Query psy13859
Match_columns 108
No_of_seqs 103 out of 360
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 22:13:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13859.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13859hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a4z_A Antiviral helicase SKI2 100.0 3.3E-33 1.1E-37 247.4 7.8 94 1-94 891-997 (997)
2 2xgj_A ATP-dependent RNA helic 100.0 8.8E-33 3E-37 245.2 7.1 93 1-94 906-1010(1010)
3 3l9o_A ATP-dependent RNA helic 100.0 1.5E-33 5.1E-38 252.0 0.6 93 1-94 1004-1108(1108)
4 1dj8_A HDEA, protein HNS-depen 74.2 6.2 0.00021 26.0 4.9 66 20-86 19-89 (89)
5 3bbz_A P protein, phosphoprote 68.9 1.8 6.3E-05 26.0 1.2 31 56-88 7-46 (49)
6 3idw_A Actin cytoskeleton-regu 49.0 5.5 0.00019 25.6 0.9 44 4-56 21-65 (72)
7 1vp7_A Exodeoxyribonuclease VI 46.8 22 0.00077 23.8 3.7 36 43-83 30-68 (100)
8 3rfb_A Putative uncharacterize 42.6 15 0.00052 26.2 2.5 43 51-95 15-59 (171)
9 2va8_A SSO2462, SKI2-type heli 40.2 37 0.0013 28.1 4.8 58 30-87 584-653 (715)
10 3clj_A Protein NRD1; CTD-inter 38.3 60 0.0021 23.1 5.1 51 41-91 86-136 (157)
11 3qry_B Putative uncharacterize 37.8 13 0.00045 30.8 1.7 38 45-86 233-270 (426)
12 3myf_A Sensor protein; HPT, hi 35.4 51 0.0018 21.7 4.1 37 50-86 50-86 (119)
13 3c1q_A General secretion pathw 34.2 31 0.001 22.1 2.8 32 61-92 37-68 (123)
14 3iqt_A Signal transduction his 32.7 46 0.0016 22.2 3.5 36 51-86 60-95 (123)
15 2es9_A Putative cytoplasmic pr 31.6 45 0.0015 22.8 3.3 38 2-40 38-80 (115)
16 2whn_A PILC, pilus assembly pr 30.3 33 0.0011 21.6 2.4 31 62-92 39-69 (116)
17 3cqx_C BAG family molecular ch 30.0 41 0.0014 22.2 2.8 20 47-66 68-87 (88)
18 3g8r_A Probable spore coat pol 29.9 38 0.0013 27.1 3.1 44 48-91 241-287 (350)
19 3s2u_A UDP-N-acetylglucosamine 29.4 97 0.0033 23.4 5.3 41 45-85 314-357 (365)
20 3ip0_A 2-amino-4-hydroxy-6-hyd 29.2 16 0.00056 26.0 0.8 35 72-106 15-55 (158)
21 3ksh_A Putative uncharacterize 28.7 26 0.00089 24.6 1.8 42 52-95 15-58 (160)
22 3qbc_A 2-amino-4-hydroxy-6-hyd 27.9 13 0.00044 26.8 0.1 36 71-106 18-59 (161)
23 4a17_Y RPL37A, 60S ribosomal p 27.0 55 0.0019 22.1 3.1 20 44-63 78-97 (103)
24 1yar_O Proteasome activator pr 26.4 91 0.0031 23.6 4.5 26 41-66 69-94 (237)
25 3qt9_A Putative uncharacterize 25.9 27 0.00091 29.0 1.6 35 46-86 236-270 (427)
26 3p2c_A Putative glycosyl hydro 24.8 28 0.00097 29.1 1.6 35 46-86 264-298 (463)
27 2p0v_A Hypothetical protein BT 24.7 29 0.00098 29.2 1.6 35 45-86 281-316 (489)
28 1eci_B Ectatomin; pore-forming 23.9 76 0.0026 17.3 2.7 25 27-51 6-30 (34)
29 2imu_A Structural polyprotein 21.7 35 0.0012 20.0 1.1 10 43-52 4-13 (46)
30 1zv1_A Doublesex protein; UBA 21.6 1.6E+02 0.0053 18.4 4.9 37 26-62 22-58 (65)
31 2qx0_A 7,8-dihydro-6-hydroxyme 21.5 30 0.001 24.7 1.0 35 72-106 16-56 (159)
32 2g5c_A Prephenate dehydrogenas 21.2 91 0.0031 22.3 3.6 40 41-81 237-277 (281)
33 1sy9_B Cyclic-nucleotide-gated 21.2 46 0.0016 17.1 1.4 11 29-39 12-22 (26)
34 2oez_A UPF0289 protein VP2528; 21.1 1.4E+02 0.0048 22.8 4.8 19 46-64 16-34 (247)
35 2l3i_A Aoxki4A, antimicrobial 21.0 50 0.0017 17.4 1.6 13 46-58 15-27 (30)
No 1
