BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13861
(1048 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine.
pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine
And Histone Peptide
Length = 192
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 62/98 (63%), Gaps = 2/98 (2%)
Query: 486 EFISEYCGEIISQDEADRRGKVYD-KYMCSFLFNLNNDFVVDATRKGNKIRFANHSINPN 544
E + EY G +I + D+R K YD K + ++F +++ VVDAT GN RF NHS PN
Sbjct: 76 EMVIEYAGNVIRSIQTDKREKYYDSKGIGCYMFRIDDSEVVDATMHGNAARFINHSCEPN 135
Query: 545 CYAKVMMVNGDHRIGIFAKRAILPGEELYFDYRYGPTE 582
CY++V+ ++G I IFA R I GEEL +DY++ P E
Sbjct: 136 CYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKF-PIE 172
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 1002 SDVAGWGIFLKDSAQKNEFISEYCGEIISQDEADRRGKVYD 1042
S + G G+F K + E + EY G +I + D+R K YD
Sbjct: 59 SPIHGRGLFCKRNIDAGEMVIEYAGNVIRSIQTDKREKYYD 99
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set
Domain- Containing Protein 2 Compound: Pr-Snf
pdb|4H12|A Chain A, The Crystal Structure Of Methyltransferase Domain Of Human
Set Domain- Containing Protein 2 In Complex With
S-Adenosyl-L-Homocysteine
Length = 278
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 59/107 (55%), Gaps = 5/107 (4%)
Query: 485 NEFISEYCGEIISQDEADRRGKVY--DKYMCSFLFNLNNDFVVDATRKGNKIRFANHSIN 542
N F+ EYCGE++ E R K Y +K + + L ND ++DAT+KGN RF NHS
Sbjct: 140 NTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCE 199
Query: 543 PNCYAKVMMVNGDHRIGIFAKRAILPGEELYFDY---RYGPTEQLKF 586
PNC + VNG R+G F + + G EL FDY RYG Q F
Sbjct: 200 PNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYGKEAQKCF 246
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 984 CKNVSVQRGLHKHLLMAPSDVAGWGIFLKDSAQKNEFISEYCGEIISQDEADRRGKVYDK 1043
C N QR H + + ++ GWG+ N F+ EYCGE++ E R K Y +
Sbjct: 106 CSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYAR 165
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of
Variegation 3-9 Homolog 2
Length = 300
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 63/102 (61%), Gaps = 7/102 (6%)
Query: 483 QKNEFISEYCGEIISQDEADRRGKVYDKYMCSFLFNLN---NDFVVDATRKGNKIRFANH 539
++ F+ EY GE+I+ +EA+RRG+ YD ++LF+L+ ++F VDA R GN F NH
Sbjct: 162 KRMSFVMEYVGEVITSEEAERRGQFYDNKGITYLFDLDYESDEFTVDAARYGNVSHFVNH 221
Query: 540 SINPNCYA-KVMMVNGDH---RIGIFAKRAILPGEELYFDYR 577
S +PN V + N D RI +F+ R I GEEL FDY+
Sbjct: 222 SCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDYQ 263
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 961 VRECDPDLCQTCGADQFDVSKISCKNVSVQRGLHKHL-LMAPSDVAGWGIFLKDSAQKNE 1019
+ EC+ CQ CG D C N VQ+G L + S+ GWG+ ++
Sbjct: 116 IYECN-SRCQ-CGPD--------CPNRIVQKGTQYSLCIFRTSNGRGWGVKTLVKIKRMS 165
Query: 1020 FISEYCGEIISQDEADRRGKVYD 1042
F+ EY GE+I+ +EA+RRG+ YD
Sbjct: 166 FVMEYVGEVITSEEAERRGQFYD 188
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
N-Methyltransferase Nsd1 Set Domain In Complex With
S-Adenosyl-L-Methionine
Length = 232
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 61/103 (59%), Gaps = 2/103 (1%)
Query: 476 MMTKTCQQKNEFISEYCGEIISQDEADRRGKVYDKYMCS--FLFNLNNDFVVDATRKGNK 533
