BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13866
(201 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|383854732|ref|XP_003702874.1| PREDICTED: mediator of RNA polymerase II transcription subunit
24-like [Megachile rotundata]
Length = 999
Score = 225 bits (573), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 114/201 (56%), Positives = 146/201 (72%), Gaps = 1/201 (0%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
VI+ AEPTL+ +L+TL+ +++KI +ALL++L QVL+GKSF+L+LAVA VEGKL TFVTKL
Sbjct: 422 VIVRAEPTLSGILKTLNADYTKIHEALLSMLYQVLSGKSFELMLAVATVEGKLKTFVTKL 481
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVR 120
IKFNECSKQ N KTA T+ MLFD++FLMLCSIVQ YGS V E GGDSFFE+WVR
Sbjct: 482 IKFNECSKQINEPVQPKTAATRAMLFDVSFLMLCSIVQTYGSDAVLEEGGGDSFFEQWVR 541
Query: 121 DCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDV 180
+CM E +PK +KML D A VD LL Q NS D +FK+ + + C + + ++
Sbjct: 542 ECMPERNQPKSPQKMLQNIDPARVDALLAQINSPDPDFKSS-NIKWHIACQSAMGAVKEL 600
Query: 181 LGAWETSVLSSTDVKRILDAM 201
L AWE+ VL + DVKR LD +
Sbjct: 601 LCAWESDVLGAGDVKRALDGL 621
>gi|307204979|gb|EFN83518.1| Mediator of RNA polymerase II transcription subunit 24
[Harpegnathos saltator]
Length = 990
Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 116/201 (57%), Positives = 146/201 (72%), Gaps = 2/201 (0%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
VII AEPTLA +L+TL+ +++KIQ+ALL++L +VL G SF+L+LAVA VEGKL TFVTKL
Sbjct: 414 VIIRAEPTLAGILKTLNADYTKIQEALLSMLREVLTGNSFELMLAVATVEGKLKTFVTKL 473
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVR 120
IKFNECS+Q N KTA T+ MLFD++FLMLCSIVQ YGS VV E GGDSFFE+WVR
Sbjct: 474 IKFNECSRQINEPVPGKTAATRAMLFDMSFLMLCSIVQTYGSDVVL-EEGGDSFFEQWVR 532
Query: 121 DCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDV 180
CM E +PK ++ML D A VD LL Q NS D +FK+ L + C + + ++
Sbjct: 533 GCMPERNKPKSPQRMLQNIDPARVDALLAQINSPDLDFKSS-NLKWHVACQSAMGAVKEL 591
Query: 181 LGAWETSVLSSTDVKRILDAM 201
L AWE+ VLS+ DVKR LD +
Sbjct: 592 LCAWESGVLSAGDVKRALDGL 612
>gi|350397832|ref|XP_003485006.1| PREDICTED: mediator of RNA polymerase II transcription subunit
24-like [Bombus impatiens]
Length = 999
Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 111/201 (55%), Positives = 144/201 (71%), Gaps = 1/201 (0%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
VI+ AEPTL+ +L+TL+ +++KI +ALL++L QVL GKSF+L+LAVA VEGKL TFVTKL
Sbjct: 422 VIVRAEPTLSGILKTLNADYTKIHEALLSMLYQVLTGKSFELMLAVATVEGKLKTFVTKL 481
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVR 120
IKFNECSKQ + KTA T+ MLFDI+FLMLCSIVQ YGS V E GDSFFE+WVR
Sbjct: 482 IKFNECSKQISEPVPPKTAATRAMLFDISFLMLCSIVQTYGSDAVLEEGEGDSFFEQWVR 541
Query: 121 DCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDV 180
+CM E +PK +KML D A VD LL Q NS + + K+ + + C + + ++
Sbjct: 542 ECMPERNQPKSPQKMLQNIDPARVDALLAQINSPETDLKSS-NIKWHIACQSAMGAVKEL 600
Query: 181 LGAWETSVLSSTDVKRILDAM 201
L AWE+ VL ++DVKR LD +
Sbjct: 601 LCAWESDVLGASDVKRALDGL 621
>gi|340724378|ref|XP_003400559.1| PREDICTED: mediator of RNA polymerase II transcription subunit
24-like [Bombus terrestris]
Length = 999
Score = 216 bits (551), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 111/201 (55%), Positives = 144/201 (71%), Gaps = 1/201 (0%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
VI+ AEPTL+ +L+TL+ +++KI +ALL++L QVL GKSF+L+LAVA VEGKL TFVTKL
Sbjct: 422 VIVRAEPTLSGILKTLNADYTKIHEALLSMLYQVLTGKSFELMLAVATVEGKLKTFVTKL 481
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVR 120
IKFNECSKQ + S KTA T+ MLFDI+FLMLCSIVQ YGS V E GDSFFE+WVR
Sbjct: 482 IKFNECSKQISESVPPKTAATRAMLFDISFLMLCSIVQTYGSDAVLEEGEGDSFFEQWVR 541
Query: 121 DCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDV 180
+CM E +PK +KML D A VD LL Q NS + + + + + C + + ++
Sbjct: 542 ECMPERNQPKSPQKMLQNIDPAKVDALLAQINSPETDLISS-NIKWHISCQSAMGAVKEL 600
Query: 181 LGAWETSVLSSTDVKRILDAM 201
L AWE+ VL ++DVKR LD +
Sbjct: 601 LCAWESDVLGASDVKRALDGL 621
>gi|380021033|ref|XP_003694379.1| PREDICTED: mediator of RNA polymerase II transcription subunit
24-like [Apis florea]
Length = 999
Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/201 (55%), Positives = 141/201 (70%), Gaps = 1/201 (0%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
VI+ AEPTL+ +L+TL+ +++KI +ALL++L QVL G SF+LILAVA VEGKL TFVTKL
Sbjct: 422 VIVRAEPTLSGILKTLNADYTKIHEALLSMLYQVLTGNSFELILAVATVEGKLKTFVTKL 481
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVR 120
IKFNECSKQ N KTA + MLFDI+FLMLCSIVQ YGS V E GDSFFE+WVR
Sbjct: 482 IKFNECSKQINEPVPPKTAAKRAMLFDISFLMLCSIVQTYGSDAVLEEGEGDSFFEQWVR 541
Query: 121 DCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDV 180
+ M E +PK +KML D A VD LL Q NS D + K+ + + C + + ++
Sbjct: 542 EYMPERNQPKSPQKMLQNIDPARVDALLAQINSPDPDLKSS-NIKWHIACQSAMGAVKEL 600
Query: 181 LGAWETSVLSSTDVKRILDAM 201
L AWE+ VL ++DVKR LD +
Sbjct: 601 LCAWESDVLGASDVKRALDGL 621