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.98 E-value=3.3e-33 Score=247.41 Aligned_cols=94 Identities=37% Similarity=0.604 Sum_probs=89.7
Q ss_pred ChHHHHHHHHHhCCCCCcc-hhhhhhcchhHHHHHHHHhcc------------CCchhHHHHHHHHHHHHHHHHHhhhhC
Q psy13859 1 MNIEVESIEKKHGVERDKS-SEEADNLNFGLVQVVYEWAMQ------------KEGIIVRCIQQLSELLRSIKDGAKIFG 67 (108)
Q Consensus 1 ~a~~Ia~v~~~~~l~~~~~-~~y~~~~~~~LmevVy~Wa~G------------~EGsIVR~irRL~ELlrql~~Aa~~iG 67 (108)
+|++|++++.+||++++.+ ++|+++|+||||+|||+||+| +|||||||||||+||||||++||++||
T Consensus 891 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~Wa~g~~f~~i~~~t~~~eG~~vR~~~rl~e~~~q~~~aa~~~g 970 (997)
T 4a4z_A 891 IYKKMLCVFNTHQIPLTQDEAEFLDRKRFAMMNVVYEWARGLSFKEIMEMSPEAEGTVVRVITWLDEICREVKTASIIIG 970 (997)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHGGGSCTTTTHHHHHHHHHTCCHHHHHHTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCccchhhhccCCChHHHHHHHHHhCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4789999999999998532 499999999999999999999 999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhhcCCccccchhhh
Q psy13859 68 ERDLPLKMDQAIQVIKRDIVFAPSLWT 94 (108)
Q Consensus 68 ~~~L~~k~~~a~~~ikRdIVf~~SLYl 94 (108)
|++|++||++|+++|||||||++||||
T Consensus 971 ~~~l~~k~~~a~~~i~R~iv~~~slyl 997 (997)
T 4a4z_A 971 NSTLHMKMSRAQELIKRDIVFAASLYL 997 (997)
T ss_dssp CHHHHHHHHHHHHHHSCGGGGCCCTTC
T ss_pred CHHHHHHHHHHHHHhcCCeeecccccC
Confidence 999999999999999999999999996
No 2
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.8e-33 Score=245.17 Aligned_cols=93 Identities=31% Similarity=0.544 Sum_probs=89.6
Q ss_pred ChHHHHHHHHHhCCCCCcchhhhhhcchhHHHHHHHHhcc------------CCchhHHHHHHHHHHHHHHHHHhhhhCC
Q psy13859 1 MNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQ------------KEGIIVRCIQQLSELLRSIKDGAKIFGE 68 (108)
Q Consensus 1 ~a~~Ia~v~~~~~l~~~~~~~y~~~~~~~LmevVy~Wa~G------------~EGsIVR~irRL~ELlrql~~Aa~~iG~ 68 (108)
+|++|++++.+||++++++ +|+++|+|+||++||+||+| +||||||+||||+||||||++||++|||
T Consensus 906 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~v~~Wa~g~~~~~i~~~t~~~eG~~vR~~~rl~ell~q~~~a~~~~g~ 984 (1010)
T 2xgj_A 906 IAAKIAKIMKDSKIEVVEK-DYVESFRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGN 984 (1010)
T ss_dssp HHHHHHHHHHHTTCCCCHH-HHHHTSCCTTHHHHHHHTTTCCHHHHTTSCSSCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCCChh-HhcccCChHHHHHHHHHhCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 4789999999999999986 99999999999999999999 9999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhhcCCccccchhhh
Q psy13859 69 RDLPLKMDQAIQVIKRDIVFAPSLWT 94 (108)
Q Consensus 69 ~~L~~k~~~a~~~ikRdIVf~~SLYl 94 (108)
++|.+||++|+++|||||||++||||
T Consensus 985 ~~l~~~~~~a~~~i~R~iv~~~sly~ 1010 (1010)
T 2xgj_A 985 SSLKEKMEAVLKLIHRDIVSAGSLYL 1010 (1010)
T ss_dssp HHHHHHHHHHHHHHSCGGGGCCCC-C
T ss_pred HHHHHHHHHHHHhccCCeEecccccC
Confidence 99999999999999999999999996
No 3
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-33 Score=252.00 Aligned_cols=93 Identities=31% Similarity=0.544 Sum_probs=84.9
Q ss_pred ChHHHHHHHHHhCCCCCcchhhhhhcchhHHHHHHHHhcc------------CCchhHHHHHHHHHHHHHHHHHhhhhCC
Q psy13859 1 MNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQ------------KEGIIVRCIQQLSELLRSIKDGAKIFGE 68 (108)
Q Consensus 1 ~a~~Ia~v~~~~~l~~~~~~~y~~~~~~~LmevVy~Wa~G------------~EGsIVR~irRL~ELlrql~~Aa~~iG~ 68 (108)