+ TKT +K EF++EY GE+I ++E R + ++ + ++ L+ D ++DA KGN
Sbjct: 106 LRTKTDIKKGEFVNEYVGELIDEEECRARIRYAQEHDITNFYMLTLDKDRIIDAGPKGNY 165
Query: 534 IRFANHSINPNCYAKVMMVNGDHRIGIFAKRAILPGEELYFDY 576
RF NH PNC + VNGD R+G+FA I G EL F+Y
Sbjct: 166 ARFMNHCCQPNCETQKWSVNGDTRVGLFALSDIKAGTELTFNY 208
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 20/105 (19%)
Query: 941 FPGCRCKAQCNTKQCPC--------YLAVRECDPDLCQTCGADQFDVSKISCKNVSVQRG 992
P C CKA T + PC + + EC P +C G C+N +
Sbjct: 42 IPRCNCKA---TDENPCGIDSECINRMLLYECHPTVCPAGG---------RCQNQCFSKR 89
Query: 993 LHKHLLMAPSDVAGWGIFLKDSAQKNEFISEYCGEIISQDEADRR 1037
+ + + + GWG+ K +K EF++EY GE+I ++E R
Sbjct: 90 QYPEVEIFRTLQRGWGLRTKTDIKKGEFVNEYVGELIDEEECRAR 134
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
Length = 222
Score = 76.3 bits (186), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
Query: 476 MMTKTCQQKNEFISEYCGEIISQDE-ADRRGKVYDKYMCSFLFNLNNDFVVDATRKGNKI 534
+ TK + +FI EY GE++S+ E +R + Y + + NL++ V+D+ R GN+
Sbjct: 88 IRTKEPLKAGQFIIEYLGEVVSEQEFRNRMIEQYHNHSDHYCLNLDSGMVIDSYRMGNEA 147
Query: 535 RFANHSINPNCYAKVMMVNGDHRIGIFAKRAILPGEELYFDYRY 578
RF NHS +PNC + VNG +RIG++A + + G EL +DY +
Sbjct: 148 RFINHSCDPNCEMQKWSVNGVYRIGLYALKDMPAGTELTYDYNF 191
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 959 LAVRECDPDLCQTCGADQFDVSKISCKNVSVQRGLHKHLL-MAPSDVAGWGIFLKDSAQK 1017
+ EC P+ C CG C N +QR L ++ GWGI K+ +
Sbjct: 46 MIFAECSPNTC-PCGE--------QCCNQRIQRHEWVQCLERFRAEEKGWGIRTKEPLKA 96
Query: 1018 NEFISEYCGEIISQDEADRR 1037
+FI EY GE++S+ E R
Sbjct: 97 GQFIIEYLGEVVSEQEFRNR 116
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 53/98 (54%), Gaps = 14/98 (14%)
Query: 487 FISEYCGEIISQDEADRRGKVYDKYMCSFLFNLNND----FVVDATRKGNKIRFANHSIN 542
FI EY GE+IS EAD R S+LF+L+N + +DA GN RF NH +
Sbjct: 151 FICEYVGELISDAEADVREDD------SYLFDLDNKDGEVYCIDARYYGNISRFINHLCD 204
Query: 543 PNCY-AKVMMVNGDH---RIGIFAKRAILPGEELYFDY 576
PN +V M++ D RI F+ R I GEEL FDY
Sbjct: 205 PNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELGFDY 242
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 983 SCKNVSVQRGLHKHLLMAPSDVAGWGIFLKDSAQKNEFISEYCGEIISQDEADRR 1037
+CKN VQ G+ L + + GWG+ + + FI EY GE+IS EAD R
Sbjct: 114 NCKNRVVQSGIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEADVR 168
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 53/98 (54%), Gaps = 14/98 (14%)
Query: 487 FISEYCGEIISQDEADRRGKVYDKYMCSFLFNLNND----FVVDATRKGNKIRFANHSIN 542
FI EY GE+IS EAD R S+LF+L+N + +DA GN RF NH +
Sbjct: 153 FICEYVGELISDAEADVREDD------SYLFDLDNKDGEVYCIDARYYGNISRFINHLCD 206
Query: 543 PNCY-AKVMMVNGDH---RIGIFAKRAILPGEELYFDY 576
PN +V M++ D RI F+ R I GEEL FDY
Sbjct: 207 PNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELGFDY 244
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 983 SCKNVSVQRGLHKHLLMAPSDVAGWGIFLKDSAQKNEFISEYCGEIISQDEADRR 1037
+CKN VQ G+ L + + GWG+ + + FI EY GE+IS EAD R
Sbjct: 116 NCKNRVVQSGIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEADVR 170
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
Length = 299
