vec_A ATP-dependent RNA helic 36.1 15 0.00052 22.6 1.4 8 1-8 182-189 (206)
22 2pl3_A Probable ATP-dependent 36.1 17 0.00057 23.1 1.7 18 1-18 207-225 (236)
23 3kgk_A Arsenical resistance op 36.0 18 0.00061 22.6 1.7 18 2-19 84-101 (110)
24 2ogg_A Trehalose operon transc 35.8 67 0.0023 18.8 4.4 42 2-44 94-140 (152)
25 3ber_A Probable ATP-dependent 35.1 19 0.00066 23.5 1.9 18 1-18 222-240 (249)
26 3bwg_A Uncharacterized HTH-typ 34.6 78 0.0027 20.8 4.9 42 2-44 180-226 (239)
27 1oyw_A RECQ helicase, ATP-depe 34.2 23 0.00078 26.1 2.3 31 1-33 179-211 (523)
28 3hfi_A Putative regulator; str 33.0 82 0.0028 19.0 4.8 42 2-44 110-156 (170)
29 1wrb_A DJVLGB; RNA helicase, D 32.9 24 0.00084 22.6 2.1 18 1-18 214-232 (253)
30 3bor_A Human initiation factor 31.7 20 0.00067 23.0 1.5 17 1-17 209-226 (237)
31 2ooi_A SA0254 protein; staphyl 31.7 83 0.0028 18.7 4.9 42 2-44 106-152 (162)
32 2v1x_A ATP-dependent DNA helic 31.5 45 0.0015 25.2 3.6 39 1-42 205-245 (591)
33 3lhe_A GNTR family transcripti 31.4 81 0.0028 18.5 4.6 41 2-43 94-139 (143)
34 2pkh_A Histidine utilization r 31.4 79 0.0027 18.3 4.7 41 2-43 93-137 (148)
35 2fa1_A Probable transcriptiona 30.5 86 0.0029 18.4 5.2 42 2-44 105-152 (160)
36 3oln_A E3 ubiquitin-protein li 29.6 17 0.00059 25.5 1.0 30 20-56 141-175 (231)
37 1wgn_A UBAP1, ubiquitin associ 27.9 17 0.00057 20.9 0.5 17 2-18 40-56 (63)
38 3ddv_A Transcriptional regulat 27.1 99 0.0034 18.1 4.7 41 2-43 91-136 (145)
39 3i5x_A ATP-dependent RNA helic 26.5 15 0.0005 26.6 0.1 18 1-18 269-287 (563)
40 3cnv_A Putative GNTR-family tr 26.4 81 0.0028 18.5 3.6 41 2-43 107-152 (162)
41 3q0b_X Histone-lysine N-methyl 25.8 53 0.0018 21.5 2.8 33 17-56 98-135 (167)
42 3rc3_A ATP-dependent RNA helic 25.5 27 0.00093 27.2 1.5 33 1-38 276-308 (677)
43 1rif_A DAR protein, DNA helica 24.8 12 0.00043 24.6 -0.5 11 1-11 257-267 (282)
44 3fde_A E3 ubiquitin-protein li 23.4 68 0.0023 22.1 3.0 30 20-56 117-151 (212)
45 2exn_A Hypothetical protein BO 22.8 43 0.0015 20.7 1.8 21 9-29 97-117 (136)
46 2wv0_A YVOA, HTH-type transcri 22.7 1.7E+02 0.0058 19.2 5.1 42 2-44 185-231 (243)
47 3fho_A ATP-dependent RNA helic 22.0 34 0.0012 24.8 1.4 18 1-18 296-314 (508)
48 2pb7_A E3 ubiquitin-protein li 21.7 60 0.002 22.8 2.5 31 20-57 125-160 (239)
49 3pey_A ATP-dependent RNA helic 20.4 29 0.00099 23.0 0.6 18 1-18 182-200 (395)
No 1
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.06 E-value=7.8e-11 Score=95.07 Aligned_cols=64 Identities=31% Similarity=0.611 Sum_probs=57.0
Q ss_pred CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeCCcccCCceEEeecCCCcccccCce
Q psy13858 1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGDF 67 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~~~~~~~~l~~~~~~~~~f~~~~~~ 67 (70)
+||||+||+.+||+||+..+++++.++.+++||+||+++++..++ +.++.+++.++.|...+|.
T Consensus 228 ~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 291 (1010)
T 2xgj_A 228 FLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHG---DGIYLVVDEKSTFREENFQ 291 (1010)
T ss_dssp EEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTS---SCCEEEECTTCCBCHHHHH
T ss_pred EEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCC---cceeeeeccccccchHHHH
Confidence 589999999999999999888899999999999999999998765 7889999999888765543
No 2
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.03 E-value=1.1e-10 Score=93.98 Aligned_cols=62 Identities=47% Similarity=0.781 Sum_probs=56.9
Q ss_pred CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeCCcccCCceEEeecCCCcccccCce
Q psy13858 1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGDF 67 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~~~~~~~~l~~~~~~~~~f~~~~~~ 67 (70)
+||||++|+.+|++|++..++++|.++.+.+||+||+++++.. +.++.++++++.|...+|.
T Consensus 183 lLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~-----~~~~~~~~~~~~~~~~~~~ 244 (997)
T 4a4z_A 183 LLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAK-----KELIPVINQNSEFLEANFR 244 (997)
T ss_dssp EEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEET-----TEEEEEECTTCCBCHHHHH
T ss_pred EEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecC-----CcchhcccchhhhhHHHHH
Confidence 5899999999999999999989999999999999999999985 5899999999999877764
No 3
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=98.95 E-value=3.5e-10 Score=92.02 Aligned_cols=64 Identities=31% Similarity=0.611 Sum_probs=58.0
Q ss_pred CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeCCcccCCceEEeecCCCcccccCce
Q psy13858 1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGDF 67 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~~~~~~~~l~~~~~~~~~f~~~~~~ 67 (70)
+||||+||+.+|++|++..++.++.++.+++||+||+++++...+ ++++.++++.+.|...+|.
T Consensus 326 ~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~---~~~~~~vd~~~~~~~~~~~ 389 (1108)
T 3l9o_A 326 FLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHG---DGIYLVVDEKSTFREENFQ 389 (1108)
T ss_dssp EEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTS---SCCEEEEETTTEECHHHHH
T ss_pred EEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCC---cceeeeeccccchhhhhHH
Confidence 589999999999999999999999999999999999999998776 7899999999988766553
No 4
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.86 E-value=3.7e-10 Score=95.28 Aligned_cols=44 Identities=27% Similarity=0.317 Sum_probs=39.5
Q ss_pred CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeCC
Q psy13858 1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGP 44 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~~ 44 (70)
+|||||||++|+|+||+..+.+.++++.+++|||||+++++...