+|++|++++.+||++++++ +|+++|+||||+|||+||+| +||+||||||||+||||||++||++|||
T Consensus 1004 ~~~~i~~~~~~~~~~~~~~-~~~~~~~~~l~~~v~~Wa~g~~f~~i~~~t~~~eG~~vR~~~rl~e~l~q~~~aa~~~g~ 1082 (1108)
T 3l9o_A 1004 IAAKIAKIMKDSKIEVVEK-DYVESFRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGN 1082 (1108)
T ss_dssp HHHHHHHHHHHTTCSCHHH-HHHHHHCCSCHHHHHHHHC----CCGGGTC--CHHHHHHHHHHHHHHHSCCCC----CCC
T ss_pred HHHHHHHHHHHhCCCCChH-HhccCCChHHHHHHHHHhCCCCHHHHHhcCCCCchhhhhHHHHHHHHHHHHHHHHhhcCC
Confidence 4789999999999999887 99999999999999999999 9999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhhcCCccccchhhh
Q psy13859 69 RDLPLKMDQAIQVIKRDIVFAPSLWT 94 (108)
Q Consensus 69 ~~L~~k~~~a~~~ikRdIVf~~SLYl 94 (108)
++|++||++|+++|||||||++||||
T Consensus 1083 ~~l~~k~~~a~~~i~r~iv~~~slyl 1108 (1108)
T 3l9o_A 1083 SSLKEKMEAVLKLIHRDIVSAGSLYL 1108 (1108)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCCC-
T ss_pred HHHHHHHHHHHHHhcCCEEeeccccC
Confidence 99999999999999999999999997
No 4
>1dj8_A HDEA, protein HNS-dependent expression A; alpha helical, structural protein; 2.00A {Escherichia coli} SCOP: a.57.1.1 PDB: 1bg8_A
Probab=74.24 E-value=6.2 Score=25.96 Aligned_cols=66 Identities=12% Similarity=0.100 Sum_probs=46.0
Q ss_pred hhhhhhcchhHHHHHHHHhcc----CCc-hhHHHHHHHHHHHHHHHHHhhhhCCCcHHHHHHHHHHhhcCCc
Q psy13859 20 SEEADNLNFGLVQVVYEWAMQ----KEG-IIVRCIQQLSELLRSIKDGAKIFGERDLPLKMDQAIQVIKRDI 86 (108)
Q Consensus 20 ~~y~~~~~~~LmevVy~Wa~G----~EG-sIVR~irRL~ELlrql~~Aa~~iG~~~L~~k~~~a~~~ikRdI 86 (108)
.||+ .+|+..+..|--|+.| +.| +=+=-+.-.+..--++.+.|+-=+...|.+++++....++.++
T Consensus 19 ~eFl-~ld~~~~p~v~~W~~~~~~~~k~~d~vvD~~~~e~v~P~vve~Ckk~P~~sl~~~i~~~~~k~~~~~ 89 (89)
T 1dj8_A 19 EDFL-AVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKKDM 89 (89)
T ss_dssp HHHH-TSCGGGHHHHHHHHHHHHHCSCGGGCCCCHHHHHHHHHHHHHHHHTTTTSBHHHHHHHHHTTSCC--
T ss_pred HHHH-hCChhhhhHHHHHHHhcccCCCCCCceeehhHHHHhhHHHHHHHHhCchhHHHHHHHHHHHHHhhcC
Confidence 3777 6899999999999999 444 2122333344445555566666688999999999998888763
No 5
>3bbz_A P protein, phosphoprotein; molten globule, viral protein, replication; 2.10A {Mumps virus}
Probab=68.90 E-value=1.8 Score=25.98 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=21.9
Q ss_pred HHHHHHHhhhhCCCcHHHHHHHHHHh---------hcCCccc
Q psy13859 56 LRSIKDGAKIFGERDLPLKMDQAIQV---------IKRDIVF 88 (108)
Q Consensus 56 lrql~~Aa~~iG~~~L~~k~~~a~~~---------ikRdIVf 88 (108)
|.||..= -|+||...++|+.-+.. |||||+=
T Consensus 7 l~~l~kd--Ci~np~~r~~Fe~ki~~~~tE~q~k~iKr~IIR 46 (49)
T 3bbz_A 7 ITKMITD--SVANPQMKQAFEQRLAKASTEDALNDIKRDIIR 46 (49)
T ss_dssp HHHHHHH--HCCSHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHH--HcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 4444443 48999999999876654 7777764
No 6
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=49.04 E-value=5.5 Score=25.59 Aligned_cols=44 Identities=16% Similarity=0.314 Sum_probs=26.2
Q ss_pred HHHHHHHHhCCCCCcchhhhhhcchhHHHHHHHHhcc-CCchhHHHHHHHHHHH
Q psy13859 4 EVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQ-KEGIIVRCIQQLSELL 56 (108)
Q Consensus 4 ~Ia~v~~~~~l~~~~~~~y~~~~~~~LmevVy~Wa~G-~EGsIVR~irRL~ELl 56 (108)
+-+..-.+.+++. +-+..++++++. .-| -||+|||.++.++...
