RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13863
(261 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.007
Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 12/72 (16%)
Query: 157 QDLILYEDELHDNGIAKCSVKIRVMSSGFFILLRFFLRVDDVLVRMNDTRLYH---EYKN 213
Q L Y+ + DN R++++ +L F ++++ L+ T L ++
Sbjct: 525 QQLKFYKPYICDN----DPKYERLVNA----ILDFLPKIEENLICSKYTDLLRIALMAED 576
Query: 214 NFVLREISTRQA 225
+ E + +Q
Sbjct: 577 EAIFEE-AHKQV 587
Score = 32.9 bits (74), Expect = 0.11
Identities = 11/101 (10%), Positives = 23/101 (22%), Gaps = 29/101 (28%)
Query: 79 FDALSSVIVGEMPLQIACSEAWKSSRRSTGFTES-HIHPFDWTYSTDYAGTLVGDWAIEK 137
L ++ P +++ ES W +
Sbjct: 315 PQDLPREVLTTNPRRLS------------IIAESIRDGLATWDNWKHV-----NCDKLTT 357
Query: 138 TSLQIDLEKLKQREKIHFYQDLILYEDELHDNGIAKCSVKI 178
++ L L+ E + L ++ S I
Sbjct: 358 I-IESSLNVLEPAEYRKMFDRLSVFPP----------SAHI 387
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.23
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 18/45 (40%)
Query: 136 EKTSLQIDLEKLKQREKIHFYQDLILYEDELHDNGIA---KCSVK 177
EK +L+ KL+ K LY D D+ A K +++
Sbjct: 18 EKQALK----KLQASLK--------LYAD---DSAPALAIKATME 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.24
Identities = 29/153 (18%), Positives = 51/153 (33%), Gaps = 45/153 (29%)
Query: 9 EIELWKINASTSHI-------LASQCSEL------PDCDKSNSECDFC----RYSTK-LK 50
EI L +N + + + L L D+S F ++S + L
Sbjct: 367 EISL--VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP--FSERKLKFSNRFLP 422
Query: 51 I--P-HLPEMVFAGNILKLSHAGGCSLEFNAFDALSSVIVGEMPLQIA--CSEAWKSSRR 105
+ P H +V A +++ ++ FNA D +QI + R
Sbjct: 423 VASPFHSHLLVPASDLI-NKDLVKNNVSFNAKD-----------IQIPVYDTFDGSDLRV 470
Query: 106 -STGFTESHI-----HPFDWTYSTDYAGTLVGD 132
S +E + P W +T + T + D
Sbjct: 471 LSGSISERIVDCIIRLPVKWETTTQFKATHILD 503
>2jf7_A Strictosidine-O-beta-D-glucosidase; alkaloid, hydrolase; 2.48A
{Rauvolfia serpentina} PDB: 2jf6_A
Length = 532
Score = 27.6 bits (62), Expect = 4.3
Identities = 10/19 (52%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
Query: 153 IHFYQDLILYEDELHDNGI 171
+ FY D I DEL NGI
Sbjct: 138 VKFYHDFI---DELLANGI 153
>1v08_A Beta-glucosidase; glycoside hydrolase, dimboa-glucoside, inhibitor,
PEST defense, family GH1, hydrolase, chloroplast,
transit peptide, 3D-structure; HET: NTZ; 1.9A {Zea mays}
SCOP: c.1.8.4 PDB: 1e4l_A* 1e4n_A* 1e56_A* 1e55_A*
1e1e_A 1e1f_A* 1h49_A* 1hxj_A
Length = 512
Score = 27.5 bits (62), Expect = 4.3
Identities = 8/19 (42%), Positives = 13/19 (68%), Gaps = 3/19 (15%)
Query: 153 IHFYQDLILYEDELHDNGI 171
I +Y++LI + L +NGI
Sbjct: 119 IKYYRNLI---NLLLENGI 134
>1e4m_M Myrosinase MA1; hydrolase, family 1 glycosyl hydrolase,
glucosinolate, TIM B; HET: NAG FUC BMA MAN; 1.2A
{Sinapis alba} SCOP: c.1.8.4 PDB: 1e6q_M* 1e6s_M*
1e6x_M* 1e70_M* 1e71_M* 1e72_M* 1e73_M* 1w9b_M* 1w9d_M*
2wxd_M* 1dwa_M* 1dwf_M* 1dwg_M* 1dwh_M* 1dwi_M* 1dwj_M*
1myr_A*
Length = 501
