Query psy13863
Match_columns 261
No_of_seqs 114 out of 217
Neff 4.8
Searched_HMMs 13730
Date Fri Aug 16 22:21:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13863.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13863hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2o3ga1 d.145.1.4 (A:180-255) 10.5 99 0.0072 20.1 3.1 19 1-19 43-61 (76)
2 d1usma_ d.74.1.1 (A:) Pterin-4 8.6 87 0.0064 20.9 2.2 25 43-69 32-56 (80)
3 d2p13a1 d.145.1.4 (A:431-515) 8.4 1.2E+02 0.0086 20.1 2.9 19 1-19 53-71 (85)
4 d1lvaa3 a.4.5.35 (A:511-574) C 7.9 57 0.0042 21.0 0.9 15 196-210 50-64 (64)
5 d1e9ga_ b.40.5.1 (A:) Inorgani 7.8 63 0.0046 27.3 1.3 49 120-178 1-49 (284)
6 d2oaia1 d.145.1.4 (A:5-91) Hem 7.6 1.5E+02 0.011 19.7 3.1 19 1-19 54-72 (87)
7 d1v9ka_ d.265.1.3 (A:) Ribosom 7.6 51 0.0037 25.8 0.6 8 158-165 1-8 (227)
8 d1y1oa_ c.52.1.28 (A:) Recombi 7.5 16 0.0011 28.9 -2.7 58 121-185 53-115 (168)
9 d2plsa1 d.145.1.4 (A:345-428) 7.3 1.6E+02 0.011 19.3 3.1 19 1-19 51-69 (84)
10 d2p4pa1 d.145.1.4 (A:1-82) Hyp 7.1 1.6E+02 0.012 19.2 3.1 19 1-19 48-66 (82)
No 1
>d2o3ga1 d.145.1.4 (A:180-255) Putative protein NMB1485 {Neisseria meningitidis [TaxId: 487]}
Probab=10.48 E-value=99 Score=20.13 Aligned_cols=19 Identities=5% Similarity=0.253 Sum_probs=16.2
Q ss_pred CCccCCeEEEcCeEEEEee
Q psy13863 1 MATKCESYEIELWKINAST 19 (261)
Q Consensus 1 ~~~~~~~~~~~~W~i~~~k 19 (261)
+|...+.+.+++|.|+..+
T Consensus 43 iP~~Ge~v~~~~~~f~V~~ 61 (76)
T d2o3ga1 43 IPDVGDFADFHGWRFEVVE 61 (76)
T ss_dssp CCCTTCEEEETTEEEEEEE
T ss_pred CCCCCCEEEECCEEEEEEE
Confidence 4777899999999998876
No 2
>d1usma_ d.74.1.1 (A:) Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) {Thermus thermophilus [TaxId: 274]}
Probab=8.62 E-value=87 Score=20.90 Aligned_cols=25 Identities=8% Similarity=0.104 Sum_probs=19.0
Q ss_pred hhhhhhcCCCCCCceeeCCcEEEEEec
Q psy13863 43 CRYSTKLKIPHLPEMVFAGNILKLSHA 69 (261)
Q Consensus 43 ~~~~~~L~lp~lPEMvFg~N~l~i~h~ 69 (261)
..+.++++ |-|++.++-|.|+|+-.