T Consensus 21 rYA~~F~~~ri~e----~mL~Dl~~~~Lr-----~LGi~eGDIIrVmk~l~~k~ 65 (72)
T 3idw_A 21 RYTINFDREQLTE----DMMPDINNSMLR-----TLGLREGDIVRVMKHLDKKF 65 (72)
T ss_dssp HHHHHHHHTTCCG----GGGGGCCHHHHH-----HTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCCH----HHHhhCCHHHHH-----HcCCchhhHHHHHHHHHHHh
Confidence 3344444444432 223445555543 235 8999999999998754
No 7
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=46.83 E-value=22 Score=23.84 Aligned_cols=36 Identities=11% Similarity=0.289 Sum_probs=25.4
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhCCCcHHH---HHHHHHHhhc
Q psy13859 43 GIIVRCIQQLSELLRSIKDGAKIFGERDLPL---KMDQAIQVIK 83 (108)
Q Consensus 43 GsIVR~irRL~ELlrql~~Aa~~iG~~~L~~---k~~~a~~~ik 83 (108)
-++=-.+.||++++++|-+ |+-.|.+ .++++.+++|
T Consensus 30 ~sFEeal~eLEeIV~~LE~-----gel~LEesl~lyeeG~~L~k 68 (100)
T 1vp7_A 30 QDFETALAELESLVSAMEN-----GTLPLEQSLSAYRRGVELAR 68 (100)
T ss_dssp CSHHHHHHHHHHHHHHHHT-----TCSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHHHH
Confidence 3566678899999999875 5666654 5566666655
No 8
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=42.61 E-value=15 Score=26.20 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhhhCCCcHHHHHHHHHHhhcCCc--cccchhhhH
Q psy13859 51 QLSELLRSIKDGAKIFGERDLPLKMDQAIQVIKRDI--VFAPSLWTK 95 (108)
Q Consensus 51 RL~ELlrql~~Aa~~iG~~~L~~k~~~a~~~ikRdI--Vf~~SLYl~ 95 (108)
..+.|+.|++.... |.+++...+..+.++++.-+ +.+.|+||-
T Consensus 15 ~~~~ll~~l~~ll~--~~~dl~~~L~nv~~lL~~~l~~~~~~gfYL~ 59 (171)
T 3rfb_A 15 RYQMLNEELSFLLE--GETNVLANLSNASALIKSRFPNTVFAGFYLF 59 (171)
T ss_dssp HHHHHHHHHHHHHT--TCCBHHHHHHHHHHHHHHHCTTEEEEEEEEE
T ss_pred HHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHccCCCEEEEEEE
Confidence 35678888876432 78899999999999988866 678888864
No 9
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=40.18 E-value=37 Score=28.10 Aligned_cols=58 Identities=10% Similarity=0.121 Sum_probs=48.2
Q ss_pred HHHHHHHHhcc------------CCchhHHHHHHHHHHHHHHHHHhhhhCCCcHHHHHHHHHHhhcCCcc
Q psy13859 30 LVQVVYEWAMQ------------KEGIIVRCIQQLSELLRSIKDGAKIFGERDLPLKMDQAIQVIKRDIV 87 (108)
Q Consensus 30 LmevVy~Wa~G------------~EGsIVR~irRL~ELlrql~~Aa~~iG~~~L~~k~~~a~~~ikRdIV 87 (108)
..-+..+|.++ ..|++........-+++.+...|+..|...+...+......|..++-
T Consensus 584 ~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~l~~~a~~l~~a~~~i~~~~~~~~~~~~l~~l~~rl~~gv~ 653 (715)
T 2va8_A 584 VALIMKDWMDEVDEDTILSKYNIGSGDLRNMVETMDWLTYSAYHLSRELKLNEHADKLRILNLRVRDGIK 653 (715)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCChhhHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCC
Confidence 45578899988 47999999999999999999999999998888877777777766653
No 10
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=38.30 E-value=60 Score=23.15 Aligned_cols=51 Identities=22% Similarity=0.309 Sum_probs=41.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhhhCCCcHHHHHHHHHHhhcCCccccch
Q psy13859 41 KEGIIVRCIQQLSELLRSIKDGAKIFGERDLPLKMDQAIQVIKRDIVFAPS 91 (108)
Q Consensus 41 ~EGsIVR~irRL~ELlrql~~Aa~~iG~~~L~~k~~~a~~~ikRdIVf~~S 91 (108)
.+|+.-..++|+.|++..+.+.+=--.+++-.+|+.+-.+.=+|+=+|-+.
T Consensus 86 ~~gt~a~~v~~~~e~i~~l~~~~~~~~~~~~k~Ki~klldiW~k~~~Fp~e 136 (157)
T 3clj_A 86 KPGTCAHAINTLGEVIQELLSDAIAKSNQDHKEKIRMLLDIWDRSGLFQKS 136 (157)
T ss_dssp STTSHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTS
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCCCCHH
Confidence 458887778889999999877654445888899999999999998888665
No 11
>3qry_B Putative uncharacterized protein; alpha-alpha six fold, glycoside hydrolase, mannosidase, 1- deoxymannojirimycin, hydrolase; HET: DMJ; 1.75A {Streptococcus pneumoniae} SCOP: a.102.1.0 PDB: 3qpf_A* 3qsp_A*
Probab=37.81 E-value=13 Score=30.76 Aligned_cols=38 Identities=11% Similarity=0.210 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhCCCcHHHHHHHHHHhhcCCc
Q psy13859 45 IVRCIQQLSELLRSIKDGAKIFGERDLPLKMDQAIQVIKRDI 86 (108)
Q Consensus 45 IVR~irRL~ELlrql~~Aa~~iG~~~L~~k~~~a~~~ikRdI 86 (108)
.++.++++.|+++.+ .+.|+.+|++++.+..+-||.+|
T Consensus 233 ~~v~L~~~aei~~~~----~v~~d~~la~~~~~la~eIr~~I 270 (426)
T 3qry_B 233 AVVVLGYVQEIFAAL----NLADSQSVIADAKRLQDEIQEGI 270 (426)
T ss_dssp HHHHHHHHHHHHHHH----TCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc----cccCcHHHHHHHHHHHHHHHHHH
Confidence 356777777776543 24478889999988888777654
No 12