T Consensus 249 ~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~ 292 (1724)
T 4f92_B 249 GLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGIT 292 (1724)
T ss_dssp EEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEEC
T ss_pred EEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccC
Confidence 58999999999999999988888999999999999998776443
No 5
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.60 E-value=2e-08 Score=84.94 Aligned_cols=43 Identities=28% Similarity=0.459 Sum_probs=37.9
Q ss_pred CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeCC
Q psy13858 1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGP 44 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~~ 44 (70)
+|||||+|++|||+||+... ..++.+.+++|||||+.+++...
T Consensus 1088 ~lSATl~N~~dla~WL~~~~-~~~~~~~~~~RPvpL~~~i~~~~ 1130 (1724)
T 4f92_B 1088 ALSSSLSNAKDVAHWLGCSA-TSTFNFHPNVRPVPLELHIQGFN 1130 (1724)
T ss_dssp EEESCBTTHHHHHHHHTCCS-TTEEECCGGGCSSCEEEEEEEEC
T ss_pred EEeCCCCCHHHHHHHhCCCC-CCeEEeCCCCCCCCeEEEEEecc
Confidence 58999999999999999855 46889999999999999987654
No 6
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=97.97 E-value=5.5e-06 Score=63.04 Aligned_cols=38 Identities=39% Similarity=0.491 Sum_probs=32.8
Q ss_pred CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeCC
Q psy13858 1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGP 44 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~~ 44 (70)
+||||++|+++|++|++. .++..++||+||+.+++..+
T Consensus 180 ~lSATl~n~~~~~~~l~~------~~~~~~~r~~~l~~~~~~~~ 217 (715)
T 2va8_A 180 ALSATISNYKQIAKWLGA------EPVATNWRPVPLIEGVIYPE 217 (715)
T ss_dssp EEESCCTTHHHHHHHHTC------EEEECCCCSSCEEEEEEEEC
T ss_pred EEcCCCCCHHHHHHHhCC------CccCCCCCCCCceEEEEecC
Confidence 589999999999999986 67899999999997766443
No 7
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=97.93 E-value=7.4e-06 Score=62.46 Aligned_cols=37 Identities=38% Similarity=0.479 Sum_probs=32.6
Q ss_pred CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeC
Q psy13858 1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVG 43 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~ 43 (70)
+||||++|++++++|++. .++..+.||+|++.+++..
T Consensus 177 ~lSATl~n~~~~~~~l~~------~~~~~~~r~~~l~~~~~~~ 213 (702)
T 2p6r_A 177 GLSATAPNVTEIAEWLDA------DYYVSDWRPVPLVEGVLCE 213 (702)
T ss_dssp EEECCCTTHHHHHHHTTC------EEEECCCCSSCEEEEEECS
T ss_pred EECCCcCCHHHHHHHhCC------CcccCCCCCccceEEEeeC
Confidence 589999999999999986 6789999999999877643
No 8
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=97.93 E-value=6.7e-06 Score=62.84 Aligned_cols=37 Identities=32% Similarity=0.489 Sum_probs=32.4
Q ss_pred CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeC
Q psy13858 1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVG 43 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~ 43 (70)
+||||++|++++++|++. .++..++||||++.+++..
T Consensus 174 ~lSATl~n~~~~~~~l~~------~~~~~~~rp~~l~~~~~~~ 210 (720)
T 2zj8_A 174 GLSATIGNPEELAEWLNA------ELIVSDWRPVKLRRGVFYQ 210 (720)
T ss_dssp EEECCCSCHHHHHHHTTE------EEEECCCCSSEEEEEEEET
T ss_pred EEcCCcCCHHHHHHHhCC------cccCCCCCCCcceEEEEeC
Confidence 589999999999999975 6788999999999877653
No 9
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=88.71 E-value=0.12 Score=33.27 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=19.7
Q ss_pred CeeeecCChHHHHHHhcCcCCccEEEEeecCCc
Q psy13858 1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRP 33 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RP 33 (70)
+||||+|+ ++.+|+...-+.|+.+.....||
T Consensus 186 ~~SAT~~~--~~~~~~~~~~~~p~~~~~~~~~~ 216 (219)
T 1q0u_A 186 VFSATIPE--KLKPFLKKYMENPTFVHVLEHHH 216 (219)
T ss_dssp EEESCCCG--GGHHHHHHHCSSCEEEECC----
T ss_pred EEecCCCH--HHHHHHHHHcCCCeEEEeecccc
Confidence 58999976 66777776666787666655553
No 10
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=80.95 E-value=0.71 Score=36.29 Aligned_cols=36 Identities=17% Similarity=0.384 Sum_probs=27.4
Q ss_pred CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEe
Q psy13858 1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYV 42 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~ 42 (70)
+||||+ |+++|++|++. . .++....|+.|++.++..
T Consensus 245 l~SAT~-~~~~l~~~~~~---~--~vi~v~gr~~pv~~~~~~ 280 (773)
T 2xau_A 245 IMSATL-DAEKFQRYFND---A--PLLAVPGRTYPVELYYTP 280 (773)
T ss_dssp EEESCS-CCHHHHHHTTS---C--CEEECCCCCCCEEEECCS
T ss_pred EEeccc-cHHHHHHHhcC---C--CcccccCcccceEEEEec
Confidence 489999 78999999975 2 356667788888866544
No 11
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=71.24 E-value=1.5 Score=28.32 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=16.8
Q ss_pred CeeeecCChHHHHHHhcCcCCccEEEE
Q psy13858 1 MLSATVPNTLEFADWVGNTKKTKVYVV 27 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv 27 (70)
+||||+|+ ++.+|+...-+.++.+.
T Consensus 215 ~~SAT~~~--~v~~~~~~~l~~p~~i~ 239 (245)
T 3dkp_A 215 MFSATFAY--DVEQWCKLNLDNVISVS 239 (245)
T ss_dssp EEESSCCH--HHHHHHHHHSSSCEEEE
T ss_pred EEeccCCH--HHHHHHHHhCCCCEEEE
Confidence 58999964 67777776555665443
No 12
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=65.20 E-value=2.7 Score=26.08 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=13.7
Q ss_pred CeeeecCC-hHHHHHHhcC
Q psy13858 1 MLSATVPN-TLEFADWVGN 18 (70)
Q Consensus 1 ~LSATvpN-~~e~A~Wi~~ 18 (70)
++|||+++ .+++++++-.
