RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13861
(1048 letters)
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific
methyltransferase SET7/9 catalytic domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 171
Score = 95.6 bits (237), Expect = 3e-23
Identities = 26/108 (24%), Positives = 39/108 (36%), Gaps = 5/108 (4%)
Query: 476 MMTKTCQQKNEFISEYCGEIISQDEADRRGKVYDKYMCS----FLFNLNNDFVVDATRKG 531
+ +K N +S Y G I+ E D R + S + ++ + +
Sbjct: 37 LFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGNTLSLDEETVIDVPEPYNHVSKYCA 96
Query: 532 NKIRFANHSINPNC-YAKVMMVNGDHRIGIFAKRAILPGEELYFDYRY 578
+ ANHS PNC Y + I RA+ EEL Y Y
Sbjct: 97 SLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGY 144
Score = 54.4 bits (130), Expect = 6e-09
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 980 SKISCKNVSVQRGLHKHLLMAPSDV--AGWGIFLKDSAQKNEFISEYCGEIISQDEADRR 1037
S IS + + + +A S + AG G+F K + N +S Y G I+ E D R
Sbjct: 6 SCISTNALLPDPYESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSR 65
Query: 1038 GKVYDKYMCSF 1048
+ S
Sbjct: 66 DWALNGNTLSL 76
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 269
Score = 90.6 bits (224), Expect = 1e-20
Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 9/115 (7%)
Query: 475 VMMTKTCQQKNEFISEYCGEIISQDEADRRGKVYDKYMCSFLFNL-----NNDFVVDATR 529
+ + FI+ Y GE+I+ EA +R K YD ++LF+L +++ VDA
Sbjct: 149 GVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYDDDGITYLFDLDMFDDASEYTVDAQN 208
Query: 530 KGNKIRFANHSINPNCYAKVMMVNGD----HRIGIFAKRAILPGEELYFDYRYGP 580
G+ RF NHS +PN + N + + FA + I P EEL FDY
Sbjct: 209 YGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAK 263
Score = 67.1 bits (163), Expect = 1e-12
Identities = 34/148 (22%), Positives = 53/148 (35%), Gaps = 13/148 (8%)
Query: 903 FTPCRHPPTQPCDASCPCVSAQNFCEKFCKCSFDCQNRFP-GCRCKAQCNTK-QCPCYLA 960
T PP + C C S+ C+ +C + + +
Sbjct: 53 LTQGVIPPDPNFQSGCNC-SSLGGCDLNNPSRCECLDDLDEPTHFAYDAQGRVRADTGAV 111
Query: 961 VRECDPDLCQTCGADQFDVSKISCKNVSVQRGLHKHLLMAPSDVAGWGIFLKDSAQKNEF 1020
+ EC+ +C C N VQRG L + + GWG+ A F
Sbjct: 112 IYECNS--FCSCSM--------ECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTF 161
Query: 1021 ISEYCGEIISQDEADRRGKVYDKYMCSF 1048
I+ Y GE+I+ EA +R K YD ++
Sbjct: 162 ITCYLGEVITSAEAAKRDKNYDDDGITY 189
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId:
5141]}
Length = 284
Score = 90.4 bits (223), Expect = 2e-20
Identities = 29/141 (20%), Positives = 50/141 (35%), Gaps = 14/141 (9%)
Query: 906 CRHPPTQPCDASCPCVSAQNFCEKFCKCSFDCQNRFPGCRCKAQCNTKQCPCY---LAVR 962
C + ++C C+ + + RF A+ + +
Sbjct: 44 CASD-EECMYSTCQCLDEMAPDSDEEADPYTRKKRFAYYSQGAKKGLLRDRVLQSQEPIY 102
Query: 963 ECDPDLCQTCGADQFDVSKISCKNVSVQRGLHKHLLMAPSDVAGWGIFLKDSAQKNEFIS 1022
EC C + C N V+RG L + + GWG+ + ++ +F+
Sbjct: 103 ECHQ----GCACSK------DCPNRVVERGRTVPLQIFRTKDRGWGVKCPVNIKRGQFVD 152
