BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13859
(108 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3
Length = 1246
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 39/82 (47%), Positives = 55/82 (67%), Gaps = 12/82 (14%)
Query: 26 LNFGLVQVVYEWAM------------QKEGIIVRCIQQLSELLRSIKDGAKIFGERDLPL 73
LNFGLV+VVYEWA EG++VRCIQ+L+E+ RS++ A++ GE L
Sbjct: 1165 LNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCIQRLAEMCRSLRGAARLVGEPVLGA 1224
Query: 74 KMDQAIQVIKRDIVFAPSLWTK 95
KM+ A +++RDIVFA SL+T+
Sbjct: 1225 KMETAATLLRRDIVFAASLYTQ 1246
>sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SKI2 PE=1 SV=2
Length = 1287
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 12/86 (13%)
Query: 20 SEEADNLNFGLVQVVYEWAM------------QKEGIIVRCIQQLSELLRSIKDGAKIFG 67
+E D F ++ VVYEWA + EG +VR I L E+ R +K + I G
Sbjct: 1201 AEFLDRKRFAMMNVVYEWARGLSFKEIMEMSPEAEGTVVRVITWLDEICREVKTASIIIG 1260
Query: 68 ERDLPLKMDQAIQVIKRDIVFAPSLW 93
L +KM +A ++IKRDIVFA SL+
Sbjct: 1261 NSTLHMKMSRAQELIKRDIVFAASLY 1286
>sp|O59801|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1
Length = 1213
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 12/78 (15%)
Query: 28 FGLVQVVYEWAMQK------------EGIIVRCIQQLSELLRSIKDGAKIFGERDLPLKM 75
FGL++V YEWA EG IVR I +L E+LR + A++ G+ + KM
Sbjct: 1135 FGLMEVCYEWARGMSFNRITDLTDVLEGSIVRTIIRLDEVLRECRGAARVVGDSSMYTKM 1194
Query: 76 DQAIQVIKRDIVFAPSLW 93
++ +I+R+IVF PSL+
Sbjct: 1195 EECQNLIRRNIVFCPSLY 1212
>sp|Q9CZU3|SK2L2_MOUSE Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2
PE=2 SV=1
Length = 1040
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 41/76 (53%), Gaps = 12/76 (15%)
Query: 30 LVQVVYEWAMQK------------EGIIVRCIQQLSELLRSIKDGAKIFGERDLPLKMDQ 77
L+ VVY WA EG I+RC+++L ELLR + AK G +L K +
Sbjct: 964 LMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAE 1023
Query: 78 AIQVIKRDIVFAPSLW 93
I IKRDIVFA SL+
Sbjct: 1024 GITKIKRDIVFAASLY 1039
>sp|P42285|SK2L2_HUMAN Superkiller viralicidic activity 2-like 2 OS=Homo sapiens GN=SKIV2L2
PE=1 SV=3
Length = 1042
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 41/76 (53%), Gaps = 12/76 (15%)
Query: 30 LVQVVYEWAMQK------------EGIIVRCIQQLSELLRSIKDGAKIFGERDLPLKMDQ 77
L+ VVY WA EG I+RC+++L ELLR + AK G +L K +
Sbjct: 966 LMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAE 1025
Query: 78 AIQVIKRDIVFAPSLW 93
I IKRDIVFA SL+
Sbjct: 1026 GITKIKRDIVFAASLY 1041
>sp|O14232|MTR4_SCHPO ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mtr4 PE=1 SV=1
Length = 1117
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 21 EEADNLNFGLVQVVYEWAMQK------------EGIIVRCIQQLSELLRSIKDGAKIFGE 68
E ++ L++VVY WA EG ++R ++L EL+R + D AK+ G
Sbjct: 1032 EYVNSFKPSLMEVVYAWAHGASFAQICKMTDVYEGSLIRMFRRLEELIRQMVDAAKVIGN 1091
Query: 69 RDLPLKMDQAIQVIKRDIVFAPSLW 93
L KM+ I I RDIVF+ SL+
Sbjct: 1092 TSLQQKMEDTIACIHRDIVFSASLY 1116
>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3 SV=1
Length = 1026
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 15/104 (14%)
Query: 2 NIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQK------------EGIIVRCI 49
N+ S E K V DK + N GL+ VVY+W EG I+R +
Sbjct: 925 NVAKVSNECKMEVMEDKY---VSSFNPGLMDVVYQWVNGATFSEIVKTTDVFEGSIIRTL 981
Query: 50 QQLSELLRSIKDGAKIFGERDLPLKMDQAIQVIKRDIVFAPSLW 93
++L E+LR + + AK ++L K + A + +KRDIVFA SL+
Sbjct: 982 RRLEEVLREMINAAKALANKELEQKFEDARKNLKRDIVFAASLY 1025
>sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1
Length = 1073
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 12/76 (15%)
Query: 30 LVQVVYEWAMQK------------EGIIVRCIQQLSELLRSIKDGAKIFGERDLPLKMDQ 77
L++VVYEW EG ++R ++L EL++ + D A G L KM+
Sbjct: 997 LMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEA 1056
Query: 78 AIQVIKRDIVFAPSLW 93
+++I RDIV A SL+
Sbjct: 1057 VLKLIHRDIVSAGSLY 1072
>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1
