Query psy13863
Match_columns 261
No_of_seqs 114 out of 217
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 22:20:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13863.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13863hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3224|consensus 100.0 1.2E-88 2.6E-93 610.0 13.3 241 4-261 29-278 (278)
2 PF04176 TIP41: TIP41-like fam 100.0 3.5E-83 7.6E-88 556.7 15.6 175 57-231 1-181 (182)
3 PF08332 CaMKII_AD: Calcium/ca 26.4 2E+02 0.0044 24.0 5.8 61 150-215 47-117 (128)
4 PF05820 DUF845: Baculovirus p 23.1 82 0.0018 26.4 2.7 30 168-197 24-54 (119)
5 PRK02234 recU Holliday junctio 21.7 33 0.00071 30.9 0.2 61 121-188 79-144 (195)
6 cd04094 selB_III This family r 19.8 2.4E+02 0.0052 21.5 4.7 58 147-222 30-88 (97)
7 PF09654 DUF2396: Protein of u 19.2 99 0.0021 26.9 2.6 80 73-163 67-161 (161)
8 TIGR00648 recU recombination p 18.8 45 0.00097 29.4 0.4 60 121-187 56-120 (169)
9 KOG3224|consensus 15.9 62 0.0014 30.5 0.7 27 1-27 9-35 (278)
10 KOG0436|consensus 15.0 94 0.002 31.8 1.7 20 48-68 323-342 (578)
No 1
>KOG3224|consensus
Probab=100.00 E-value=1.2e-88 Score=610.03 Aligned_cols=241 Identities=44% Similarity=0.732 Sum_probs=218.3
Q ss_pred cCCeEEEcCeEEEEeeccccccCCCCCCCCCCCcccchhhhhhhhcCCCCCCceeeCCcEEEEEecCceeEEEchhhhHh
Q psy13863 4 KCESYEIELWKINASTSHILASQCSELPDCDKSNSECDFCRYSTKLKIPHLPEMVFAGNILKLSHAGGCSLEFNAFDALS 83 (261)
Q Consensus 4 ~~~~~~~~~W~i~~~k~pIL~s~~~~~~~~~~~~~~~~l~~~~~~L~lp~lPEMvFg~N~l~i~h~~g~~i~Fna~DAL~ 83 (261)
+.+.++++.|+|.+.++|||+|.| +|.|+.+|.++++||||||+|+|+|+|..+.+|+|||+|||+
T Consensus 29 ~~~k~s~~~~t~k~~~~~il~s~e--------------l~~~q~elk~~~~PeMvFg~N~l~ie~~~~~sieFna~DALk 94 (278)
T KOG3224|consen 29 KQDKFSFKYWTIKSQRGSILKSHE--------------LENLQSELKGFPLPEMVFGNNYLVIEHKNQPSIEFNALDALK 94 (278)
T ss_pred cCcCccccceEEEecccchhhHHH--------------HHHHHHhhcCCCCcceeecccEEEEEeCCCCceeecHHHHHH
Confidence 346678888899999999999877 446778888888999999999999999986699999999999
Q ss_pred hhhcCCC-ceeechhHHHhhcCcCCCCCCccccceeeeeecCcCCcccCCceeecC---cccCChhhhcCcCccccceec
Q psy13863 84 SVIVGEM-PLQIACSEAWKSSRRSTGFTESHIHPFDWTYSTDYAGTLVGDWAIEKT---SLQIDLEKLKQREKIHFYQDL 159 (261)
Q Consensus 84 ~v~~~~~-~~kVa~A~~W~~sr~~~~~~~~~~kpfDWTytT~Y~Gt~~~~~~~~~t---~~~I~~~kL~~~dpILF~~ev 159 (261)
+|.++.. +++||||+.|+++|..+ ...++++||||||||+|+||.++ ....+| +..||++||+++|+||||+|+
T Consensus 95 ~V~~~~~~~veV~~a~~W~~sr~~~-~~~~vi~pfDWTyTT~YqGT~~~-~~~k~t~e~~~~~pl~kL~~~e~ILFy~ei 172 (278)
T KOG3224|consen 95 MVGTKPLPPVEVAAAKDWAKSRKKQ-EEYEVIKPFDWTYTTDYQGTEQR-PNAKFTTEIDQNIPLQKLLNREQILFYDEI 172 (278)
T ss_pred HhccCCCCCeEeehhHHHHHhccch-hhhccccCccceEecccccceec-cccccccchhccchHHHHhcccCeeeecce
Confidence 9999854 49999999999999986 34689999999999999999987 344443 556888999999999999999
Q ss_pred eeeccccCCCceEEEEEEEEEcCchHhhhheeeeeecceEEEEeeeeEEEEcCCCeEEEEeeeeecccccc--cCC---C
Q psy13863 160 ILYEDELHDNGIAKCSVKIRVMSSGFFILLRFFLRVDDVLVRMNDTRLYHEYKNNFVLREISTRQASVKEL--RIP---Q 234 (261)
Q Consensus 160 ~LfEDEL~DnG~s~lsVKiRVMp~~~fvL~RffLRVD~VlvRi~DTRiyhef~~~~viRE~~~rE~~~~~l--~~~---~ 234 (261)
+||||||||||||+|+|||||||++||||+|||||||+||+|++|||||++|++++|||||+.|||+|.+| +.| .