Score = 27.6 bits (62), Expect = 4.7
Identities = 7/19 (36%), Positives = 8/19 (42%), Gaps = 3/19 (15%)
Query: 153 IHFYQDLILYEDELHDNGI 171
I +Y LI L GI
Sbjct: 118 IDYYHGLI---SGLIKKGI 133
>2dga_A Beta-glucosidase; alpha/beta barrel, hydrolase; 1.80A {Triticum
aestivum} PDB: 3aiq_A* 3air_A* 3ais_A* 3aiu_A 3aiv_A*
3aiw_A*
Length = 565
Score = 27.6 bits (62), Expect = 5.0
Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 3/19 (15%)
Query: 153 IHFYQDLILYEDELHDNGI 171
I +Y LI + L DN I
Sbjct: 167 IDYYNKLI---NSLIDNDI 182
>3gnp_A OS03G0212800 protein; beta-alpha barrel, glycosidase, hydrolase;
HET: SOG; 1.80A {Oryza sativa subsp} PDB: 3gno_A*
3gnr_A*
Length = 488
Score = 27.5 bits (62), Expect = 5.1
Identities = 8/19 (42%), Positives = 8/19 (42%), Gaps = 3/19 (15%)
Query: 153 IHFYQDLILYEDELHDNGI 171
I Y LI D L GI
Sbjct: 109 IDHYNKLI---DALLAKGI 124
>1yew_C Particulate methane monooxygenase subunit C2; membrane protein,
beta barrel, oxidoreductase; 2.80A {Methylococcus
capsulatus} PDB: 3rgb_C
Length = 289
Score = 27.3 bits (60), Expect = 5.1
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 105 RSTGFTESHIHPFDWTYSTDYAGTLVGDWAIEKTSL 140
R T FT SHI F +Y Y T + KT L
Sbjct: 165 RDTDFTPSHIIEFYLSYPI-YIITGFAAFIYAKTRL 199
>3ptm_A Beta-glucosidase OS4BGlu12; beta-alpha barrel, glycosidase,
hydrolase; HET: G2F; 2.40A {Oryza sativa} PDB: 3ptk_A*
3ptq_A*
Length = 505
Score = 27.5 bits (62), Expect = 5.3
Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
Query: 153 IHFYQDLILYEDELHDNGI 171
I +Y +LI +EL G+
Sbjct: 129 IKYYNNLI---NELLSKGV 144
>3f5l_A Beta-glucosidase; beta-alpha-barrels, glycosidase, hydrolase; HET:
LB2 MES; 1.37A {Oryza sativa japonica group} PDB:
3aht_A* 3ahv_A* 3f5i_A* 3f5j_A* 3f5k_A* 3f4v_A* 2rgm_A*
2rgl_A* 3scu_A* 3scn_A* 3sco_A* 3sct_A* 3scv_A* 3scw_A*
Length = 481
Score = 27.5 bits (62), Expect = 5.4
Identities = 6/19 (31%), Positives = 10/19 (52%), Gaps = 3/19 (15%)
Query: 153 IHFYQDLILYEDELHDNGI 171
+ +Y +LI + L GI
Sbjct: 112 VAYYNNLI---NYLLQKGI 127
>1v02_A Dhurrinase, dhurrinase-1; beta-glucosidase, dhurrin hydrolysis,
PEST defense, family GH1, hydrolase; 1.9A {Sorghum
bicolor} SCOP: c.1.8.4 PDB: 1v02_E 1v03_A*
Length = 565
Score = 27.6 bits (62), Expect = 5.4
Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
Query: 153 IHFYQDLILYEDELHDNGI 171
+ +Y LI D L +NGI
Sbjct: 171 VEYYNKLI---DLLLENGI 186
>1cbg_A Cyanogenic beta-glucosidase; hydrolase (O-glycosyl); 2.15A
{Trifolium repens} SCOP: c.1.8.4
Length = 490
Score = 27.1 bits (61), Expect = 5.8
Identities = 7/19 (36%), Positives = 13/19 (68%), Gaps = 3/19 (15%)
Query: 153 IHFYQDLILYEDELHDNGI 171
I++Y +LI +E+ NG+
Sbjct: 114 INYYNNLI---NEVLANGM 129
>1wcg_A Thioglucosidase, myrosinase; aphid, beta-glucosidase, insect,
beta-barrel, hydrolase, glycosidase; 1.10A {Brevicoryne
brassicae} SCOP: c.1.8.4
Length = 464
Score = 27.1 bits (61), Expect = 5.9
Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
Query: 153 IHFYQDLILYEDELHDNGI 171
I +Y +LI +EL N I
Sbjct: 99 IAYYNNLI---NELIKNDI 114
>3vii_A Beta-glucosidase; cellulases, glycosyl hydrolase, hydrolase; HET:
BTB; 0.97A {Neotermes koshunensis} PDB: 3ahz_A* 3vif_A*
3vih_A 3vig_A* 3vim_A* 3ai0_A* 3vin_A* 3vio_A* 3vip_A*
3vij_A* 3vik_A* 3vil_A*
Length = 487
Score = 27.1 bits (61), Expect = 6.1
Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 3/19 (15%)
Query: 153 IHFYQDLILYEDELHDNGI 171
I +Y +LI +EL NGI
Sbjct: 106 IDYYNNLI---NELLANGI 121
>2e9l_A Cytosolic beta-glucosidase; novel cytosolic neutral
beta-glycosylceramidase, hydrolase; HET: BGC PLM OLA;
1.60A {Homo sapiens} PDB: 2e9m_A* 2zox_A* 2jfe_X*
Length = 469
Score = 27.1 bits (61), Expect = 6.4
Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
Query: 153 IHFYQDLILYEDELHDNGI 171
I +Y +I D+L NG+
Sbjct: 97 IDYYNKII---DDLLKNGV 112
>2e3z_A Beta-glucosidase; TIM barrel, glycoside hydrolase family 1, CLAN
GH-A, structural genomics, NPPSFA; 1.50A {Phanerochaete
chrysosporium} PDB: 2e40_A*
Length = 465
Score = 26.7 bits (60), Expect = 7.8
Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 3/19 (15%)
Query: 153 IHFYQDLILYEDELHDNGI 171
I Y+ LI +EL GI
Sbjct: 103 IKHYRTLI---EELVKEGI 118
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 26.8 bits (58), Expect = 9.0
Identities = 24/185 (12%), Positives = 47/185 (25%), Gaps = 41/185 (22%)
Query: 84 SVIVGEMPLQIACSEAWKSSRRSTGFTESHIHPFDWTYSTDYAGTLVGDWAIEKTSLQID 143
V E P +I C + + S W W + L+
Sbjct: 18 QVFEDE-PARIKCPLFEHFLKFNYSTAHSAGLTLIWY------------WTRQDRDLEEP 64
Query: 144 LEKLKQREKIHFYQD-LILYEDELHDNGI-----------AKCSVKIRVMSSGFFILLRF 191
+ +I +D L L+D G +K + + V+
Sbjct: 65 INFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPM 124
Query: 192 FLRVDDVLVRMNDTRLYHE----------------YKNNFVLREISTRQASVKELRIPQS 235
L V + + R+ Y + ++ + L +
Sbjct: 125 KLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIA 184
Query: 236 MISDE 240
+IS+
Sbjct: 185 LISNN 189
>3rfr_C PMOC; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB:
3chx_C
Length = 256
Score = 26.6 bits (58), Expect = 9.2
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 105 RSTGFTESHIHPFDWTYSTDYAGTLVGDWAIEKTSL 140
R T FT SHI F +Y Y+ VG + KT +
Sbjct: 138 RDTDFTPSHIIEFYMSYPI-YSVIAVGAFFYAKTRI 172
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.403
Gapped
Lambda K H
0.267 0.0645 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,916,784
Number of extensions: 223936
Number of successful extensions: 357
Number of sequences better than 10.0: 1
Number of HSP's gapped: 356
Number of HSP's successfully gapped: 27
Length of query: 261
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 169
Effective length of database: 4,133,061
Effective search space: 698487309
Effective search space used: 698487309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.5 bits)