RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13861
(1048 letters)
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET,
lysine, alternative splicing, cell cycle, cell division,
chromatin regulator, chromosomal protein, coiled coil;
HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A*
3f9z_A* 1zkk_A* 2bqz_A*
Length = 166
Score = 159 bits (404), Expect = 3e-45
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 483 QKNEFISEYCGEIISQDEADRRGKVYDKYMCS-----FLFNLNNDFVVDATRKGNKI-RF 536
+ +F+ EY G++I +A +R +Y + + + L+ + VDATR+ N++ R
Sbjct: 51 SRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYCVDATRETNRLGRL 110
Query: 537 ANHSINPNCYAKVMMVNGDHRIGIFAKRAILPGEELYFDYRYGPTEQLK 585
NHS NC K+ ++G + + A R I GEEL FDY ++
Sbjct: 111 INHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLFDYGDRSKASIE 159
Score = 84.3 bits (209), Expect = 5e-19
Identities = 12/68 (17%), Positives = 30/68 (44%)
Query: 980 SKISCKNVSVQRGLHKHLLMAPSDVAGWGIFLKDSAQKNEFISEYCGEIISQDEADRRGK 1039
+ + ++ G + + + D G G+ + +F+ EY G++I +A +R
Sbjct: 15 EERKRIDELIESGKEEGMKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREA 74
Query: 1040 VYDKYMCS 1047
+Y + +
Sbjct: 75 LYAQDPST 82
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation,
chromosomal rearrangement, protein lysine
methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo
sapiens} PDB: 2w5z_A*
Length = 192
Score = 158 bits (401), Expect = 2e-44
Identities = 42/104 (40%), Positives = 61/104 (58%), Gaps = 1/104 (0%)
Query: 483 QKNEFISEYCGEIISQDEADRRGKVYD-KYMCSFLFNLNNDFVVDATRKGNKIRFANHSI 541
E + EY G +I + D+R K YD K + ++F +++ VVDAT GN RF NHS
Sbjct: 73 DAGEMVIEYAGNVIRSIQTDKREKYYDSKGIGCYMFRIDDSEVVDATMHGNAARFINHSC 132
Query: 542 NPNCYAKVMMVNGDHRIGIFAKRAILPGEELYFDYRYGPTEQLK 585
PNCY++V+ ++G I IFA R I GEEL +DY++ +
Sbjct: 133 EPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFPIEDASN 176
Score = 83.5 bits (207), Expect = 2e-18
Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 17/117 (14%)
Query: 936 DCQNRFPGCRCKAQCNTKQCPCYLAVRECDPDLCQTCGADQFDVSKISCKNVSVQRGLHK 995
+R P ++ A R DL + +++ +
Sbjct: 5 SHMHRQPPEYNPNDEEEEEVQLKSARRATSMDLPM------------PMRFRHLKKTSKE 52
Query: 996 HLLMAPSDVAGWGIFLKDSAQKNEFISEYCGEIISQDEADRRGKVYDK-----YMCS 1047
+ + S + G G+F K + E + EY G +I + D+R K YD YM
Sbjct: 53 AVGVYRSPIHGRGLFCKRNIDAGEMVIEYAGNVIRSIQTDKREKYYDSKGIGCYMFR 109
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20
specific; SET domain, S-adenosyl-L methionine; HET: SAM;
1.75A {Homo sapiens}
Length = 232
Score = 151 bits (382), Expect = 2e-41
Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
Query: 483 QKNEFISEYCGEIISQDEADRRGKVYDKYM--CSFLFNLNNDFVVDATRKGNKIRFANHS 540
+K EF++EY GE+I ++E R + ++ ++ L+ D ++DA KGN RF NH
Sbjct: 113 KKGEFVNEYVGELIDEEECRARIRYAQEHDITNFYMLTLDKDRIIDAGPKGNYARFMNHC 172
Query: 541 INPNCYAKVMMVNGDHRIGIFAKRAILPGEELYFDYRYGPTEQLKFV 587
PNC + VNGD R+G+FA I G EL F+Y K V
Sbjct: 173 CQPNCETQKWSVNGDTRVGLFALSDIKAGTELTFNYNLECLGNGKTV 219
Score = 103 bits (258), Expect = 8e-25
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 15/123 (12%)
Query: 926 FCEKFCKCSFDCQNRFPGCRCKAQCNTK-----QCPCYLAVRECDPDLCQTCGADQFDVS 980
+ + D + P C CKA +C + + EC P +C G
Sbjct: 28 PIGRVQIFTADL-SEIPRCNCKATDENPCGIDSECINRMLLYECHPTVCP-AGG------ 79
Query: 981 KISCKNVSVQRGLHKHLLMAPSDVAGWGIFLKDSAQKNEFISEYCGEIISQDEADRRGKV 1040
C+N + + + + + GWG+ K +K EF++EY GE+I ++E R +
Sbjct: 80 --RCQNQCFSKRQYPEVEIFRTLQRGWGLRTKTDIKKGEFVNEYVGELIDEEECRARIRY 137
Query: 1041 YDK 1043
+
Sbjct: 138 AQE 140
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus;
HET: SAM; 2.90A {Homo sapiens}
Length = 222
Score = 149 bits (377), Expect = 9e-41
Identities = 37/99 (37%), Positives = 58/99 (58%), Gaps = 1/99 (1%)
Query: 483 QKNEFISEYCGEIISQDEADRRGK-VYDKYMCSFLFNLNNDFVVDATRKGNKIRFANHSI 541
+ +FI EY GE++S+ E R Y + + NL++ V+D+ R GN+ RF NHS
Sbjct: 95 KAGQFIIEYLGEVVSEQEFRNRMIEQYHNHSDHYCLNLDSGMVIDSYRMGNEARFINHSC 154
Query: 542 NPNCYAKVMMVNGDHRIGIFAKRAILPGEELYFDYRYGP 580
+PNC + VNG +RIG++A + + G EL +DY +
Sbjct: 155 DPNCEMQKWSVNGVYRIGLYALKDMPAGTELTYDYNFHS 193
Score = 97.0 bits (242), Expect = 1e-22
Identities = 30/114 (26%), Positives = 42/114 (36%), Gaps = 17/114 (14%)
Query: 931 CKCSFDCQNRFPGCRCKAQCNTKQCPCYLAVRECDPDLCQTCGADQFDVSKISCKNVSVQ 990
C C + GC C + EC P+ C CG C N +Q
Sbjct: 25 CNCKKPDDDTRKGC-------VDDCLNRMIFAECSPNTCP-CGE--------QCCNQRIQ 68
Query: 991 RGLHKHLL-MAPSDVAGWGIFLKDSAQKNEFISEYCGEIISQDEADRRGKVYDK 1043
R L ++ GWGI K+ + +FI EY GE++S+ E R
Sbjct: 69 RHEWVQCLERFRAEEKGWGIRTKEPLKAGQFIIEYLGEVVSEQEFRNRMIEQYH 122
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing
protein 2, S-adenos methionine, structural genomics,
structural genomics consor SGC; HET: SAM; 1.99A {Homo
sapiens}
Length = 278
Score = 148 bits (376), Expect = 5e-40
Identities = 41/98 (41%), Positives = 55/98 (56%), Gaps = 2/98 (2%)
Query: 483 QKNEFISEYCGEIISQDEADRRGKVYD--KYMCSFLFNLNNDFVVDATRKGNKIRFANHS 540
N F+ EYCGE++ E R K Y K + + L ND ++DAT+KGN RF NHS
Sbjct: 138 PSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHS 197
Query: 541 INPNCYAKVMMVNGDHRIGIFAKRAILPGEELYFDYRY 578
PNC + VNG R+G F + + G EL FDY++
Sbjct: 198 CEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQF 235
Score = 106 bits (266), Expect = 2e-25
Identities = 35/176 (19%), Positives = 58/176 (32%), Gaps = 30/176 (17%)
Query: 868 DTTPPRKKKKKHRLWSVHCRKIQLKKDSSSNHVHNFTPCRHPPTQPCDASCPCVSAQNFC 927
D P++ K+ + + C ++++ R C+ C +S
Sbjct: 20 DFRDPQRWKECAKQGKMPCYFDLIEENVYLTERKKNKSHRDIKRMQCE--CTPLSKDERA 77
Query: 928 EKFCKCSFDCQNRFPGCRCKAQCNTKQCPCYLAVRECDPDLCQTCGADQFDVSKISCKNV 987
+ C DC NR C ++C G C N
Sbjct: 78 QGEIACGEDCLNRLLMIECSSRCP--------------------NGD--------YCSNR 109
Query: 988 SVQRGLHKHLLMAPSDVAGWGIFLKDSAQKNEFISEYCGEIISQDEADRRGKVYDK 1043
QR H + + ++ GWG+ N F+ EYCGE++ E R K Y +
Sbjct: 110 RFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYAR 165
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4,
SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP:
b.85.7.1 PDB: 1mvx_A
Length = 299
Score = 131 bits (330), Expect = 8e-34
Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 478 TKTCQQKNEFISEYCGEIISQDEADRRGKVYDKYMCSFLFNLN-----NDFVVDATRKGN 532
+ FI+ Y GE+I+ EA +R K YD ++LF+L+ +++ VDA G+
Sbjct: 153 SLRFAPAGTFITCYLGEVITSAEAAKRDKNYDDDGITYLFDLDMFDDASEYTVDAQNYGD 212
Query: 533 KIRFANHSINPNCYAKVMMVNGD----HRIGIFAKRAILPGEELYFDYRYG 579
RF NHS +PN + N + + FA + I P EEL FDY
Sbjct: 213 VSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGA 263
Score = 99.1 bits (247), Expect = 8e-23
Identities = 37/149 (24%), Positives = 52/149 (34%), Gaps = 15/149 (10%)
Query: 903 FTPCRHPPTQPCDASCPCVSA---QNFCEKFCKCSFDCQNRFPGCRCKAQCNTKQCPCYL 959
T PP + C C S C+C D P +
Sbjct: 54 LTQGVIPPDPNFQSGCNCSSLGGCDLNNPSRCECLDDLDE--PTHFAYDAQGRVRADTGA 111
Query: 960 AVRECDPDLCQTCGADQFDVSKISCKNVSVQRGLHKHLLMAPSDVAGWGIFLKDSAQKNE 1019
+ EC+ C C + C N VQRG L + + GWG+ A
Sbjct: 112 VIYECNS-FCS-CS--------MECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGT 161
Query: 1020 FISEYCGEIISQDEADRRGKVYDKYMCSF 1048
FI+ Y GE+I+ EA +R K YD ++
Sbjct: 162 FITCYLGEVITSAEAAKRDKNYDDDGITY 190
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati
regulator, DNA damage, DNA repair, DNA-binding, nucleus,
ST genomics; HET: SAH; 1.59A {Homo sapiens}
Length = 290
Score = 129 bits (326), Expect = 3e-33
Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 9/126 (7%)
Query: 483 QKNEFISEYCGEIISQDEADRRGKVYDKYMCSFLFNLN--------NDFVVDATRKGNKI 534
K F+ EY GE++ E RR + K +++ + + VD T GN
Sbjct: 147 PKGRFVCEYAGEVLGFSEVQRRIHLQTKSDSNYIIAIREHVYNGQVMETFVDPTYIGNIG 206
Query: 535 RFANHSINPNCYAKVMMVNGD-HRIGIFAKRAILPGEELYFDYRYGPTEQLKFVVTLDSN 593
RF NHS PN + ++ ++ +FA + I+P EEL +DY +
Sbjct: 207 RFLNHSCEPNLLMIPVRIDSMVPKLALFAAKDIVPEEELSYDYSGRYLNLTVSASKERLD 266
Query: 594 VANKYI 599
Sbjct: 267 HGKLRK 272
Score = 111 bits (279), Expect = 5e-27
Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 13/126 (10%)
Query: 936 DCQNRFPGCRCK-AQCNTKQCPCYLAVRECDPDLCQ-TCGADQFDVSKI----------- 982
Q FPGC C C C C D + C G+ +
Sbjct: 54 PTQITFPGCICVKTPCLPGTCSCLRHGENYDDNSCLRDIGSGGKYAEPVFECNVLCRCSD 113
Query: 983 SCKNVSVQRGLHKHLLMAPSDVAGWGIFLKDSAQKNEFISEYCGEIISQDEADRRGKVYD 1042
C+N VQ+GL H + + GWG+ + K F+ EY GE++ E RR +
Sbjct: 114 HCRNRVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEVLGFSEVQRRIHLQT 173
Query: 1043 KYMCSF 1048
K ++
Sbjct: 174 KSDSNY 179
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9
methyltransferase 2, H3 lysine-9 specific 2, alternative
splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}
Length = 300
Score = 126 bits (318), Expect = 3e-32
Identities = 41/103 (39%), Positives = 62/103 (60%), Gaps = 7/103 (6%)
Query: 483 QKNEFISEYCGEIISQDEADRRGKVYDKYMCSFLFNLN---NDFVVDATRKGNKIRFANH 539
++ F+ EY GE+I+ +EA+RRG+ YD ++LF+L+ ++F VDA R GN F NH
Sbjct: 162 KRMSFVMEYVGEVITSEEAERRGQFYDNKGITYLFDLDYESDEFTVDAARYGNVSHFVNH 221
Query: 540 SINPNCYAKVMMVNGD----HRIGIFAKRAILPGEELYFDYRY 578
S +PN + ++ RI +F+ R I GEEL FDY+
Sbjct: 222 SCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDYQM 264
Score = 93.4 bits (232), Expect = 8e-21
Identities = 38/152 (25%), Positives = 61/152 (40%), Gaps = 18/152 (11%)