T Consensus 32 a~~ae~~~--HHPdi~~~~~~V~i~l~ 56 (80)
T d1usma_ 32 GALAEREN--HHPRLTVEWGRVTVEWW 56 (80)
T ss_dssp HHHHHHHT--CCCEEEEETTEEEEEEC
T ss_pred HHHHHHhc--CCCeEEEEcCeEEEEEE
Confidence 33446666 78999999999998653
No 3
>d2p13a1 d.145.1.4 (A:431-515) Uncharacterized protein NE2227 {Nitrosomonas europaea [TaxId: 915]}
Probab=8.39 E-value=1.2e+02 Score=20.06 Aligned_cols=19 Identities=5% Similarity=0.076 Sum_probs=16.6
Q ss_pred CCccCCeEEEcCeEEEEee
Q psy13863 1 MATKCESYEIELWKINAST 19 (261)
Q Consensus 1 ~~~~~~~~~~~~W~i~~~k 19 (261)
+|...+.+.+++|+|+..+
T Consensus 53 iP~~Ge~v~~~~~~f~V~~ 71 (85)
T d2p13a1 53 IPAAGEQITVDGLIFEIVS 71 (85)
T ss_dssp CCCTTCEEEETTEEEEECC
T ss_pred CCCCCCEEEECCEEEEEEE
Confidence 5778899999999999876
No 4
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=7.87 E-value=57 Score=20.97 Aligned_cols=15 Identities=40% Similarity=0.767 Sum_probs=11.6
Q ss_pred cceEEEEeeeeEEEE
Q psy13863 196 DDVLVRMNDTRLYHE 210 (261)
Q Consensus 196 D~VlvRi~DTRiyhe 210 (261)
.|.|+||.+-|+||.
T Consensus 50 ~G~lvkI~~d~yfhr 64 (64)
T d1lvaa3 50 EGVLVKINDEFYWHR 64 (64)
T ss_dssp TTSEEESSSSBEEEH
T ss_pred CCCEEEecccccccC
Confidence 477888888888873
No 5
>d1e9ga_ b.40.5.1 (A:) Inorganic pyrophosphatase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.76 E-value=63 Score=27.28 Aligned_cols=49 Identities=29% Similarity=0.475 Sum_probs=31.0
Q ss_pred eeecCcCCcccCCceeecCcccCChhhhcCcCccccceeceeeccccCCCceEEEEEEE
Q psy13863 120 TYSTDYAGTLVGDWAIEKTSLQIDLEKLKQREKIHFYQDLILYEDELHDNGIAKCSVKI 178 (261)
Q Consensus 120 TytT~Y~Gt~~~~~~~~~t~~~I~~~kL~~~dpILF~~ev~LfEDEL~DnG~s~lsVKi 178 (261)
||+|.-.|+... .+-+|-++ ....+|-+|+|+.||-|+ .+|+.-+-|-|
T Consensus 1 sy~~~~~G~~~t------~~yr~~~~--~~g~~iSp~HDIPl~~d~--~~~~~nvVVEI 49 (284)
T d1e9ga_ 1 TYTTRQIGAKNT------LEYKVYIE--KDGKPVSAFHDIPLYADK--ENNIFNMVVEI 49 (284)
T ss_dssp CEEEEEEEETTS------TTCEEEEE--ETTEEECTTTTSCSEEET--TTTEEEEEEEE
T ss_pred CceeeEccCCCC------cceeEEEc--cCCcccCccccCCCCCCC--CCCEEEEEEEe
Confidence 688888887543 22334322 134589999999999884 45665554443
No 6
>d2oaia1 d.145.1.4 (A:5-91) Hemolysin TlyC {Xylella fastidiosa [TaxId: 2371]}
Probab=7.63 E-value=1.5e+02 Score=19.67 Aligned_cols=19 Identities=16% Similarity=0.389 Sum_probs=16.3
Q ss_pred CCccCCeEEEcCeEEEEee
Q psy13863 1 MATKCESYEIELWKINAST 19 (261)
Q Consensus 1 ~~~~~~~~~~~~W~i~~~k 19 (261)
+|...+.+.++||+|+..+
T Consensus 54 iP~~Ge~v~~~~~~f~V~~ 72 (87)
T d2oaia1 54 IPHVGEYFDWAGWRIEIVD 72 (87)
T ss_dssp CCCTTCEEEETTEEEEEEE
T ss_pred CCCCCCEEEECCEEEEEEE