>gi|328782931|ref|XP_392006.3| PREDICTED: mediator of RNA polymerase II transcription subunit 24
[Apis mellifera]
Length = 999
Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 111/201 (55%), Positives = 141/201 (70%), Gaps = 1/201 (0%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
VI+ AEPTL+ +L+TL+ +++KI +ALL++L QVL G SF+LILAVA VEGKL TFVTKL
Sbjct: 422 VIVRAEPTLSGILKTLNADYTKIHEALLSMLYQVLTGNSFELILAVATVEGKLKTFVTKL 481
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVR 120
IKFNECSKQ N KTA + MLFDI+FLMLCSIVQ YGS V E GDSFFE+WVR
Sbjct: 482 IKFNECSKQINEPVPPKTAAKRAMLFDISFLMLCSIVQTYGSDAVLEEGEGDSFFEQWVR 541
Query: 121 DCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDV 180
+ M E +PK +KML D A VD LL Q NS D + K+ + + C + + ++
Sbjct: 542 EYMPERNQPKSPQKMLQNIDPARVDALLAQINSPDPDLKSS-NIKWHIACQSAMGAVKEL 600
Query: 181 LGAWETSVLSSTDVKRILDAM 201
L AWE+ VL ++DVKR LD +
Sbjct: 601 LCAWESDVLGASDVKRALDGL 621
>gi|307170583|gb|EFN62777.1| Mediator of RNA polymerase II transcription subunit 24 [Camponotus
floridanus]
Length = 1059
Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 113/201 (56%), Positives = 142/201 (70%), Gaps = 2/201 (0%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
VII A+PTLA +L+TL+ +++KIQ+ALL++L VL G SF+L+LAVA VEGKL TFV KL
Sbjct: 483 VIIRAKPTLAGILKTLNADYTKIQEALLSMLYHVLTGNSFELMLAVATVEGKLKTFVAKL 542
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVR 120
IKFNE SKQ N KTA T+ MLFD++FLMLCSIVQ YGS VV E GGDSFFE+WV
Sbjct: 543 IKFNESSKQINEPVPDKTAATRAMLFDVSFLMLCSIVQTYGSDVVL-EEGGDSFFEQWVY 601
Query: 121 DCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDV 180
+CM E +PK +KML D A VD LL Q NS D +FK+ L + C + + ++
Sbjct: 602 ECMPERNKPKSPQKMLQSVDPARVDALLAQINSPDPDFKSS-NLKWHVACQSAMGAVKEL 660
Query: 181 LGAWETSVLSSTDVKRILDAM 201
L AWE+ VL + DVKR LD +
Sbjct: 661 LCAWESGVLGAGDVKRALDGL 681
>gi|332028573|gb|EGI68610.1| Mediator of RNA polymerase II transcription subunit 24 [Acromyrmex
echinatior]
Length = 978
Score = 213 bits (541), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 113/201 (56%), Positives = 142/201 (70%), Gaps = 2/201 (0%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
VI+ A TL +LRTL+ +++KIQ+ LL+VL QVL GKSF+L+LAVA VEG+L TFVTKL
Sbjct: 402 VIVRAGQTLNGILRTLNADYAKIQEGLLSVLYQVLTGKSFELMLAVATVEGELKTFVTKL 461
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVR 120
IKFNECSKQ N KTA T+ MLFD++FLMLCSIVQ YGS VV E GGDSFFE+WVR
Sbjct: 462 IKFNECSKQINEPVPDKTAATRAMLFDVSFLMLCSIVQTYGSDVVL-EEGGDSFFEQWVR 520
Query: 121 DCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDV 180
+CM E + K ++ML D A VD LL Q NS D +FK+ L + C + + ++
Sbjct: 521 ECMPERNKLKSPQRMLQSVDSARVDALLAQINSPDPDFKSS-NLKWHVACQSAMGAVKEL 579
Query: 181 LGAWETSVLSSTDVKRILDAM 201
L AWE+ VL + DVKR LD +
Sbjct: 580 LCAWESGVLGAGDVKRALDGL 600
>gi|328716678|ref|XP_001946687.2| PREDICTED: mediator of RNA polymerase II transcription subunit
24-like [Acyrthosiphon pisum]
Length = 967
Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 109/201 (54%), Positives = 144/201 (71%), Gaps = 2/201 (0%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ EPTL R+LRTLD+++SKIQ+AL++VLSQVL+G S +LILA A+VEGKL FV+K+
Sbjct: 411 IIMRTEPTLQRMLRTLDSDYSKIQEALVSVLSQVLSGNSLELILAAASVEGKLRMFVSKV 470
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVR 120
IKFNE SKQ N D +K+ +T +LFD+TFLMLC I Q+YG + +F + G D+FFEKW R
Sbjct: 471 IKFNEFSKQINLQDGAKSVRTNAVLFDMTFLMLCFITQKYGYQSIFLDGGNDTFFEKWCR 530
Query: 121 DCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDV 180
CMVE G PK ++ ++ E D + V LL N + + NC + +IC+ I +DV
Sbjct: 531 QCMVELGNPKSHETIMGECDPSKVTALLTAINDGE-DLINC-DTSWDQICITIIGATHDV 588
Query: 181 LGAWETSVLSSTDVKRILDAM 201
L AWE S LSS DVKRILDAM
Sbjct: 589 LVAWENSTLSSNDVKRILDAM 609
>gi|242003239|ref|XP_002422662.1| Thyroid hormone receptor-associated protein complex 100 kDa
component, putative [Pediculus humanus corporis]
gi|212505473|gb|EEB09924.1| Thyroid hormone receptor-associated protein complex 100 kDa
component, putative [Pediculus humanus corporis]
Length = 782
Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 117/204 (57%), Positives = 144/204 (70%), Gaps = 11/204 (5%)
Query: 1 VIICAEPTLARVLRTLDTE---FSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFV 57
VII AEPTLAR+LRTLD + ++Q L +L GKSFDLI AVAAV+GKL TFV
Sbjct: 408 VIIRAEPTLARLLRTLDADNIKMVRVQTVLCPIL-----GKSFDLITAVAAVDGKLRTFV 462
Query: 58 TKLIKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEK 117
TKLIKFNE K + + K +QT+ +LFD++FLMLCSIV YGS+VV SE GGDSFFE
Sbjct: 463 TKLIKFNETYKYGH-GEGPKQSQTRALLFDVSFLMLCSIVNIYGSQVVLSEEGGDSFFEL 521
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
WVR+ MVE G PK + +L D + VD LL QFNS++ +FK ++ EICLN+PA I
Sbjct: 522 WVRESMVEKGNPKSPESILALTDNSKVDALLAQFNSNE-DFKT-SQVKWNEICLNVPAAI 579
Query: 178 YDVLGAWETSVLSSTDVKRILDAM 201
+VL AWE LS+ DVKRILD+M
Sbjct: 580 KEVLLAWEQGTLSANDVKRILDSM 603