Query: 898 NHVHNFTPCRHPPTQPCDASCPCVSAQNFCEKFCKCSFDCQNRFPGCRCKAQCNTKQCPC 957
+++ + P +A+ C F +K C K P
Sbjct: 60 YYINEYKPAPGIS-LVNEATFGCSCTDCFFQKCCPAEAGVL-----LAYNKNQQIK-IPP 112
Query: 958 YLAVRECDPDLCQTCGADQFDVSKISCKNVSVQRGLHKHL-LMAPSDVAGWGIFLKDSAQ 1016
+ EC+ CQ CG D C N VQ+G L + S+ GWG+ +
Sbjct: 113 GTPIYECNSR-CQ-CGPD--------CPNRIVQKGTQYSLCIFRTSNGRGWGVKTLVKIK 162
Query: 1017 KNEFISEYCGEIISQDEADRRGKVYDKYMCSF 1048
+ F+ EY GE+I+ +EA+RRG+ YD ++
Sbjct: 163 RMSFVMEYVGEVITSEEAERRGQFYDNKGITY 194
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1,
structural genomics, SGC, structural genomics
consortium, alternative splicing, ANK repeat; HET: MLZ
SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A*
3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A*
3rjw_A* 2o8j_A*
Length = 287
Score = 115 bits (290), Expect = 1e-28
Identities = 37/100 (37%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 483 QKNEFISEYCGEIISQDEADRRGKVYDKYMCSFLFNLNNDFVVDATRKGNKIRFANHSIN 542
F+ EY GE+IS EAD R + D Y+ + +DA GN RF NH
Sbjct: 168 PPGTFVCEYVGELISDSEADVREE--DSYLFDLDNKDGEVYCIDARFYGNVSRFINHHCE 225
Query: 543 PNCYA-KVMMVNGD---HRIGIFAKRAILPGEELYFDYRY 578
PN +V M + D RI F+ R I GE+L FDY
Sbjct: 226 PNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGE 265
Score = 96.1 bits (239), Expect = 6e-22
Identities = 30/124 (24%), Positives = 42/124 (33%), Gaps = 15/124 (12%)
Query: 938 QNRFPGCRCKAQCNTKQCPCYLAVRECDPDLCQTCGADQFDVSKI-------------SC 984
C C C++ C C C D + +C
Sbjct: 77 ITHLQYCVCIDDCSSSNCMCGQLSMRCWYDKDGRLLPEFNMAEPPLIFECNHACSCWRNC 136
Query: 985 KNVSVQRGLHKHLLMAPSDVAGWGIFLKDSAQKNEFISEYCGEIISQDEADRRGKVYDKY 1044
+N VQ GL L + + GWG+ F+ EY GE+IS EAD R + D Y
Sbjct: 137 RNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREE--DSY 194
Query: 1045 MCSF 1048
+
Sbjct: 195 LFDL 198
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer;
NMR {Paramecium bursaria chlorella virus 1} SCOP:
b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*
Length = 119
Score = 103 bits (260), Expect = 2e-26
Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 13/94 (13%)
Query: 483 QKNEFISEYCGEIISQDEADRRGKVYDKYMCSFLFNLNNDFVVDATRKGNKIRFANHSIN 542
+K E + E + D+ + +LF+ N A G NHS +
Sbjct: 25 EKGELVEECLCIVRHNDDWGTA-------LEDYLFSRKNM---SAMALGFG-AIFNHSKD 73
Query: 543 PNCYAKVMMVNGDHRIGIFAKRAILPGEELYFDY 576
PN ++ G R+ IF + I GEE+ Y
Sbjct: 74 PNARHEL--TAGLKRMRIFTIKPIAIGEEITISY 105
Score = 53.8 bits (130), Expect = 7e-09
Identities = 10/49 (20%), Positives = 23/49 (46%)
Query: 993 LHKHLLMAPSDVAGWGIFLKDSAQKNEFISEYCGEIISQDEADRRGKVY 1041
+ +++ S + G+G+F + S +K E + E + D+ + Y
Sbjct: 2 FNDRVIVKKSPLGGYGVFARKSFEKGELVEECLCIVRHNDDWGTALEDY 50
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET
domain, protein lysine methyltransferase, enzyme-
peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo
sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A*
3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A*
4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Length = 261
Score = 108 bits (271), Expect = 2e-26
Identities = 28/112 (25%), Positives = 39/112 (34%), Gaps = 13/112 (11%)
Query: 483 QKNEFISEYCGEIISQDEADRRGKVYDKYMCSFLFNLNNDFVVDATRKGNKI-------- 534
N +S Y G I+ E D R + +L+ + V+D N +
Sbjct: 132 GPNTVMSFYNGVRITHQEVDSRDWALNGNT----LSLDEETVIDVPEPYNHVSKYCASLG 187
Query: 535 RFANHSINPNCYAKVM-MVNGDHRIGIFAKRAILPGEELYFDYRYGPTEQLK 585
ANHS PNC + I RA+ EEL Y Y + K
Sbjct: 188 HKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSPPGK 239
Score = 94.4 bits (234), Expect = 1e-21
Identities = 25/138 (18%), Positives = 42/138 (30%), Gaps = 14/138 (10%)
Query: 925 NFCEKFCKCSFDCQNRFPGCRC-------KAQCNTKQCPCYLAVRECDPDLCQTCGADQF 977
E +P R + + ++ E P G +
Sbjct: 27 EVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEGRPHFELMPGNSVY 86
Query: 978 DVSKISCKNVSVQRGL-----HKHLLMAPSDV--AGWGIFLKDSAQKNEFISEYCGEIIS 1030
K + +S L + + +A S + AG G+F K + N +S Y G I+
Sbjct: 87 HFDKSTSSCISTNALLPDPYESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRIT 146
Query: 1031 QDEADRRGKVYDKYMCSF 1048
E D R + S
Sbjct: 147 HQEVDSRDWALNGNTLSL 164
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent
methyltransferase histone H3 lysine- 9 methylation;
1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Length = 302
Score = 105 bits (262), Expect = 8e-25
Identities = 34/117 (29%), Positives = 49/117 (41%), Gaps = 20/117 (17%)
Query: 483 QKNEFISEYCGEIISQDEADRRGKVYD--KYMCSFLFNLNND--------------FVVD 526
++ +F+ Y GEII+ +EADRR + +LF L+ VD
Sbjct: 154 KRGQFVDRYLGEIITSEEADRRRAESTIARRKDVYLFALDKFSDPDSLDPLLAGQPLEVD 213
Query: 527 ATRKGNKIRFANHSINPNCYAKVMMVNGD----HRIGIFAKRAILPGEELYFDYRYG 579
RF NHS +PN + + H + +FA + I G EL FDY G
Sbjct: 214 GEYMSGPTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNG 270
Score = 81.9 bits (202), Expect = 6e-17
Identities = 28/135 (20%), Positives = 49/135 (36%), Gaps = 13/135 (9%)
Query: 912 QPCDASCPCVSAQNFCEKFCKCSFDCQNRFPGCRCKAQ---CNTKQCPCYLAVRECDPDL 968
+ ++C C+ + + RF A+ + + EC
Sbjct: 57 ECMYSTCQCLDEMAPDSDEEADPYTRKKRFAYYSQGAKKGLLRDRVLQSQEPIYECHQG- 115
Query: 969 CQTCGADQFDVSKISCKNVSVQRGLHKHLLMAPSDVAGWGIFLKDSAQKNEFISEYCGEI 1028
C + C N V+RG L + + GWG+ + ++ +F+ Y GEI
Sbjct: 116 ---CACSK------DCPNRVVERGRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEI 166
Query: 1029 ISQDEADRRGKVYDK 1043
I+ +EADRR
Sbjct: 167 ITSEEADRRRAESTI 181
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone
methyltransferase, transcription regulat histone lysine,
SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo
sapiens}
Length = 273
Score = 84.4 bits (208), Expect = 5e-18
Identities = 23/97 (23%), Positives = 32/97 (32%), Gaps = 5/97 (5%)
Query: 483 QKNEFISEYCGEIISQDEADRRGKVYDKYMCSFLFNLNNDFVVDATRKGNKIRFANHSIN 542
++N+ I G I E + + F + A F NH
Sbjct: 157 KRNDKIELLVGCIAELSEIEEN-MLLRHGENDFSVMYSTR-KNCAQLWLGPAAFINHDCR 214
Query: 543 PNCYAKVMMVNGDHRIGIFAKRAILPGEELYFDYRYG 579
PNC + G + A R I PGEE+ Y G
Sbjct: 215 PNCKF---VSTGRDTACVKALRDIEPGEEISCYYGDG 248
Score = 39.3 bits (91), Expect = 0.005
Identities = 8/42 (19%), Positives = 14/42 (33%)
Query: 1002 SDVAGWGIFLKDSAQKNEFISEYCGEIISQDEADRRGKVYDK 1043
S+ G I ++N+ I G I E + +
Sbjct: 143 SEQNGAKIVATKEWKRNDKIELLVGCIAELSEIEENMLLRHG 184
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor,
variegation 4-20 homolog 2, structural genomics,
structural genomics consortium, SGC; HET: SAM; 1.80A
{Homo sapiens}
Length = 247
Score = 80.5 bits (198), Expect = 8e-17
Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 6/94 (6%)
Query: 483 QKNEFISEYCGEIISQDEADRRGKVYDKYMCSFLFNLNNDFVVDATRKGNKIRFANHSIN 542
+KNE + G I EAD + + + + A F NH
Sbjct: 129 KKNEKLELLVGCIAELREADEG---LLRAGENDFSIMYSTRKRSAQLWLGPAAFINHDCK 185
Query: 543 PNCYAKVMMVNGDHRIGIFAKRAILPGEELYFDY 576
PNC + + + R I PG+E+ Y
Sbjct: 186 PNCK---FVPADGNAACVKVLRDIEPGDEVTCFY 216
Score = 36.2 bits (83), Expect = 0.034
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 1001 PSDVAGWGIFLKDSAQKNEFISEYCGEIISQDEADRR 1037
+ G I + +KNE + G I EAD
Sbjct: 114 SMETNGAKIVSTRAWKKNEKLELLVGCIAELREADEG 150
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator,
alternative initiation, alternative splicing,
DNA-binding, metal-binding, nucleus; 1.79A {Homo
sapiens} PDB: 2jv0_A*
Length = 149
Score = 64.3 bits (156), Expect = 3e-12
Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 4/99 (4%)
Query: 478 TKTCQQKNEFISEYCGEIISQDEADRRGKVYDKYMCSFLFNLNNDFVVDATRKGNKIRFA 537
K + + G+ + + +++ Y + + + KGN +R+
Sbjct: 47 ATKPILKGKKFGPFVGDKKKRSQVKNNVYMWEVYYPNLGWMCIDA---TDPEKGNWLRYV 103
Query: 538 NHSINPNCYAKVMMVNGDHRIGIFAKRAILPGEELYFDY 576
N + + + + + I + I PGEEL Y
Sbjct: 104 NWACSGEE-QNLFPLEINRAIYYKTLKPIAPGEELLVWY 141
Score = 38.8 bits (90), Expect = 0.002
Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 2/80 (2%)
Query: 969 CQTCGADQFDVSKISCKNVSVQRGLHKHLLMAPSDV--AGWGIFLKDSAQKNEFISEYCG 1026
Q ++ V RGL + + + PS V G++ K + + G
Sbjct: 3 NQNTTEPVAATETLAEVPEHVLRGLPEEVRLFPSAVDKTRIGVWATKPILKGKKFGPFVG 62
Query: 1027 EIISQDEADRRGKVYDKYMC 1046
+ + + +++ Y
Sbjct: 63 DKKKRSQVKNNVYMWEVYYP 82
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4,
structural genomics, structural GE consortium, SGC,
DNA-binding, metal-binding, nucleus; 2.15A {Homo
sapiens}
Length = 151
Score = 64.2 bits (156), Expect = 4e-12
Identities = 18/104 (17%), Positives = 28/104 (26%), Gaps = 9/104 (8%)
Query: 478 TKTCQQKNEFISEYCGEIISQDEADRRGKVYDKYMCSFLFNLNNDFVVDATRKG-----N 532
T G+ E ++ N +F + T +
Sbjct: 40 TGETIPVRTCFGPLIGQQSHSMEVAEWTDKAVNHIWKIYHNGVLEFCIITTDENECNWMM 99
Query: 533 KIRFANHSINPNCYAKVMMVNGDHRIGIFAKRAILPGEELYFDY 576
+R A + N A D +I + I P EL F Y
Sbjct: 100 FVRKARNREEQNLVA----YPHDGKIFFCTSQDIPPENELLFYY 139
Score = 37.2 bits (86), Expect = 0.007
Identities = 4/44 (9%), Positives = 11/44 (25%)
Query: 1005 AGWGIFLKDSAQKNEFISEYCGEIISQDEADRRGKVYDKYMCSF 1048
A G++ ++ G+ E ++
Sbjct: 34 AEVGVWTGETIPVRTCFGPLIGQQSHSMEVAEWTDKAVNHIWKI 77
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12,
structural genomics, structural genomics consortium,
SGC, DNA-binding; 2.10A {Homo sapiens}
Length = 170
Score = 60.1 bits (145), Expect = 1e-10
Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 2/100 (2%)