T Consensus 180 ~~SAT~~~~~~~~~~~~~~ 198 (207)
T 2gxq_A 180 LFSATLPSWAKRLAERYMK 198 (207)
T ss_dssp EECSSCCHHHHHHHHHHCS
T ss_pred EEEEecCHHHHHHHHHHcC
Confidence 58999987 5678887654
No 13
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=55.02 E-value=6.4 Score=24.76 Aligned_cols=18 Identities=22% Similarity=0.135 Sum_probs=12.6
Q ss_pred CeeeecCC-hHHHHHHhcC
Q psy13858 1 MLSATVPN-TLEFADWVGN 18 (70)
Q Consensus 1 ~LSATvpN-~~e~A~Wi~~ 18 (70)
+||||+++ .+++++.+-.
T Consensus 195 ~~SAT~~~~~~~~~~~~~~ 213 (220)
T 1t6n_A 195 MFSATLSKEIRPVCRKFMQ 213 (220)
T ss_dssp EEESCCCTTTHHHHHTTCS
T ss_pred EEEeecCHHHHHHHHHHcC
Confidence 58999987 4667765443
No 14
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=51.75 E-value=6.7 Score=25.31 Aligned_cols=18 Identities=33% Similarity=0.268 Sum_probs=12.4
Q ss_pred CeeeecCC-hHHHHHHhcC
Q psy13858 1 MLSATVPN-TLEFADWVGN 18 (70)
Q Consensus 1 ~LSATvpN-~~e~A~Wi~~ 18 (70)
++|||+|+ .+++++.+-.
T Consensus 212 ~~SAT~~~~~~~~~~~~l~ 230 (242)
T 3fe2_A 212 MWSATWPKEVRQLAEDFLK 230 (242)
T ss_dssp EEESCCCHHHHHHHHHHCS
T ss_pred EEEeecCHHHHHHHHHHCC
Confidence 58999987 4556666543
No 15
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=49.63 E-value=11 Score=24.09 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=14.4
Q ss_pred CeeeecCChHHHHHHhcCcCCccE
Q psy13858 1 MLSATVPNTLEFADWVGNTKKTKV 24 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~~~~~ 24 (70)
+||||+++ ++.+++...-+.++
T Consensus 203 ~lSAT~~~--~~~~~~~~~~~~p~ 224 (230)
T 2oxc_A 203 AVSATYPE--FLANALTKYMRDPT 224 (230)
T ss_dssp EEESCCCH--HHHHHHTTTCSSCE
T ss_pred EEEeccCH--HHHHHHHHHcCCCe
Confidence 58999864 46677766544454
No 16
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=46.31 E-value=8.9 Score=24.28 Aligned_cols=16 Identities=44% Similarity=0.320 Sum_probs=10.8
Q ss_pred CeeeecCCh-HHHHHHh
Q psy13858 1 MLSATVPNT-LEFADWV 16 (70)
Q Consensus 1 ~LSATvpN~-~e~A~Wi 16 (70)
++|||+|+. ++++..+
T Consensus 203 ~~SAT~~~~~~~~~~~~ 219 (228)
T 3iuy_A 203 MTSATWPDTVRQLALSY 219 (228)
T ss_dssp EEESCCCHHHHHHHHTT
T ss_pred EEEeeCCHHHHHHHHHH
Confidence 489999864 4555544
No 17
>2p19_A Transcriptional regulator; bacterial regulatory protein, GNTR family, MCSG, structural PSI-2, protein structure initiative; 2.10A {Corynebacterium glutamicum} SCOP: d.190.1.2
Probab=39.01 E-value=58 Score=19.04 Aligned_cols=42 Identities=12% Similarity=0.056 Sum_probs=30.3
Q ss_pred eeeecCChHHHHHHhcCcCCccEEEEe-----ecCCcccceeEEEeCC
Q psy13858 2 LSATVPNTLEFADWVGNTKKTKVYVVS-----TLKRPVPLKHFLYVGP 44 (70)
Q Consensus 2 LSATvpN~~e~A~Wi~~~~~~~~~vv~-----t~~RPVPL~~~~~~~~ 44 (70)
++|+.++. +.|+.|+...+.||.++. .+-+||-....+|..+
T Consensus 92 i~a~~~~~-~~a~~L~i~~g~p~l~i~r~~~~~~g~pve~~~~~~~~d 138 (149)
T 2p19_A 92 IGARRAVG-EESTLLDIEDGGPLLTVERVALDNSGQVIELGSHCYRPD 138 (149)
T ss_dssp EEEEECCT-THHHHHTCCTTCEEEEEEEEEECTTSCEEEEEEEEECTT
T ss_pred EEEEcCCH-HHHhhcCCCCCCeEEEEEEEEECCCCCEEEEEEEEEcCc
Confidence 56777775 578999999999876553 3567776667777654
No 18
>2ikk_A Hypothetical transcriptional regulator YURK; APC85442, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 1.80A {Bacillus subtilis} SCOP: d.190.1.2
Probab=38.42 E-value=58 Score=19.79 Aligned_cols=42 Identities=12% Similarity=0.216 Sum_probs=30.8
Q ss_pred eeeecCChHHHHHHhcCcCCccEEEEe-----ecCCcccceeEEEeCC
Q psy13858 2 LSATVPNTLEFADWVGNTKKTKVYVVS-----TLKRPVPLKHFLYVGP 44 (70)
Q Consensus 2 LSATvpN~~e~A~Wi~~~~~~~~~vv~-----t~~RPVPL~~~~~~~~ 44 (70)
++|+.++. +.|+.|+...+.||..+. .+-+||-....+|..+
T Consensus 116 i~a~~a~~-~~a~~L~i~~g~pvl~i~r~~~~~~g~pvey~~~~~~~d 162 (173)
T 2ikk_A 116 LNVVYAQQ-EESKYLDCDIGDALFEIDKTAFTSNDQPIYCSLFLMHTN 162 (173)
T ss_dssp EEEEECCH-HHHHHHTCCTTCEEEEEEEEEEEGGGEEEEEEEEEEETT
T ss_pred EEEEcCCH-HHHhhcCcCCCCcEEEEEEEEECCCCCEEEEEEEEEeCc
Confidence 56777775 678999999999876553 3567777777777653
No 19
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=37.57 E-value=15 Score=22.97 Aligned_cols=16 Identities=50% Similarity=0.663 Sum_probs=10.8
Q ss_pred CeeeecCCh-HHHHHHh
Q psy13858 1 MLSATVPNT-LEFADWV 16 (70)
Q Consensus 1 ~LSATvpN~-~e~A~Wi 16 (70)
+||||+++. .++++.+
T Consensus 191 ~lSAT~~~~~~~~~~~~ 207 (224)
T 1qde_A 191 LLSATMPNDVLEVTTKF 207 (224)
T ss_dssp EEESSCCHHHHHHHHHH
T ss_pred EEEeecCHHHHHHHHHH
Confidence 589999874 4555544
No 20
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=36.28 E-value=7.6 Score=27.48 Aligned_cols=17 Identities=24% Similarity=0.265 Sum_probs=13.1
Q ss_pred Ceeeec--CChHHHHHHhc
Q psy13858 1 MLSATV--PNTLEFADWVG 17 (70)
Q Consensus 1 ~LSATv--pN~~e~A~Wi~ 17 (70)
+||||. +|+.++++|+.