>gi|322792838|gb|EFZ16671.1| hypothetical protein SINV_08658 [Solenopsis invicta]
Length = 1041
Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/214 (53%), Positives = 143/214 (66%), Gaps = 14/214 (6%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
VI+ A TL +LRTL+ +++KIQ+ LL+VL QVL GKSF+L+LAVA VEG+L TFVTKL
Sbjct: 426 VIVRAGQTLNGILRTLNADYAKIQEGLLSVLYQVLTGKSFELMLAVATVEGELKTFVTKL 485
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKV-------------VFS 107
IKFNECSKQ N S KTA T+ MLFD++FLMLCSIVQ YGS V V
Sbjct: 486 IKFNECSKQINESVPDKTAATRAMLFDVSFLMLCSIVQTYGSDVSLAYVALRTEKDFVVL 545
Query: 108 ENGGDSFFEKWVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCY 167
E GGDSFFE+WVR+CM E + K ++ML D A VD LL Q NS D +FK+ L +
Sbjct: 546 EEGGDSFFEQWVRECMPERNKLKSPQRMLQNVDPARVDALLAQINSPDPDFKSS-NLKWH 604
Query: 168 EICLNIPAVIYDVLGAWETSVLSSTDVKRILDAM 201
C + + ++L AWE+ VL + DVKR LD +
Sbjct: 605 VACQSAMGAVKELLCAWESGVLGAGDVKRALDGL 638
>gi|91078514|ref|XP_969613.1| PREDICTED: similar to mediator complex, 100kD-subunit, putative
[Tribolium castaneum]
gi|270004025|gb|EFA00473.1| hypothetical protein TcasGA2_TC003332 [Tribolium castaneum]
Length = 910
Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 103/201 (51%), Positives = 141/201 (70%), Gaps = 10/201 (4%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
VIICAEPTLA +L+TL T++ KIQD LL +L QVL GKSF+LILAVA V+G+L T VT+L
Sbjct: 388 VIICAEPTLAGILKTLSTDYHKIQDPLLGMLHQVLTGKSFELILAVATVQGQLRTLVTRL 447
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVR 120
I+FNECSK S + + LFDI+FLML +IVQ YG+ V + G+S FE+WV+
Sbjct: 448 IRFNECSK-------SGGDKARAQLFDISFLMLVAIVQNYGANAVLDPD-GESLFEQWVK 499
Query: 121 DCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDV 180
CMVE RPK +++L D ++ LL+QFN+ +++FK P + ++ N+P V+++V
Sbjct: 500 SCMVERQRPKAPEQLLRLGDPDTIEMLLQQFNAGESDFK--PNIKWQDVLFNMPGVMHEV 557
Query: 181 LGAWETSVLSSTDVKRILDAM 201
L AWE L +DVKRILDA+
Sbjct: 558 LVAWEQGALVPSDVKRILDAV 578
>gi|307170584|gb|EFN62778.1| Mediator of RNA polymerase II transcription subunit 24 [Camponotus
floridanus]
Length = 986
Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 111/202 (54%), Positives = 141/202 (69%), Gaps = 7/202 (3%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
VIICAEPTLA +L+TL+ +++K +LL++L VLN SF+L+LAVA VEGKL TFV KL
Sbjct: 413 VIICAEPTLAGILKTLNADYTK--SSLLSMLYHVLN--SFELMLAVATVEGKLKTFVNKL 468
Query: 61 IKFNECSKQSNPSDTSKTA-QTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWV 119
IK NECSKQ N S T KTA + + M FD++FLMLCSIVQ YGS VV E GGDSFFE+WV
Sbjct: 469 IKLNECSKQINESVTGKTAAKQRAMSFDVSFLMLCSIVQTYGSDVVLEE-GGDSFFEQWV 527
Query: 120 RDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYD 179
R+CM E +PK ++ML D A VD LL Q NS D +FK+ L + C + + +
Sbjct: 528 RECMPERKKPKSPQRMLQNVDPARVDALLTQLNSPDPDFKSS-NLKWHVACQSAMGAVKE 586
Query: 180 VLGAWETSVLSSTDVKRILDAM 201
+L AWE+ VL + DVK LD +
Sbjct: 587 LLCAWESGVLGAGDVKMALDGL 608
>gi|427788567|gb|JAA59735.1| Putative mediator of rna polymerase ii transcription subunit
24-like protein [Rhipicephalus pulchellus]
Length = 1004
Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 137/200 (68%), Gaps = 3/200 (1%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+TLD+++SK QD LL +L +++GKSF+LIL+ AA GKL +FV KL
Sbjct: 410 LILRAEPTVTSILKTLDSDYSKNQDGLLGILCHIISGKSFELILSAAAATGKLSSFVKKL 469
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYG-SKVVFSENGGDSFFEKWV 119
IKFNE +KQ + + +K AQT+ +LFDITFLMLC I Q YG V F+E DSFF WV
Sbjct: 470 IKFNEYNKQVS-GEATKNAQTRALLFDITFLMLCHIAQHYGIHSVTFNEETKDSFFAAWV 528
Query: 120 RDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYD 179
+C+ EGGR KML D A VD +L QF S+ ++FKN + +E+C+N+P I +
Sbjct: 529 PECLAEGGRYNCPDKMLAGCDPAKVDLVLEQFMSNSSDFKNS-QAKWHEVCVNVPMAIKE 587
Query: 180 VLGAWETSVLSSTDVKRILD 199
+L AWE +S+ VK ILD
Sbjct: 588 ILIAWEHGAISTDTVKMILD 607
>gi|345483658|ref|XP_001599475.2| PREDICTED: mediator of RNA polymerase II transcription subunit
24-like [Nasonia vitripennis]
Length = 991
Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/201 (52%), Positives = 137/201 (68%), Gaps = 3/201 (1%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
VI+ AEPTLA L+TL+ E++KIQDALL++ QVL+G SF+L+L+VA VEGKL FV++L
Sbjct: 417 VIMRAEPTLAGFLKTLNAEYTKIQDALLSIFFQVLSGNSFELMLSVATVEGKLKIFVSRL 476
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVR 120
IKFNE SKQ KT T+ +LF+I+FLMLCSIVQ YG ++V E GGDSFFE+WVR
Sbjct: 477 IKFNEFSKQVGEV-PGKTPTTRALLFEISFLMLCSIVQTYGPEIVL-EEGGDSFFEQWVR 534
Query: 121 DCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDV 180
DCM +PK KML D VD LL Q S D++ K+ N C + V ++
Sbjct: 535 DCMPLKDKPKSPYKMLQNLDTTKVDMLLSQITSGDSDLKSS-NTNWQVSCQSAMGVAKEL 593
Query: 181 LGAWETSVLSSTDVKRILDAM 201
L AWE+ VLS+ DVKR L+ +
Sbjct: 594 LYAWESGVLSAADVKRALNGL 614
>gi|241603791|ref|XP_002405760.1| mediator of RNA polymerase II transcription subunit, putative