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=35.36 E-value=51 Score=21.68 Aligned_cols=37 Identities=8% Similarity=0.103 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhhhhCCCcHHHHHHHHHHhhcCCc
Q psy13859 50 QQLSELLRSIKDGAKIFGERDLPLKMDQAIQVIKRDI 86 (108)
Q Consensus 50 rRL~ELlrql~~Aa~~iG~~~L~~k~~~a~~~ikRdI 86 (108)
..+.++.-.++.+|+.+|-|.|.+-.......+|.+-
T Consensus 50 ~~l~~~aHkLkGaa~~~Ga~~L~~~~~~LE~~~r~~~ 86 (119)
T 3myf_A 50 ATMLSTIHKLHGASCYCGVPTTQRLCQEIESALKRQT 86 (119)
T ss_dssp HHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCC
Confidence 4667778888999999999999888887777777764
No 13
>3c1q_A General secretion pathway protein F; type 2 secretion system, T2SS, T4PB, inner membrane membrane, transmembrane, transport protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB: 2vmb_A* 2vma_A*
Probab=34.21 E-value=31 Score=22.13 Aligned_cols=32 Identities=9% Similarity=0.011 Sum_probs=23.6
Q ss_pred HHhhhhCCCcHHHHHHHHHHhhcCCccccchh
Q psy13859 61 DGAKIFGERDLPLKMDQAIQVIKRDIVFAPSL 92 (108)
Q Consensus 61 ~Aa~~iG~~~L~~k~~~a~~~ikRdIVf~~SL 92 (108)
.+++..+|+.+.+.++++.+.++.|.-++.+|
T Consensus 37 ~~~~~~~~~~l~~~l~~i~~~l~~G~sls~Al 68 (123)
T 3c1q_A 37 AVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSL 68 (123)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHCCCCHHHHH
Confidence 34455678888888999888888887665554
No 14
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=32.67 E-value=46 Score=22.22 Aligned_cols=36 Identities=11% Similarity=0.127 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhhhhCCCcHHHHHHHHHHhhcCCc
Q psy13859 51 QLSELLRSIKDGAKIFGERDLPLKMDQAIQVIKRDI 86 (108)
Q Consensus 51 RL~ELlrql~~Aa~~iG~~~L~~k~~~a~~~ikRdI 86 (108)
.+.++.-.++.+|+.+|-+.|.+-.....+.+|.+-
T Consensus 60 ~l~~~aHkLkGaa~~~Ga~~L~~~c~~LE~~~r~g~ 95 (123)
T 3iqt_A 60 GLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGT 95 (123)
T ss_dssp THHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCC
Confidence 455667778889999999999888777777777754
No 15
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=31.61 E-value=45 Score=22.76 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhCCCCCcchhhh-----hhcchhHHHHHHHHhcc
Q psy13859 2 NIEVESIEKKHGVERDKSSEEA-----DNLNFGLVQVVYEWAMQ 40 (108)
Q Consensus 2 a~~Ia~v~~~~~l~~~~~~~y~-----~~~~~~LmevVy~Wa~G 40 (108)
|+-|-+.-.+.|++.+.+ +.. +..|||+.+-+-.||.-
T Consensus 38 AKGifKyL~elGvPas~~-dv~aRg~qegWn~gFT~k~~gWAek 80 (115)
T 2es9_A 38 AKGILKYLHDLGVPVSPE-VVVARGEQEGWNPEFTKKVAGWAEK 80 (115)
T ss_dssp HHHHHHHHHHTTCCCCHH-HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHH-HHHHhcccccCChhHHHHHHHHHHH
Confidence 677888899999998766 433 46999999999999975
No 16
>2whn_A PILC, pilus assembly protein PILC; transport, transmembrane, pilus biogenesis, protein transpor; 2.05A {Thermus thermophilus}
Probab=30.27 E-value=33 Score=21.55 Aligned_cols=31 Identities=13% Similarity=0.165 Sum_probs=21.2
Q ss_pred HhhhhCCCcHHHHHHHHHHhhcCCccccchh
Q psy13859 62 GAKIFGERDLPLKMDQAIQVIKRDIVFAPSL 92 (108)
Q Consensus 62 Aa~~iG~~~L~~k~~~a~~~ikRdIVf~~SL 92 (108)
+++..+|+.+.+.++.+.+.++.|.-++.+|
T Consensus 39 ~~~~~~~~~~~~~~~~i~~~l~~G~sls~al 69 (116)
T 2whn_A 39 LERQTENRKFREILKQVRTDVEGGMAFSEAL 69 (116)
T ss_dssp HTTSCCSHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHCCCcHHHHH
Confidence 3444567778888888888888776555443
No 17
>3cqx_C BAG family molecular chaperone regulator 2; protein-protein complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; 2.30A {Mus musculus} PDB: 3d0t_A
Probab=30.04 E-value=41 Score=22.23 Aligned_cols=20 Identities=30% Similarity=0.508 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q psy13859 47 RCIQQLSELLRSIKDGAKIF 66 (108)
Q Consensus 47 R~irRL~ELlrql~~Aa~~i 66 (108)
|.-|||+-||+++-+|-|.|
T Consensus 68 kIkkRLe~Ll~~id~aek~i 87 (88)
T 3cqx_C 68 KIKRRLETLLRNIDNSDKAI 87 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhhcC
Confidence 66799999999999987765
No 18
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=29.88 E-value=38 Score=27.10 Aligned_cols=44 Identities=9% Similarity=0.249 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhhhhCCCc---HHHHHHHHHHhhcCCccccch
Q psy13859 48 CIQQLSELLRSIKDGAKIFGERD---LPLKMDQAIQVIKRDIVFAPS 91 (108)
Q Consensus 48 ~irRL~ELlrql~~Aa~~iG~~~---L~~k~~~a~~~ikRdIVf~~S 91 (108)
.-..+.+|+++++.+.+++|+.. +.+.=.......||.||+...