T Consensus 173 iLFEDELADnGiS~l~VrvRVM~~~~flLlRf~lRVD~VLvRl~dTRi~~~~~~d~vlrE~~~rEA~y~~l~~~~~~~~~ 252 (278)
T KOG3224|consen 173 ILFEDELADNGISMLDVRVRVMPGHLFLLLRFFLRVDKVLVRLNDTRIYIEFLNDFVLRECRKREATYQKLIAKIPVGGD 252 (278)
T ss_pred eeehhhhhhCCceeEEEEEEEecccchHHHHHHhhccceEEEEeccEEEEEecCCcchhhHHhhhcchhhhhccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 444 3
Q ss_pred CCCCCchhhhhhcCCceeeeeeeeecC
Q psy13863 235 SMISDEEPNLVNMLPLIKSETHKLMFQ 261 (261)
Q Consensus 235 ~~~~D~~n~v~~~Lpv~~~~~ekl~~~ 261 (261)
+++.|| ||++++||+++++++||.|+
T Consensus 253 ~~l~D~-~~~se~lPvv~~~~~kl~f~ 278 (278)
T KOG3224|consen 253 KLLDDP-NWLSERLPVVKHQIYKLNFK 278 (278)
T ss_pred ccccCc-HHHHhhCchhhhheeeeccC
Confidence 579999 99999999999999999985
No 2
>PF04176 TIP41: TIP41-like family ; InterPro: IPR007303 The TOR signalling pathway activates a cell-growth program in response to nutrients []. TIP41 interacts with TAP42 and negatively regulates the TOR signalling pathway [].
Probab=100.00 E-value=3.5e-83 Score=556.67 Aligned_cols=175 Identities=52% Similarity=0.878 Sum_probs=167.1
Q ss_pred eeeCCcEEEEEec-CceeEEEchhhhHhhhhcCCC-ceeechhHHHhhcCcCCC-CCCccccceeeeeecCcCCcccCC-
Q psy13863 57 MVFAGNILKLSHA-GGCSLEFNAFDALSSVIVGEM-PLQIACSEAWKSSRRSTG-FTESHIHPFDWTYSTDYAGTLVGD- 132 (261)
Q Consensus 57 MvFg~N~l~i~h~-~g~~i~Fna~DAL~~v~~~~~-~~kVa~A~~W~~sr~~~~-~~~~~~kpfDWTytT~Y~Gt~~~~- 132 (261)
||||||.|+|+|. +||+|+|||+|||++|+++.. ++|||||++|+++|.+.. .+.++.|||||||||+|+||+.+.