[Ixodes scapularis]
gi|215502571|gb|EEC12065.1| mediator of RNA polymerase II transcription subunit, putative
[Ixodes scapularis]
Length = 1007
Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 99/200 (49%), Positives = 137/200 (68%), Gaps = 3/200 (1%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L++LD ++SK QD LL +L ++ G+SF+LIL+ AA GKL +FV KL
Sbjct: 413 LILKAEPTVTSILKSLDADYSKNQDGLLGILCHMITGRSFELILSAAAATGKLNSFVKKL 472
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYG-SKVVFSENGGDSFFEKWV 119
IKFNE +KQ + +T++ AQT+ +LFDITFLMLC IVQ YG VVF+E DSFF WV
Sbjct: 473 IKFNEYNKQIS-GETTRNAQTRTLLFDITFLMLCHIVQNYGIHSVVFNEETRDSFFTTWV 531
Query: 120 RDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYD 179
+C+ EGGR +KML D A VD LL Q ++D +F ++ +E+C+NIP I +
Sbjct: 532 PECLAEGGRYNCPEKMLAGCDPAKVDLLLAQLMNNDNDFMT-NQVKWHEVCVNIPMAIKE 590
Query: 180 VLGAWETSVLSSTDVKRILD 199
+L AWE +S+ VK ILD
Sbjct: 591 ILVAWEHGAISTDSVKMILD 610
>gi|170062950|ref|XP_001866892.1| thyroid hormone receptor-associated protein complex 100 kDa
component [Culex quinquefasciatus]
gi|167880740|gb|EDS44123.1| thyroid hormone receptor-associated protein complex 100 kDa
component [Culex quinquefasciatus]
Length = 993
Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 98/197 (49%), Positives = 135/197 (68%), Gaps = 4/197 (2%)
Query: 5 AEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFN 64
AEP L +L+TL ++++K+Q+ALL +L QVL+G SF+LIL+VA V+GKL TF++ LIK N
Sbjct: 410 AEPPLVGILKTLGSDYNKVQEALLGMLLQVLSGNSFELILSVATVQGKLKTFISGLIKCN 469
Query: 65 ECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMV 124
E SKQ P + K A + LFD++FLML IVQ YGS+VV +EN GDSFFEKWVR+C+V
Sbjct: 470 EASKQI-PGEMGKVALARAALFDVSFLMLSFIVQSYGSEVVLAEN-GDSFFEKWVRECLV 527
Query: 125 EGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLGAW 184
E + K M+ DQ VD+L+ NS + L +EIC NIP ++Y VL AW
Sbjct: 528 EKHKSKSPAVMVKLCDQNKVDELIVSLNSPEG--LKGSSLKWHEICANIPGLLYQVLMAW 585
Query: 185 ETSVLSSTDVKRILDAM 201
E LS+ ++K+ LD++
Sbjct: 586 ENETLSTPEIKKFLDSL 602
>gi|157138148|ref|XP_001664149.1| mediator complex, 100kD-subunit, putative [Aedes aegypti]
gi|108869564|gb|EAT33789.1| AAEL013943-PA, partial [Aedes aegypti]
Length = 774
Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 134/200 (67%), Gaps = 4/200 (2%)
Query: 2 IICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLI 61
++ AEP L +L+TL ++++K+Q+ALL +L QVL+G SF+LIL+VA VEGKL TFV LI
Sbjct: 394 VLRAEPPLVGILKTLSSDYNKVQEALLGMLCQVLSGNSFELILSVATVEGKLKTFVAGLI 453
Query: 62 KFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRD 121
K NE SKQ P + K A T+ LFD++FLML IVQ YGS+ V + +G DSFFEKWVR+
Sbjct: 454 KCNENSKQV-PGEMGKPAMTRAALFDVSFLMLVFIVQNYGSEGVLT-DGTDSFFEKWVRE 511
Query: 122 CMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVL 181
CMVE + K M+ DQ VD+L+ NS D L EIC NIP ++Y VL
Sbjct: 512 CMVEKHKSKSPMNMVKLCDQNKVDELIVSLNSPDG--LKATSLKWQEICTNIPGLLYQVL 569
Query: 182 GAWETSVLSSTDVKRILDAM 201
AWE LS+ ++K+ LD++
Sbjct: 570 LAWENETLSTGEIKKFLDSL 589
>gi|157120513|ref|XP_001653641.1| mediator complex, 100kD-subunit, putative [Aedes aegypti]
gi|121955571|sp|Q16X15.1|MED24_AEDAE RecName: Full=Mediator of RNA polymerase II transcription subunit
24; AltName: Full=Mediator complex subunit 24
gi|108874916|gb|EAT39141.1| AAEL009027-PA [Aedes aegypti]
Length = 1005
Score = 185 bits (470), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 134/200 (67%), Gaps = 4/200 (2%)
Query: 2 IICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLI 61
++ AEP L +L+TL ++++K+Q+ALL +L QVL+G SF+LIL+VA VEGKL TFV LI
Sbjct: 431 VLRAEPPLVGILKTLSSDYNKVQEALLGMLCQVLSGNSFELILSVATVEGKLKTFVAGLI 490
Query: 62 KFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRD 121
K NE SKQ P + K A T+ LFD++FLML IVQ YGS+ V + +G DSFFEKWVR+
Sbjct: 491 KCNENSKQV-PGEMGKPAMTRAALFDVSFLMLVFIVQNYGSEGVLT-DGTDSFFEKWVRE 548
Query: 122 CMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVL 181
CMVE + K M+ DQ VD+L+ NS D L EIC NIP ++Y VL
Sbjct: 549 CMVEKHKSKSPMNMVKLCDQNKVDELIVSLNSPDG--LKATSLKWQEICANIPGLLYQVL 606
Query: 182 GAWETSVLSSTDVKRILDAM 201
AWE LS+ ++K+ LD++
Sbjct: 607 LAWENETLSTGEIKKFLDSL 626
>gi|157138146|ref|XP_001664148.1| mediator complex, 100kD-subunit, putative [Aedes aegypti]
gi|108869563|gb|EAT33788.1| AAEL013943-PB, partial [Aedes aegypti]
Length = 968
Score = 185 bits (470), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 134/200 (67%), Gaps = 4/200 (2%)
Query: 2 IICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLI 61
++ AEP L +L+TL ++++K+Q+ALL +L QVL+G SF+LIL+VA VEGKL TFV LI
Sbjct: 394 VLRAEPPLVGILKTLSSDYNKVQEALLGMLCQVLSGNSFELILSVATVEGKLKTFVAGLI 453
Query: 62 KFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRD 121
K NE SKQ P + K A T+ LFD++FLML IVQ YGS+ V + +G DSFFEKWVR+
Sbjct: 454 KCNENSKQV-PGEMGKPAMTRAALFDVSFLMLVFIVQNYGSEGVLT-DGTDSFFEKWVRE 511