Query: 1023 EYCGEIISQDEADRRGKVYDK 1043
Y GEII+ +EADRR
Sbjct: 153 RYLGEIITSEEADRRRAESTI 173
Score = 77.7 bits (190), Expect = 4e-16
Identities = 34/117 (29%), Positives = 49/117 (41%), Gaps = 20/117 (17%)
Query: 483 QKNEFISEYCGEIISQDEADRRGKVY--DKYMCSFLFNLNN--------------DFVVD 526
++ +F+ Y GEII+ +EADRR + +LF L+ VD
Sbjct: 146 KRGQFVDRYLGEIITSEEADRRRAESTIARRKDVYLFALDKFSDPDSLDPLLAGQPLEVD 205
Query: 527 ATRKGNKIRFANHSINPNCYAKVMMVN----GDHRIGIFAKRAILPGEELYFDYRYG 579
RF NHS +PN + + H + +FA + I G EL FDY G
Sbjct: 206 GEYMSGPTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNG 262
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27
Methyltransferase {Paramecium bursaria chlorella virus
1, PBCV-1 [TaxId: 10506]}
Length = 119
Score = 55.6 bits (133), Expect = 6e-10
Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 13/99 (13%)
Query: 478 TKTCQQKNEFISEYCGEIISQDEADRRGKVYDKYMCSFLFNLNNDFVVDATRKGNKIRFA 537
+ +K E + E + D+ + +LF+ N +
Sbjct: 20 ARKSFEKGELVEECLCIVRHNDDWGTA-------LEDYLFSRKNMSAMA----LGFGAIF 68
Query: 538 NHSINPNCYAKVMMVNGDHRIGIFAKRAILPGEELYFDY 576
NHS +PN ++ G R+ IF + I GEE+ Y
Sbjct: 69 NHSKDPNARHEL--TAGLKRMRIFTIKPIAIGEEITISY 105
Score = 34.0 bits (77), Expect = 0.020
Identities = 9/45 (20%), Positives = 21/45 (46%)
Query: 993 LHKHLLMAPSDVAGWGIFLKDSAQKNEFISEYCGEIISQDEADRR 1037
+ +++ S + G+G+F + S +K E + E + D+
Sbjct: 2 FNDRVIVKKSPLGGYGVFARKSFEKGELVEECLCIVRHNDDWGTA 46
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo
sapiens) [TaxId: 9606]}
Length = 65
Score = 29.8 bits (67), Expect = 0.19
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 812 NNEWTGSDQSLFRAIHKVLYNNYCAIAQVMMTKTCQQVYQFAQK 855
N WT +Q L + ++ AI+ V+ K+ QV F
Sbjct: 5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVN 48
>d2h9ec1 g.22.1.1 (C:6-83) Anticoagulant protein {Dog hookworm
(Ancylostoma caninum) [TaxId: 29170]}
Length = 78
Score = 29.2 bits (65), Expect = 0.41
Identities = 7/55 (12%), Positives = 15/55 (27%), Gaps = 9/55 (16%)
Query: 913 PCDASCPCVSAQNFCEKFCKCSFDCQNRFPGCRCK--------AQC-NTKQCPCY 958
CD C + ++ + C C+ +C + + C
Sbjct: 14 ECDKKCKYDGVEEEDDEEPNVPCLVRVCHQDCVCEEGFYRNKDDKCVSAEDCELD 68
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 68
Score = 28.3 bits (63), Expect = 0.67
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 813 NEWTGSDQSLFRAIHKVLYNNYCAIAQVMMTKTCQQVYQF 852
N W+ ++ FR N+ IA + KT + +
Sbjct: 18 NMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLY 57
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 28.3 bits (63), Expect = 0.85
Identities = 9/41 (21%), Positives = 21/41 (51%)
Query: 815 WTGSDQSLFRAIHKVLYNNYCAIAQVMMTKTCQQVYQFAQK 855
WT ++ LF + I++++ ++T QV +A++
Sbjct: 5 WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQ 45
>d2cvca1 a.138.1.1 (A:40-544) 16-heme cytochrome c HmcA
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 505