Confidence 4778899999999998876
No 7
>d1v9ka_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine synthase C, RluC {Escherichia coli [TaxId: 562]}
Probab=7.60 E-value=51 Score=25.76 Aligned_cols=8 Identities=63% Similarity=1.336 Sum_probs=4.5
Q ss_pred eceeeccc
Q psy13863 158 DLILYEDE 165 (261)
Q Consensus 158 ev~LfEDE 165 (261)
|++|||||
T Consensus 1 ~~IlyeD~ 8 (227)
T d1v9ka_ 1 DVIMYEDD 8 (227)
T ss_dssp CCEEEECS
T ss_pred CEEEEeCC
Confidence 45566655
No 8
>d1y1oa_ c.52.1.28 (A:) Recombination protein U (RecU)/PBP related factor A (PrfA) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=7.47 E-value=16 Score=28.90 Aligned_cols=58 Identities=17% Similarity=0.388 Sum_probs=37.8
Q ss_pred eecCcCCcccCC---ceeecC-cc-cCChhhhcCcCccccceeceeeccccCCCceEEEEEEEEEcCchH
Q psy13863 121 YSTDYAGTLVGD---WAIEKT-SL-QIDLEKLKQREKIHFYQDLILYEDELHDNGIAKCSVKIRVMSSGF 185 (261)
Q Consensus 121 ytT~Y~Gt~~~~---~~~~~t-~~-~I~~~kL~~~dpILF~~ev~LfEDEL~DnG~s~lsVKiRVMp~~~ 185 (261)
=||+|.|...|. .....| .. .+|+..+.+ +++.-.++=..-.|||-+-+.+......+
T Consensus 53 St~DY~Gvy~G~~I~FEAKeT~~ktsFpl~ni~~-------HQi~~L~~~~~~gGI~F~iI~F~~~~~~y 115 (168)
T d1y1oa_ 53 STTDYNGVYRGKYIDFEAKETKNKTAFPLKNFHA-------HQIRHMEQVVAHGGICFAILRFSLLNETY 115 (168)
T ss_dssp SSCSEEEEETTEEEEEEEEEECCSSEEEGGGSCH-------HHHHHHHHHHHTTCEEEEEEEETTTTEEE
T ss_pred CCCCeeeEecceEEEEEeeeccCCCeechhhCCH-------HHHHHHHHHHHCCCEEEEEEEEEecCeEE
Confidence 478999988875 233445 33 699877754 45555666677789988877764433333
No 9
>d2plsa1 d.145.1.4 (A:345-428) Hypothetical protein CT0541 {Chlorobium tepidum [TaxId: 1097]}
Probab=7.34 E-value=1.6e+02 Score=19.29 Aligned_cols=19 Identities=11% Similarity=0.247 Sum_probs=16.2
Q ss_pred CCccCCeEEEcCeEEEEee
Q psy13863 1 MATKCESYEIELWKINAST 19 (261)
Q Consensus 1 ~~~~~~~~~~~~W~i~~~k 19 (261)
+|...+.+.+++|+|+..+
T Consensus 51 iP~~Ge~v~~~~~~f~V~~ 69 (84)
T d2plsa1 51 LPQTGDITFWENWRLEVID 69 (84)
T ss_dssp CCCTTCEEEETTEEEEEEE
T ss_pred cCCCCCEEEECCEEEEEEE
Confidence 4778899999999998876
No 10
>d2p4pa1 d.145.1.4 (A:1-82) Hypothetical protein HD1797 {Haemophilus ducreyi [TaxId: 730]}
Probab=7.12 E-value=1.6e+02 Score=19.19 Aligned_cols=19 Identities=11% Similarity=0.144 Sum_probs=16.3
Q ss_pred CCccCCeEEEcCeEEEEee
Q psy13863 1 MATKCESYEIELWKINAST 19 (261)
Q Consensus 1 ~~~~~~~~~~~~W~i~~~k 19 (261)
+|...+.+.+++|+|+..+
T Consensus 48 iP~~Ge~v~~~~~~f~V~~ 66 (82)
T d2p4pa1 48 IPKKTDFVLYDKYKFEIID 66 (82)
T ss_dssp CCCTTCEEEETTEEEEEEE
T ss_pred CCCCCCEEEECCEEEEEEE
Confidence 4778899999999998776
Done!