Query: 122 CMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVL 181
CMVE + K M+ DQ VD+L+ NS D L EIC NIP ++Y VL
Sbjct: 512 CMVEKHKSKSPMNMVKLCDQNKVDELIVSLNSPDG--LKATSLKWQEICTNIPGLLYQVL 569
Query: 182 GAWETSVLSSTDVKRILDAM 201
AWE LS+ ++K+ LD++
Sbjct: 570 LAWENETLSTGEIKKFLDSL 589
>gi|357610987|gb|EHJ67256.1| hypothetical protein KGM_04931 [Danaus plexippus]
Length = 963
Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/197 (46%), Positives = 134/197 (68%), Gaps = 4/197 (2%)
Query: 5 AEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFN 64
AEPTLA +L+T+ +F K QD+L +L Q++ G + D ILAVA VEGKL FV++LIKFN
Sbjct: 405 AEPTLAGILKTMGGDFHKTQDSLHAMLCQIVGGTTLDTILAVATVEGKLKLFVSRLIKFN 464
Query: 65 ECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMV 124
E + S + Q+KV +FDI+FL+LCSIVQ YG++ V EN GDSFFE+WVR+CM
Sbjct: 465 EFALIS--ASEKNAPQSKVYIFDISFLILCSIVQDYGAEAVLDEN-GDSFFEQWVRECMP 521
Query: 125 EGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLGAW 184
+ G K +++L + D +D + ++ D +FKN L +++C+N+ VI ++L AW
Sbjct: 522 QKGVHKSPEQILQKCDSQVIDIFIHHLSAPDFDFKNT-NLKPHDLCINVCGVIKEILFAW 580
Query: 185 ETSVLSSTDVKRILDAM 201
E +SS D+KR+LD++
Sbjct: 581 EQGSISSADLKRMLDSL 597
>gi|321478689|gb|EFX89646.1| hypothetical protein DAPPUDRAFT_220502 [Daphnia pulex]
Length = 1220
Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/202 (43%), Positives = 134/202 (66%), Gaps = 5/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+++ AEPT+A +L+TLDT+++K QD LL VLS +L+G+SF+LIL A GKL F TKL
Sbjct: 659 LVLRAEPTVASILKTLDTDYAKNQDTLLKVLSHLLSGQSFELILNAATGTGKLRAFATKL 718
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFS-ENGGDSFFEKWV 119
++FNE ++Q SD SKTA + +LFDI+FLMLC I Q YG +V+ S E GG++FFE+W
Sbjct: 719 VRFNEANRQPAGSDPSKTANARALLFDISFLMLCRITQMYGIEVILSGELGGETFFEQWA 778
Query: 120 RDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYD 179
+ + P L D D LL+ S +++ ++ + +E C ++PAVI +
Sbjct: 779 SEWLKPNQAP---DLSLSRCDPMLTDQLLKALTSGESDLRSG-SVRWHEACFHVPAVIRE 834
Query: 180 VLGAWETSVLSSTDVKRILDAM 201
+LGA+E+ ++S +V+RILD +
Sbjct: 835 ILGAYESQLVSDEEVERILDTL 856
>gi|21356203|ref|NP_648185.1| mediator complex subunit 24 [Drosophila melanogaster]
gi|74870714|sp|Q9VSF2.2|MED24_DROME RecName: Full=Mediator of RNA polymerase II transcription subunit
24; AltName: Full=Mediator complex subunit 24; AltName:
Full=dMED24; AltName: Full=dTRAP100
gi|9937480|gb|AAG02463.1|AF289998_1 thyroid hormone receptor-associated protein TRAP100 [Drosophila
melanogaster]
gi|23093934|gb|AAF50469.2| mediator complex subunit 24 [Drosophila melanogaster]
gi|94400632|gb|ABF17923.1| FI01005p [Drosophila melanogaster]
Length = 993
Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 102/195 (52%), Positives = 130/195 (66%), Gaps = 5/195 (2%)
Query: 5 AEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFN 64
AE L+ VL+TL T +K+QD ++NVL QV G SF+LIL+VA VEG+L TFV++LI+ N
Sbjct: 419 AEVPLSGVLKTLCT--NKVQD-MVNVLCQVPVGNSFELILSVATVEGRLKTFVSRLIQCN 475
Query: 65 ECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMV 124
E SK P D K + LFD++FLML SIVQ YGS VV SE G DSFFEKWVR+CMV
Sbjct: 476 ENSKPV-PGDLGKLCVIRSTLFDVSFLMLTSIVQTYGSDVVLSERG-DSFFEKWVRECMV 533
Query: 125 EGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLGAW 184
E + K +++L D + VD+LL F+ +A L+ E CLN+P V++ VL AW
Sbjct: 534 ERNKLKNPRQILALCDDSIVDELLLSFSKPEASQLKPNNLSWQETCLNLPGVLHHVLIAW 593
Query: 185 ETSVLSSTDVKRILD 199
E LSS DVK ILD
Sbjct: 594 EQETLSSADVKSILD 608
>gi|21483520|gb|AAM52735.1| RE21150p [Drosophila melanogaster]
Length = 993
Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 102/195 (52%), Positives = 130/195 (66%), Gaps = 5/195 (2%)
Query: 5 AEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFN 64
AE L+ VL+TL T +K+QD ++NVL QV G SF+LIL+VA VEG+L TFV++LI+ N
Sbjct: 419 AEVPLSGVLKTLCT--NKVQD-MVNVLCQVPVGNSFELILSVATVEGRLKTFVSRLIQCN 475
Query: 65 ECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMV 124
E SK P D K + LFD++FLML SIVQ YGS VV SE G DSFFEKWVR+CMV
Sbjct: 476 ENSKPV-PGDLGKLCVIRSTLFDVSFLMLTSIVQTYGSDVVLSERG-DSFFEKWVRECMV 533
Query: 125 EGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLGAW 184
E + K +++L D + VD+LL F+ +A L+ E CLN+P V++ VL AW
Sbjct: 534 ERNKLKNPRQILALCDDSIVDELLLSFSKPEASQLKPNNLSWQETCLNLPGVLHHVLIAW 593
Query: 185 ETSVLSSTDVKRILD 199
E LSS DVK ILD
Sbjct: 594 EQETLSSADVKSILD 608
>gi|195325917|ref|XP_002029677.1| GM25026 [Drosophila sechellia]
gi|194118620|gb|EDW40663.1| GM25026 [Drosophila sechellia]
Length = 993
Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 101/195 (51%), Positives = 130/195 (66%), Gaps = 5/195 (2%)
Query: 5 AEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFN 64
AE L+ VL+TL T +K+QD ++NVL QV G SF+LIL+VA VEG+L TFV++LI+ N
Sbjct: 419 AEVPLSGVLKTLCT--NKVQD-MVNVLCQVPVGNSFELILSVATVEGRLKTFVSRLIQCN 475
Query: 65 ECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMV 124