Score = 29.7 bits (64), Expect = 2.1
Identities = 12/159 (7%), Positives = 22/159 (13%), Gaps = 2/159 (1%)
Query: 827 HKVLYNNYCAIAQVMMTKTCQQVYQFAQKEAADITTEDSANDTTPPRKKKKKHRLWSVHC 886
H V Q+ + + + K K C
Sbjct: 284 HTVNGTADSKFVQLEKAMHQPDSMRSCVGCHNTRVQQPTCAGCHGFIKPTKSDA-QCGVC 342
Query: 887 RKIQLKKDSSSNHVHNFTPCRHPPTQPCDASCPCVSAQNFCEKFCKCSFDCQNRFPGCRC 946
D+ + AS Q + +
Sbjct: 343 HVAAPGFDAKQVEAGALLNLKAEQRSQVAASMLSARPQPKGTFDLNDIPEKVVIGSIAKE 402
Query: 947 KAQCNTKQCPCYLAVRE-CDPDLCQTCGADQFDVSKISC 984
+ D + C
Sbjct: 403 YQPSEFPHRKIVKTLIAGIGEDKLAATFHIEKGTLCQGC 441
>d1vfia1 g.84.1.1 (A:4-95) Vanadium-binding protein 2, vanabin 2
{Vanadium-rich ascidian (Ascidia sydneiensis samea)
[TaxId: 79730]}
Length = 92
Score = 27.4 bits (60), Expect = 2.8
Identities = 8/53 (15%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Query: 886 CRKIQLKKDSSSNHVHNFTPCRHPPTQPCDASCPCVSAQNFCEKFCKCSFDCQ 938
+K + ++ C C +C + + C K S C+
Sbjct: 33 DKKTCRRNCKKADCEPQDKVCD-ACRMKCHKACRAANCASECPKHEHKSDTCR 84
>d1bjja_ a.133.1.2 (A:) Snake phospholipase A2 {Snake (Agkistrodon
halys) [TaxId: 8714]}
Length = 122
Score = 27.2 bits (60), Expect = 4.4
Identities = 11/54 (20%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
Query: 912 QPCDASCPCVSAQNFC-EKFCKCSFDCQNRFPGCRCKAQCNTKQCPCYLAVREC 964
+ C C C K S+ + + C C + C C EC
Sbjct: 42 RCCFVHDCCYGRLVNCNTKSDIYSYSLKEGYITCGKGTNCEEQICECDRVAAEC 95
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome
remodeling ATPase ISWI {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 52
Score = 25.8 bits (57), Expect = 4.7
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 815 WTGSD-QSLFRAIHKVLYNNYCAIAQVMMTKTCQQVYQFAQ 854
WT D +A K ++ IA+ + KT ++V ++
Sbjct: 2 WTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNA 42
>d1zlba1 a.133.1.2 (A:1-122) Snake phospholipase A2 {Jararacussu
(Bothrops jararacussu) [TaxId: 8726]}
Length = 122
Score = 27.2 bits (60), Expect = 5.3
Identities = 10/54 (18%), Positives = 15/54 (27%), Gaps = 1/54 (1%)
Query: 912 QPCDASCPCVSAQNFCE-KFCKCSFDCQNRFPGCRCKAQCNTKQCPCYLAVREC 964
+ C C C K ++ +N C C + C C C
Sbjct: 42 RCCFVHDCCYGKVTGCNPKIDSYTYSKKNGDVVCGGDNPCKKQICECDRVATTC 95
>d1mc2a_ a.133.1.2 (A:) Snake phospholipase A2 {Hundred-pace snake
(Agkistrodon acutus) [TaxId: 36307]}
Length = 122
Score = 27.2 bits (60), Expect = 5.5
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 912 QPCDASCPCVSAQNFCE-KFCKCSFDCQNRFPGCRCKAQCNTKQCPCYLAVREC 964
+ C C C+ K + S+ +N+ C C + C C A C
Sbjct: 42 RCCFVHKCCYKKLTDCDSKKDRYSYKWKNKAIVCGKNQPCMQEMCECDKAFAIC 95
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden
pea (Pisum sativum) [TaxId: 3888]}
Length = 261
Score = 28.0 bits (61), Expect = 5.6
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 7/48 (14%)
Query: 536 FANHSINPNCYA-------KVMMVNGDHRIGIFAKRAILPGEELYFDY 576