T Consensus 241 ~P~ef~~lv~~ir~i~~alG~~~~~~~~~~E~~~~~~~rrSlva~~d 287 (350)
T 3g8r_A 241 NPEQVRRWLAAAARALAMLGDGEDDAVSETEQASLRSLRRGVFATRP 287 (350)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCTTCCCCCHHHHHHHHTTSCEEEESSC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHhccceEEEEccc
Confidence 56778899999999999999862 222222334456776666543
No 19
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=29.41 E-value=97 Score=23.35 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=27.7
Q ss_pred hHHHHHHH---HHHHHHHHHHhhhhCCCcHHHHHHHHHHhhcCC
Q psy13859 45 IVRCIQQL---SELLRSIKDGAKIFGERDLPLKMDQAIQVIKRD 85 (108)
Q Consensus 45 IVR~irRL---~ELlrql~~Aa~~iG~~~L~~k~~~a~~~ikRd 85 (108)
+...+.+| .+.+++|+.+++-++.++=.+++-+.+..+-|+
T Consensus 314 L~~~i~~ll~d~~~~~~m~~~a~~~~~~~aa~~ia~~i~~larG 357 (365)
T 3s2u_A 314 LAAQLSEVLMHPETLRSMADQARSLAKPEATRTVVDACLEVARG 357 (365)
T ss_dssp HHHHHHHHHHCTHHHHHHHHHHHHTCCTTHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcc
Confidence 56666665 356778888888888887777776666655554
No 20
>3ip0_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; alpha beta, ATP-binding, folate biosynthesis, nucleotide-binding; HET: APC HHR HHS; 0.89A {Escherichia coli} PDB: 1eq0_A 1dy3_A* 1ex8_A* 1hka_A 1eqm_A* 1rao_A* 1rb0_A* 2f63_A 2f65_A 1q0n_A* 3ud5_A* 3ude_A* 3udv_A* 4f7v_A* 3kue_A 3hd2_A* 1f9h_A* 1g4c_A 1kbr_A 1hq2_A* ...
Probab=29.17 E-value=16 Score=25.97 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhcC----CccccchhhhH--hhhCCcceeee
Q psy13859 72 PLKMDQAIQVIKR----DIVFAPSLWTK--LLVGGQPHYYH 106 (108)
Q Consensus 72 ~~k~~~a~~~ikR----dIVf~~SLYl~--~~~~~~~~~~~ 106 (108)
.+-+++|.+.++. .++-.+|+|-+ .-.++||.|+.
T Consensus 15 ~~~l~~A~~~L~~~~~~~v~~~S~~YeT~p~g~~~qp~FlN 55 (158)
T 3ip0_A 15 LEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLN 55 (158)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEECCCEEECCSSCSSSCCEEE
T ss_pred HHHHHHHHHHHHcCCCCcEEEEeeEEEeCCCCCCcccchhe
Confidence 5677888888866 35678999987 35678998874
No 21
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=28.68 E-value=26 Score=24.58 Aligned_cols=42 Identities=5% Similarity=0.037 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhhhCCCcHHHHHHHHHHhhcCCc--cccchhhhH
Q psy13859 52 LSELLRSIKDGAKIFGERDLPLKMDQAIQVIKRDI--VFAPSLWTK 95 (108)
Q Consensus 52 L~ELlrql~~Aa~~iG~~~L~~k~~~a~~~ikRdI--Vf~~SLYl~ 95 (108)
.+.|+.|++... -|..++...+....++++.-+ +.+.|+||-
T Consensus 15 ~~~ll~~l~~ll--~~~~dl~~~L~~v~~ll~~~l~~~~~~gfYL~ 58 (160)
T 3ksh_A 15 YTLLKKQAASLI--EDEHHMIAILSNMSALLNDNLDQINWVGFYLL 58 (160)
T ss_dssp HHHHHHHHHHTT--TTCCCHHHHHHHHHHHHHHHCSSCSEEEEEEE
T ss_pred HHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHcccCCEEEEEEE
Confidence 356777776632 267899999999999988865 678898864
No 22
>3qbc_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; protein-inhibitor complex, ferredoxin-like fold; HET: B55; 1.65A {Staphylococcus aureus}
Probab=27.93 E-value=13 Score=26.75 Aligned_cols=36 Identities=11% Similarity=0.309 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhcC----CccccchhhhHh--hhCCcceeee
Q psy13859 71 LPLKMDQAIQVIKR----DIVFAPSLWTKL--LVGGQPHYYH 106 (108)
Q Consensus 71 L~~k~~~a~~~ikR----dIVf~~SLYl~~--~~~~~~~~~~ 106 (108)
-.+-+.+|.++++. .++..+|+|-+. -.+.||.|+.