E SK P + K + LFD++FLML SIVQ YGS VV SE G DSFFEKWVR+CMV
Sbjct: 476 ENSKPV-PGELGKLCVIRSTLFDVSFLMLTSIVQTYGSDVVLSERG-DSFFEKWVRECMV 533
Query: 125 EGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLGAW 184
E + K +++L D + VD+LL F+ +A L+ E CLN+P V++ VL AW
Sbjct: 534 ERNKLKNPRQILALCDDSIVDELLLSFSKPEAAQLKANNLSWQETCLNLPGVLHHVLIAW 593
Query: 185 ETSVLSSTDVKRILD 199
E LSS DVK ILD
Sbjct: 594 EQETLSSADVKSILD 608
>gi|195588649|ref|XP_002084070.1| Trap100 [Drosophila simulans]
gi|194196079|gb|EDX09655.1| Trap100 [Drosophila simulans]
Length = 993
Score = 169 bits (427), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 101/195 (51%), Positives = 130/195 (66%), Gaps = 5/195 (2%)
Query: 5 AEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFN 64
AE L+ VL+TL T +K+QD ++NVL QV G SF+LIL+VA VEG+L TFV++LI+ N
Sbjct: 419 AEVPLSGVLKTLCT--NKVQD-MVNVLCQVPVGNSFELILSVATVEGRLKTFVSRLIQCN 475
Query: 65 ECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMV 124
E SK P + K + LFD++FLML SIVQ YGS VV SE G DSFFEKWVR+CMV
Sbjct: 476 ENSKPV-PGELGKLCVIRSTLFDVSFLMLTSIVQTYGSDVVLSERG-DSFFEKWVRECMV 533
Query: 125 EGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLGAW 184
E + K +++L D + VD+LL F+ +A L+ E CLN+P V++ VL AW
Sbjct: 534 ERNKLKNPRQILALCDDSIVDELLLSFSKPEAAQLKANNLSWQETCLNLPGVLHHVLIAW 593
Query: 185 ETSVLSSTDVKRILD 199
E LSS DVK ILD
Sbjct: 594 EQETLSSADVKSILD 608
>gi|195440374|ref|XP_002068017.1| GK12010 [Drosophila willistoni]
gi|194164102|gb|EDW79003.1| GK12010 [Drosophila willistoni]
Length = 997
Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 99/195 (50%), Positives = 130/195 (66%), Gaps = 5/195 (2%)
Query: 5 AEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFN 64
AE L+ V++TL T +K+QD ++NVL QV G SF+LIL+VA VEG+L TFVT+LI+ N
Sbjct: 420 AEVPLSGVIKTLCT--NKVQD-MVNVLCQVPVGNSFELILSVATVEGRLKTFVTRLIQCN 476
Query: 65 ECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMV 124
E SK P + K + + LFD++FLML SIVQ YGS +V SE G DSFFEKWVR+CMV
Sbjct: 477 ENSK-PQPGELGKLSVIRSTLFDVSFLMLTSIVQTYGSDIVLSERG-DSFFEKWVRECMV 534
Query: 125 EGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLGAW 184
E + K +++L D A VD+LL + + L+ +ICLN+P V++ VL AW
Sbjct: 535 ERNKLKNPRQILALCDDAIVDELLLNLSKPETSQLKPSNLSWQDICLNLPGVLHHVLIAW 594
Query: 185 ETSVLSSTDVKRILD 199
E LSS DVK ILD
Sbjct: 595 EQETLSSADVKNILD 609
>gi|194865982|ref|XP_001971700.1| GG14284 [Drosophila erecta]
gi|190653483|gb|EDV50726.1| GG14284 [Drosophila erecta]
Length = 993
Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/195 (51%), Positives = 131/195 (67%), Gaps = 5/195 (2%)
Query: 5 AEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFN 64
AE L+ VL+TL T +K+QD ++NVL QV G SF+LIL+VA VEG+L TFV++LI+ N
Sbjct: 419 AEVPLSGVLKTLCT--NKVQD-MVNVLCQVPVGNSFELILSVATVEGRLKTFVSRLIQCN 475
Query: 65 ECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMV 124
E SK P + K ++ LFD++FLML SIVQ YGS VV SE G DSFFEKWVR+CMV
Sbjct: 476 ENSKPV-PGELGKMCVSRSTLFDVSFLMLTSIVQTYGSDVVLSERG-DSFFEKWVRECMV 533
Query: 125 EGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLGAW 184
E + K +++L + + VD+LL F+ +A L+ E CLN+P V++ VL AW
Sbjct: 534 ERNKLKNPRQILALCEDSIVDELLLSFSKPEAAQLKPNNLSWQETCLNLPGVLHHVLIAW 593
Query: 185 ETSVLSSTDVKRILD 199
E LSS DVK ILD
Sbjct: 594 EQETLSSADVKSILD 608
>gi|195012340|ref|XP_001983594.1| GH15494 [Drosophila grimshawi]
gi|193897076|gb|EDV95942.1| GH15494 [Drosophila grimshawi]
Length = 993
Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/199 (50%), Positives = 133/199 (66%), Gaps = 7/199 (3%)
Query: 5 AEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFN 64
AE L+ VL+TL T +K+QD ++NVL QV G +F+LIL+VA VEG L TFV++LI+ N
Sbjct: 420 AEVPLSGVLKTLCT--NKVQD-MVNVLCQVPVGNNFELILSVATVEGLLKTFVSRLIQCN 476
Query: 65 ECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMV 124
E SKQ P + K + + LFD++FLML SIVQ YGS VV SE GDSFFEKWVR+CM+
Sbjct: 477 ENSKQV-PGELGKLSVIRSTLFDVSFLMLTSIVQTYGSDVVLSER-GDSFFEKWVRECMM 534
Query: 125 EGGRPKPYKKMLDEKDQAGVDDLLRQFNSSD--AEFKNCPKLNCYEICLNIPAVIYDVLG 182
E + K +++L D + VD+LL + + A+ K L +ICLN+P V++ VL
Sbjct: 535 ERNKLKNPRQILALCDDSIVDELLLSLSKPEAAAQLKQPSSLTWQDICLNLPGVLHHVLI 594
Query: 183 AWETSVLSSTDVKRILDAM 201
AWE LSS DVK ILD M
Sbjct: 595 AWEQETLSSADVKSILDNM 613
>gi|195375259|ref|XP_002046419.1| GJ12515 [Drosophila virilis]
gi|194153577|gb|EDW68761.1| GJ12515 [Drosophila virilis]
Length = 994
Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/197 (50%), Positives = 131/197 (66%), Gaps = 5/197 (2%)
Query: 5 AEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFN 64
AE L+ VL+TL T +K+ D ++NVL QV G SF+LIL+VA VEG+L TFV++LI+ N
Sbjct: 420 AEVPLSGVLKTLCT--NKLPD-MVNVLCQVPVGNSFELILSVATVEGRLKTFVSRLIQCN 476
Query: 65 ECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMV 124
E SKQ P + K + + LFD++FLML SIVQ YGS VV SE G DSFFEKWVR+CM+
Sbjct: 477 ENSKQL-PGELGKLSVIRSTLFDVSFLMLTSIVQTYGSDVVLSERG-DSFFEKWVRECMM 534