NHS + + D+ + + ++ GE++Y Y
Sbjct: 191 LINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQY 238
>d2g58a1 a.133.1.2 (A:1-133) Snake phospholipase A2 {Snake (Daboia
russellii pulchella), different isoforms [TaxId: 97228]}
Length = 121
Score = 26.8 bits (59), Expect = 6.2
Identities = 11/53 (20%), Positives = 14/53 (26%), Gaps = 1/53 (1%)
Query: 913 PCDASCPCVSAQNFCE-KFCKCSFDCQNRFPGCRCKAQCNTKQCPCYLAVREC 964
C C C K + + N C C + C C A C
Sbjct: 43 CCFVHDCCYGNLPDCNPKSDRYKYKRVNGAIVCEKGTSCENRICECDKAAAIC 95
>d1jltb_ a.133.1.2 (B:) Snake phospholipase A2 {Sand viper (Vipera
ammodytes meridionalis), vipoxin catalytic subunit
[TaxId: 8704]}
Length = 122
Score = 26.8 bits (59), Expect = 6.4
Identities = 9/54 (16%), Positives = 12/54 (22%), Gaps = 1/54 (1%)
Query: 912 QPCDASCPCVSAQNFCEKFCKC-SFDCQNRFPGCRCKAQCNTKQCPCYLAVREC 964
+ C C C S+ + C C C C C
Sbjct: 42 RCCFVHDCCYGRVRGCNPKLAIYSYSFKKGNIVCGKNNGCLRDICECDRVAANC 95
>d1p2za1 b.121.2.2 (A:5-650) Adenovirus hexon {Human adenovirus type
2 [TaxId: 10515]}
Length = 646
Score = 28.2 bits (63), Expect = 7.2
Identities = 10/46 (21%), Positives = 16/46 (34%)
Query: 579 GPTEQLKFVVTLDSNVANKYIYEWDFNLRSPVSATILFGNMRAMEI 624
G T+ + + + + W + I GN AMEI
Sbjct: 428 GVTDTYQAIKANGNGSGDNGDTTWTKDETFATRNEIGVGNNFAMEI 473
>d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand
binding core {Rat (Rattus norvegicus), GluR5 [TaxId:
10116]}
Length = 246
Score = 27.5 bits (59), Expect = 9.3
Identities = 22/238 (9%), Positives = 58/238 (24%), Gaps = 19/238 (7%)
Query: 810 EGNNEWTGSDQSLFRAIHKVLYNNYCAIAQVMMTKTCQQVYQFAQKEAADITTEDSANDT 869
GN+ + G L + + +L Y V + + N
Sbjct: 23 YGNDRFEGYCLDLLKELSNILGFLY-------------DVKLVPDGKYGAQNDKGEWNGM 69
Query: 870 TPPRKKKKKHRLWSVHCRKIQLKKDSSSNHVHNFTPCRHPPTQPCDASCPCVSAQNFCEK 929
+ + +K + +P D++
Sbjct: 70 VKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKPIDSADDLAKQTKIEYG 129
Query: 930 FCKCSF---DCQNRFPGCRCKAQCNTKQCPCYLAVRECDPDLCQTCGADQFDVSKISCKN 986
+ + K V+ D + + D + + +
Sbjct: 130 AVRDGSTMTFFKKSKISTYEKMWAFMSSRQQSALVKNSDEGIQRVLTTDYALLMESTSIE 189
Query: 987 VSVQRGLHKHLLMAPSDVAGWGIFLKDSAQKNEFISEYCGEIISQDEADRRGKVYDKY 1044
QR + + D G+G+ + + I+ ++ + + + +K+
Sbjct: 190 YVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLH---MMKEKW 244
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.131 0.394
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,846,038
Number of extensions: 189437
Number of successful extensions: 905
Number of sequences better than 10.0: 1
Number of HSP's gapped: 805
Number of HSP's successfully gapped: 79
Length of query: 1048
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 953
Effective length of database: 1,103,246
Effective search space: 1051393438
Effective search space used: 1051393438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.3 bits)