Query psy13863
Match_columns 261
No_of_seqs 114 out of 217
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 22:21:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13863.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13863hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jni_A Arenicin-2; peptide, an 32.4 37 0.0013 20.0 2.6 15 191-205 6-20 (26)
2 3ke7_A Putative ketosteroid is 30.8 1.5E+02 0.005 23.3 6.9 52 170-221 74-127 (134)
3 2f86_B Hypothetical protein K1 28.6 1.7E+02 0.0059 22.9 7.0 50 170-219 72-128 (143)
4 3soa_A Calcium/calmodulin-depe 15.9 2.3E+02 0.0078 26.0 5.9 44 171-214 382-431 (444)
5 3qva_A Transthyretin-like prot 12.3 56 0.0019 26.0 0.5 14 71-84 62-75 (116)
6 3f7s_A Uncharacterized NTF2-li 12.1 4.4E+02 0.015 19.3 5.9 50 172-221 72-125 (142)
7 3iwv_A 5-hydroxyisourate hydro 10.7 66 0.0023 26.3 0.5 9 119-128 130-138 (138)
8 1jsg_A Oncogene product P14TCL 10.6 1.3E+02 0.0046 23.9 2.2 29 152-183 16-44 (114)
9 3fsd_A NTF2-like protein of un 9.8 5.4E+02 0.019 18.8 5.8 42 173-214 74-120 (134)
10 2h0e_A Transthyretin-like prot 8.7 96 0.0033 24.7 0.7 13 71-83 64-76 (121)
No 1
>2jni_A Arenicin-2; peptide, antimicrobial, beta-sheet, antimicrobial protein; NMR {Arenicola marina} PDB: 2l8x_A 2jsb_A
Probab=32.40 E-value=37 Score=20.03 Aligned_cols=15 Identities=33% Similarity=0.600 Sum_probs=12.2
Q ss_pred eeeeecceEEEEeee
Q psy13863 191 FFLRVDDVLVRMNDT 205 (261)
Q Consensus 191 ffLRVD~VlvRi~DT 205 (261)
-|+|+-|||+|-+-+
T Consensus 6 ayvrirgvlvryrrc 20 (26)
T 2jni_A 6 AYVRIRGVLVRYRRC 20 (26)
T ss_dssp EEEEETTEEEEEEEE
T ss_pred EEEEEEEEEEEEEEe
Confidence 378999999998743
No 2
>3ke7_A Putative ketosteroid isomerase; structural genomics, joint C structural genomics, JCSG, protein structure initiative; HET: MSE BCN; 1.45A {Parabacteroides distasonis atcc 8503}
Probab=30.84 E-value=1.5e+02 Score=23.30 Aligned_cols=52 Identities=10% Similarity=0.085 Sum_probs=33.9
Q ss_pred ceEEEEEEEEEcCchHhhhheeeeeecceEEEEeeeeEEEEc-C-CCeEEEEee
Q psy13863 170 GIAKCSVKIRVMSSGFFILLRFFLRVDDVLVRMNDTRLYHEY-K-NNFVLREIS 221 (261)
Q Consensus 170 G~s~lsVKiRVMp~~~fvL~RffLRVD~VlvRi~DTRiyhef-~-~~~viRE~~ 221 (261)
...+++.+|.|..+..++-...-..+|+--.+++.||+|+.. + ...|+.+..