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 54/99 (54%), Gaps = 9/99 (9%)
Query: 487 FISEYCGEIISQDEADRRGKVYDKYMCSFLFNLN-----NDFVVDATRKGNKIRFANHSI 541
FI+ Y GE+I+ EA +R K YD ++LF+L+ +++ VDA G+ RF NHS
Sbjct: 162 FITCYLGEVITSAEAAKRDKNYDDDGITYLFDLDMFDDASEYTVDAQNYGDVSRFFNHSC 221
Query: 542 NPNCYAKVMMVNGDHR----IGIFAKRAILPGEELYFDY 576
+PN + N R + FA + I P EEL FDY
Sbjct: 222 SPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDY 260
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%)
Query: 982 ISCKNVSVQRGLHKHLLMAPSDVAGWGIFLKDSAQKNEFISEYCGEIISQDEADRRGKVY 1041
+ C N VQRG L + + GWG+ A FI+ Y GE+I+ EA +R K Y
Sbjct: 124 MECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNY 183
Query: 1042 D 1042
D
Sbjct: 184 D 184
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
Length = 287
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 52/98 (53%), Gaps = 14/98 (14%)
Query: 487 FISEYCGEIISQDEADRRGKVYDKYMCSFLFNLNND----FVVDATRKGNKIRFANHSIN 542
F+ EY GE+IS EAD R + S+LF+L+N + +DA GN RF NH
Sbjct: 172 FVCEYVGELISDSEADVREED------SYLFDLDNKDGEVYCIDARFYGNVSRFINHHCE 225
Query: 543 PNCY-AKVMMVNGD---HRIGIFAKRAILPGEELYFDY 576
PN +V M + D RI F+ R I GE+L FDY
Sbjct: 226 PNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDY 263
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 983 SCKNVSVQRGLHKHLLMAPSDVAGWGIFLKDSAQKNEFISEYCGEIISQDEADRRGKVYD 1042
+C+N VQ GL L + + GWG+ F+ EY GE+IS EAD R + D
Sbjct: 135 NCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREE--D 192
Query: 1043 KYM 1045
Y+
Sbjct: 193 SYL 195
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 52/98 (53%), Gaps = 14/98 (14%)
Query: 487 FISEYCGEIISQDEADRRGKVYDKYMCSFLFNLNND----FVVDATRKGNKIRFANHSIN 542
F+ EY GE+IS EAD R + S+LF+L+N + +DA GN RF NH
Sbjct: 170 FVCEYVGELISDSEADVREED------SYLFDLDNKDGEVYCIDARFYGNVSRFINHHCE 223
Query: 543 PNCY-AKVMMVNGD---HRIGIFAKRAILPGEELYFDY 576
PN +V M + D RI F+ R I GE+L FDY
Sbjct: 224 PNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDY 261
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 983 SCKNVSVQRGLHKHLLMAPSDVAGWGIFLKDSAQKNEFISEYCGEIISQDEADRRGKVYD 1042
+C+N VQ GL L + + GWG+ F+ EY GE+IS EAD R + D
Sbjct: 133 NCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREE--D 190
Query: 1043 KYM 1045
Y+
Sbjct: 191 SYL 193
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
Length = 261
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 52/98 (53%), Gaps = 14/98 (14%)
Query: 487 FISEYCGEIISQDEADRRGKVYDKYMCSFLFNLNND----FVVDATRKGNKIRFANHSIN 542
F+ EY GE+IS EAD R + S+LF+L+N + +DA GN RF NH
Sbjct: 146 FVCEYVGELISDSEADVREED------SYLFDLDNKDGEVYCIDARFYGNVSRFINHHCE 199
Query: 543 PNCY-AKVMMVNGD---HRIGIFAKRAILPGEELYFDY 576
PN +V M + D RI F+ R I GE+L FDY
Sbjct: 200 PNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDY 237
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 983 SCKNVSVQRGLHKHLLMAPSDVAGWGIFLKDSAQKNEFISEYCGEIISQDEADRRGKVYD 1042
+C+N VQ GL L + + GWG+ F+ EY GE+IS EAD R + D
Sbjct: 109 NCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREE--D 166
Query: 1043 KYM 1045