T Consensus 171 ~lSAT~~~~~~~~~~~~~~ 189 (556)
T 4a2p_A 171 GLTASVGVGNAKNIEETIE 189 (556)
T ss_dssp EEESCCCCTTCSSHHHHHH
T ss_pred EEeCCcccCchhhHHHHHH
Confidence 589999 57777777765
No 21
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=36.12 E-value=15 Score=22.56 Aligned_cols=8 Identities=50% Similarity=0.609 Sum_probs=6.3
Q ss_pred CeeeecCC
Q psy13858 1 MLSATVPN 8 (70)
Q Consensus 1 ~LSATvpN 8 (70)
+||||+|+
T Consensus 182 ~~SAT~~~ 189 (206)
T 1vec_A 182 LYSATFPL 189 (206)
T ss_dssp EEESCCCH
T ss_pred EEEeeCCH
Confidence 58999974
No 22
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=36.12 E-value=17 Score=23.10 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=12.3
Q ss_pred CeeeecCC-hHHHHHHhcC
Q psy13858 1 MLSATVPN-TLEFADWVGN 18 (70)
Q Consensus 1 ~LSATvpN-~~e~A~Wi~~ 18 (70)
+||||+++ ..+++...-.
T Consensus 207 ~~SAT~~~~~~~~~~~~~~ 225 (236)
T 2pl3_A 207 LFSATQTKSVKDLARLSLK 225 (236)
T ss_dssp EEESSCCHHHHHHHHHSCS
T ss_pred EEEeeCCHHHHHHHHHhCC
Confidence 58999976 4567766543
No 23
>3kgk_A Arsenical resistance operon trans-acting represso; alpha+beta, chaperone, DNA-binding, RE transcription, transcription regulation; 1.40A {Escherichia coli} PDB: 3mwh_A
Probab=35.99 E-value=18 Score=22.58 Aligned_cols=18 Identities=28% Similarity=0.667 Sum_probs=14.8
Q ss_pred eeeecCChHHHHHHhcCc
Q psy13858 2 LSATVPNTLEFADWVGNT 19 (70)
Q Consensus 2 LSATvpN~~e~A~Wi~~~ 19 (70)
++.-+|..+||++|++-.
T Consensus 84 ~~G~yPt~eEl~~~lgi~ 101 (110)
T 3kgk_A 84 MAGRYPKRAELARWFGIP 101 (110)
T ss_dssp EESSCCCHHHHHHHHTCC
T ss_pred EeccCCCHHHHHHHhCCC
Confidence 455679999999999973
No 24
>2ogg_A Trehalose operon transcriptional repressor; gene repressor, sugar binding, structural genomics, PSI-2, P structure initiative; 2.50A {Bacillus subtilis} SCOP: d.190.1.2
Probab=35.81 E-value=67 Score=18.82 Aligned_cols=42 Identities=10% Similarity=-0.132 Sum_probs=30.1
Q ss_pred eeeecCChHHHHHHhcCcCCccEEEEe-----ecCCcccceeEEEeCC
Q psy13858 2 LSATVPNTLEFADWVGNTKKTKVYVVS-----TLKRPVPLKHFLYVGP 44 (70)
Q Consensus 2 LSATvpN~~e~A~Wi~~~~~~~~~vv~-----t~~RPVPL~~~~~~~~ 44 (70)
++|+.++. +.|+.|+...+.|+..+. .+-+||-....+|..+
T Consensus 94 i~a~~a~~-~~a~~L~i~~g~p~l~i~r~~~~~~g~pve~~~~~~~~d 140 (152)
T 2ogg_A 94 IVAEPCTD-EDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLD 140 (152)
T ss_dssp EEEEECCH-HHHHHSCCTTCCEEEEEEEEEEETTSCEEEEEEEEEEGG
T ss_pred EEEECCCH-HHHHhcCCCCCCeEEEEEEEEECCCCcEEEEEEEEEecc
Confidence 46777765 678999999898876553 4567777777777653
No 25
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=35.13 E-value=19 Score=23.48 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=12.3
Q ss_pred CeeeecCC-hHHHHHHhcC
Q psy13858 1 MLSATVPN-TLEFADWVGN 18 (70)
Q Consensus 1 ~LSATvpN-~~e~A~Wi~~ 18 (70)
+||||+++ ..+++++.-.