T Consensus 74 ~~ei~~p~V~v~gD~A~~~y~l~~~~~~~~~~~r~T~V~~r~~dG~W~ivH~H~ 127 (134)
T 3ke7_A 74 HFDMIRPVVQVAQNIAVLTFNLDSYLSDKVIKWNCTEVYRRNPDNQWKIIQTHW 127 (134)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECTTSBEEEEEEEE
T ss_pred eEEEeCCeEEEeCceEEEEEEEEEeeCCCcEEEEEEEEEEEcCCCcEEEEEEee
Confidence 456788888786665443212223456667899999999998 4 356666654
No 3
>2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain, transferase; 2.64A {Caenorhabditis elegans} SCOP: d.17.4.7
Probab=28.60 E-value=1.7e+02 Score=22.85 Aligned_cols=50 Identities=2% Similarity=0.114 Sum_probs=32.3
Q ss_pred ceEEEEEEEEEcC-chHhhh-heeeeee--cc--eEEEEeeeeEEEEcCC-CeEEEE
Q psy13863 170 GIAKCSVKIRVMS-SGFFIL-LRFFLRV--DD--VLVRMNDTRLYHEYKN-NFVLRE 219 (261)
Q Consensus 170 G~s~lsVKiRVMp-~~~fvL-~RffLRV--D~--VlvRi~DTRiyhef~~-~~viRE 219 (261)
....++.+|++.. +.-++. .|..... || +-.+.+.||+|...+. ..|+=+
T Consensus 72 ~~~~~~~~V~~~g~d~Av~~y~~~~~~~~~~G~~~~~~~r~T~V~~k~~g~WkivH~ 128 (143)
T 2f86_B 72 HTTMLNPNVHIIGEDAACVAYVKLTQFLDRNGEAHTRQSQESRVWSKKQGRWVCVHV 128 (143)
T ss_dssp EEEEEEEEEEEETTTEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred eeEEEcceEEEeCCCEEEEEEEeeeeeccCCCCeeeEEEEEEEEEEEeCCcEEEEEE
Confidence 4578899999998 543333 3344433 56 4457899999998753 444444
No 4
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=15.89 E-value=2.3e+02 Score=25.97 Aligned_cols=44 Identities=16% Similarity=0.320 Sum_probs=31.9
Q ss_pred eEEEEEEEEEcCch--H--hhhheeeeeecc--eEEEEeeeeEEEEcCCC
Q psy13863 171 IAKCSVKIRVMSSG--F--FILLRFFLRVDD--VLVRMNDTRLYHEYKNN 214 (261)
Q Consensus 171 ~s~lsVKiRVMp~~--~--fvL~RffLRVD~--VlvRi~DTRiyhef~~~ 214 (261)
..+++=+|+++.+- . |+.+=.|+--+| ...+..+|||+|.+++.
T Consensus 382 ~~~~~p~v~~~~~~~a~~~y~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 431 (444)
T 3soa_A 382 TTILNPHIHLMGDESACIAYIRITQYLDAGGIPRTAQSEETRVWHRRDGK 431 (444)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTE
T ss_pred EeecCCceEEecCcceeeeeeeeeeeeccCCCccccchhhheeeeecCCc
Confidence 37888999999853 2 333334444455 78999999999999764
No 5
>3qva_A Transthyretin-like protein; transthyretin-related protein, 5-hydroxyisourate hydrolase,; HET: PO4; 1.75A {Klebsiella pneumoniae subsp}
Probab=12.28 E-value=56 Score=25.95 Aligned_cols=14 Identities=7% Similarity=-0.104 Sum_probs=9.1
Q ss_pred ceeEEEchhhhHhh
Q psy13863 71 GCSLEFNAFDALSS 84 (261)
Q Consensus 71 g~~i~Fna~DAL~~ 84 (261)
-+.|.|.+-+=.+.
T Consensus 62 ~Y~L~F~tg~Yf~~ 75 (116)
T 3qva_A 62 RYCLTAETGAWFAR 75 (116)
T ss_dssp EEEEEECHHHHHHH
T ss_pred eEEEEEeHHHHHhh
Confidence 46777777666653
No 6
>3f7s_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Pseudomonas putida KT2440}
Probab=12.12 E-value=4.4e+02 Score=19.25 Aligned_cols=50 Identities=10% Similarity=-0.112 Sum_probs=30.6
Q ss_pred EEEEEEEEEcCchHhhhheeeeee---cceEEEEeeeeEEEEcCC-CeEEEEee
Q psy13863 172 AKCSVKIRVMSSGFFILLRFFLRV---DDVLVRMNDTRLYHEYKN-NFVLREIS 221 (261)
Q Consensus 172 s~lsVKiRVMp~~~fvL~RffLRV---D~VlvRi~DTRiyhef~~-~~viRE~~ 221 (261)
...+++|++-++..++-.+..++. |+...+.+.|.+|..-+. ..|+.+..