Y+
Sbjct: 167 SYL 169
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam
pdb|4IJ8|B Chain B, Crystal Structure Of The Complex Of Setd8 With Sam
Length = 165
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 57/100 (57%), Gaps = 8/100 (8%)
Query: 484 KNEFISEYCGEIISQDEADRRGKVYDK------YMCSFLFNLNNDFVVDATRKGNKI-RF 536
+ +F+ EY G++I +A +R +Y + YM F + L+ + VDATR+ N++ R
Sbjct: 51 RGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQY-LSKTYCVDATRETNRLGRL 109
Query: 537 ANHSINPNCYAKVMMVNGDHRIGIFAKRAILPGEELYFDY 576
NHS + NC K+ ++G + + A R I GEEL +DY
Sbjct: 110 INHSKSGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDY 149
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9X|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9Y|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
pdb|3F9Y|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
Length = 166
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 8/100 (8%)
Query: 484 KNEFISEYCGEIISQDEADRRGKVYDK------YMCSFLFNLNNDFVVDATRKGNKI-RF 536
+ +F+ EY G++I +A +R +Y + YM F + L+ + VDATR+ N++ R
Sbjct: 52 RGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQY-LSKTYCVDATRETNRLGRL 110
Query: 537 ANHSINPNCYAKVMMVNGDHRIGIFAKRAILPGEELYFDY 576
NHS NC K+ ++G + + A R I GEEL FDY
Sbjct: 111 INHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLFDY 150
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
pdb|4I51|B Chain B, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
Length = 286
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 14/97 (14%)
Query: 487 FISEYCGEIISQDEADRRGKVYDKYMCSFLFNLNND----FVVDATRKGNKIRFANHSIN 542
F+ EY GE+IS EAD R + S+LF+L+N + +DA GN RF NH
Sbjct: 171 FVCEYVGELISDSEADVREED------SYLFDLDNKDGEVYCIDARFYGNVSRFINHHCE 224
Query: 543 PNCY-AKVMMVNGD---HRIGIFAKRAILPGEELYFD 575
PN +V M + D RI F+ R I GE+L FD
Sbjct: 225 PNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFD 261
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 983 SCKNVSVQRGLHKHLLMAPSDVAGWGIFLKDSAQKNEFISEYCGEIISQDEADRRGKVYD 1042
+C+N VQ GL L + + GWG+ F+ EY GE+IS EAD R + D
Sbjct: 134 NCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREE--D 191
Query: 1043 KYM 1045
Y+
Sbjct: 192 SYL 194
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
pdb|2BQZ|E Chain E, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
Length = 161
Score = 57.4 bits (137), Expect = 4e-08, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 8/100 (8%)
Query: 484 KNEFISEYCGEIISQDEADRRGKVYDK------YMCSFLFNLNNDFVVDATRKGNKI-RF 536
+ +F+ EY G++I +A +R +Y + YM F + L+ + VDATR+ N++ R
Sbjct: 47 RGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQY-LSKTYCVDATRETNRLGRL 105
Query: 537 ANHSINPNCYAKVMMVNGDHRIGIFAKRAILPGEELYFDY 576
NHS NC K+ ++G + + A R I GEEL +DY
Sbjct: 106 INHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDY 145
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|B Chain B, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|C Chain C, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|D Chain D, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