Query: 478 TKTCQQKNEFISEYCGEIISQDEADRRGK-VYDKYMCSFLFNLNNDFVVDATRKGNKIRF 536
+KT + + + G +I+ + D + + + + + +
Sbjct: 45 SKTWIKAGTEMGPFTGRVIAPEHVDICKNNNLMWEVFNEDGTVRYFIDASQEDHRSWMTY 104
Query: 537 ANHSINPNCYAKVMMVNGDHRIGIFAKRAILPGEELYFDY 576
+ N + +V I A I P +EL Y
Sbjct: 105 IKCARNEQEQ-NLEVVQIGTSIFYKAIEMIPPDQELLVWY 143
Score = 30.1 bits (67), Expect = 2.3
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 1005 AGWGIFLKDSAQKNEFISEYCGEIISQDEADRR 1037
G GIF K + + + G +I+ + D
Sbjct: 39 EGLGIFSKTWIKAGTEMGPFTGRVIAPEHVDIC 71
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.2 bits (150), Expect = 7e-10
Identities = 64/482 (13%), Positives = 137/482 (28%), Gaps = 140/482 (29%)
Query: 484 KNEFISEYCGEIISQDEADRR------------GKVYDKYMCSFLFNLNNDFVVDATRKG 531
K+ E II +A ++ K++ L +N F++ +
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL-RINYKFLMSPIKTE 101
Query: 532 NKIRFANHSINPNCYAKVMMVNGDHRIGIFAKRAILPGEELYFDYRYGPTEQLKFVVTLD 591
+ + + + N + +FAK Y R P +L+
Sbjct: 102 QRQPSMMTRMYIEQRDR--LYNDNQ---VFAK---------YNVSRLQPYLKLR------ 141
Query: 592 SNVANKYIYEWDFNLRSPVSATILFGNMRAMEIKNYQSSKVVLGKNKTGGILMPLELLRE 651
+ LR P ++ G + LG KT + L++
Sbjct: 142 ---------QALLELR-PAKNVLIDG----V-----------LGSGKT---WVALDVCLS 173
Query: 652 ANTSCQYD------TAGRCYKYDCFLHRLKDHHSGPNLMRRKRPDLKPFSDPCSPDCYML 705
C+ D C + L L+ L+ + P+ SD S +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQ------KLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 706 LDGMKEKIEAEIKDEEEQEMKKKTKLDLEEDDKMQVDDQNAVQATEVK-----TTKGKLS 760
I+AE++ + + + L L + V + A A + TT+
Sbjct: 228 -----HSIQAELRRLLKSKPYENCLLVL--LN---VQNAKAWNAFNLSCKILLTTR---- 273
Query: 761 IEKQV--SLDSGSGNDASSEDSND-----------SKDLKNNTEVEPVSTTT----SFSL 803
KQV L + + S + + K L + P T S+
Sbjct: 274 -FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 804 LGLMGHEGNNEWTGSDQSLFRAIHKVL---YNN---------Y--CAI--------AQVM 841
+ +G W + ++ N + ++ ++
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 842 MTKTCQQVYQFAQKEAADITTEDSANDTTPPRKKKKKHRLWSVHCR-KIQLKKDSSSNHV 900
+ + + + + K+ + S++ K++L+ + + +
Sbjct: 393 SLIWFDVIKS----DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA---L 445
Query: 901 HN 902
H
Sbjct: 446 HR 447
Score = 54.1 bits (129), Expect = 3e-07
Identities = 90/673 (13%), Positives = 187/673 (27%), Gaps = 192/673 (28%)
Query: 25 HH--SGPNLMRRKRPDLKP-FSDPCSPD--CYMLLDGMKEKI-EAEIKD--EEEQEMKKK 76
HH + + D+ F D + C + D K + + EI + +
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 77 TKL--DLEEDDKMQVDD-QNAVQATEVKTTKGKLSIE-KQVSLDSGSGNDASSEDSNDSR 132
+L L + V V K + E +Q S+ + + ND++
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 133 DL-KNNIE-VEPVSTTTSFSLLGLMGHE-------GGRYCGCFSTEWKHGLSGSSPMRDT 183
K N+ ++P +LL L + G G K ++
Sbjct: 125 VFAKYNVSRLQPYLKLRQ-ALLELRPAKNVLIDGVLG--SG------KTWVALDV-CLSY 174
Query: 184 SIHSLRSP---YTSIRTCVTGASYRTEPAVYLPVKL-KNYDGKVHGDTGSAGFLDNQIFI 239
+ + +++ C + + E L ++ N+ + D S L
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPET-VLEMLQKLLYQIDPNWTSR--SDHSSNIKLRIHSIQ 231
Query: 240 ELVNDLIKYQ-----------VKDSE----------------EESNSNKGSAEELRDKYI 272
+ L+K + V++++ + ++ SA +I
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA--TTTHI 289
Query: 273 ELPEQTDPNASPPECTP---NVDGPTAESVPRE-QTMHSFHTLICPNLMRRKRPDLKPFS 328
L + +P E + +PRE T + I +R
Sbjct: 290 SL-DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR---------D 339
Query: 329 DPCSPDCY--MLLDGMKEKIEAKIKDEEEQEMKKK-TKLDLEEDDKMQVDDQNAVQATEV 385
+ D + + D + IE+ + E E +K +L +
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS--------------A 385
Query: 386 KTTKGKLSIEKQVSLDSGSGNDASSEDSNDSRDL-KNNIEVEPVSTTTSFSLLGLMEHEG 444
LS+ + + I+ + + L+E +
Sbjct: 386 HIPTILLSL------------------------IWFDVIKSDVMVVVNKLHKYSLVE-KQ 420
Query: 445 NNEWTLDRLRPIHFR---------AIHKVLYNNYCAIAQVMMTKTCQQKNEFISEYCGEI 495
E T+ + I+ A+H+ + ++Y + +
Sbjct: 421 PKESTI-SIPSIYLELKVKLENEYALHRSIVDHY----------------NIPKTFDSDD 463
Query: 496 ISQDEADRRGKVYDKYMCSF----LFNLNNDFVVDATRK--------GNKIRFANHSINP 543
+ D+Y S L N+ + + R KIR + S
Sbjct: 464 LIPPYL-------DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR--HDSTAW 514
Query: 544 NCYAKVMMVNGDHRIGIFAKRAILPGEELYFDYRYGPTEQLKFVVTLDSNV--------- 594
N ++ + F K I + Y L F+ ++ N+
Sbjct: 515 NASGSILNTLQQLK---FYKPYICDNDPKYERLVN---AILDFLPKIEENLICSKYTDLL 568
Query: 595 ------ANKYIYE 601
++ I+E
Sbjct: 569 RIALMAEDEAIFE 581
Score = 47.5 bits (112), Expect = 2e-05
Identities = 66/529 (12%), Positives = 135/529 (25%), Gaps = 203/529 (38%)
Query: 12 CYKYDCFLHRLKDHHSGPNLMRRKRPDLKPFSDPCSPDCYMLLDGMKEKIEAEIKDEEEQ 71
Y+ D DH S L I+AE++ +
Sbjct: 206 LYQIDPNWTSRSDHSSNIKL-------------------------RIHSIQAELRRLLKS 240
Query: 72 EMKKKTKLDLEEDDKMQVDDQNAVQATEVK-----TTKGKLSIEKQVSLDSGSGNDASSE 126
+ + L L + V + A A + TT+
Sbjct: 241 KPYENCLLVL--LN---VQNAKAWNAFNLSCKILLTTR-----------------FKQVT 278
Query: 127 DSNDSRDLKNNIEVEPVSTTTSFSLLGLMGHEGGRYCGCFSTEWKHGLSGSSPMRDTSIH 186
D + + T T + L+ +Y C + + ++P R + I
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLL----LKYLDCRPQDLPREVLTTNPRRLSII- 333
Query: 187 SLRSPYTSIRTCVTGASYRTEPAVYLPVKLKNYDGKVHGDTGSAGFLDNQIFIELVNDLI 246
S R A N+ + + + +I
Sbjct: 334 --------------AESIRDGLA-----TWDNWK---------------HVNCDKLTTII 359
Query: 247 KYQVKDSEEESNSNKGSAEELRDKYIEL---PEQTDPNASPPECTPNVDGPTA------- 296
+ + E E R + L P + PT
Sbjct: 360 ESSLNVLEP---------AEYRKMFDRLSVFPP-------------SAHIPTILLSLIWF 397
Query: 297 ESVPR--EQTMHSFHTLICPNLMRRKRPDLKPFSDPCSPDCYMLLDGMKEKIEAKIKDEE 354
+ + ++ H + K+P S P Y+ L K+K E
Sbjct: 398 DVIKSDVMVVVNKLHKY----SLVEKQPKESTISI---PSIYLEL---------KVKLEN 441
Query: 355 EQEMKKK--------TKLDLEEDDKMQVDD----------QNAVQATEVKTTKGKLSIEK 396
E + + D ++ +D +N ++++ +
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP-------ERMTLFR 494
Query: 397 QVSLD----------SGSGNDASSEDSNDSRDL---KNNIEVEPVSTTTSFSLLGLMEHE 443
V LD + +AS N + L K I +++
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI----------------CDND 538
Query: 444 GNNEWTLDRLRPIHF--RAIHKVLYNNYCAIAQVMMTKTCQQKNEFISE 490
E ++ + + F + ++ + Y + ++ + ++E I E
Sbjct: 539 PKYERLVNAI--LDFLPKIEENLICSKYTDLLRIAL----MAEDEAIFE 581
Score = 44.8 bits (105), Expect = 1e-04
Identities = 95/695 (13%), Positives = 203/695 (29%), Gaps = 204/695 (29%)
Query: 252 DSEEESNSNKGSAEELRDKYI------ELPEQTDPNASPPECTPNVDGPTAESVPREQTM 305
++ E K D ++ ++ + S E + A T+
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV----SGTL 65
Query: 306 HSFHTLICPNLMRRKRPDLKPFSDPCSPDCYMLLDGMKEKIEAKIKDEEEQEMKKKTKLD 365
F TL L +++ K + + Y L I+ E+++ T++
Sbjct: 66 RLFWTL----LSKQEEMVQKFVEEVLRIN-YKFL---MSPIK-----TEQRQPSMMTRMY 112
Query: 366 LEEDDKMQVDDQNAV--------QATEVKTTKGKLSIEKQVSLD--SGSG---------N 406
+E+ D++ D+Q +++ +L K V +D GSG
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 407 DASSEDSNDSR----DLKNNIEVEPV-------STTTSFSLLGLMEHEGNN----EWTLD 451
+ D + +LKN E V + +H N
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 452 RLRPIHFRAIHK----VL-----------YNNYCAIAQVMMTKTCQQKNEFISEYCGEII 496
LR + ++ VL +N C ++++T +Q +F+S I
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC---KILLTTRFKQVTDFLSAATTTHI 289
Query: 497 SQDEADRRGKVYDKYMCSFLFNLNNDFVVDATRKGNKIRFANHSINPNCYAKVMMVNGDH 556
S D D+ L L+ + + NP
Sbjct: 290 SLDH-HSMTLTPDEVKSLLLKYLDCRP--------QDLPREVLTTNP-------RR---- 329
Query: 557 RIGIFAKRAILPGEELYFD-YRYGPTEQLK-----FVVTLDSNVANKY-----IYEWDFN 605
+ I A + +D +++ ++L + L+ K ++ +
Sbjct: 330 -LSIIA--ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 606 LRSPVSATILFGNMR---AMEIKNYQSSKVVLGKNKTGGILMPLELLREANTSCQYDTAG 662
+ + + ++++ ++ M + N ++ K + + E + + A
Sbjct: 387 IPTIL-LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA- 444
Query: 663 RCYKYDCFLHR-LKDHHSGPNLMRRKRPDLKPFSDPCSPDCYMLLDG---------MKEK 712
LHR + DH++ P + SD P LD +K
Sbjct: 445 --------LHRSIVDHYNIP----KTFD-----SDDLIPPY---LDQYFYSHIGHHLKN- 483
Query: 713 IEAEIKDEEEQEMKKKTKLDLEEDDKMQVDDQNAVQATEVKTTKGKLSIEKQVSLDSGSG 772
I+ E + + LD ++ K+ +
Sbjct: 484 ----IEHPERMTLFRMVFLDF-----------RFLEQ--------KIR-------HDSTA 513
Query: 773 NDASSEDSNDSKDLKNN----TEVEP-----VSTTTSFSLLGLMGHEGNNEWTGSDQSLF 823
+AS N + LK + +P V+ F L E
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF----LPKIE------------- 556
Query: 824 RAIHKVLYNNYCAIAQVMMTKTCQQVYQFAQKEAA 858
++ + Y + ++ + + +++ A K+
Sbjct: 557 ---ENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 43.7 bits (102), Expect = 4e-04
Identities = 102/642 (15%), Positives = 197/642 (30%), Gaps = 181/642 (28%)
Query: 352 DEEEQEMKKKTKLDLEEDDKMQVDDQNAVQATEVKTTKGKLSIEKQVSLDSGSGNDASSE 411
D E E + + K D + V + V + K + K + S E
Sbjct: 8 DFETGEHQYQYK------DILSVFEDAFVDNFDCKDV---QDMPKSI---------LSKE 49
Query: 412 DSNDSRDLKNNIEVEPVSTTTSFSLLGLMEHEGNNEWTLDRLRPIHFRAIHKVLYNNYCA 471
+ + I + + + + L + + + + + +VL NY
Sbjct: 50 EIDH-------IIMSKDAVSGTLRLFWTLLSKQEE---------MVQKFVEEVLRINYKF 93
Query: 472 IAQVMMTKTCQQKNEFISEYCGEIISQ-DEADRRGKVYDKYMCSFLFNLNNDFVVDATR- 529
+ + T+ +Q + Y I Q D +V+ KY V +R
Sbjct: 94 LMSPIKTE-QRQPSMMTRMY----IEQRDRLYNDNQVFAKY-----------NV---SRL 134
Query: 530 -KGNKIRFANHSINPNCYAKVMMVNGDHRIG--IFAKRAILPGE-ELYFDYR-----YG- 579
K+R A + P ++++G G A L + + D++