T Consensus 72 ~~~~~~v~~~gd~A~~~~~~~~~~~~~~g~~~~~r~T~v~~r~~g~W~ivh~H~ 125 (142)
T 3f7s_A 72 ELAQLTVHAAGDLALAHWLNRCGPGDDESQCGFMRATVGYRRQGGQWQVIHEHW 125 (142)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEESSCGGGCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred EEeeeEEEEcCCEEEEEEEEEEeeecCCCcceeeEEEEEEEEeCCEEEEEEEee
Confidence 445556666666555444433333 667788899999988754 45555443
No 7
>3iwv_A 5-hydroxyisourate hydrolase; transthyretin, molecular evolution, URIC acid degradation, T hormones, peroxisome, purine metabolism; 1.68A {Danio rerio} PDB: 3iwu_A 3q1e_A 2h6u_A 2h1x_A
Probab=10.73 E-value=66 Score=26.30 Aligned_cols=9 Identities=44% Similarity=0.859 Sum_probs=6.5
Q ss_pred eeeecCcCCc
Q psy13863 119 WTYSTDYAGT 128 (261)
Q Consensus 119 WTytT~Y~Gt 128 (261)
|.||| |+|+
T Consensus 130 ~gYST-YRGS 138 (138)
T 3iwv_A 130 FSYST-TRGS 138 (138)
T ss_dssp TEEEE-ECBC
T ss_pred Cccee-ecCC
Confidence 56776 8885
No 8
>1jsg_A Oncogene product P14TCL1; proto-oncogene, CL1 gene, T cell leukemia, oncoprotein, microsome; 2.50A {Homo sapiens} SCOP: b.63.1.1
Probab=10.63 E-value=1.3e+02 Score=23.86 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=23.6
Q ss_pred ccccceeceeeccccCCCceEEEEEEEEEcCc
Q psy13863 152 KIHFYQDLILYEDELHDNGIAKCSVKIRVMSS 183 (261)
Q Consensus 152 pILF~~ev~LfEDEL~DnG~s~lsVKiRVMp~ 183 (261)
.-|+..+--.|||| ||=+-+.|+++.-|+
T Consensus 16 ~~Lw~~~~gvYeDE---~~RtWv~v~ve~~~~ 44 (114)
T 1jsg_A 16 DRLWAWEKFVYLDE---KQHAWLPLTIEIKDR 44 (114)
T ss_dssp SEEEEEETTEEEET---TCCEEEEEEEEEETT
T ss_pred CEEEEecCCeEEcC---CCcEEEEEEEEecCC
Confidence 46888899999999 777788888887666
No 9
>3fsd_A NTF2-like protein of unknown function in nutrient; YP_427473.1, NTF2-like protein of unknown function in nutrie uptake; HET: UNL; 1.70A {Rhodospirillum rubrum atcc 11170} SCOP: d.17.4.0
Probab=9.76 E-value=5.4e+02 Score=18.83 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=26.5
Q ss_pred EEEEEEEEcCc-hHhhhheeeeee--cceE--EEEeeeeEEEEcCCC
Q psy13863 173 KCSVKIRVMSS-GFFILLRFFLRV--DDVL--VRMNDTRLYHEYKNN 214 (261)
Q Consensus 173 ~lsVKiRVMp~-~~fvL~RffLRV--D~Vl--vRi~DTRiyhef~~~ 214 (261)
....+||+... .-++..|+-+.. +|.- .+.+-|++|+..+..
T Consensus 74 ~~~~~v~~~g~d~Avv~~~~~~~~~~~g~~~~~~~~~t~vw~k~~g~ 120 (134)
T 3fsd_A 74 LSDAVVRAAGEDGRVVVVRAVTAGVYDGEAFTETLRFTRIWRRTQGP 120 (134)
T ss_dssp EEEEEEEESSTTEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTT
T ss_pred EeccEEEEeCCCEEEEEEEEEEEEEeCCcEEEEEEEEEEEEEECCCC
Confidence 34567777777 555555544432 5543 467789999988644
No 10
>2h0e_A Transthyretin-like protein PUCM; beta sandwitch, hydrolase, HIU; 2.20A {Bacillus subtilis} PDB: 2h0f_A* 2h0j_A*
Probab=8.72 E-value=96 Score=24.67 Aligned_cols=13 Identities=31% Similarity=0.388 Sum_probs=8.9
Q ss_pred ceeEEEchhhhHh
Q psy13863 71 GCSLEFNAFDALS 83 (261)
Q Consensus 71 g~~i~Fna~DAL~ 83 (261)
-+.|.|.+-+=.+
T Consensus 64 ~Y~l~F~tg~Yf~ 76 (121)
T 2h0e_A 64 EYVMEFHAGDYFA 76 (121)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEEEEhHHhHh
Confidence 4677777776665
Done!