T Consensus 222 ~~SAT~~~~v~~~~~~~l~ 240 (249)
T 3ber_A 222 LFSATMTKKVQKLQRAALK 240 (249)
T ss_dssp EEESSCCHHHHHHHHHHCS
T ss_pred EEeccCCHHHHHHHHHHCC
Confidence 58999986 4556766543
No 26
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=34.63 E-value=78 Score=20.78 Aligned_cols=42 Identities=19% Similarity=0.182 Sum_probs=30.7
Q ss_pred eeeecCChHHHHHHhcCcCCccEEEEe-----ecCCcccceeEEEeCC
Q psy13858 2 LSATVPNTLEFADWVGNTKKTKVYVVS-----TLKRPVPLKHFLYVGP 44 (70)
Q Consensus 2 LSATvpN~~e~A~Wi~~~~~~~~~vv~-----t~~RPVPL~~~~~~~~ 44 (70)
++|+.++.++ |+.|+...+.||.++. .+-+||-....+|..+
T Consensus 180 i~a~~a~~~~-a~~L~i~~g~pvl~i~~~~~~~~g~pve~~~~~~~~d 226 (239)
T 3bwg_A 180 LHVGQLNEEE-AEYLGLEAGLPKLYIESIFHLTNGQPFDYSKISYNYE 226 (239)
T ss_dssp EEEEECCHHH-HHHHTSCTTSEEEEEEEEEEETTSCEEEEEEEEECTT
T ss_pred EEEECCCHHH-HhhCCcCCCCcEEEEEEEEECCCCCEEEEEEEEEeCC
Confidence 5677787755 9999998888876643 4567777777777654
No 27
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=34.21 E-value=23 Score=26.08 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=21.0
Q ss_pred CeeeecCCh--HHHHHHhcCcCCccEEEEeecCCc
Q psy13858 1 MLSATVPNT--LEFADWVGNTKKTKVYVVSTLKRP 33 (70)
Q Consensus 1 ~LSATvpN~--~e~A~Wi~~~~~~~~~vv~t~~RP 33 (70)
+||||.++. .++.+|++... +...+....||
T Consensus 179 ~lSAT~~~~~~~~i~~~l~~~~--~~~~~~~~~r~ 211 (523)
T 1oyw_A 179 ALTATADDTTRQDIVRLLGLND--PLIQISSFDRP 211 (523)
T ss_dssp EEESCCCHHHHHHHHHHHTCCS--CEEEECCCCCT
T ss_pred EEeCCCCHHHHHHHHHHhCCCC--CeEEeCCCCCC
Confidence 489999887 67999997632 33444444554
No 28
>3hfi_A Putative regulator; structural geonomics, PSI, MCSG, structural genom protein structure initiative, midwest center for structural genomics; 2.20A {Escherichia coli O6}
Probab=33.01 E-value=82 Score=19.01 Aligned_cols=42 Identities=12% Similarity=0.176 Sum_probs=29.2
Q ss_pred eeeecCChHHHHHHhcCcCCccEEEEe-----ecCCcccceeEEEeCC
Q psy13858 2 LSATVPNTLEFADWVGNTKKTKVYVVS-----TLKRPVPLKHFLYVGP 44 (70)
Q Consensus 2 LSATvpN~~e~A~Wi~~~~~~~~~vv~-----t~~RPVPL~~~~~~~~ 44 (70)
++|..++.+ .|+.|+...+.|+.++. .+-|||-....+|..+
T Consensus 110 i~a~~a~~~-~a~~L~i~~g~pvl~i~r~~~~~~g~pve~~~~~~~~d 156 (170)
T 3hfi_A 110 YAARLIGNE-RGHFLDISEDAPVLHLEQLVFFSRELPVEFGNVWLKGN 156 (170)
T ss_dssp EEEEECCHH-HHHHHCCCTTCEEEEEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEcCCHH-HHHhcCCCCCCcEEEEEEEEECCCCceEEEEEEEEECc
Confidence 567777665 59999999888875433 3567776666666654
No 29
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=32.87 E-value=24 Score=22.59 Aligned_cols=18 Identities=33% Similarity=0.272 Sum_probs=12.1
Q ss_pred CeeeecCCh-HHHHHHhcC
Q psy13858 1 MLSATVPNT-LEFADWVGN 18 (70)
Q Consensus 1 ~LSATvpN~-~e~A~Wi~~ 18 (70)
+||||+++. +++++.+-.
T Consensus 214 ~~SAT~~~~~~~~~~~~l~ 232 (253)
T 1wrb_A 214 MFSATFPKEIQKLAADFLY 232 (253)
T ss_dssp EEESSCCHHHHHHHHHHCS
T ss_pred EEEEeCCHHHHHHHHHHcC
Confidence 589999763 556665543
No 30
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=31.72 E-value=20 Score=23.00 Aligned_cols=17 Identities=41% Similarity=0.501 Sum_probs=11.3
Q ss_pred CeeeecCC-hHHHHHHhc
Q psy13858 1 MLSATVPN-TLEFADWVG 17 (70)
Q Consensus 1 ~LSATvpN-~~e~A~Wi~ 17 (70)
+||||+|+ ..+++..+-
T Consensus 209 ~~SAT~~~~~~~~~~~~l 226 (237)
T 3bor_A 209 LLSATMPTDVLEVTKKFM 226 (237)
T ss_dssp EECSSCCHHHHHHHHHHC
T ss_pred EEEEecCHHHHHHHHHHC
Confidence 58999975 455665543
No 31
>2ooi_A SA0254 protein; staphylocococcus aureus, structural genomics, PSI-2, MCSG, P structure initiative; 2.60A {Staphylococcus aureus subsp} SCOP: d.190.1.2
Probab=31.69 E-value=83 Score=18.66 Aligned_cols=42 Identities=5% Similarity=0.002 Sum_probs=30.5
Q ss_pred eeeecCChHHHHHHhcCcCCccEEEEe-----ecCCcccceeEEEeCC
Q psy13858 2 LSATVPNTLEFADWVGNTKKTKVYVVS-----TLKRPVPLKHFLYVGP 44 (70)
Q Consensus 2 LSATvpN~~e~A~Wi~~~~~~~~~vv~-----t~~RPVPL~~~~~~~~ 44 (70)
++|+.++. +.|+.|+...+.||.++. .+-+||-....+|..+
T Consensus 106 i~a~~a~~-~~a~~L~i~~g~pvl~i~r~~~~~~g~pvey~~~~~~~d 152 (162)
T 2ooi_A 106 FNVDKLTS-SEASLLQLSTGEPCLRYHQTFYTMTGKPFDSSDIVFHYR 152 (162)
T ss_dssp EEEEECCH-HHHHHTTCCTTCEEEEEEEEEEETTSCEEEEEEEEEETT
T ss_pred EEEEcCCH-HHHhhcCCCCCCcEEEEEEEEECCCCCEEEEEEEEEEcc
Confidence 46777765 678999999899976653 3567777777777654
No 32
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=31.48 E-value=45 Score=25.17 Aligned_cols=39 Identities=15% Similarity=0.013 Sum_probs=24.4
Q ss_pred CeeeecCCh--HHHHHHhcCcCCccEEEEeecCCcccceeEEEe
Q psy13858 1 MLSATVPNT--LEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYV 42 (70)
Q Consensus 1 ~LSATvpN~--~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~ 42 (70)
+||||.++. .++.++++.. ...++........+...+..