Query: 125 EGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLGAW 184
E + K +++L D + VD+LL + +A L +ICLN+P V++ VL AW
Sbjct: 535 ERNKLKNPRQILALCDDSIVDELLLSLSKPEAAQLKPSNLTWQDICLNLPGVLHHVLIAW 594
Query: 185 ETSVLSSTDVKRILDAM 201
E LSS DVK ILD M
Sbjct: 595 EQETLSSADVKSILDNM 611
>gi|194747575|ref|XP_001956227.1| GF25101 [Drosophila ananassae]
gi|190623509|gb|EDV39033.1| GF25101 [Drosophila ananassae]
Length = 994
Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 101/199 (50%), Positives = 131/199 (65%), Gaps = 5/199 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I AE L+ VL+TL T +K+QD ++NVL QV G SF+LIL+VA VEG+L TFV++L
Sbjct: 415 IIKRAEVPLSGVLKTLCT--NKVQD-MVNVLCQVPVGNSFELILSVATVEGRLKTFVSRL 471
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVR 120
I+ NE SK P + K + LFD++FLML SIVQ YGS VV SE G DSFFEKWVR
Sbjct: 472 IQCNENSKPV-PGELGKLCVIRSTLFDVSFLMLTSIVQTYGSDVVLSERG-DSFFEKWVR 529
Query: 121 DCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDV 180
+CMVE + K +++L D + VD+LL + +A L+ E CLN+P V++ V
Sbjct: 530 ECMVERNKLKNPRQILALCDDSIVDELLLSLSKPEAAQLKPSNLSWQETCLNLPGVLHHV 589
Query: 181 LGAWETSVLSSTDVKRILD 199
L AWE LSS DVK ILD
Sbjct: 590 LVAWEQETLSSADVKSILD 608
>gi|30525511|gb|AAP32700.1| thyroid hormone receptor-associated protein TRAP100 [Drosophila
pseudoobscura]
Length = 612
Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 101/196 (51%), Positives = 134/196 (68%), Gaps = 7/196 (3%)
Query: 5 AEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFN 64
AE L+ VL+TL T +K+QD ++NVL QV G SF+LIL+VA V+G+L TFV++LI+ N
Sbjct: 38 AEVPLSGVLKTLCT--NKVQD-MVNVLCQVPVGNSFELILSVATVDGRLKTFVSRLIQCN 94
Query: 65 ECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMV 124
E SK P++ K T+ LFD++FLML SIVQ YGS VV S+ G DSFFEKWVR+CMV
Sbjct: 95 ENSKPV-PAELGKLCVTRSTLFDVSFLMLTSIVQTYGSDVVLSDRG-DSFFEKWVRECMV 152
Query: 125 EGGRPKPYKKMLDEKDQAGVDDLLRQFNSSD-AEFKNCPKLNCYEICLNIPAVIYDVLGA 183
E + K +++L D + VD+LL + + A+ K C L+ E CLN+P V++ VL A
Sbjct: 153 ERNKLKNPRQILALCDDSMVDELLLSLSKPEAAQLKPC-SLSWQETCLNLPGVLHHVLIA 211
Query: 184 WETSVLSSTDVKRILD 199
WE LSS DVK ILD
Sbjct: 212 WEQETLSSADVKNILD 227
>gi|30525521|gb|AAP32701.1| thyroid hormone receptor-associated protein TRAP100 [Drosophila
persimilis]
Length = 612
Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 101/196 (51%), Positives = 134/196 (68%), Gaps = 7/196 (3%)
Query: 5 AEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFN 64
AE L+ VL+TL T +K+QD ++NVL QV G SF+LIL+VA V+G+L TFV++LI+ N
Sbjct: 38 AEVPLSGVLKTLCT--NKVQD-MVNVLCQVPVGNSFELILSVATVDGRLKTFVSRLIQCN 94
Query: 65 ECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMV 124
E SK P++ K T+ LFD++FLML SIVQ YGS VV S+ G DSFFEKWVR+CMV
Sbjct: 95 ENSKPV-PAELGKLCVTRSTLFDVSFLMLTSIVQTYGSDVVLSDRG-DSFFEKWVRECMV 152
Query: 125 EGGRPKPYKKMLDEKDQAGVDDLLRQFNSSD-AEFKNCPKLNCYEICLNIPAVIYDVLGA 183
E + K +++L D + VD+LL + + A+ K C L+ E CLN+P V++ VL A
Sbjct: 153 ERNKLKNPRQILALCDDSMVDELLLSLSKPEAAQLKPC-SLSWQETCLNLPGVLHHVLIA 211
Query: 184 WETSVLSSTDVKRILD 199
WE LSS DVK ILD
Sbjct: 212 WEQETLSSADVKNILD 227
>gi|30525523|gb|AAP32702.1| thyroid hormone receptor-associated protein TRAP100 [Drosophila
miranda]
Length = 600
Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 101/196 (51%), Positives = 134/196 (68%), Gaps = 7/196 (3%)
Query: 5 AEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFN 64
AE L+ VL+TL T +K+QD ++NVL QV G SF+LIL+VA V+G+L TFV++LI+ N
Sbjct: 26 AEVPLSGVLKTLCT--NKVQD-MVNVLCQVPVGNSFELILSVATVDGRLKTFVSRLIQCN 82
Query: 65 ECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMV 124
E SK P++ K T+ LFD++FLML SIVQ YGS VV S+ G DSFFEKWVR+CMV
Sbjct: 83 ENSKPV-PAELGKLCVTRSTLFDVSFLMLTSIVQTYGSDVVLSDRG-DSFFEKWVRECMV 140
Query: 125 EGGRPKPYKKMLDEKDQAGVDDLLRQFNSSD-AEFKNCPKLNCYEICLNIPAVIYDVLGA 183
E + K +++L D + VD+LL + + A+ K C L+ E CLN+P V++ VL A
Sbjct: 141 ERNKLKNPRQILALCDDSMVDELLLSLSKPEAAQLKPC-SLSWQETCLNLPGVLHHVLIA 199
Query: 184 WETSVLSSTDVKRILD 199
WE LSS DVK ILD
Sbjct: 200 WEQETLSSADVKSILD 215
>gi|198466968|ref|XP_001354207.2| Trap100 [Drosophila pseudoobscura pseudoobscura]
gi|198149446|gb|EAL31259.2| Trap100 [Drosophila pseudoobscura pseudoobscura]
Length = 992
Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 101/196 (51%), Positives = 134/196 (68%), Gaps = 7/196 (3%)
Query: 5 AEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFN 64
AE L+ VL+TL T +K+QD ++NVL QV G SF+LIL+VA V+G+L TFV++LI+ N
Sbjct: 418 AEVPLSGVLKTLCT--NKVQD-MVNVLCQVPVGNSFELILSVATVDGRLKTFVSRLIQCN 474
Query: 65 ECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMV 124
E SK P++ K T+ LFD++FLML SIVQ YGS VV S+ G DSFFEKWVR+CMV
Sbjct: 475 ENSKPV-PAELGKLCVTRSTLFDVSFLMLTSIVQTYGSDVVLSDRG-DSFFEKWVRECMV 532
Query: 125 EGGRPKPYKKMLDEKDQAGVDDLLRQFNSSD-AEFKNCPKLNCYEICLNIPAVIYDVLGA 183
E + K +++L D + VD+LL + + A+ K C L+ E CLN+P V++ VL A
