RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13863
         (261 letters)



>d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli
           [TaxId: 562]}
          Length = 289

 Score = 28.5 bits (63), Expect = 0.78
 Identities = 14/155 (9%), Positives = 38/155 (24%), Gaps = 9/155 (5%)

Query: 65  KLSHAGGCSLEFNAFDALSSVIVGEMPLQIACSEAWKSSRRSTGFTESHIHPFDWTYSTD 124
                          +A  +++      Q         +  S G  +  I   D   +  
Sbjct: 10  AALTKENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDI 69

Query: 125 YAGTLVGDWAIEKTSLQIDLEKLKQREKIHFYQDLILYEDELHDNGIAKCSVKIRVMSSG 184
                     +    L +D +        +  +        +   G A   ++ +V +  
Sbjct: 70  RR-----ITDVCSLPLLVDADIGFGSSAFNVAR----TVKSMIKAGAAGLHIEDQVGAKR 120

Query: 185 FFILLRFFLRVDDVLVRMNDTRLYHEYKNNFVLRE 219
                   +   + +V      +  +   +FV+  
Sbjct: 121 CGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMA 155


>d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 56

 Score = 24.1 bits (52), Expect = 4.9
 Identities = 6/23 (26%), Positives = 12/23 (52%)

Query: 25 SQCSELPDCDKSNSECDFCRYST 47
             + + +C++   EC  C Y+T
Sbjct: 7  IDPNAVGNCNRLTGECLKCIYNT 29


>d1k46a_ d.195.1.1 (A:) YopH tyrosine phosphatase N-terminal domain
           {Yersinia pseudotuberculosis [TaxId: 633]}
          Length = 124

 Score = 25.4 bits (55), Expect = 4.9
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 212 KNNFVLREISTRQASVKELRIPQSMISD 239
            NN+ LR +    + +  LR  Q  + D
Sbjct: 84  LNNYDLRSVGNGNSVLVSLRSDQMTLQD 111


>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS
           (YggB), middle domain {Escherichia coli [TaxId: 562]}
          Length = 67

 Score = 23.5 bits (51), Expect = 8.6
 Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 4/58 (6%)

Query: 183 SGFFILLRFFLRVDDVLVRMNDTRLYHEYKNNFVLREISTRQASVKELRIPQSMISDE 240
           +G  +++    R  +  V +              +   + R A  K + IP   I   
Sbjct: 8   AGVLLVMFRPFRAGEY-VDLGGVAGTVLSVQ---IFSTTMRTADGKIIVIPNGKIIAG 61


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0672    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 978,570
Number of extensions: 45116
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 4
Length of query: 261
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 177
Effective length of database: 1,254,276
Effective search space: 222006852
Effective search space used: 222006852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.9 bits)