RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy13858
         (70 letters)



>gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication,
           recombination, and repair].
          Length = 1041

 Score = 67.0 bits (164), Expect = 5e-15
 Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 5/63 (7%)

Query: 1   MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGE 60
            LSATVPN  EFA+W+       ++VVST  RPVPL+HF+YVG       LF + + + +
Sbjct: 265 FLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVG-----KGLFDLVDEKKK 319

Query: 61  FLT 63
           F  
Sbjct: 320 FNA 322


>gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function
           prediction only].
          Length = 766

 Score = 37.7 bits (88), Expect = 9e-05
 Identities = 17/56 (30%), Positives = 22/56 (39%)

Query: 2   LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREA 57
           LSAT+PN  E ADW+        +    L+R VP           +K    LI   
Sbjct: 186 LSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNL 241


>gnl|CDD|100801 PRK01172, PRK01172, ski2-like helicase; Provisional.
          Length = 674

 Score = 35.2 bits (81), Expect = 8e-04
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 11/52 (21%)

Query: 2   LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFL 53
           LSATV N  E A W+  +      + S   RPVPLK    +G +L + +L L
Sbjct: 175 LSATVSNANELAQWLNAS-----LIKSNF-RPVPLK----LG-ILYRKRLIL 215


>gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific
           [General function prediction only].
          Length = 830

 Score = 27.1 bits (60), Expect = 0.69
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 8/67 (11%)

Query: 2   LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPL-KHFLYVGPVLEKNQLFLIREAEGE 60
           LSATV N  E A      KK    +V   +RPVPL +H ++     EK  +   R  + E
Sbjct: 378 LSATVGNPEELA------KKLGAKLVLYDERPVPLERHLVFARNESEKWDIIA-RLVKRE 430

Query: 61  FLTRGDF 67
           F T    
Sbjct: 431 FSTESSK 437


>gnl|CDD|235032 PRK02362, PRK02362, ski2-like helicase; Provisional.
          Length = 737

 Score = 26.5 bits (59), Expect = 0.97
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 6/36 (16%)

Query: 2   LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLK 37
           LSAT+ N  E ADW+         +V +  RP+ L+
Sbjct: 177 LSATIGNADELADWLDAE------LVDSEWRPIDLR 206


>gnl|CDD|212100 cd10788, YdjC_like, YdjC-family proteins.  YdjC-family proteins are
           widely distributed, from human to bacteria. It is
           represented by an uncharacterised protein YdjC (also
           known as ChbG), encoded by the chb
           (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel
           operon in Escherichia coli, which encodes enzymes
           involved in growth on an N,N'-diacetylchitobiose carbon
           source. This subfamily also includes hopanoid
           biosynthesis associated proteins HpnK and many
           uncharacterized YdjC homologs. Although the exact
           molecular function of the YdjC-family proteins remains
           unclear, it has been suggested that they play a role in
           the cleavage of cellobiosephosphate.
          Length = 243

 Score = 26.6 bits (59), Expect = 1.0
 Identities = 12/67 (17%), Positives = 18/67 (26%), Gaps = 4/67 (5%)

Query: 1   MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLI----RE 56
            L   +       D   +    +  ++            L V P L  +   L     RE
Sbjct: 175 FLKLKIFTHDYSLDLYVDGTIDQGPILRLPDLVKEGVAELMVHPGLPDDIRALGSDLDRE 234

Query: 57  AEGEFLT 63
            E E L 
Sbjct: 235 KELEALL 241


>gnl|CDD|234679 PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed.
          Length = 548

 Score = 24.4 bits (54), Expect = 6.2
 Identities = 6/10 (60%), Positives = 6/10 (60%)

Query: 8   NTLEFADWVG 17
           N   F DWVG
Sbjct: 258 NMFGFWDWVG 267


>gnl|CDD|222681 pfam14324, PINIT, PINIT domain.  The PINIT domain is a protein
           domain that is found in PIAS proteins. The PINIT domain
           is about 180 amino acids in length.
          Length = 144

 Score = 24.1 bits (53), Expect = 7.4
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 2   LSATVPNTLEFADWVGNTKKTKVYV 26
           LSATVPNT+E   +    K   +YV
Sbjct: 117 LSATVPNTIEIT-YANTGKSYLLYV 140


>gnl|CDD|99987 cd03817, GT1_UGDG_like, This family is most closely related to the
           GT1 family of glycosyltransferases.
           UDP-glucose-diacylglycerol glucosyltransferase (UGDG;
           also known as 1,2-diacylglycerol 3-glucosyltransferase)
           catalyzes the transfer of glucose from UDP-glucose to
           1,2-diacylglycerol forming
           3-D-glucosyl-1,2-diacylglycerol.
          Length = 374

 Score = 23.7 bits (52), Expect = 9.1
 Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)

Query: 37  KHFLYVGPVL-EKNQLFLIR 55
              LYVG +  EKN  FLIR
Sbjct: 203 PVLLYVGRLAKEKNIDFLIR 222


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.138    0.425 

Gapped
Lambda     K      H
   0.267   0.0778    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,517,073
Number of extensions: 255123
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 10
Length of query: 70
Length of database: 10,937,602
Length adjustment: 40
Effective length of query: 30
Effective length of database: 9,163,442
Effective search space: 274903260
Effective search space used: 274903260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)