Length = 167
Score = 57.4 bits (137), Expect = 4e-08, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 8/100 (8%)
Query: 484 KNEFISEYCGEIISQDEADRRGKVYDK------YMCSFLFNLNNDFVVDATRKGNKI-RF 536
+ +F+ EY G++I +A +R +Y + YM F + L+ + VDATR+ N++ R
Sbjct: 53 RGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQY-LSKTYCVDATRETNRLGRL 111
Query: 537 ANHSINPNCYAKVMMVNGDHRIGIFAKRAILPGEELYFDY 576
NHS NC K+ ++G + + A R I GEEL +DY
Sbjct: 112 INHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDY 151
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
Length = 166
Score = 56.2 bits (134), Expect = 8e-08, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 8/100 (8%)
Query: 484 KNEFISEYCGEIISQDEADRRGKVYDK------YMCSFLFNLNNDFVVDATRKGNKI-RF 536
+ +F+ E+ G++I +A +R +Y + YM F + L+ + VDATR+ N++ R
Sbjct: 52 RGDFVVEFHGDLIEITDAKKREALYAQDPSTGCYMYYFQY-LSKTYCVDATRETNRLGRL 110
Query: 537 ANHSINPNCYAKVMMVNGDHRIGIFAKRAILPGEELYFDY 576
NHS NC K+ ++G + + A R I GEEL +DY
Sbjct: 111 INHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDY 150
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human
Histone-Lysine N-Methyltransferase Setmar
Length = 290
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 484 KNEFISEYCGEIISQDEADRRGKVYDK----YMCSFLFNLNNDFV----VDATRKGNKIR 535
K F+ EY GE++ E RR + K Y+ + ++ N V VD T GN R
Sbjct: 148 KGRFVCEYAGEVLGFSEVQRRIHLQTKSDSNYIIAIREHVYNGQVMETFVDPTYIGNIGR 207
Query: 536 FANHSINPNCYAKVMMVNG-DHRIGIFAKRAILPGEELYFDY 576
F NHS PN + ++ ++ +FA + I+P EEL +DY
Sbjct: 208 FLNHSCEPNLLMIPVRIDSMVPKLALFAAKDIVPEEELSYDY 249
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 13/113 (11%)
Query: 938 QNRFPGCRC-KAQCNTKQCPCYLAVRECDPDLC-QTCGADQ------FDVSKI-----SC 984
Q FPGC C K C C C D + C + G+ F+ + + C
Sbjct: 56 QITFPGCICVKTPCLPGTCSCLRHGENYDDNSCLRDIGSGGKYAEPVFECNVLCRCSDHC 115
Query: 985 KNVSVQRGLHKHLLMAPSDVAGWGIFLKDSAQKNEFISEYCGEIISQDEADRR 1037
+N VQ+GL H + + GWG+ + K F+ EY GE++ E RR
Sbjct: 116 RNRVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEVLGFSEVQRR 168
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 54/123 (43%), Gaps = 28/123 (22%)
Query: 483 QKNEFISEYCGEIISQDEADRR--GKVYDKYMCSFLFNLN--------------NDFVVD 526
++ +F+ Y GEII+ +EADRR + +LF L+ VD
Sbjct: 154 KRGQFVDRYLGEIITSEEADRRRAESTIARRKDVYLFALDKFSDPDSLDPLLAGQPLEVD 213
Query: 527 ATRKGNKIRFANHSINPN--CYAKVMMVNGDHR------IGIFAKRAILPGEELYFDYRY 578
RF NHS +PN +A+V GDH + +FA + I G EL FDY
Sbjct: 214 GEYMSGPTRFINHSCDPNMAIFARV----GDHADKHIHDLALFAIKDIPKGTELTFDYVN 269
Query: 579 GPT 581
G T
Sbjct: 270 GLT 272
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 984 CKNVSVQRGLHKHLLMAPSDVAGWGIFLKDSAQKNEFISEYCGEIISQDEADRR 1037
C N V+RG L + + GWG+ + ++ +F+ Y GEII+ +EADRR
Sbjct: 122 CPNRVVERGRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRR 175
>pdb|2KXP|A Chain A, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 275
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 211 YLPVKLKNYDGKV----HGDTGSAGFLDNQIFIELVNDLIKYQVKDSEEE 256
+ PVK++ YD +V HGD G+ FLD + I D ++ + D + E