T Consensus 18 ~~~~l~~A~~~L~~~~~~~v~~~S~~yeT~P~G~~~q~~FlN 59 (161)
T 3qbc_A 18 RESQLNDAIKILNEYDGISVSNISPIYETAPVGYTEQPNFLN 59 (161)
T ss_dssp HHHHHHHHHHHHHHSTTEEEEEECCCEEECCSSSSSSCCEEE
T ss_pred HHHHHHHHHHHHhcCCCCceEEECCEEEECCCCCCCCCcceE
Confidence 36678888888875 478889999884 4567998874
No 23
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=27.01 E-value=55 Score=22.15 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q psy13859 44 IIVRCIQQLSELLRSIKDGA 63 (108)
Q Consensus 44 sIVR~irRL~ELlrql~~Aa 63 (108)
++-++||||.||-.|...||
T Consensus 78 tv~~~irrl~e~~~~~~~~~ 97 (103)
T 4a17_Y 78 TAKTTMNRLKKLQEEQAAAA 97 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44568999999998865554
No 24
>1yar_O Proteasome activator protein PA26; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Trypanosoma brucei} SCOP: a.24.8.1 PDB: 1ya7_O 1yau_O 1fnt_c 3jse_O 3jrm_O 3jtl_O 1z7q_c 3ipm_O
Probab=26.45 E-value=91 Score=23.59 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=21.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhhh
Q psy13859 41 KEGIIVRCIQQLSELLRSIKDGAKIF 66 (108)
Q Consensus 41 ~EGsIVR~irRL~ELlrql~~Aa~~i 66 (108)
..-+++-++++-..+|+.+-+.|..|
T Consensus 69 vP~~v~~~L~~~Q~~~h~iY~~AEtI 94 (237)
T 1yar_O 69 SPEQLLGVLQRYQDLCHNVYCQAETI 94 (237)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 45578999999999999988877654
No 25
>3qt9_A Putative uncharacterized protein CPE0426; alpha-alpha six fold, glycoside hydrolase, mannosidase, HYDR; HET: YDR; 2.05A {Clostridium perfringens} SCOP: a.102.1.8 PDB: 3qt3_A* 2nvp_A
Probab=25.86 E-value=27 Score=28.97 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhCCCcHHHHHHHHHHhhcCCc
Q psy13859 46 VRCIQQLSELLRSIKDGAKIFGERDLPLKMDQAIQVIKRDI 86 (108)
Q Consensus 46 VR~irRL~ELlrql~~Aa~~iG~~~L~~k~~~a~~~ikRdI 86 (108)
++.++++.|+++++ -|+.+|++++.+..+-||.+|
T Consensus 236 ~vaL~~~aei~~~l------~~d~~La~~~~~la~eIr~aI 270 (427)
T 3qt9_A 236 VVALRYISEIAEKV------YKDEELKEKADSLREEIDNAI 270 (427)
T ss_dssp HHHHHHHHHHHHHT------SCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh------ccCHHHHHHHHHHHHHHHHHH
Confidence 46677777765432 267789999888888777754
No 26
>3p2c_A Putative glycosyl hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE PGE; 1.60A {Bacteroides ovatus} SCOP: a.102.1.8 PDB: 3on6_A*
Probab=24.84 E-value=28 Score=29.09 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhCCCcHHHHHHHHHHhhcCCc
Q psy13859 46 VRCIQQLSELLRSIKDGAKIFGERDLPLKMDQAIQVIKRDI 86 (108)
Q Consensus 46 VR~irRL~ELlrql~~Aa~~iG~~~L~~k~~~a~~~ikRdI 86 (108)
++.++++.++++++ -||.+|.+++++..+-||.+|
T Consensus 264 ~v~L~~aaei~~~l------~~d~~la~~~~~lA~eIr~gI 298 (463)
T 3p2c_A 264 VSSLRKAAEILEKV------NKKTALSKECKDLAQEVETAL 298 (463)
T ss_dssp HHHHHHHHHHHHHT------SCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh------ccCHHHHHHHHHHHHHHHHHH
Confidence 45677776665532 277889999988888887755
No 27
>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8
Probab=24.74 E-value=29 Score=29.23 Aligned_cols=35 Identities=11% Similarity=0.284 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhC-CCcHHHHHHHHHHhhcCCc
Q psy13859 45 IVRCIQQLSELLRSIKDGAKIFG-ERDLPLKMDQAIQVIKRDI 86 (108)
Q Consensus 45 IVR~irRL~ELlrql~~Aa~~iG-~~~L~~k~~~a~~~ikRdI 86 (108)
.+..++++.+++++ +| +++|++++++..+.||++|
T Consensus 281 a~v~L~~aaeia~~-------v~~d~~la~~~~~lA~eI~~gI 316 (489)
T 2p0v_A 281 AVTSLRKAAEILNT-------VNRKPALAKECTALADEVEKAL 316 (489)
T ss_dssp HHHHHHHHHHHHHH-------TSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------hccCHHHHHHHHHHHHHHHHHH
Confidence 45677777777663 34 6788888888888777755
No 28
>1eci_B Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=23.90 E-value=76 Score=17.30 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=21.1
Q ss_pred chhHHHHHHHHhccCCchhHHHHHH
Q psy13859 27 NFGLVQVVYEWAMQKEGIIVRCIQQ 51 (108)
Q Consensus 27 ~~~LmevVy~Wa~G~EGsIVR~irR 51 (108)
+....+-+..||+--||+|--.|+|
T Consensus 6 klticpt~~~~akkc~g~iat~ik~ 30 (34)
T 1eci_B 6 KLTICPTLKSMAKKCEGSIATMIKK 30 (34)
T ss_dssp HHHHHHHHHHHHTTBSTTHHHHHHH
T ss_pred EEEEcCcchHHHHhccccHHHHHHH
Confidence 3456778899999999999988887
No 29
>2imu_A Structural polyprotein (PP) P1; IBDV, birnavirus, DPC, VP2, pore formation, viral protein; NMR {Synthetic}
Probab=21.72 E-value=35 Score=20.02 Aligned_cols=10 Identities=30% Similarity=0.574 Sum_probs=7.8
Q ss_pred chhHHHHHHH
Q psy13859 43 GIIVRCIQQL 52 (108)
Q Consensus 43 GsIVR~irRL 52 (108)
++|||.|||.