T Consensus 1 MvFg~N~l~l~h~~sg~~i~Fna~DAL~~v~~~~~~~vkV~~a~~W~~sr~~~~~~~~~~~k~~DWTytT~Y~Gt~~~~~ 80 (182)
T PF04176_consen 1 MVFGNNFLRLEHEKSGWSIEFNALDALKLVDKTDDPQVKVAYAKEWKKSRKENEEEIKEVVKPYDWTYTTNYKGTVSGDS 80 (182)
T ss_pred CCCCCCEEEEEEcCCCcEEEEcHHHHHHhhhhcCCCceEEehhhhhhhhccccccccccccccccccccCcccCcccCcc
Confidence 9999999999995 599999999999999999887 499999999999999764 566899999999999999999863
Q ss_pred --ceeecCcccCChhhhcCcCccccceeceeeccccCCCceEEEEEEEEEcCchHhhhheeeeeecceEEEEeeeeEEEE
Q psy13863 133 --WAIEKTSLQIDLEKLKQREKIHFYQDLILYEDELHDNGIAKCSVKIRVMSSGFFILLRFFLRVDDVLVRMNDTRLYHE 210 (261)
Q Consensus 133 --~~~~~t~~~I~~~kL~~~dpILF~~ev~LfEDEL~DnG~s~lsVKiRVMp~~~fvL~RffLRVD~VlvRi~DTRiyhe 210 (261)
+.+++|+++||+++|+++||||||+|++||||||||||+|+|||||||||+|||||+|||||||||+|||+|||+||+
T Consensus 81 ~~~~~~~t~~~I~~~~L~~~dpIlFy~ev~LfEDEL~DnGis~lsVKiRVMp~~~flL~RffLRVD~Vl~Ri~DTRiy~~ 160 (182)
T PF04176_consen 81 PSPEWEPTDERIPLEKLKRRDPILFYDEVILFEDELADNGISILSVKIRVMPSCFFLLLRFFLRVDGVLVRIRDTRIYHE 160 (182)
T ss_pred cCcccCCCccccCHHHhCCCCceeehhheeeehhhcCCCceEEEEEEEEECCceeeeeeeeeEEECCEEEEEEEEEEEEE
Confidence 688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEeeeeeccccccc
Q psy13863 211 YKNNFVLREISTRQASVKELR 231 (261)
Q Consensus 211 f~~~~viRE~~~rE~~~~~l~ 231 (261)
||+++|||||+.||++|++|+
T Consensus 161 f~~~~viRE~~~rE~~~~~l~ 181 (182)
T PF04176_consen 161 FGSNYVIREYTWREATYDDLK 181 (182)
T ss_pred CCCCeEEEEEEeeeccHHHhh
Confidence 999999999999999999883
No 3
>PF08332 CaMKII_AD: Calcium/calmodulin dependent protein kinase II Association; InterPro: IPR013543 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain is found at the C terminus of the Calcium/calmodulin dependent protein kinases II (CaMKII). These proteins also have a Ser/Thr protein kinase domain (IPR000719 from INTERPRO) at their N terminus []. The function of the CaMKII association domain is the assembly of the single proteins into large (8 to 14 subunits) multimers [] and is a prominent kinase in the central nervous system that may function in long-term potentiation and neurotransmitter release. ; GO: 0004683 calmodulin-dependent protein kinase activity, 0005516 calmodulin binding, 0006468 protein phosphorylation; PDB: 2W2C_F 3H51_B 3SOA_A 2UX0_A 1HKX_M 2F86_B.
Probab=26.39 E-value=2e+02 Score=23.96 Aligned_cols=61 Identities=20% Similarity=0.295 Sum_probs=39.8
Q ss_pred cCccccceeceeeccccCCCceE----EEEEEEEEcCc-h-Hhhhheeeeeec--ceE--EEEeeeeEEEEcCCCe
Q psy13863 150 REKIHFYQDLILYEDELHDNGIA----KCSVKIRVMSS-G-FFILLRFFLRVD--DVL--VRMNDTRLYHEYKNNF 215 (261)
Q Consensus 150 ~dpILF~~ev~LfEDEL~DnG~s----~lsVKiRVMp~-~-~fvL~RffLRVD--~Vl--vRi~DTRiyhef~~~~ 215 (261)
.+-|.|| ||.-|+-++.. +++=+||++.. . .-.=.|-|--+| |+. ++.+.||+|+.+|..-
T Consensus 47 ~~~~~~Y-----F~~~l~~~~~~~~~tI~~p~V~~lg~~~Ai~~gvy~f~~~d~~G~~~~~~areT~v~~~~~g~W 117 (128)
T PF08332_consen 47 LEFHKFY-----FDHFLAKKPQGVNTTILNPHVRLLGDNAAIDAGVYTFQFVDKDGVPRTVQARETRVWQKRDGKW 117 (128)
T ss_dssp CHHHHHH-----HHHTGTTTSSCEEEEEEEEEEEEESTTEEEEEEEEEEEEESTTSSEEEEEEEEEEEEEEETTEE
T ss_pred hHHHHHH-----HhcccccCCCceeeEecCCeEEEcCCCEEEEeeEEEEEeecCCCCeeeEEEeEEEEEEEeCCeE
Confidence 4566666 55556655444 58888999866 2 222344555554 554 7999999999998643
No 4
>PF05820 DUF845: Baculovirus protein of unknown function (DUF845); InterPro: IPR008563 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf81; it is a family of uncharacterised viral proteins.