Sbjct: 135 QPYLKLRQALLELRPAKN---VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 580 ---PTEQLKFVVTLDSNVANKYIYEWDFNLRSPVSATILFGNMRA-MEIKNYQSSKVVLG 635
P L+ + L + + D + + + +R ++ K Y++ +VL
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 636 --KNKTGGILMPLELLREANTSCQ----------YDTAGRCYKYDCFLHRLKDHHSGP-- 681
+N + N SC+ D H DHHS
Sbjct: 252 NVQNA--------KAWNAFNLSCKILLTTRFKQVTDFLSAATTT----HISLDHHSMTLT 299
Query: 682 -----NLMRR----KRPDLK-------PFS----------DPCSPDCY--MLLDGMKEKI 713
+L+ + + DL P + D + + D + I
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 714 EAEIKDEEEQEMKK--------------KTKL------DLEEDDKMQVDDQNAVQATEVK 753
E+ + E E +K T L D+ + D M V ++ + K
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 754 TTK-GKLSI-EKQVSLDSGSGNDASSEDS-----NDSKDLKNNTEVEPVSTTTSFSLLGL 806
K +SI + L N+ + S N K ++ + P +S +G
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 807 MGHEGNNEWTGSDQSLFRAIH--------KVLYNNYCAIAQVMMTKTCQQVYQFAQKEAA 858
H N E +LFR + K+ +++ A + T QQ+ +
Sbjct: 480 --HLKNIEHPERM-TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY--- 533
Query: 859 DITTEDSANDTTPPRK---------KKKKHRLWSVHCRKIQL 891
I ND R K +++ + S + +++
Sbjct: 534 -ICD----NDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1,
structural genomics, structural genomics consortium,
SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}
Length = 196
Score = 57.5 bits (138), Expect = 2e-09
Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 1/99 (1%)
Query: 478 TKTCQQKNEFISEYCGEIISQDEADRRGKVYDKYMCSFLFNLNNDFVVDATRKGNKIRFA 537
+K K GEI + D + + L++ K N +R+
Sbjct: 76 SKEYIPKGTRFGPLIGEIYTNDTVPKNANRKYFWRIYSRGELHHFIDGFNEEKSNWMRYV 135
Query: 538 NHSINPNCYAKVMMVNGDHRIGIFAKRAILPGEELYFDY 576
N + +P + I + + I +EL Y
Sbjct: 136 NPAHSPRE-QNLAACQNGMNIYFYTIKPIPANQELLVWY 173
Score = 35.1 bits (80), Expect = 0.066
Identities = 13/95 (13%), Positives = 24/95 (25%), Gaps = 6/95 (6%)
Query: 949 QCNTKQCPCYLAVRECDPDLCQTCGADQFDVSKISCKNVSVQ----RGLHKHLLMAPS-- 1002
+ + + C D S + L ++LL +
Sbjct: 8 GSKKMDMEDADMTLWTEAEFEEKCTYIVNDHPWDSGADGGTSVQAEASLPRNLLFKYATN 67
Query: 1003 DVAGWGIFLKDSAQKNEFISEYCGEIISQDEADRR 1037
G+ K+ K GEI + D +
Sbjct: 68 SEEVIGVMSKEYIPKGTRFGPLIGEIYTNDTVPKN 102
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase,
structural genomics, structural G consortium, SGC,
DNA-binding, metal-binding, nucleus; 2.50A {Homo
sapiens}
Length = 152
Score = 55.8 bits (134), Expect = 4e-09
Identities = 16/107 (14%), Positives = 30/107 (28%), Gaps = 12/107 (11%)
Query: 478 TKTCQQKNEFISEYCGEIISQDEADRRGKVYDKYM---CSFLFNLNNDFVVDATR--KGN 532
+K K G ++ E + +L+ D + + N
Sbjct: 36 SKRRIPKRTQFGPVEGPLVRGSELKDCYIHLKVSLDKGDRKERDLHEDLWFELSDETLCN 95
Query: 533 KIRFANHSINP---NCYAKVMMVNGDHRIGIFAKRAILPGEELYFDY 576
+ F + N N A H + + + P +EL Y
Sbjct: 96 WMMFVRPAQNHLEQNLVA----YQYGHHVYYTTIKNVEPKQELKVWY 138
Score = 28.9 bits (64), Expect = 4.6
Identities = 7/43 (16%), Positives = 11/43 (25%)
Query: 1003 DVAGWGIFLKDSAQKNEFISEYCGEIISQDEADRRGKVYDKYM 1045
D G+F K K G ++ E +
Sbjct: 28 DRFLGGVFSKRRIPKRTQFGPVEGPLVRGSELKDCYIHLKVSL 70
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.5 bits (128), Expect = 4e-07
Identities = 55/283 (19%), Positives = 90/283 (31%), Gaps = 113/283 (39%)
Query: 434 FSLLGLMEHEGNNEWTLDRLRPIHFRAIH-KVLYNNYCAIAQVMMTKTCQQKNEFISEYC 492
FS+L ++ NN L IHF K + NY A M+ +T +
Sbjct: 1659 FSILDIVI---NNPVNLT----IHFGGEKGKRIRENYSA----MIFETIVDGKLKTEKIF 1707
Query: 493 GEIISQDEADRRGKVYDKYMCSFLFNLNNDFVVDATR-------------------KGNK 533
EI +++ S+ F ++ AT+ KG
Sbjct: 1708 KEI-------------NEHSTSYTFRSEKG-LLSATQFTQPALTLMEKAAFEDLKSKGLI 1753
Query: 534 IR---FANHSINPN-------CYAKVM-------MVNGDHRIGIFAKRAILPGEELYFDY 576
FA HS+ A VM +V +R G+ + A+ E +Y
Sbjct: 1754 PADATFAGHSL---GEYAALASLADVMSIESLVEVVF--YR-GMTMQVAVPRDELGRSNY 1807
Query: 577 R-----------YGPTEQLKFVVTLDSN-------VANKYIYEWDFNLRSP--VSATILF 616
E L++VV + N +N+ + V+A
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN-------YNVENQQYVAA---- 1856
Query: 617 GNMRAME-IKNYQSSKVVLGKNKTGGI----L---MPLELLRE 651
G++RA++ + N VL K I L + LE +
Sbjct: 1857 GDLRALDTVTN------VLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 50.0 bits (119), Expect = 4e-06
Identities = 64/343 (18%), Positives = 105/343 (30%), Gaps = 129/343 (37%)
Query: 142 PVSTTTSFSLLGL--MGHEGGRYC-GCFSTEWKHG-----LSGSSPMRDTSI-------- 185
P+S L+G+ + H Y + G L G++ +
Sbjct: 235 PIS----CPLIGVIQLAH----YVVTAKLLGFTPGELRSYLKGAT-GHSQGLVTAVAIAE 285
Query: 186 -HSLRSPYTSIRTCVT-----GA-SYRTEPAVYLPVKLKNYDGKVHGDTGSAGFLDNQIF 238
S S + S+R +T G Y P LP + D + + G +
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE-DSLENNE-GVPSPM----- 338
Query: 239 IEL-VNDLIKYQVKDSEEESNSNKGSAEELRDKYIELPEQTDPNASPPECTPN---VDGP 294
L +++L + QV+D ++NS+ + +++ I L N V GP
Sbjct: 339 --LSISNLTQEQVQDYVNKTNSHLPAGKQV---EISLV-----NG------AKNLVVSGP 382
Query: 295 TAESVPREQTMHSFHTLICPNLMRRKRPDLK-----PFSD--------------PC-SPD 334
P+ S + L L + K P PFS+ P S
Sbjct: 383 -----PQ-----SLYGL-NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH- 430
Query: 335 CYMLLDGMKEKIEAKIKDEEEQEMKKKTKLDLEEDDKMQVDDQNAVQATEVKTTKGKLSI 394
LL + I DL +++ V + I
Sbjct: 431 ---LLVPASDLINK----------------DLVKNN--------------VSFNAKDIQI 457
Query: 395 EKQVSLDSGSGNDASSEDSNDSRDLKNNIEVEPV--STTTSFS 435
V D+ G+D + S + + I PV TTT F
Sbjct: 458 --PV-YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFK 497
Score = 37.0 bits (85), Expect = 0.049
Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 50/126 (39%)
Query: 554 GDHRIGIFAKRAILPGEELYFDYRYGPTEQLKFVVTLDSNVANKYIYEWD---------- 603
G G+ G +LY S A + + W+
Sbjct: 1625 GSQEQGM--------GMDLY----------------KTSKAA-QDV--WNRADNHFKDTY 1657
Query: 604 -FNLR-----SPVSATILFGNMRAMEIK-NYQSSKVVLGKNKTGGILMPLELLREAN--- 653
F++ +PV+ TI FG + I+ NY + ++ + G L ++ +E N
Sbjct: 1658 GFSILDIVINNPVNLTIHFGGEKGKRIRENYSA---MIFETIVDGKLKTEKIFKEINEHS 1714
Query: 654 TSCQYD 659
TS +
Sbjct: 1715 TSYTFR 1720
Score = 33.5 bits (76), Expect = 0.50
Identities = 27/142 (19%), Positives = 42/142 (29%), Gaps = 47/142 (33%)
Query: 19 LHRLK-----DHHSGPNLMRRKRPDLK--PFSDPC-SPDCYMLLDGMKEKIEAEIKDEEE 70
L + K D P R+ + + P + P S LL + I
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH----LLVPASDLINK------- 441
Query: 71 QEMKKKTKLDLEEDDKMQVDDQNAVQATEVKTTKGKLSIEKQVSLDSGSGNDASSEDSND 130
DL +++ V + I V D+ G+D +
Sbjct: 442 ---------DLVKNN--------------VSFNAKDIQI--PV-YDTFDGSDLRVLSGSI 475
Query: 131 SRDLKNNIEVEPV--STTTSFS 150
S + + I PV TTT F
Sbjct: 476 SERIVDCIIRLPVKWETTTQFK 497
Score = 31.6 bits (71), Expect = 1.9
Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 12/101 (11%)
Query: 744 QNAVQATEVKTTKGKLSIEKQVSLDSGSGNDASSEDSNDSKDLKNNTEV-EPVSTTTSFS 802
+N GKL EK + ++S K L + T+ +P T +
Sbjct: 1686 ENYSAMIFETIVDGKLKTEK---IFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA 1742
Query: 803 LLGLMGHEGNNEWTGSDQSLFRAIHKVL--YNNYCAIAQVM 841
+ +G + F A H L Y ++A VM
Sbjct: 1743 AFEDLKSKGLI----PADATF-AGHS-LGEYAALASLADVM 1777
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 42.9 bits (100), Expect = 3e-04
Identities = 23/99 (23%), Positives = 34/99 (34%), Gaps = 15/99 (15%)
Query: 483 QKNEFISEYCGEIISQDEADRRGKVYDKYMCSFLFNLNNDFVVDATRK--GNKIRFANHS 540
K Y G+I +QD++ + + N +D + + N +R+ S
Sbjct: 94 PKGHIFGPYEGQISTQDKSAGF------FSWLIVDKNNRYKSIDGSDETKANWMRYVVIS 147
Query: 541 INP---NCYAKVMMVNGDHRIGIFAKRAILPGEELYFDY 576
N A RI A R I PGE L Y
Sbjct: 148 REEREQNLLA----FQHSERIYFRACRDIRPGEWLRVWY 182
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 39.2 bits (90), Expect = 0.002
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 8/33 (24%)
Query: 69 EEQEMKKKTKLDLEEDDKMQVDDQN---AVQAT 98
E+Q +KK L+ K+ DD A++AT
Sbjct: 18 EKQALKK-----LQASLKLYADDSAPALAIKAT 45
Score = 39.2 bits (90), Expect = 0.002
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 8/33 (24%)
Query: 354 EEQEMKKKTKLDLEEDDKMQVDDQN---AVQAT 383
E+Q +KK L+ K+ DD A++AT
Sbjct: 18 EKQALKK-----LQASLKLYADDSAPALAIKAT 45
Score = 39.2 bits (90), Expect = 0.002
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 8/33 (24%)
Query: 721 EEQEMKKKTKLDLEEDDKMQVDDQN---AVQAT 750
E+Q +KK L+ K+ DD A++AT
Sbjct: 18 EKQALKK-----LQASLKLYADDSAPALAIKAT 45
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural
genomics consortium, NESG, north structural genomics
consortium; NMR {Homo sapiens}
Length = 89
Score = 34.5 bits (79), Expect = 0.021
Identities = 12/70 (17%), Positives = 24/70 (34%)
Query: 811 GNNEWTGSDQSLFRAIHKVLYNNYCAIAQVMMTKTCQQVYQFAQKEAADITTEDSANDTT 870
WT + + N+ AIA+++ +KT Q F ++
Sbjct: 15 YFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNLDEILQQHK 74
Query: 871 PPRKKKKKHR 880
+K++ R
Sbjct: 75 LKMEKERNAR 84
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 37.5 bits (86), Expect = 0.024
Identities = 13/69 (18%), Positives = 16/69 (23%), Gaps = 1/69 (1%)
Query: 905 PCRHPPTQPCDASCPCVSAQNFCEKFCKCSFDCQNRFPGCRCKAQCNTKQCPCYLAVREC 964
P C A+ C C C C A+ C +
Sbjct: 160 PGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQP 219
Query: 965 -DPDLCQTC 972
DP C C
Sbjct: 220 DDPTKCVAC 228
Score = 32.1 bits (72), Expect = 1.00
Identities = 12/91 (13%), Positives = 22/91 (24%), Gaps = 2/91 (2%)
Query: 896 SSNHVHNFTPCRHPPTQPCDASCPCVSAQNFCEKFCKCSFDCQNRFPGCRCKAQCNTKQC 955
NF+ C C S + KC +C + + C