T Consensus 4 ~Diir~irr~ 13 (46)
T 2imu_A 4 KDIIRAIRRI 13 (46)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5788888886
No 30
>1zv1_A Doublesex protein; UBA domain, dimerization, sex determination, transcription factor, protein binding; 1.60A {Drosophila melanogaster} PDB: 2jz0_A
Probab=21.60 E-value=1.6e+02 Score=18.39 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=31.1
Q ss_pred cchhHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHH
Q psy13859 26 LNFGLVQVVYEWAMQKEGIIVRCIQQLSELLRSIKDG 62 (108)
Q Consensus 26 ~~~~LmevVy~Wa~G~EGsIVR~irRL~ELlrql~~A 62 (108)
|.+.+|+.+|-=-++.-|++=-+-||++|--+-+..-
T Consensus 22 YpWEmMpLMYVILK~A~~d~eeAsrrI~Eg~~~v~~y 58 (65)
T 1zv1_A 22 YPWELMPLMYVILKDADANIEEASRRIEEGQYVVNEY 58 (65)
T ss_dssp CCGGGHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999876655443
No 31
>2qx0_A 7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase; 3-layered alpha-BATA-alpha fold, homodimer, ternary complex, transferase; HET: APC PH2; 1.80A {Yersinia pestis}
Probab=21.53 E-value=30 Score=24.69 Aligned_cols=35 Identities=14% Similarity=0.240 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhcC----CccccchhhhHh--hhCCcceeee
Q psy13859 72 PLKMDQAIQVIKR----DIVFAPSLWTKL--LVGGQPHYYH 106 (108)
Q Consensus 72 ~~k~~~a~~~ikR----dIVf~~SLYl~~--~~~~~~~~~~ 106 (108)
.+-+++|.+.++. .++..+|+|-+. -..+||.|+.
T Consensus 16 ~~~l~~A~~~L~~~~~~~~~~~S~~y~T~P~g~~~q~~FlN 56 (159)
T 2qx0_A 16 LQQVSAAREALAHLPRSRLVACSPLYRTKPLGPQDQPDFLN 56 (159)
T ss_dssp HHHHHHHHHHHHTCTTEEEEEECCCEEECCCSSSCCCCEEE
T ss_pred HHHHHHHHHHHhcCCCCceEEecCcEEeCCCCCCCCcccce
Confidence 4678888888877 468889999884 4457898874
No 32
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=21.24 E-value=91 Score=22.33 Aligned_cols=40 Identities=10% Similarity=0.125 Sum_probs=29.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhhhCC-CcHHHHHHHHHHh
Q psy13859 41 KEGIIVRCIQQLSELLRSIKDGAKIFGE-RDLPLKMDQAIQV 81 (108)
Q Consensus 41 ~EGsIVR~irRL~ELlrql~~Aa~~iG~-~~L~~k~~~a~~~ 81 (108)
..|.+++.+.++++-|.+++++-+- || .+|.+.|+++.+.
T Consensus 237 n~~~~~~~l~~~~~~l~~~~~~i~~-~d~~~l~~~~~~~~~~ 277 (281)
T 2g5c_A 237 NKENVMKAIEGFEKSLNHLKELIVR-EAEEELVEYLKEVKIK 277 (281)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 6778999999999988888876542 33 3577788776553
No 33
>1sy9_B Cyclic-nucleotide-gated olfactory channel; helix-turn-helix, calcium-binding protein; NMR {Xenopus laevis}
Probab=21.23 E-value=46 Score=17.13 Aligned_cols=11 Identities=55% Similarity=0.872 Sum_probs=9.4
Q ss_pred hHHHHHHHHhc
Q psy13859 29 GLVQVVYEWAM 39 (108)
Q Consensus 29 ~LmevVy~Wa~ 39 (108)
.|+.|+.+||+
T Consensus 12 rlvgv~r~wa~ 22 (26)
T 1sy9_B 12 RLVGVLREWAY 22 (26)
T ss_pred HHHHHHHHHHH
Confidence 57899999996
No 34
>2oez_A UPF0289 protein VP2528; immunoglobulin fold, alpha-structure, structural genomics, P protein structure initiative; HET: MSE; 1.97A {Vibrio parahaemolyticus} SCOP: e.68.1.1
Probab=21.12 E-value=1.4e+02 Score=22.75 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy13859 46 VRCIQQLSELLRSIKDGAK 64 (108)
Q Consensus 46 VR~irRL~ELlrql~~Aa~ 64 (108)
||+..|||.|.+|+.....
T Consensus 16 iRt~LRLE~Lf~ql~~~~~ 34 (247)
T 2oez_A 16 TRIYLRVESLLRQAHLASG 34 (247)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 7999999999999988754
No 35
>2l3i_A Aoxki4A, antimicrobial peptide in spider venom; antimicrobial protein; NMR {Araneae}
Probab=21.00 E-value=50 Score=17.45 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHH
Q psy13859 46 VRCIQQLSELLRS 58 (108)
Q Consensus 46 VR~irRL~ELlrq 58 (108)
-|.++||--++||
T Consensus 15 qrvlkrllamlrq 27 (30)
T 2l3i_A 15 QRVLKRLLAMLRQ 27 (30)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 3788888888887
Done!