Probab=23.05 E-value=82 Score=26.43 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=24.0
Q ss_pred CCceEEE-EEEEEEcCchHhhhheeeeeecc
Q psy13863 168 DNGIAKC-SVKIRVMSSGFFILLRFFLRVDD 197 (261)
Q Consensus 168 DnG~s~l-sVKiRVMp~~~fvL~RffLRVD~ 197 (261)
++.+-+. -.|+||-.+|..+|+.||.+|+-
T Consensus 24 ~~~~NvIkickv~V~Kt~gtlLAHYyA~I~~ 54 (119)
T PF05820_consen 24 SNNPNVIKICKVRVKKTGGTLLAHYYAQIDI 54 (119)
T ss_pred cCCCcEEEEEEEEEeecccchhhheeEEEEc
Confidence 4445455 45889999999999999999975
No 5
>PRK02234 recU Holliday junction-specific endonuclease; Reviewed
Probab=21.67 E-value=33 Score=30.87 Aligned_cols=61 Identities=16% Similarity=0.397 Sum_probs=43.0
Q ss_pred eecCcCCcccCC---ceeecC--cccCChhhhcCcCccccceeceeeccccCCCceEEEEEEEEEcCchHhhh
Q psy13863 121 YSTDYAGTLVGD---WAIEKT--SLQIDLEKLKQREKIHFYQDLILYEDELHDNGIAKCSVKIRVMSSGFFIL 188 (261)
Q Consensus 121 ytT~Y~Gt~~~~---~~~~~t--~~~I~~~kL~~~dpILF~~ev~LfEDEL~DnG~s~lsVKiRVMp~~~fvL 188 (261)
=||+|.|...|. ..+..| ...+|+..+.+ +++.-.++=+.-.|++-+-|.+..+...|+|=
T Consensus 79 St~DY~Gvy~G~~i~FEAKeT~~k~~fpl~nI~~-------HQi~~L~~~~~~gGiaF~iI~F~~~~e~y~vp 144 (195)
T PRK02234 79 STTDYNGVYKGKYIDFEAKETKNKTSFPLKNFHE-------HQIEHMKQVLKQGGICFVIIRFSTLDETYLLP 144 (195)
T ss_pred CCCceeEEECCEEEEEEccccCCCCccchhhCCH-------HHHHHHHHHHHCCCEEEEEEEEEeCCeEEEEE
Confidence 478999988875 233455 44699887765 55555666677789999988888777766543
No 6
>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=19.84 E-value=2.4e+02 Score=21.54 Aligned_cols=58 Identities=19% Similarity=0.408 Sum_probs=40.2
Q ss_pred hcCcCccccceeceeeccccCCCceEEEEEEEEEcCchHhhhheeeeeecceEEEEe-eeeEEEEcCCCeEEEEeee
Q psy13863 147 LKQREKIHFYQDLILYEDELHDNGIAKCSVKIRVMSSGFFILLRFFLRVDDVLVRMN-DTRLYHEYKNNFVLREIST 222 (261)
Q Consensus 147 L~~~dpILF~~ev~LfEDEL~DnG~s~lsVKiRVMp~~~fvL~RffLRVD~VlvRi~-DTRiyhef~~~~viRE~~~ 222 (261)
|+...+..+| .|.+....||..+..- --+--|..++++. |.-++..+|..++||++..
T Consensus 30 l~~~~~v~~~------------~Gt~~v~~ri~ll~~~------~~~pg~~~~a~l~l~~pl~~~~gdrfilR~~~~ 88 (97)
T cd04094 30 LKHRQRVHLH------------HGTSEVLARVVLLDRD------ELAPGEEALAQLRLEEPLVALRGDRFILRSYSP 88 (97)
T ss_pred CCCCCeEEEE------------eccceEEEEEEeCCcc------ccCCCCEEEEEEEECCcEeecCCCeEEEeeCCC
Confidence 6666777777 8899988888854310 0011344455555 7889999999999999874
No 7
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=19.19 E-value=99 Score=26.93 Aligned_cols=80 Identities=16% Similarity=0.231 Sum_probs=46.1
Q ss_pred eEEEchhhhHhhhhcCCCc-eeechhHHHhhcCcCCCCCCccccceeeeeecCcCCcccC--------------Cceeec
Q psy13863 73 SLEFNAFDALSSVIVGEMP-LQIACSEAWKSSRRSTGFTESHIHPFDWTYSTDYAGTLVG--------------DWAIEK 137 (261)
Q Consensus 73 ~i~Fna~DAL~~v~~~~~~-~kVa~A~~W~~sr~~~~~~~~~~kpfDWTytT~Y~Gt~~~--------------~~~~~~ 137 (261)