T Consensus 205 ~lSAT~~~~v~~~i~~~l~~~---~~~~~~~~~~r~nl~~~v~~ 245 (591)
T 2v1x_A 205 GLTATATNHVLTDAQKILCIE---KCFTFTASFNRPNLYYEVRQ 245 (591)
T ss_dssp EEESSCCHHHHHHHHHHTTCC---SCEEEECCCCCTTEEEEEEE
T ss_pred EEecCCCHHHHHHHHHHhCCC---CcEEEecCCCCcccEEEEEe
Confidence 489999886 6788898763 23444444444455544443
No 33
>3lhe_A GNTR family transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.62A {Bacillus anthracis} SCOP: d.190.1.0 PDB: 3l5z_A*
Probab=31.39 E-value=81 Score=18.45 Aligned_cols=41 Identities=12% Similarity=0.025 Sum_probs=26.9
Q ss_pred eeeecCChHHHHHHhcCcCCccEEEEe-----ecCCcccceeEEEeC
Q psy13858 2 LSATVPNTLEFADWVGNTKKTKVYVVS-----TLKRPVPLKHFLYVG 43 (70)
Q Consensus 2 LSATvpN~~e~A~Wi~~~~~~~~~vv~-----t~~RPVPL~~~~~~~ 43 (70)
++|..++.+ .|+.|+...+.|+..+. .+-|||-....+|..
T Consensus 94 i~a~~a~~~-~a~~L~i~~g~pvl~i~r~~~~~~g~pve~~~~~~~~ 139 (143)
T 3lhe_A 94 VKGIRPDDK-EKQFMNLTNQDFLMRVEQVAYLTDGRTFEYSYADHLP 139 (143)
T ss_dssp EEEECCCHH-HHHHHTCCTTCCEEEEEEEEEETTSCEEEEEEEEECG
T ss_pred EEEECCCHH-HHHhcCCCCCCeEEEEEEEEECCCCCEEEEEEEEEch
Confidence 577777754 59999998888866543 245555555555543
No 34
>2pkh_A Histidine utilization repressor; APC84836, pseudomonas syrin tomato STR. DC3000, structural genomics, PSI-2, protein STR initiative; 1.95A {Pseudomonas syringae PV} SCOP: d.190.1.2
Probab=31.37 E-value=79 Score=18.33 Aligned_cols=41 Identities=10% Similarity=0.212 Sum_probs=28.6
Q ss_pred eeeecCChHHHHHHhcCcCCccEEEEe----ecCCcccceeEEEeC
Q psy13858 2 LSATVPNTLEFADWVGNTKKTKVYVVS----TLKRPVPLKHFLYVG 43 (70)
Q Consensus 2 LSATvpN~~e~A~Wi~~~~~~~~~vv~----t~~RPVPL~~~~~~~ 43 (70)
++|+.++. +.|+.|+...+.|+..+. .+-+||-....+|..
T Consensus 93 i~a~~a~~-~~a~~L~i~~g~p~l~i~r~~~~~~~pvey~~~~~~~ 137 (148)
T 2pkh_A 93 VEAILAEA-DECKLLQIDAGEPCLLIRRRTWSGRQPVTAARLIHPG 137 (148)
T ss_dssp EEEECCCH-HHHHHHTCCTTSCEEEEEEEEEETTEEEEEEEEEEEG
T ss_pred EEEecCCH-HHHHhcCCCCCCeEEEEEEEEEECCcCEEEEEEEEeC
Confidence 46777765 678999999898876552 356666655666654
No 35
>2fa1_A Probable transcriptional regulator PHNF; PNHF, APC5558, effector binding DO PSI, protein structure initiative, MCSG; HET: BDF; 1.70A {Escherichia coli} SCOP: d.190.1.2
Probab=30.49 E-value=86 Score=18.44 Aligned_cols=42 Identities=10% Similarity=-0.018 Sum_probs=30.6
Q ss_pred eeeecCChHHHHHHhcCcCCccEEEEe-----ecCCcc-cceeEEEeCC
Q psy13858 2 LSATVPNTLEFADWVGNTKKTKVYVVS-----TLKRPV-PLKHFLYVGP 44 (70)
Q Consensus 2 LSATvpN~~e~A~Wi~~~~~~~~~vv~-----t~~RPV-PL~~~~~~~~ 44 (70)
++|+.++. +.|+.|+...+.|+..+. .+-+|| -....+|..+
T Consensus 105 i~a~~a~~-~~a~~L~i~~g~pvl~i~r~~~~~~g~~v~e~~~~~~~~d 152 (160)
T 2fa1_A 105 ISARRAQA-KECQRLEIPNMSPLLCVRTLNHRDGESSPAEYSVSLTRAD 152 (160)
T ss_dssp EEEEECCT-HHHHHHTCCTTCEEEEEEEEEEETTCSSCSEEEEEEEETT
T ss_pred EEEecCCH-HHHHhcCCCCCCCEEEEEEEEECCCCcEeEEEEEEEEecc
Confidence 56777776 578999999999976653 456777 7777777653
No 36
>3oln_A E3 ubiquitin-protein ligase UHRF2; DNA-binding, metal-binding, nucleus, phosphorylation transcription, transcription regulation; 2.30A {Homo sapiens} SCOP: b.122.1.12
Probab=29.62 E-value=17 Score=25.46 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=21.9
Q ss_pred CCccEEEEeecCCc-----ccceeEEEeCCcccCCceEEeec
Q psy13858 20 KKTKVYVVSTLKRP-----VPLKHFLYVGPVLEKNQLFLIRE 56 (70)
Q Consensus 20 ~~~~~~vv~t~~RP-----VPL~~~~~~~~~~~~~~l~~~~~ 56 (70)
++.|++||.....+ .|-+-|.| |+|+.|.+
T Consensus 141 ~g~PVRVIRg~k~~k~s~yaP~~gyrY-------DGLY~V~~ 175 (231)
T 3oln_A 141 AGKPVRVIRSFKGRKISKYAPEEGNRY-------DGIYKVVK 175 (231)
T ss_dssp GSCCEEEEEEGGGTTTCTTSCSSSEEE-------EEEEEEEE
T ss_pred cCCceEEEeccccCcCCCccCCCCeEe-------CeEEEEEE
Confidence 46899999986642 35566666 78999887
No 37
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=27.95 E-value=17 Score=20.91 Aligned_cols=17 Identities=12% Similarity=0.116 Sum_probs=14.3
Q ss_pred eeeecCChHHHHHHhcC
Q psy13858 2 LSATVPNTLEFADWVGN 18 (70)
Q Consensus 2 LSATvpN~~e~A~Wi~~ 18 (70)
|-||=.|.+.-+|||-.