Sbjct: 56 FTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPE 105
>pdb|1IZN|A Chain A, Crystal Structure Of Actin Filament Capping Protein Capz
pdb|1IZN|C Chain C, Crystal Structure Of Actin Filament Capping Protein Capz
pdb|3LK2|A Chain A, Crystal Structure Of Capz Bound To The Uncapping Motif
From Carmil
pdb|3LK3|A Chain A, Crystal Structure Of Capz Bound To The Cpi And Csi
Uncapping Motifs From Carmil
pdb|3LK4|A Chain A, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|D Chain D, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|G Chain G, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|J Chain J, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|M Chain M, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|P Chain P, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|S Chain S, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|V Chain V, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|Y Chain Y, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|1 Chain 1, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|4 Chain 4, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|7 Chain 7, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|2KZ7|A Chain A, Solution Structure Of The Carmil Cah3aB DOMAIN BOUND TO
CAPPING Protein (Cp)
pdb|3AA0|A Chain A, Crystal Structure Of Actin Capping Protein In Complex With
The Cp- Binding Motif Derived From Carmil
pdb|3AA1|A Chain A, Crystal Structure Of Actin Capping Protein In Complex With
The Cp- Binding Motif Derived From Ckip-1
pdb|3AA6|A Chain A, Crystal Structure Of Actin Capping Protein In Complex With
The Cp- Binding Motif Derived From Cd2ap
pdb|3AA7|A Chain A, Crystal Structure Of Actin Capping Protein
pdb|3AAA|A Chain A, Crystal Structure Of Actin Capping Protein In Complex With
V-1
pdb|3AAE|A Chain A, Crystal Structure Of Actin Capping Protein In Complex With
Carmil Fragment
pdb|3AAE|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
Carmil Fragment
pdb|3AAE|E Chain E, Crystal Structure Of Actin Capping Protein In Complex With
Carmil Fragment
pdb|3AAE|G Chain G, Crystal Structure Of Actin Capping Protein In Complex With
Carmil Fragment
pdb|3AAE|I Chain I, Crystal Structure Of Actin Capping Protein In Complex With
Carmil Fragment
Length = 286
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 211 YLPVKLKNYDGKV----HGDTGSAGFLDNQIFIELVNDLIKYQVKDSEEE 256
+ PVK++ YD +V HGD G+ FLD + I D ++ + D + E
Sbjct: 62 FTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPE 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,355,533
Number of Sequences: 62578
Number of extensions: 1179116
Number of successful extensions: 2397
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2331
Number of HSP's gapped (non-prelim): 45
length of query: 1048
length of database: 14,973,337
effective HSP length: 109
effective length of query: 939
effective length of database: 8,152,335
effective search space: 7655042565
effective search space used: 7655042565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)