Length = 1030
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 42 EGIIVRCIQQLSELLRSIKDGAKIFGERDLPLKMDQAIQVIKRDIVFAPSLW 93
EG IVR ++L ELL+ ++ A + G +L K Q + RDI+F+ SL+
Sbjct: 978 EGSIVRTFRRLDELLKQLEHAAIVLGNNELKEKSVLTEQKLHRDIIFSASLY 1029
>sp|P15320|HLYA_SERMA Hemolysin OS=Serratia marcescens GN=shlA PE=1 SV=1
Length = 1608
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 14 VERDKSSEEADNLNFGLVQVVYEWAMQKEGIIVRCIQQLSELLRSIK-------DGAKIF 66
VE+DKSSE N W+ E ++ + SE ++K GAK+
Sbjct: 448 VEKDKSSERGYQRNHTSSLRTGRWSNSDESESLKASELRSEGELTLKAGRNVSTQGAKVH 507
Query: 67 GERDLPLKMDQAIQV 81
+RDL + D IQV
Sbjct: 508 AQRDLTIDADNQIQV 522
>sp|Q026Q7|PURA_SOLUE Adenylosuccinate synthetase OS=Solibacter usitatus (strain
Ellin6076) GN=purA PE=3 SV=1
Length = 434
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 23 ADNLNFGLVQVVYEWAMQKEGIIVRCIQQLSEL-LRSIKDGAKIFGERDLPLKMDQAI 79
AD L+ + Y M+++ +I + + SEL LR+I+D + F ER P+ D ++
Sbjct: 149 ADLLDTEFFRAQYASVMEEKVLIAKALGIYSELDLRAIRDEYEAFAERIRPMVCDTSV 206
>sp|A8ZWU1|APT_DESOH Adenine phosphoribosyltransferase OS=Desulfococcus oleovorans
(strain DSM 6200 / Hxd3) GN=apt PE=3 SV=1
Length = 173
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 31 VQVVYEWAMQKEGIIVRCIQQLSELLRSIKDGAKIFGERDLPLKMDQAIQVIKRDIVFAP 90
++ + W + EG++ R I L + + K+ F +R +K+D+ + + R ++F
Sbjct: 7 IRTLPNWPI--EGVMFRDITTLLQDPAAFKEAINRFYDRYRTMKIDKIVGIDARGLIFGA 64
Query: 91 SLWTKLLVGGQP 102
L KL VG P
Sbjct: 65 PLAYKLEVGFVP 76
>sp|B2T600|RSGA_BURPP Putative ribosome biogenesis GTPase RsgA OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=rsgA PE=3 SV=1
Length = 316
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 32 QVVYEWAMQKEGIIVRCIQQLSELLRSIKDGAKIFGERDLPLKMDQAIQVIKRDIVFAPS 91
+VVYE A +G+IV ++ + L RS + +K+F +DQ + V+ + F+
Sbjct: 56 RVVYELASADQGVIVEIGERRNLLYRSDQYKSKLFAA-----NLDQLLVVLATEPHFSED 110
Query: 92 LWTKLLVGGQ 101
L + LV +
Sbjct: 111 LLGRALVAAE 120
>sp|Q04833|LRP_CAEEL Low-density lipoprotein receptor-related protein OS=Caenorhabditis
elegans GN=lrp-1 PE=1 SV=1
Length = 4753
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 6 ESIEKKHGVERDKS-SEEADNLNFGLVQVVYEWAMQKEGIIVRCIQQLSELLRSIKDGAK 64
E+IE R K SE DN N G + V + I+ +QQ + L+ + G
Sbjct: 4286 ENIENGLVTARKKRMSEPIDNQNTGFIFVCLPDGRYLKKIVAGHLQQPTALITAPSAGRI 4345
Query: 65 IFGERDLPLKMDQA------IQVIKRDIVFAPS 91
+ + L K++ A Q+I +D+VF+P+
Sbjct: 4346 CYSDAGLHAKIECADMDGTHRQIIVKDLVFSPT 4378
>sp|Q8CSG0|ARGB_STAES Acetylglutamate kinase OS=Staphylococcus epidermidis (strain ATCC
12228) GN=argB PE=3 SV=1
Length = 245
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 24 DNLNFGLVQVVYEWAMQKEGIIV--RCIQQLSELL-----RSIK-DGAKIFGERDLPLKM 75
+NLN +Q + W ++ + II+ Q +S LL +IK DG ++ + DLP+
Sbjct: 15 ENLNDAFIQQINAWHLENKKIIIVHGGGQVISNLLTKNNHSTIKIDGMRVTAKNDLPIIY 74
Query: 76 DQAIQVI 82
D I ++
Sbjct: 75 DALINIV 81
>sp|Q5HP23|ARGB_STAEQ Acetylglutamate kinase OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=argB PE=3 SV=1
Length = 245
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 24 DNLNFGLVQVVYEWAMQKEGIIV--RCIQQLSELL-----RSIK-DGAKIFGERDLPLKM 75
+NLN +Q + W ++ + II+ Q +S LL +IK DG ++ + DLP+
Sbjct: 15 ENLNDAFIQQINAWHLENKKIIIVHGGGQVISNLLTKNNHSTIKIDGMRVTAKNDLPIIY 74
Query: 76 DQAIQVI 82
D I ++
Sbjct: 75 DALINIV 81
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,456,332
Number of Sequences: 539616
Number of extensions: 1351043
Number of successful extensions: 3280
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3262
Number of HSP's gapped (non-prelim): 18
length of query: 108
length of database: 191,569,459
effective HSP length: 76
effective length of query: 32
effective length of database: 150,558,643
effective search space: 4817876576
effective search space used: 4817876576
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)