T Consensus 40 LKat~~NvErAaDWLFS 56 (63)
T 1wgn_A 40 MKKKGENIEQILDYLFA 56 (63)
T ss_dssp HHHHCSCHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHh
Confidence 56788999999999954
No 38
>3ddv_A Transcriptional regulator (GNTR family); structure genomics, MCSG, structural genomics, protein structure initiative; 2.65A {Enterococcus faecalis} SCOP: d.190.1.2
Probab=27.12 E-value=99 Score=18.10 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=28.7
Q ss_pred eeeecCChHHHHHHhcCcCCccEEEEe-----ecCCcccceeEEEeC
Q psy13858 2 LSATVPNTLEFADWVGNTKKTKVYVVS-----TLKRPVPLKHFLYVG 43 (70)
Q Consensus 2 LSATvpN~~e~A~Wi~~~~~~~~~vv~-----t~~RPVPL~~~~~~~ 43 (70)
++|+.++. +.|+.|+...+.|+..+. .+-|||-....+|..
T Consensus 91 i~a~~a~~-~~a~~L~i~~g~pvl~i~r~~~~~~g~pve~~~~~~~~ 136 (145)
T 3ddv_A 91 ISAVQASE-QIAEYLEIKRGDAILRVRQVSYFENGLPFEYVRTQYAG 136 (145)
T ss_dssp EEEEECCH-HHHHHTTSCTTCEEEEEEEEEECTTSCEEEEEEEEESC
T ss_pred EEEEeCCH-HHHHhcCCCCCCEEEEEEEEEECCCCCEEEEEEEEEEc
Confidence 57777775 579999999888875443 345666666666654
No 39
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=26.50 E-value=15 Score=26.57 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=14.3
Q ss_pred CeeeecCCh-HHHHHHhcC
Q psy13858 1 MLSATVPNT-LEFADWVGN 18 (70)
Q Consensus 1 ~LSATvpN~-~e~A~Wi~~ 18 (70)
+||||+++. .+++.++..
T Consensus 269 ~~SAT~~~~v~~~~~~~~~ 287 (563)
T 3i5x_A 269 LFSATLDDKVQKLANNIMN 287 (563)
T ss_dssp EEESSCCTHHHHHTTTTCC
T ss_pred EEEccCCHHHHHHHHHhcC
Confidence 589999995 778777765
No 40
>3cnv_A Putative GNTR-family transcriptional regulator; structural genomics, bordet bronchiseptica, PSI-2, protein structure initiative; HET: MSE FLC; 2.00A {Bordetella bronchiseptica RB50} SCOP: d.190.1.2
Probab=26.38 E-value=81 Score=18.53 Aligned_cols=41 Identities=24% Similarity=0.335 Sum_probs=28.5
Q ss_pred eeeecCChHHHHHHhcCcCCccEEEEe-----ecCCcccceeEEEeC
Q psy13858 2 LSATVPNTLEFADWVGNTKKTKVYVVS-----TLKRPVPLKHFLYVG 43 (70)
Q Consensus 2 LSATvpN~~e~A~Wi~~~~~~~~~vv~-----t~~RPVPL~~~~~~~ 43 (70)
++|+.++. +.|+.|+...+.||..+. .+-+||-....+|..
T Consensus 107 i~a~~a~~-~~a~~L~i~~g~p~l~i~r~~~~~~g~pve~~~~~~~~ 152 (162)
T 3cnv_A 107 LRAVAASP-EIAPLLGVEPGRPLLQVDRISYTYGDRPMEVRRGLYLT 152 (162)
T ss_dssp EEEEECCT-TTHHHHTCCTTCEEEEEEEEEEETTTEEEEEEEEEECC
T ss_pred EEEEcCCH-HHHHhcCCCCCCcEEEEEEEEECCCCCEEEEEEEEEcC
Confidence 46777765 578999998888876553 345766666666654
No 41
>3q0b_X Histone-lysine N-methyltransferase, H3 lysine-9 S SUVH5; SRA, fully methylated CG, SUVH5, 5MC binding protein, fully methylated CG duplex DNA; HET: DNA 5CM; 2.20A {Arabidopsis thaliana} PDB: 3q0c_X* 3q0d_X* 3q0f_X*
Probab=25.77 E-value=53 Score=21.50 Aligned_cols=33 Identities=33% Similarity=0.594 Sum_probs=20.5
Q ss_pred cCcCCccEEEEeecCC-----cccceeEEEeCCcccCCceEEeec
Q psy13858 17 GNTKKTKVYVVSTLKR-----PVPLKHFLYVGPVLEKNQLFLIRE 56 (70)
Q Consensus 17 ~~~~~~~~~vv~t~~R-----PVPL~~~~~~~~~~~~~~l~~~~~ 56 (70)
+...+.|++||....- --|-+-|.| |+|+.|.+
T Consensus 98 S~~~~~pVRViRg~k~~~~~~~~p~~gyrY-------DGLY~V~~ 135 (167)
T 3q0b_X 98 SINKKNPVRVIRGIKNTTLQSSVVAKNYVY-------DGLYLVEE 135 (167)
T ss_dssp HHHHCCCEEEEEECC----------CCEEE-------EEEEEEEE
T ss_pred HHHcCCcEEEEEeecccccCCCCCCccEEE-------CeEEEEee
Confidence 3445789999998543 235555555 78998887
No 42
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=25.47 E-value=27 Score=27.17 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=24.6
Q ss_pred CeeeecCChHHHHHHhcCcCCccEEEEeecCCccccee
Q psy13858 1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKH 38 (70)
Q Consensus 1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~ 38 (70)
++|||+++..+++.+.+. .+ .+.+..|++|++.