Sbjct: 249 QDWRCVNFSFC-QDLHHKCKNSRRQ-GCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLG 306
Query: 956 PCYLAVRECDPDLCQTCGADQFDVSKISCKN 986
PC + + ++ + N
Sbjct: 307 PCPKVCHLLEGEKTIDSVTSAQELRGCTVIN 337
Score = 29.4 bits (65), Expect = 6.4
Identities = 6/67 (8%), Positives = 10/67 (14%), Gaps = 6/67 (8%)
Query: 906 CRHPPTQPCDASCPCVSAQNFCEKFCKCSFDCQNRFPGCRCKAQCNTKQCPCYLAVRECD 965
+ T V + + K C
Sbjct: 125 LCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVING------QF 178
Query: 966 PDLCQTC 972
+ C T
Sbjct: 179 VERCWTH 185
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 37.0 bits (85), Expect = 0.032
Identities = 16/74 (21%), Positives = 23/74 (31%), Gaps = 6/74 (8%)
Query: 905 PCRHPPTQPCDASCPCVSAQNFCEKFCKCSFD--CQNRFPGCRCKAQCNTKQC----PCY 958
P R C C A + C D CRCK ++C +
Sbjct: 368 PERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGF 427
Query: 959 LAVRECDPDLCQTC 972
+ DP C++C
Sbjct: 428 YDLSAEDPYGCKSC 441
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion,
cleavag of basic residues, EGF-like domain,
glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A
{Homo sapiens}
Length = 510
Score = 37.1 bits (85), Expect = 0.035
Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 13/83 (15%)
Query: 918 CPCVSAQNFCEKFCKCSFDCQNRFPGCRCKAQCNTKQC-------PCYLAVRECD-PDLC 969
C C + + +C C +C K+C C AV +CD + C
Sbjct: 226 CDCGTPAECVLEGAECCKKCT-LTQDSQCSDGLCCKKCKFQPMGTVCREAVNDCDIRETC 284
Query: 970 ----QTCGADQFDVSKISCKNVS 988
C + + SC V
Sbjct: 285 SGNSSQCAPNIHKMDGYSCDGVQ 307
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 36.8 bits (84), Expect = 0.039
Identities = 18/106 (16%), Positives = 30/106 (28%), Gaps = 7/106 (6%)
Query: 882 WSVHCRKIQLKKDSSSNHVHNFTPCRHPPTQPCDASCPCVSAQNFCEKFCKCSFDCQNRF 941
WS ++ + + P T +CP + C CQ
Sbjct: 133 WSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVC 192
Query: 942 PGCRCKAQCNTKQCPCYLAVRECDPDLCQTCGADQFDVSKISCKNV 987
P CK+ T + C C + C ++C+N
Sbjct: 193 P-TICKSHGCTAEGLC------CHSECLGNCSQPDDPTKCVACRNF 231
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 35.6 bits (81), Expect = 0.089
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 12/103 (11%)
Query: 890 QLKKDSSSNHVHNFTPCR-----HPPTQPCDASCPCVSAQNFCEKFCKCSFDCQNRFPGC 944
+ S+N++ P + P T C + N C + CQ P
Sbjct: 129 LILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCP-S 187
Query: 945 RCKAQCNTKQCPCYLAVRECDPDLCQTCGADQFDVSKISCKNV 987
C + T+ C C P+ +C A D + ++C++
Sbjct: 188 TCGKRACTENNEC------CHPECLGSCSAPDNDTACVACRHY 224
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 35.2 bits (81), Expect = 0.11
Identities = 19/106 (17%), Positives = 30/106 (28%), Gaps = 10/106 (9%)
Query: 895 SSSNHVHNFTPCRHPP----TQPCDA--SCPCVSAQNFCEKFCKCSFDCQNRFPGCRCKA 948
S + H+ H T + C+K C + CQ F +A
Sbjct: 279 SLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKLCTNAVRCQ-FFTYTPAQA 337
Query: 949 QCNTKQCPCYLAV---RECDPDLCQTCGADQFDVSKISCKNVSVQR 991
CN + CYL + L G + + N +
Sbjct: 338 SCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNECTTK 383
Score = 29.8 bits (67), Expect = 5.9
Identities = 10/98 (10%), Positives = 19/98 (19%), Gaps = 5/98 (5%)
Query: 895 SSSNHVHNFTPCRHPPTQPCDASCPCVSAQNFCEKFCKCSFDCQNRFPGCRCKAQCNTKQ 954
S + F+ + P +F + C+ C T
Sbjct: 270 KKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIV--AAKSHEA--CQKLC-TNA 324
Query: 955 CPCYLAVRECDPDLCQTCGADQFDVSKISCKNVSVQRG 992
C C + + + G
Sbjct: 325 VRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHG 362
>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja
atra}
Length = 422
Score = 34.6 bits (79), Expect = 0.15
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 14/81 (17%)
Query: 918 CPCVSAQNFCEKFCKCSFDCQNRFPGCRCKAQCNTKQC-------PCYLAVRECD-PDLC 969
C C S + C+ C + C+ +C ++ ++C C A +CD P+LC
Sbjct: 231 CDCGSPAD-CQSACCNATTCK-LQHEAQCDSEECCEKCKFKGARAECRAAKDDCDLPELC 288
Query: 970 ----QTCGADQFDVSKISCKN 986
C D F + + C+N
Sbjct: 289 TGQSAECPTDVFQRNGLPCQN 309
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription
regulator complex, oxidoreductase/repressor complex,
histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens}
SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B*
2x0l_B*
Length = 235
Score = 34.4 bits (77), Expect = 0.15
Identities = 13/77 (16%), Positives = 29/77 (37%)
Query: 807 MGHEGNNEWTGSDQSLFRAIHKVLYNNYCAIAQVMMTKTCQQVYQFAQKEAADITTEDSA 866
+ + N WT +Q L + ++ AI+ V+ K+ QV F ++
Sbjct: 128 VIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVL 187
Query: 867 NDTTPPRKKKKKHRLWS 883
+ K++ + +
Sbjct: 188 QEWEAEHGKEETNGPSN 204
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.0 bits (77), Expect = 0.15
Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 58 KEKIEAEIKDEEEQEMKKKTKLDLEEDDKMQVDDQNAVQATEVKTTK 104
+E+ + +E K + + E K +++ N Q+ +V+ K
Sbjct: 91 REEQRKRL--QELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
Score = 34.0 bits (77), Expect = 0.15
Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 710 KEKIEAEIKDEEEQEMKKKTKLDLEEDDKMQVDDQNAVQATEVKTTK 756
+E+ + +E K + + E K +++ N Q+ +V+ K
Sbjct: 91 REEQRKRL--QELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
Score = 32.4 bits (73), Expect = 0.43
Identities = 9/47 (19%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 343 KEKIEAKIKDEEEQEMKKKTKLDLEEDDKMQVDDQNAVQATEVKTTK 389
+E+ ++ +E K + + E K +++ N Q+ +V+ K
Sbjct: 91 REEQRKRL--QELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
Score = 29.4 bits (65), Expect = 4.4
Identities = 8/40 (20%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 57 MKEKIEAEIKD--EEEQEMKKKTKLDLEEDDKMQVDDQNA 94
+EK + ++++ + + E +K K++ DK +A
Sbjct: 112 WREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDA 151
Score = 29.4 bits (65), Expect = 4.4
Identities = 8/40 (20%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 709 MKEKIEAEIKD--EEEQEMKKKTKLDLEEDDKMQVDDQNA 746
+EK + ++++ + + E +K K++ DK +A
Sbjct: 112 WREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDA 151
Score = 28.6 bits (63), Expect = 8.3
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 57 MKEKIEAEIKDEEEQEMKKKTKLDLEE 83
++E A EQE ++K K DLEE
Sbjct: 98 LQELDAAS--KVMEQEWREKAKKDLEE 122
Score = 28.6 bits (63), Expect = 8.3
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 709 MKEKIEAEIKDEEEQEMKKKTKLDLEE 735
++E A EQE ++K K DLEE
Sbjct: 98 LQELDAAS--KVMEQEWREKAKKDLEE 122
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain,
unliganded, autoinhibited, ATP nucleotide-binding,
tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A
{Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A
Length = 551
Score = 34.2 bits (77), Expect = 0.23
Identities = 18/99 (18%), Positives = 26/99 (26%), Gaps = 4/99 (4%)
Query: 891 LKKDSSSNHVHNFTPCRHPPTQPCDASCPCVSAQNFCEKFCKCSFDCQNRFPGCRCKAQC 950
K+ V+ S C + +C +C+N C A C
Sbjct: 455 QKEPEQKVWVNENLRADLCEKNGTICSDQCNEDGCWGAGTDQC-LNCKNFNFNGTCIADC 513
Query: 951 NTKQCPCYLAVRECDP--DLCQTCGADQFDVSKISCKNV 987
R C C+TC D C +V
Sbjct: 514 GYISNAYKFDNRTCKICHPECRTCNGAGAD-HCQECVHV 551
>3eto_A Neurogenic locus notch homolog protein 1; alpha-beta sandwich, HD
domain, LNR repeat, calcium-binding, domain,
autoinhibition, activator, T-all; 2.00A {Homo sapiens}
PDB: 3l95_X* 3i08_B 1pb5_A
Length = 242
Score = 33.6 bits (76), Expect = 0.24
Identities = 20/74 (27%), Positives = 24/74 (32%), Gaps = 15/74 (20%)
Query: 914 CDASCP----------CVSAQNFCEKFCKCSFDCQNRFPGCRCKAQCNTKQCP-----CY 958
C C C N K C S C F C +QCN+ C C
Sbjct: 19 CSLQCNNHACGWDGGDCSLNFNDPWKNCTQSLQCWKYFSDGHCDSQCNSAGCLFDGFDCQ 78
Query: 959 LAVRECDPDLCQTC 972
A +C+P Q C
Sbjct: 79 RAEGQCNPLYDQYC 92
>3i08_A Neurogenic locus notch homolog protein 1; SEA domain, LIN-12 notch
repeat, LNR, heterodimerization domain, HD, activator,
ANK repeat, calcium; 3.20A {Homo sapiens}
Length = 220
Score = 33.3 bits (75), Expect = 0.27
Identities = 20/74 (27%), Positives = 24/74 (32%), Gaps = 15/74 (20%)
Query: 914 CDASCP----------CVSAQNFCEKFCKCSFDCQNRFPGCRCKAQCNTKQCP-----CY 958
C C C N K C S C F C +QCN+ C C
Sbjct: 19 CSLQCNNHACGWDGGDCSLNFNDPWKNCTQSLQCWKYFSDGHCDSQCNSAGCLFDGFDCQ 78
Query: 959 LAVRECDPDLCQTC 972
A +C+P Q C
Sbjct: 79 RAEGQCNPLYDQYC 92
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 34.3 bits (78), Expect = 0.28
Identities = 13/107 (12%), Positives = 22/107 (20%), Gaps = 8/107 (7%)
Query: 886 CRKIQLKKDSSSNHVHNFTPCRHPPTQPCDASCPCVSAQNFCEKFCKCSFDCQNRFPGCR 945
C +++ S + C + + C CQ
Sbjct: 386 CMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQA--QAEP 443
Query: 946 CKAQCNTKQCPCYLAVRECDPDL------CQTCGADQFDVSKISCKN 986
+CN V C P C + S +
Sbjct: 444 NSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPRE 490
Score = 33.1 bits (75), Expect = 0.52
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 917 SCPCVSAQNFCEKFCKCSFDCQNRFPGCRC--KAQCNTKQCPC 957
C K+C+C R+ G C QC+ C C
Sbjct: 507 VCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGDCLC 549
Score = 31.2 bits (70), Expect = 2.1
Identities = 11/68 (16%), Positives = 14/68 (20%), Gaps = 15/68 (22%)
Query: 905 PCRHPPTQPCDASCPCVSAQ----------NFCEKFCKCSFDCQNRFPGCRCKA-----Q 949
C C C + CEK C C + CK
Sbjct: 566 TCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTCEKCPTCPDACTFKKECVECKKFDRGAL 625