+|.|...+||+..-....- .||--|+..+.--+ +| +-.+|++.|.... ....++
T Consensus 67 GiRfEIheaLDrLytqGyRAtkviiA~RYr~L~~----------~y-Ler~~~wr~~~~~~~prLYGLPveFsp~~~~d~ 135 (161)
T PF09654_consen 67 GIRFEIHEALDRLYTQGYRATKVIIAQRYRELVS----------PY-LERSTPWRGQSESGRPRLYGLPVEFSPDPDEDP 135 (161)
T ss_pred ceeEeHHHHHHHHHhcccceeeeehHHHHHHHHH----------HH-HhccCCcCCCCCCCCcceeccceecCCCCCCCC
Confidence 3889999999987664433 89998888765222 22 1233333333211 111223
Q ss_pred CcccCChhhhcCcCccccceeceeec
Q psy13863 138 TSLQIDLEKLKQREKIHFYQDLILYE 163 (261)
Q Consensus 138 t~~~I~~~kL~~~dpILF~~ev~LfE 163 (261)
.=+-||.+.=|.+.+-.=|--.-|||
T Consensus 136 ~W~VINFdlekEpG~p~ryPyfrlf~ 161 (161)
T PF09654_consen 136 CWQVINFDLEKEPGVPARYPYFRLFE 161 (161)
T ss_pred ceeEEEeeeccCCCCcccCcchhccC
Confidence 33468888777776555666666664
No 8
>TIGR00648 recU recombination protein U. The Bacillus protein has been shown to be required for DNA recombination and repair. RJD 11/20/00
Probab=18.82 E-value=45 Score=29.42 Aligned_cols=60 Identities=17% Similarity=0.386 Sum_probs=40.1
Q ss_pred eecCcCCcccCC---ceeecC--cccCChhhhcCcCccccceeceeeccccCCCceEEEEEEEEEcCchHhh
Q psy13863 121 YSTDYAGTLVGD---WAIEKT--SLQIDLEKLKQREKIHFYQDLILYEDELHDNGIAKCSVKIRVMSSGFFI 187 (261)
Q Consensus 121 ytT~Y~Gt~~~~---~~~~~t--~~~I~~~kL~~~dpILF~~ev~LfEDEL~DnG~s~lsVKiRVMp~~~fv 187 (261)
=||+|.|...|. ..+..| ...+|+..+.+ +.+.-.++=+.-.||+-+-|.+......|+|
T Consensus 56 St~DY~Gvy~G~~i~FEAKeT~~k~~fpl~nI~~-------HQi~~L~~~~~~gGiaF~iI~F~~~~e~y~v 120 (169)
T TIGR00648 56 STTDYNGIYKGRYIDFEAKETKNKTSFPLQNIHD-------HQIEHMKQVKQQDGICFLIISFQTFDQVYFL 120 (169)
T ss_pred CcCCccceECCEEEEEEccccCCCCceehhhCCH-------HHHHHHHHHHHCCCEEEEEEEEeecCeEEEE
Confidence 478999998875 233455 44699887755 4455555656678888888777665555443
No 9
>KOG3224|consensus
Probab=15.94 E-value=62 Score=30.54 Aligned_cols=27 Identities=11% Similarity=0.166 Sum_probs=25.4
Q ss_pred CCccCCeEEEcCeEEEEeeccccccCC
Q psy13863 1 MATKCESYEIELWKINASTSHILASQC 27 (261)
Q Consensus 1 ~~~~~~~~~~~~W~i~~~k~pIL~s~~ 27 (261)
+|+++++|.+.+|.++..+.++.++++
T Consensus 9 ~~~d~~si~~~~~ra~~~~~~~~k~s~ 35 (278)
T KOG3224|consen 9 LPVDSESIQFHDWRAKYEMQKQDKFSF 35 (278)
T ss_pred ccccccceeeechhhhcchhcCcCccc
Confidence 478999999999999999999999987
No 10
>KOG0436|consensus
Probab=15.03 E-value=94 Score=31.82 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=16.7
Q ss_pred hcCCCCCCceeeCCcEEEEEe
Q psy13863 48 KLKIPHLPEMVFAGNILKLSH 68 (261)
Q Consensus 48 ~L~lp~lPEMvFg~N~l~i~h 68 (261)
.-|+| ||+|||++...+..-
T Consensus 323 aAGlp-lP~~I~vHghwt~ng 342 (578)
T KOG0436|consen 323 AAGLP-LPKMIFVHGHWTKNG 342 (578)
T ss_pred hcCCC-CccEEEEeeeeeecc
Confidence 57999 999999998877644
Done!