T Consensus 276 ~~SAT~~~i~~l~~~~~~----~~-~v~~~~r~~~l~~ 308 (677)
T 3rc3_A 276 GEPAAIDLVMELMYTTGE----EV-EVRDYKRLTPISV 308 (677)
T ss_dssp ECGGGHHHHHHHHHHHTC----CE-EEEECCCSSCEEE
T ss_pred eccchHHHHHHHHHhcCC----ce-EEEEeeecchHHH
Confidence 479998888888888755 33 3466789999874
No 43
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=24.81 E-value=12 Score=24.64 Aligned_cols=11 Identities=18% Similarity=0.141 Sum_probs=9.1
Q ss_pred CeeeecCChHH
Q psy13858 1 MLSATVPNTLE 11 (70)
Q Consensus 1 ~LSATvpN~~e 11 (70)
+||||.+|..+
T Consensus 257 ~lSATp~~~~~ 267 (282)
T 1rif_A 257 GLSGSLRDGKA 267 (282)
T ss_dssp EECSSCCTTST
T ss_pred EEeCCCCCcch
Confidence 58999998765
No 44
>3fde_A E3 ubiquitin-protein ligase UHRF1; SRA domain, base flipping, DNA CPG methylation, cell cycle, developmental protein, DNA damage; HET: 5CM; 1.41A {Mus musculus} SCOP: b.122.1.12 PDB: 2zo0_B* 2zo2_B* 3f8i_A* 2zo1_B* 3f8j_B* 2zkd_A* 2zke_A* 2zkf_A* 2zkg_A 3dwh_A 3bi7_A 3clz_A*
Probab=23.43 E-value=68 Score=22.06 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=21.0
Q ss_pred CCccEEEEeecCCc-----ccceeEEEeCCcccCCceEEeec
Q psy13858 20 KKTKVYVVSTLKRP-----VPLKHFLYVGPVLEKNQLFLIRE 56 (70)
Q Consensus 20 ~~~~~~vv~t~~RP-----VPL~~~~~~~~~~~~~~l~~~~~ 56 (70)
.+.|++||.....+ -|-+-|.| |+|+.|.+
T Consensus 117 ~g~PVRVIRg~k~~k~s~yaP~~gyrY-------DGLY~V~~ 151 (212)
T 3fde_A 117 QGKPVRVVRNMKGGKHSKYAPAEGNRY-------DGIYKVVK 151 (212)
T ss_dssp GSCCEEEEEESCSSTTCSSSCSSSEEE-------EEEEEEEE
T ss_pred cCCcEEEEcccCcCCCCccCCCCCeEe-------CeEEEEEE
Confidence 46799999987642 24444555 78998887
No 45
>2exn_A Hypothetical protein BOR11; beta barrel containing fold, autostructure, autoassign, structure, structural genomics, PSI; NMR {Bordetella bronchiseptica} SCOP: b.165.1.1
Probab=22.76 E-value=43 Score=20.66 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=17.3
Q ss_pred hHHHHHHhcCcCCccEEEEee
Q psy13858 9 TLEFADWVGNTKKTKVYVVST 29 (70)
Q Consensus 9 ~~e~A~Wi~~~~~~~~~vv~t 29 (70)
.+++++|++..=+++|.++..
T Consensus 97 g~~~~~W~S~~Lg~p~rLv~~ 117 (136)
T 2exn_A 97 GELAAAWISNHAGVPCRILKV 117 (136)
T ss_dssp CHHHHHHHHHHTCSSEEEEEE
T ss_pred cHHHHHHHHHHhCCCeEEEEc
Confidence 468999999988888888864
No 46
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=22.69 E-value=1.7e+02 Score=19.20 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=30.4
Q ss_pred eeeecCChHHHHHHhcCcCCccEEEEe-----ecCCcccceeEEEeCC
Q psy13858 2 LSATVPNTLEFADWVGNTKKTKVYVVS-----TLKRPVPLKHFLYVGP 44 (70)
Q Consensus 2 LSATvpN~~e~A~Wi~~~~~~~~~vv~-----t~~RPVPL~~~~~~~~ 44 (70)
++|+.++. +.|+.|+...+.|+.++. .+-|||-....+|..+
T Consensus 185 i~a~~a~~-~~a~~L~i~~g~pvl~i~r~~~~~~g~pve~~~~~~~~d 231 (243)
T 2wv0_A 185 LEPSAATT-EEANILGIQKGAPVLLIKRTTYLQNGTAFEHAKSVYRGD 231 (243)
T ss_dssp EEEEECCH-HHHHHHTSCTTCEEEEEEEEEEETTSCEEEEEEEEEETT
T ss_pred EEEEeCCH-HHHhhCCcCCCCcEEEEEEEEECCCCCEEEEEEEEEECc
Confidence 56777776 568999999898876553 4567777777777654
No 47
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=22.03 E-value=34 Score=24.78 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=14.2
Q ss_pred CeeeecCC-hHHHHHHhcC
Q psy13858 1 MLSATVPN-TLEFADWVGN 18 (70)
Q Consensus 1 ~LSATvpN-~~e~A~Wi~~ 18 (70)
+||||+++ .++++.++..
T Consensus 296 ~lSAT~~~~~~~~~~~~~~ 314 (508)
T 3fho_A 296 LFSATFSERVEKYAERFAP 314 (508)
T ss_dssp EEESCCSTHHHHHHHHHST
T ss_pred EEeCCCCHHHHHHHHHhcC
Confidence 58999998 6677877765
No 48
>2pb7_A E3 ubiquitin-protein ligase UHRF1; beta barrel, NEW fold; 1.90A {Homo sapiens} SCOP: b.122.1.12
Probab=21.72 E-value=60 Score=22.78 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=21.0
Q ss_pred CCccEEEEeecCCc-----ccceeEEEeCCcccCCceEEeecC
Q psy13858 20 KKTKVYVVSTLKRP-----VPLKHFLYVGPVLEKNQLFLIREA 57 (70)
Q Consensus 20 ~~~~~~vv~t~~RP-----VPL~~~~~~~~~~~~~~l~~~~~~ 57 (70)
.+.|++||....-+ .|-+-|.| |+|+.|.+-
T Consensus 125 ~g~PVRVIRg~k~~k~s~yaP~~GyrY-------DGLY~V~~~ 160 (239)
T 2pb7_A 125 SGKPVRVVRNVKGGKNSKYAPAEGNRY-------DGIYKVVKY 160 (239)
T ss_dssp GSCCEEEEEEGGGGGTCTTSCSSSEEE-------EEEEEEEEE
T ss_pred cCCceEEEcccccCcCCcccCCceEEe-------CCeEEEEEE
Confidence 56899999975432 24444555 789988874
No 49
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=20.38 E-value=29 Score=23.05 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=13.0
Q ss_pred CeeeecCCh-HHHHHHhcC
Q psy13858 1 MLSATVPNT-LEFADWVGN 18 (70)
Q Consensus 1 ~LSATvpN~-~e~A~Wi~~ 18 (70)
+||||+++. .+++.++..
T Consensus 182 ~~SAT~~~~~~~~~~~~~~ 200 (395)
T 3pey_A 182 LFSATFADAVRQYAKKIVP 200 (395)
T ss_dssp EEESCCCHHHHHHHHHHSC
T ss_pred EEEecCCHHHHHHHHHhCC
Confidence 589999875 566666654
Done!