Query: 950 CNTKQCPC 957
+ C
Sbjct: 626 HDENTCNR 633
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin,
metalloproteinase, C-type lectin, hydrolase, BL
clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia
russellii siamensis}
Length = 427
Score = 33.8 bits (77), Expect = 0.30
Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 14/82 (17%)
Query: 917 SCPCVSAQNFCEKFCKCSFDCQNRFPGCRCKAQCNTKQC-------PCYLAVRECD-PDL 968
C C S C+ C + C+ PG C QC C A ECD P+
Sbjct: 226 ECDCGSPA-NCQNPCCDAATCK-LKPGAECGNGLCCYQCKIKTAGTVCRRARDECDVPEH 283
Query: 969 C----QTCGADQFDVSKISCKN 986
C C DQ + C+N
Sbjct: 284 CTGQSAECPRDQLQQNGKPCQN 305
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 33.9 bits (77), Expect = 0.33
Identities = 11/70 (15%), Positives = 17/70 (24%), Gaps = 2/70 (2%)
Query: 904 TPCRHPPTQPCDASCPCVSAQNFCEKFCKCSFDCQNRFPGCRCKAQCNTKQCPCYLAVRE 963
+ +Q + SC + C C + C C
Sbjct: 461 CQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCEC--DTIN 518
Query: 964 CDPDLCQTCG 973
C+ Q CG
Sbjct: 519 CERYNGQVCG 528
Score = 32.4 bits (73), Expect = 0.84
Identities = 12/65 (18%), Positives = 17/65 (26%), Gaps = 12/65 (18%)
Query: 914 CDASCPCVSAQNFCEKFCKCSF----DCQNRFPGCRCKAQCNTKQCPCYLAVRECD---- 965
C A+CP + N K C C + Q + +
Sbjct: 621 CSAACPGLQLSNNPVKGRTCKERDSEGCWVAYTL----EQQDGMDRYLIYVDESRECVAG 676
Query: 966 PDLCQ 970
PD C
Sbjct: 677 PDGCG 681
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 33.5 bits (76), Expect = 0.34
Identities = 11/83 (13%), Positives = 17/83 (20%), Gaps = 4/83 (4%)
Query: 914 CDASCPCVSAQNFCEKFCKCSFDCQNRFPGCRCKAQCNTKQCPCYLAVRECDPDLCQTCG 973
C+ + + CKA P + PD
Sbjct: 318 CEREGIPRMTPKIVDLPDHIEVNSGKF--NPICKASGWP--LPTNEEMTLVKPDGTVLHP 373
Query: 974 ADQFDVSKISCKNVSVQRGLHKH 996
D S ++ R L
Sbjct: 374 KDFNHTDHFSVAIFTIHRILPPD 396
Score = 30.1 bits (67), Expect = 4.6
Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 6/65 (9%)
Query: 914 CDASCPCVSAQNFCEKFCKCSFDCQNRFP------GCRCKAQCNTKQCPCYLAVRECDPD 967
C+ +C + C++ C C++ GC C QC PD
Sbjct: 229 CEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPD 288
Query: 968 LCQTC 972
C
Sbjct: 289 CKLRC 293
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 33.8 bits (76), Expect = 0.38
Identities = 17/101 (16%), Positives = 23/101 (22%), Gaps = 20/101 (19%)
Query: 904 TPCRHPPTQPCDASCPCVSAQNFCEKFCKCSFD---------CQNRFPGC--RCKAQCNT 952
+H C + C + CK S D C+ FP C C
Sbjct: 40 AFFQHFQNNGSLVWCQNHKQCSKCLEPCKESGDLRKHQCQSFCEPLFPKKSYECLTSCEF 99
Query: 953 K---------QCPCYLAVRECDPDLCQTCGADQFDVSKISC 984
CP ++C D C
Sbjct: 100 LKYILLVKQGDCPAPEKASGFAAACVESCEVDNECSGVKKC 140
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 33.7 bits (76), Expect = 0.38
Identities = 17/83 (20%), Positives = 22/83 (26%), Gaps = 10/83 (12%)
Query: 901 HNFTPCRHPP--TQPCDASCPC-VSAQNFCEKFCKCSFDCQNRFPGCRCKAQCN------ 951
PC P QPC S C + + KF S C R C + C
Sbjct: 91 FGGQPCTAPLVAFQPCIPSKLCKIEEADCKNKFRCDSGRCIARKLECNGENDCGDNSDER 150
Query: 952 -TKQCPCYLAVRECDPDLCQTCG 973
+ + Q G
Sbjct: 151 DCGRTKAVCTRKYNPIPSVQLMG 173
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens}
SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Length = 293
Score = 32.8 bits (75), Expect = 0.47
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 9/47 (19%)
Query: 537 ANHSINPNCYAKVMMVNGDH-RIG----IFAKRAILPGEELYFDYRY 578
ANHS PNC + H R G I RA+ EEL Y Y
Sbjct: 244 ANHSFTPNCIYDMF----VHPRFGPIKCIRTLRAVEADEELTVAYGY 286
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase,
apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus
atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*
Length = 419
Score = 33.1 bits (75), Expect = 0.53
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 14/84 (16%)
Query: 915 DASCPCVSAQNFCEKFCKCSFDCQNRFPGCRCKAQCNTKQCP-------CYLAVRECD-P 966
C C + + C+ C + C+ G +C +QC C ++ ECD
Sbjct: 222 GEECDCGTPE-NCQNECCDAATCK-LKSGSQCGHGDCCEQCKFSKSGTECRASMSECDPA 279
Query: 967 DLC----QTCGADQFDVSKISCKN 986
+ C C AD F + C +
Sbjct: 280 EHCTGQSSECPADVFHKNGQPCLD 303
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90,
transferase-transferase inhibitor; HET: SFG; 1.80A {Mus
musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A*
3tg4_A* 3tg5_A* 3rib_A*
Length = 433
Score = 32.9 bits (74), Expect = 0.54
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 536 FANHSINPNCYAKVMMVNGDHRIGIFAKRAILPGEELYFDY 576
NHS PN + A + I PG+E++ Y
Sbjct: 204 LMNHSCCPNVIV----TYKGTLAEVRAVQEIHPGDEVFTSY 240
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding,
regulation of transcription, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Length = 72
Score = 30.1 bits (68), Expect = 0.60
Identities = 10/43 (23%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 815 WTGSDQSLF-RAIHKVLY-NNYCAIAQVMMTKTCQQVYQFAQK 855
WT ++ LF + + K + + I++++ ++T QV +A++
Sbjct: 12 WTIEEKELFEQGLAK--FGRRWTKISKLIGSRTVLQVKSYARQ 52
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 32.6 bits (73), Expect = 0.67
Identities = 19/85 (22%), Positives = 24/85 (28%), Gaps = 4/85 (4%)
Query: 891 LKKDSSSNHVHNFTPCRHPPTQPCDASCP---CVSAQNFCEKFCKCSFDCQNRFPGCRCK 947
+ D SN +F Q CD SCP C A + Q CR K
Sbjct: 144 VSSDFLSNMSMDFQNHLGS-CQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGK 202
Query: 948 AQCNTKQCPCYLAVRECDPDLCQTC 972
+ + C C C
Sbjct: 203 SPSDCCHNQCAAGCTGPRESDCLVC 227
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor
protein2, transcriptional activation, MYB domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.1
Length = 60
Score = 29.6 bits (67), Expect = 0.69
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 808 GHEGNNEWTGS-DQSLFRAIHKVLYNNYCAIAQVMMTKTCQQVYQFAQK 855
G G+ WT + +L A+ + N+ +A M TKT ++ + K
Sbjct: 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMK 52
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 32.7 bits (73), Expect = 0.78
Identities = 13/104 (12%), Positives = 26/104 (25%), Gaps = 1/104 (0%)
Query: 881 LWSVHCRKIQLKKDSSSNHVHNFTPCRHPPTQPCDASCPCVSAQNFCEKFCKCSFDCQNR 940
L + + + + + + + + T +N C+ +
Sbjct: 429 LKEISDGDVIISGNKNLCYANTINWKKLFGTSGQKTKIISNRGENKCKATGQVC-HALCS 487
Query: 941 FPGCRCKAQCNTKQCPCYLAVRECDPDLCQTCGADQFDVSKISC 984
GC + C REC G + V C
Sbjct: 488 PEGCWGPEPRDCVSCRNVSRGRECVDKCKLLEGEPREFVENSEC 531
Score = 30.0 bits (66), Expect = 4.7
Identities = 19/85 (22%), Positives = 24/85 (28%), Gaps = 4/85 (4%)
Query: 891 LKKDSSSNHVHNFTPCRHPPTQPCDASCP---CVSAQNFCEKFCKCSFDCQNRFPGCRCK 947
+ D SN +F Q CD SCP C A + Q CR K
Sbjct: 144 VSSDFLSNMSMDFQNHLGSC-QKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGK 202
Query: 948 AQCNTKQCPCYLAVRECDPDLCQTC 972
+ + C C C
Sbjct: 203 SPSDCCHNQCAAGCTGPRESDCLVC 227
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND
domain, zinc finger MYND domain-containin 1, structural
genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A*
3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Length = 429
Score = 32.5 bits (73), Expect = 0.81
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 536 FANHSINPNCYAKVMMVNGDHRIGIFAKRAILPGEELYFDY 576
NHS +PNC V + + A R I GEEL Y
Sbjct: 204 LLNHSCDPNCSI----VFNGPHLLLRAVRDIEVGEELTICY 240
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell CY
signaling protein; HET: NAG NDG; 2.40A {Homo sapiens}
PDB: 3u2p_A*
Length = 617
Score = 32.3 bits (72), Expect = 0.88
Identities = 11/83 (13%), Positives = 16/83 (19%), Gaps = 3/83 (3%)
Query: 890 QLKKDSSSNHVHNFTPCRHPPTQPCDASCPCVSAQNFCEKFCKCSFDCQNRFPGCRCKAQ 949
L + V T S+ C+ G C
Sbjct: 452 TLFSTINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSRGRICIES 511
Query: 950 CNTKQCPCYLAVRECDPDLCQTC 972
CN + +C C
Sbjct: 512 CNLYDGEFR---EFENDSICVEC 531
Score = 29.2 bits (64), Expect = 8.0
Identities = 13/108 (12%), Positives = 23/108 (21%), Gaps = 2/108 (1%)
Query: 886 CRKIQLKKDSSSNHVHNFTPCRHPPTQPCDASCPCVSAQNFCEKFCKCSFDCQNRF--PG 943
L S + + S + + + + F
Sbjct: 399 IGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGNIYITDNSNLCYYHTINWTTLFSTIN 458
Query: 944 CRCKAQCNTKQCPCYLAVRECDPDLCQTCGADQFDVSKISCKNVSVQR 991
R + N K C C+ +SC+ S R
Sbjct: 459 QRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSRGR 506
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface
receptor, immunity, signaling transferase; HET: NAG NDG;
2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1 PDB: 3p11_A*
Length = 621
Score = 31.9 bits (71), Expect = 1.1
Identities = 15/98 (15%), Positives = 26/98 (26%), Gaps = 2/98 (2%)
Query: 889 IQLKKDSSSNHVHNFTPCRHPPTQPCDASCPCVSAQNFCEKFCKCSFDCQNRFPGCRCKA 948
I + +H N+T PT+ ++ + C C + GC
Sbjct: 437 ISANRQLCYHHSLNWTKVLRGPTEERLDIKHNRPRRDCVAEGKVCDPLCSSG--GCWGPG 494
Query: 949 QCNTKQCPCYLAVRECDPDLCQTCGADQFDVSKISCKN 986
C Y C G + + C +
Sbjct: 495 PGQCLSCRNYSRGGVCVTHCNFLNGEPREFAHEAECFS 532
>1n28_B Phospholipase A2, membrane associated; hydrolase; 1.50A {Homo
sapiens} SCOP: a.133.1.2 PDB: 1n29_A 1kvo_A* 1ayp_A
1db4_A* 1db5_A* 1dcy_A* 1j1a_A* 1bbc_A* 1kqu_A* 1pod_A
1poe_A*
Length = 124
Score = 30.4 bits (68), Expect = 1.1
Identities = 13/65 (20%), Positives = 18/65 (27%), Gaps = 7/65 (10%)
Query: 907 RHPPTQPCDASCP-------CVSAQNFCEKFCKCSFDCQNRFPGCRCKAQCNTKQCPCYL 959
R P D C + + KF F C + C ++ C C
