RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13858
         (70 letters)



>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
           [TaxId: 2234]}
          Length = 202

 Score = 32.2 bits (72), Expect = 0.002
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 1   MLSATVPNTLEFADWVG 17
            LSAT PN  E A+W+ 
Sbjct: 177 GLSATAPNVTEIAEWLD 193


>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
          {Thermus thermophilus [TaxId: 274]}
          Length = 239

 Score = 28.0 bits (61), Expect = 0.080
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 5/41 (12%)

Query: 7  PNTLEFADWVGN---TKKTKVYVVSTLKRPVPLKHFLYVGP 44
          P TL+  +++G     +K +VY+ +   R  PL+H L  GP
Sbjct: 5  PKTLD--EYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGP 43


>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
          {Thermotoga maritima [TaxId: 2336]}
          Length = 238

 Score = 24.9 bits (53), Expect = 0.89
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 5/41 (12%)

Query: 7  PNTLEFADWVGN---TKKTKVYVVSTLKRPVPLKHFLYVGP 44
          P +L+  +++G     KK  + + +   R   L H L  GP
Sbjct: 5  PKSLD--EFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGP 43


>d1kq6a_ d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 140

 Score = 22.0 bits (46), Expect = 9.1
 Identities = 8/26 (30%), Positives = 16/26 (61%)

Query: 17 GNTKKTKVYVVSTLKRPVPLKHFLYV 42
          G+T    + ++   KR VP +H++Y+
Sbjct: 1  GDTFIRHIALLGFEKRFVPSQHYVYM 26


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.425 

Gapped
Lambda     K      H
   0.267   0.0438    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 254,238
Number of extensions: 8929
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 4
Length of query: 70
Length of database: 2,407,596
Length adjustment: 38
Effective length of query: 32
Effective length of database: 1,885,856
Effective search space: 60347392
Effective search space used: 60347392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.6 bits)