Sbjct: 33 RGSPKDATDRCCVTQDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAKQDSCRSQLCECDK 92
Query: 960 AVREC 964
A C
Sbjct: 93 AAATC 97
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 31.7 bits (72), Expect = 1.2
Identities = 11/77 (14%), Positives = 17/77 (22%), Gaps = 5/77 (6%)
Query: 896 SSNHVHNFTPCRHPPTQ---PCDASCPCVSAQNFCEKFCKCSFDCQNRFPGCRCKAQCNT 952
S + P + P P AS V C + +
Sbjct: 77 SLDKGIMADPTVNVPLLGTVPHKASVVQVGFP--CLGKQDGVAAFEVDVIVMNSEGNTIL 134
Query: 953 KQCPCYLAVRECDPDLC 969
K + + C C
Sbjct: 135 KTPQNAIFFKTCQQAEC 151
>2qhd_A Phospholipase A2; beta sheet, three helices, protein-ligand
complex, hydrolase; HET: DAO; 1.95A {Echis carinatus}
PDB: 2qhe_A 3bjw_A*
Length = 122
Score = 30.4 bits (68), Expect = 1.2
Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 5/63 (7%)
Query: 907 RHPPTQPCDASCP----CVS-AQNFCEKFCKCSFDCQNRFPGCRCKAQCNTKQCPCYLAV 961
R PP D C C + K + + +N C C + C C AV
Sbjct: 33 RGPPLDATDRCCLAHSCCYDTLPDCSPKTDRYKYKRENGEIICENSTSCKKRICECDKAV 92
Query: 962 REC 964
C
Sbjct: 93 AVC 95
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 2.51A {Homo
sapiens}
Length = 300
Score = 31.6 bits (72), Expect = 1.2
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Query: 715 AEIKDEEEQEMKKKTKLDLEEDDKMQVDDQNAVQATEV--KTTKGKLSIEKQVSLDSGSG 772
A DE+E + + L L+E+ + V+ KT + + SL +
Sbjct: 7 ALAVDEQEAAAESLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKEDRAAQSLLNKLI 66
Query: 773 NDASSEDSNDSKDLKNNTEVEPVSTTTSFSLLGL 806
+++N + L+ + P+ + SF L L
Sbjct: 67 RSNLVDNTNQVEVLQRDPN-SPLYSVKSFEELRL 99
Score = 30.8 bits (70), Expect = 2.4
Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 11/100 (11%)
Query: 348 AKIKDEEEQEMKKKTKLDLEEDDKMQVDDQNAVQATEVKTTKGKLSIEKQVSLDSGSGND 407
A DE+E + + L L+E+ + VKT +++ D + +
Sbjct: 7 ALAVDEQEAAAESLSNLHLKEEK-----IKPDTNGAVVKTNANAEKTDEEEKEDRAAQSL 61
Query: 408 ASSEDSNDSRDLKNNIEV------EPVSTTTSFSLLGLME 441
+ ++ D N +EV P+ + SF L L
Sbjct: 62 LNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKP 101
Score = 30.1 bits (68), Expect = 3.8
Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 11/98 (11%)
Query: 63 AEIKDEEEQEMKKKTKLDLEEDDKMQVDDQNAVQATEVKTTKGKLSIEKQVSLDSGSGND 122
A DE+E + + L L+E+ + VKT +++ D + +
Sbjct: 7 ALAVDEQEAAAESLSNLHLKEEK-----IKPDTNGAVVKTNANAEKTDEEEKEDRAAQSL 61
Query: 123 ASSEDSNDSRDLKNNIEV------EPVSTTTSFSLLGL 154
+ ++ D N +EV P+ + SF L L
Sbjct: 62 LNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRL 99
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 3.19A {Homo
sapiens}
Length = 479
Score = 31.5 bits (72), Expect = 1.8
Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 3/100 (3%)
Query: 709 MKEKIEAEIKDEEEQEMKKKTKLDLEEDDKMQVDDQNAVQ--ATEVKTTKGKLSIEKQVS 766
M A DE+E + + L L+E+ + V+ A KT + + S
Sbjct: 1 MATDSWALAVDEQEAAAESLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKEDRAAQS 60
Query: 767 LDSGSGNDASSEDSNDSKDLKNNTEVEPVSTTTSFSLLGL 806
L + +++N + L+ + P+ + SF L L
Sbjct: 61 LLNKLIRSNLVDNTNQVEVLQRDPN-SPLYSVKSFEELRL 99
Score = 29.2 bits (66), Expect = 9.1
Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 3/102 (2%)
Query: 342 MKEKIEAKIKDEEEQEMKKKTKLDLEEDDKMQVDDQNAVQ--ATEVKTTKGKLSIEKQVS 399
M A DE+E + + L L+E+ + V+ A KT + + S
Sbjct: 1 MATDSWALAVDEQEAAAESLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKEDRAAQS 60
Query: 400 LDSGSGNDASSEDSNDSRDLKNNIEVEPVSTTTSFSLLGLME 441
L + +++N L+ + P+ + SF L L
Sbjct: 61 LLNKLIRSNLVDNTNQVEVLQRDPN-SPLYSVKSFEELRLKP 101
>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra}
Length = 397
Score = 31.1 bits (70), Expect = 2.0
Identities = 17/80 (21%), Positives = 22/80 (27%), Gaps = 14/80 (17%)
Query: 914 CDASCPCVSAQNFCEKFCKCSFDCQNRFPGCRCKAQCNTKQ--CPCYLAVRECDPDLC-- 969
C V + C C C C A C K C +A +CD
Sbjct: 215 CGNYFVEVGEECDCGSPQACQSAC------C-NAATCQFKGAETECRVAKDDCDLPELCT 267
Query: 970 ---QTCGADQFDVSKISCKN 986
C D + C+N
Sbjct: 268 GQSAECPTDSLQRNGHPCQN 287
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3;
transcription, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 75
Score = 28.4 bits (63), Expect = 2.4
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Query: 805 GLMGHEGNNEWTGSDQSLF-RAIHK-----VLYNNYCAIAQVMMTKTCQQVYQFAQK 855
G G GN WT +Q + + K V + IA + +T +QV QK
Sbjct: 1 GSSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQK 57
>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra,
toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A
1rc9_A 1wvr_A
Length = 221
Score = 30.3 bits (68), Expect = 2.4
Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 914 CDASCPCVSAQNFCEKFCKCSFDCQNRFPGCRCKAQCN 951
C C + C+ CQ+ + C A C
Sbjct: 179 CTNPCTIYNKLTNCDSLL-KQSSCQDDWIKSNCPASCF 215
Score = 29.9 bits (67), Expect = 3.8
Identities = 10/49 (20%), Positives = 13/49 (26%), Gaps = 4/49 (8%)
Query: 912 QPCDASCPCVSAQNFCEKFCKCS---FDCQNRFPGCRCKAQCNTKQCPC 957
PC CP C C +C + C+ CP
Sbjct: 165 PPC-GDCPSACDNGLCTNPCTIYNKLTNCDSLLKQSSCQDDWIKSNCPA 212
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor,
transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP:
c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A*
1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Length = 608
Score = 31.1 bits (69), Expect = 2.4
Identities = 13/92 (14%), Positives = 25/92 (27%), Gaps = 4/92 (4%)
Query: 883 SVHCRKIQLKKDSSSNHVHNFTPCRHPPTQPCDASCPCVSAQNFCEKFCK--CSFDCQNR 940
V + + +K++ V T PC +C + C+ C +
Sbjct: 145 MVLWKDV-FRKNNQLAPVDIDTNRSRA-CPPCAPACKDNHCWGESPEDCQILTGTICTSG 202
Query: 941 FPGCRCKAQCNTKQCPCYLAVRECDPDLCQTC 972
C+ + + C C C
Sbjct: 203 CARCKGRLPTDCCHEQCAAGCTGPKHSDCLAC 234
Score = 30.7 bits (68), Expect = 3.4
Identities = 15/94 (15%), Positives = 26/94 (27%), Gaps = 9/94 (9%)
Query: 881 LWSVHCRKIQLKKDSSSNHVHNFTPCRHPPT-QPCDASCPCVSAQNFCEKFCKCSFDCQN 939
+ +V ++ + H N C++ C C +C +
Sbjct: 456 VHTVPWDQLFRNPHQALLHSGNRPEEDCGLEGLVCNSLCAHGHCWGPGPTQC---VNCSH 512
Query: 940 RFPGCRCKAQCNTKQCPCYLAVRECDPD-LCQTC 972
G C +C + RE D C C
Sbjct: 513 FLRGQECVEECRVWKGLP----REYVSDKRCLPC 542
>2oo4_A Notch 2, neurogenic locus notch homolog protein 2, HN2, notch2,
NOTC2; alpha-beta-sandwich, SEA domain, LNR, LIN12 notch
repeat, CY rich, HD domain; 2.00A {Homo sapiens}
Length = 234
Score = 30.5 bits (68), Expect = 2.6
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 20/72 (27%)
Query: 904 TPCRHPPTQPCDASCPCVSAQN-FCEKFC---KCSFD----------------CQNRFPG 943
+ P C + PC N C++ C +C FD C + F
Sbjct: 35 SLTMENPWANCSSPLPCWDYINNQCDELCNTVECLFDNFECQGNSKTCKYDKYCADHFKD 94
Query: 944 CRCKAQCNTKQC 955
C CN+++C
Sbjct: 95 NHCNQGCNSEEC 106
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase;
1.70A {Streptomyces hygroscopicus} PDB: 3t7d_A*
Length = 496
Score = 30.8 bits (70), Expect = 2.7
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 19/53 (35%)
Query: 306 HSFHTLICPNLMRRKRPDLK-------PFSDPCSPDCYM---------LLDGM 342
H + + P L+R +RPD P+ P S D + +L GM
Sbjct: 156 HDYQLVGVPALLREQRPDAPILLFVHIPW--P-SADYWRILPKEIRTGILHGM 205
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase,
transferase; HET: U2F; 2.0A {Escherichia coli} SCOP:
c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Length = 482
Score = 30.3 bits (69), Expect = 3.5
Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 17/51 (33%)
Query: 306 HSFHTLICPNLMRRKRPDLK-------PFSDPCSPDCYM-------LLDGM 342
H +H L + +R++ + + PF P +P+ + LL+ +
Sbjct: 130 HDYHLLPFAHELRKRGVNNRIGFFLHIPF--P-TPEIFNALPTYDTLLEQL 177
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease,
disintegrin, calcium-binding, ADAM, SVMP, M protein,
toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A*
2erq_A*
Length = 427
Score = 30.4 bits (68), Expect = 3.8
Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 10/60 (16%)
Query: 918 CPCVSAQNFCEKFCKCSFDCQNRFPGCRCKAQCNTKQC-------PCYLAVRECD-PDLC 969
C C S + C C + C+ G +C QC C A ECD D+C
Sbjct: 234 CDCGSPRT-CRDPCCDATTCK-LRQGAQCAEGLCCDQCRFKGAGTECRAAKDECDMADVC 291
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 30.2 bits (67), Expect = 3.8
Identities = 17/116 (14%), Positives = 29/116 (25%), Gaps = 12/116 (10%)
Query: 906 CRHPPTQPCDASCPCVSAQNFCEKFCKCSFDCQNRFPGCRCK----AQCNTKQCPCYLAV 961
C P A C + C+ CS C N G +C+ Q + C
Sbjct: 23 CLCPDGFQLVAQRRCED-IDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVG 81
Query: 962 RECDPDLCQTCGADQFDVSKISCKNVSVQRGLHKHLLMAP-------SDVAGWGIF 1010
+ + + ++ L SD++ I
Sbjct: 82 SIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMIC 137
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein
domain, chitin-binding, GERM agglutinin, chitin-binding
protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum}
PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A
9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A*
2x52_A* 1t0w_A*
Length = 171
Score = 29.6 bits (66), Expect = 3.9
Identities = 13/85 (15%), Positives = 16/85 (18%), Gaps = 5/85 (5%)
Query: 896 SSNHVHNFTPCRHPPTQPCDASCPCVSAQNFCE-KFCKCSFDCQNRFPGCRCKAQCNTKQ 954
C + C S FC C CQ+ +
Sbjct: 79 QGGPCRADIKCGSQAGGKLCPNNLCCSQWGFCGLGSEFCGGGCQSGACSTDKPCGKDAGG 138
Query: 955 CPCYLAVRECDPDLCQT----CGAD 975
C C CGA
Sbjct: 139 RVCTNNYCCSKWGSCGIGPGYCGAG 163
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine
methyltransferase, transferase, network VIA methyllysine
signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*
Length = 449
Score = 30.3 bits (67), Expect = 4.0
Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 4/77 (5%)
Query: 540 SINPNCYAKVMMVNGDHRIGIFAKRAILPGEELYFDYRYGPTEQL----KFVVTLDSNVA 595
+N + + + + A + I G E++ Y QL FV N
Sbjct: 225 ILNHLANHNANLEYSANCLRMVATQPIPKGHEIFNTYGQMANWQLIHMYGFVEPYPDNTD 284
Query: 596 NKYIYEWDFNLRSPVSA 612
+ + + +
Sbjct: 285 DTADIQMVTVREAALQG 301
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 30.2 bits (67), Expect = 4.0
Identities = 11/61 (18%), Positives = 13/61 (21%)
Query: 909 PPTQPCDASCPCVSAQNFCEKFCKCSFDCQNRFPGCRCKAQCNTKQCPCYLAVRECDPDL 968
P S C+ C+ C CR PC C
Sbjct: 128 GPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGE 187
Query: 969 C 969
C
Sbjct: 188 C 188
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 30.2 bits (67), Expect = 4.3
Identities = 9/58 (15%), Positives = 13/58 (22%), Gaps = 4/58 (6%)
Query: 901 HNFTPCRHPPTQPCDASCPCVSAQNFCEKFCKCSFDCQNRFPGCRCKAQC-NTKQCPC 957
+ P P + C N C+ C N +C C
Sbjct: 333 YQGRPWSPGSYLPIPKGAANACIPSISSIGTN---VCDNELLHCQNGGTCHNNVRCLC 387
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone
inhibitor binding, methylation, nucleosome core,
oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB:
2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Length = 482
Score = 30.3 bits (66), Expect = 4.4
Identities = 28/212 (13%), Positives = 66/212 (31%)
Query: 672 HRLKDHHSGPNLMRRKRPDLKPFSDPCSPDCYMLLDGMKEKIEAEIKDEEEQEMKKKTKL 731
+ D H+ R+ + + + + +D KE + E ++KK+
Sbjct: 240 TSVMDRHARKQKREREESEDELEEANGNNPIDIEVDQNKESKKEVPPTETVPQVKKEKHS 299
Query: 732 DLEEDDKMQVDDQNAVQATEVKTTKGKLSIEKQVSLDSGSGNDASSEDSNDSKDLKNNTE 791
++ + + + E + L S + + N+
Sbjct: 300 TQAKNRAKRKPPKGMFLSQEDVEAVSANATAATTVLRQLDMELVSVKRQIQNIKQTNSAL 359
Query: 792 VEPVSTTTSFSLLGLMGHEGNNEWTGSDQSLFRAIHKVLYNNYCAIAQVMMTKTCQQVYQ 851
E + L + + N WT +Q L + ++ AI+ V+ K+ QV
Sbjct: 360 KEKLDGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKN 419
Query: 852 FAQKEAADITTEDSANDTTPPRKKKKKHRLWS 883
F ++ + K++ + +
Sbjct: 420 FFVNYRRRFNIDEVLQEWEAEHGKEETNGPSN 451
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 29.3 bits (66), Expect = 4.7
Identities = 12/81 (14%), Positives = 17/81 (20%), Gaps = 18/81 (22%)
Query: 906 CRHPPTQ--PCDASCPCVSAQNF----CEKFCKCSFDCQNRFPGCRCKAQCNTKQCP--- 956
H + + C KFC+ D C K C
Sbjct: 3 GSHHHHHHGSIEGRSAVTCDDYYYGFGCNKFCRPRDDFFG---HYACDQN-GNKTCMEGW 58
Query: 957 ----CYLAVRECDPDLCQ-TC 972
C A+ +C
Sbjct: 59 MGPECNRAICRQGCSPKHGSC 79
>1ulk_A Lectin-C; chitin-binding protein, hevein domain, PL-C, sugar
binding protein; 1.80A {Phytolacca americana} SCOP:
g.3.1.1 g.3.1.1 g.3.1.1
Length = 126
Score = 28.6 bits (63), Expect = 5.4
Identities = 8/60 (13%), Positives = 14/60 (23%)
Query: 897 SNHVHNFTPCRHPPTQPCDASCPCVSAQNFCEKFCKCSFDCQNRFPGCRCKAQCNTKQCP 956
+ + + C C C CQ++ RC + C
Sbjct: 37 QSQCDYNRCGKEFGGKECHDELCCSQYGWCGNSDGHCGEGCQSQCSYWRCGKDFGGRLCT 96
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 29.8 bits (66), Expect = 5.4
Identities = 14/76 (18%), Positives = 16/76 (21%), Gaps = 2/76 (2%)
Query: 894 DSSSNHVHNFTPCRHPPTQPCDASCPCVSAQNFCEKFCKCSFDCQNRFPGCRCKAQCNTK 953
D S C P S C+ C+ C CR
Sbjct: 133 DGSDEASCPVLTC--GPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGD 190
Query: 954 QCPCYLAVRECDPDLC 969
PC C C
Sbjct: 191 SSPCSAFEFHCLSGEC 206
>1j2l_A Disintegrin triflavin; RGD motif, trimestatin, snake venom, toxin;
1.70A {Trimeresurus flavoviridis} SCOP: g.20.1.1 PDB:
1fvl_A 2pji_A 1n4y_A 2pjf_A 2pjg_A 1q7i_A 1q7j_A 1l3x_A
3c05_A 3c05_B
Length = 70
Score = 27.3 bits (61), Expect = 5.8
Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 12/59 (20%)
Query: 918 CPCVSAQNFCEKFCKCSFDCQNRFPGCRCKAQCNTKQC-------PCYLAVRECDPDLC 969
C C S N C C + C+ R PG +C QC C +A + D C
Sbjct: 4 CDCGSPSNPC---C-DAATCKLR-PGAQCADGLCCDQCRFKKKRTICRIARGDFPDDRC 57
>1gmz_A Phospholipase A2; hydrolase, neurotoxic; 2.4A {Bothrops pirajai}
SCOP: a.133.1.2
Length = 122
Score = 28.1 bits (62), Expect = 6.2
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 8/61 (13%)
Query: 912 QPCDASCPCVSAQNFC--------EKFCKCSFDCQNRFPGCRCKAQCNTKQCPCYLAVRE 963
P DA+ C + C K + S+ ++ C C + C C A
Sbjct: 35 GPKDATDRCCFVHDCCYGKLTSCKPKTDRYSYSRKDGTIVCGENDPCRKEICECDKAAAV 94
Query: 964 C 964
C
Sbjct: 95 C 95
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling,
asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A
{Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Length = 553
Score = 29.4 bits (66), Expect = 6.7
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 316 LMRRKRPDLKPFSDPCSPDCYMLLDGMKEKIEAKIKDEEEQEMKKK 361
R+K + FSD Y +D +KE ++ D++ + + +
Sbjct: 445 AWRQK----EQFSDGVG---YSWIDTLKEVAAQQVSDQQLETARFR 483
Score = 29.4 bits (66), Expect = 7.3
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 31 LMRRKRPDLKPFSDPCSPDCYMLLDGMKEKIEAEIKDEEEQEMKKK 76
R+K + FSD Y +D +KE ++ D++ + + +
Sbjct: 445 AWRQK----EQFSDGVG---YSWIDTLKEVAAQQVSDQQLETARFR 483
Score = 29.4 bits (66), Expect = 7.3
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 683 LMRRKRPDLKPFSDPCSPDCYMLLDGMKEKIEAEIKDEEEQEMKKK 728
R+K + FSD Y +D +KE ++ D++ + + +
Sbjct: 445 AWRQK----EQFSDGVG---YSWIDTLKEVAAQQVSDQQLETARFR 483
>3n71_A Histone lysine methyltransferase SMYD1; heart development,
transcription; HET: SFG MES; 2.30A {Mus musculus}
Length = 490
Score = 29.5 bits (65), Expect = 7.0
Identities = 16/48 (33%), Positives = 18/48 (37%), Gaps = 9/48 (18%)
Query: 538 NHSINPNCY---------AKVMMVNGDHRIGIFAKRAILPGEELYFDY 576
NH PNC A M + RI + A I GEEL Y
Sbjct: 205 NHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSY 252
>2g58_A Phospholipase A2 VRV-PL-VIIIA; phospholipase A2, diars,
hydrolase-hydrolase inhibitor compl; HET: PHQ; 0.98A
{Daboia russellii pulchella} SCOP: a.133.1.2 PDB: 1cl5_A
1fb2_A* 1jq8_A 1jq9_A 1kpm_A* 1oxl_A* 1fv0_A* 1q7a_A
1skg_A* 1sv3_A* 1sv9_A* 1sxk_A* 1tdv_A 1tg1_A* 1tg4_A
1th6_A* 1sqz_A 1tjq_A* 1tk4_A 1tp2_A* ...
Length = 121
Score = 28.1 bits (62), Expect = 7.1
Identities = 13/63 (20%), Positives = 17/63 (26%), Gaps = 5/63 (7%)
Query: 907 RHPPTQPCDASCP----CVSAQNFC-EKFCKCSFDCQNRFPGCRCKAQCNTKQCPCYLAV 961
+ P D C C C K + + N C C + C C A
Sbjct: 33 KGTPKDATDRCCFVHDCCYGNLPDCNPKSDRYKYKRVNGAIVCEKGTSCENRICECDKAA 92
Query: 962 REC 964
C
Sbjct: 93 AIC 95
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding,
NPPSFA, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus}
Length = 75
Score = 26.9 bits (59), Expect = 7.1
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 9 CRRCYKYDCFLHRLKDHHSGPNL----MRRKRPDLKPFSDPCS 47
C C C HR KD H + R K + K +S P S
Sbjct: 32 CDGCSGIFCLEHRSKDSHGCSEVNVVKERPKTDEHKSYSGPSS 74
>1mc2_A Acutohaemonlysin, phospholipase A2; YS49-phospholipase A2, snake
venom, toxin; 0.85A {Deinagkistrodon acutus} SCOP:
a.133.1.2 PDB: 1mg6_A 1pa0_A 3i03_A* 3hzd_A 3hzw_A*
3cxi_A* 3i3h_A 3i3i_A 1pc9_A 2q2j_A 3cyl_A* 1qll_A*
1xxs_A* 3qnl_A* 2ok9_A* 3iq3_A* 2h8i_A* 3mlm_A* 1y4l_A*
1clp_A* ...
Length = 122
Score = 28.1 bits (62), Expect = 7.4
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 8/61 (13%)
Query: 912 QPCDASCPCVSAQNFC--------EKFCKCSFDCQNRFPGCRCKAQCNTKQCPCYLAVRE 963
+P DA+ C C K + S+ +N+ C C + C C A
Sbjct: 35 EPLDATDRCCFVHKCCYKKLTDCDSKKDRYSYKWKNKAIVCGKNQPCMQEMCECDKAFAI 94
Query: 964 C 964
C
Sbjct: 95 C 95
>3smt_A Histone-lysine N-methyltransferase SETD3; histone
methyltransferase, histone modification, LYSI
translational modification, structural genomics; HET:
SAM; 2.04A {Homo sapiens}
Length = 497
Score = 29.4 bits (65), Expect = 7.8
Identities = 12/79 (15%), Positives = 23/79 (29%), Gaps = 5/79 (6%)
Query: 536 FANHSINPNCYAKVMMVNGDHRIGIFAKRAILPGEELYFDYRYGPTEQLKFV--VTLDSN 593
NH+ D R A + GE++Y Y + D+N
Sbjct: 275 MCNHTNGLIT---TGYNLEDDRCECVALQDFRAGEQIYIFYGTRSNAEFVIHSGFFFDNN 331
Query: 594 VANKYIYEWDFNLRSPVSA 612
++ + + + A
Sbjct: 332 SHDRVKIKLGVSKSDRLYA 350
>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin;
1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A
Length = 210
Score = 28.7 bits (64), Expect = 8.2
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 8/51 (15%)
Query: 909 PPTQPCDASCP---CVSAQNFCEKFCKC-----SFDCQNRFPGCRCKAQCN 951
PP C ++C C + N+ F C CQ + +C A C
Sbjct: 154 PPCADCPSACVNRLCTNPCNYNNDFSNCKSLAKKSKCQTEWIKKKCPASCF 204
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 28.8 bits (65), Expect = 8.9
Identities = 9/50 (18%), Positives = 13/50 (26%), Gaps = 14/50 (28%)
Query: 894 DSSSNHVHNFTPCRHPPTQPCDASCPCVSAQNFCEKFCKCS---FDCQNR 940
S +F P +P CP C+C C +
Sbjct: 3 ASGIGPEEHFPEV--PEIEPMGPVCPFR---------CQCHLRVVQCSDL 41
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.394
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,457,143
Number of extensions: 935224
Number of successful extensions: 3082
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2728
Number of HSP's successfully gapped: 297
Length of query: 1048
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 945
Effective length of database: 3,825,930
Effective search space: 3615503850
Effective search space used: 3615503850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.0 bits)