Sbjct: 533 ERNKLKNPRQILALCDDSMVDELLLSLSKPEAAQLKPC-SLSWQETCLNLPGVLHHVLIA 591
Query: 184 WETSVLSSTDVKRILD 199
WE LSS DVK ILD
Sbjct: 592 WEQETLSSADVKNILD 607
>gi|195491301|ref|XP_002093504.1| GE20713 [Drosophila yakuba]
gi|194179605|gb|EDW93216.1| GE20713 [Drosophila yakuba]
Length = 707
Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 100/195 (51%), Positives = 130/195 (66%), Gaps = 5/195 (2%)
Query: 5 AEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFN 64
AE L+ VL+TL T +K+QD ++NVL QV G SF+LIL+VA VEG+L TFV++LI+ N
Sbjct: 419 AEVPLSGVLKTLCT--NKVQD-MVNVLCQVPVGNSFELILSVATVEGRLKTFVSRLIQCN 475
Query: 65 ECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMV 124
E SK P + K + LFD++FLML SIVQ YGS VV SE G DSFFEKWVR+CMV
Sbjct: 476 ENSKPV-PGELGKLCVIRSTLFDVSFLMLTSIVQTYGSDVVLSERG-DSFFEKWVRECMV 533
Query: 125 EGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLGAW 184
E + K +++L + + VD+LL F+ +A L+ E CLN+P V++ VL AW
Sbjct: 534 ERNKLKNPRQILALCEDSIVDELLLSFSKPEAAQLKPNNLSWQETCLNLPGVLHHVLIAW 593
Query: 185 ETSVLSSTDVKRILD 199
E LSS DVK ILD
Sbjct: 594 EQETLSSADVKSILD 608
>gi|158294976|ref|XP_315936.4| AGAP005906-PA [Anopheles gambiae str. PEST]
gi|166215085|sp|Q7Q6D9.4|MED24_ANOGA RecName: Full=Mediator of RNA polymerase II transcription subunit
24; AltName: Full=Mediator complex subunit 24
gi|157015816|gb|EAA11905.4| AGAP005906-PA [Anopheles gambiae str. PEST]
Length = 1036
Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/198 (41%), Positives = 129/198 (65%), Gaps = 3/198 (1%)
Query: 6 EPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFNE 65
E LA +L+ L T+ SK+QDALL +L QVL G S DL+L+VA+VEGK F++ L+K N+
Sbjct: 437 ESPLAGILKALSTDCSKVQDALLAMLCQVLTGNSLDLVLSVASVEGKFKAFISGLLKCND 496
Query: 66 CSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMVE 125
+KQ+ ++ K T+ LFD++F++L SI Q YGS V+ +E GG+SFFEKWVRD MVE
Sbjct: 497 YAKQATTAEIGKAPTTRSALFDVSFMILASIAQSYGSDVILAE-GGNSFFEKWVRDYMVE 555
Query: 126 GGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKN--CPKLNCYEICLNIPAVIYDVLGA 183
+ K M+ + D +++L+ N+S+ + L +IC IPA+++ VL A
Sbjct: 556 RKKTKSPMTMVKQADPMVLEELIMAMNNSEGMYVGLKASSLRWEDICYTIPALVHQVLMA 615
Query: 184 WETSVLSSTDVKRILDAM 201
WE+ ++ ++K++LD +
Sbjct: 616 WESESIAPLEIKKMLDGL 633
>gi|195135304|ref|XP_002012074.1| Trap100 [Drosophila mojavensis]
gi|193918338|gb|EDW17205.1| Trap100 [Drosophila mojavensis]
Length = 992
Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 99/197 (50%), Positives = 129/197 (65%), Gaps = 5/197 (2%)
Query: 5 AEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFN 64
AE L+ VL+TL T +K+QD ++NVL V G SF+LIL+VA VEG+L TFV++LI+ N
Sbjct: 419 AEVPLSGVLKTLCT--NKMQD-MVNVLCHVPVGHSFELILSVATVEGRLKTFVSRLIQCN 475
Query: 65 ECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMV 124
E SKQ P + K T+ LFD++FLML SIVQ YGS VV SE DSFFEKWVR CM+
Sbjct: 476 ENSKQV-PGELGKQCITRSTLFDVSFLMLTSIVQTYGSDVVLSERC-DSFFEKWVRTCMM 533
Query: 125 EGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLGAW 184
E + K +++L + + VD+LL + +A L +ICLN+P V++ VL AW
Sbjct: 534 ERNKLKNPRQILALCEDSIVDELLLSLSKPEAAQLKPSNLTWQDICLNLPGVLHHVLIAW 593
Query: 185 ETSVLSSTDVKRILDAM 201
E LSS DVK ILD M
Sbjct: 594 EQETLSSADVKSILDNM 610
>gi|170069291|ref|XP_001869178.1| thyroid hormone receptor-associated protein TRAP100 [Culex
quinquefasciatus]
gi|167865180|gb|EDS28563.1| thyroid hormone receptor-associated protein TRAP100 [Culex
quinquefasciatus]
Length = 290
Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/163 (49%), Positives = 108/163 (66%), Gaps = 4/163 (2%)
Query: 39 SFDLILAVAAVEGKLCTFVTKLIKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQ 98
SF+LIL+VA V+GKL TF++ LIK NE SKQ P + K A + LFD++FLML IVQ
Sbjct: 5 SFELILSVATVQGKLKTFISGLIKCNEASKQI-PGEMGKVALARAALFDVSFLMLSFIVQ 63
Query: 99 RYGSKVVFSENGGDSFFEKWVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEF 158
YGS+VV +EN GDSFFEKWVR+C+VE + K M+ DQ VD+L+ NS +
Sbjct: 64 SYGSEVVLAEN-GDSFFEKWVRECLVEKHKSKSPAVMVKLCDQNKVDELIVSLNSPEG-- 120
Query: 159 KNCPKLNCYEICLNIPAVIYDVLGAWETSVLSSTDVKRILDAM 201
L +EIC NIP ++Y VL AWE LS+ ++K+ LD++
Sbjct: 121 LKGSSLKWHEICANIPGLLYQVLMAWENETLSTPEIKKFLDSL 163
>gi|426237917|ref|XP_004012904.1| PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II
transcription subunit 24 [Ovis aries]
Length = 988
Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 122/202 (60%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA A GKL +F K
Sbjct: 409 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAGGAATGKLKSFARKF 468
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGDS-FFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ GG+ FFE
Sbjct: 469 INLNEFTTHRS-EESTKAASVRALLFDISFLMLCHVAQTYGSEVILSESNTGGEVFFFET 527
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CLNI A I
Sbjct: 528 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEIK-LVQMKWHEACLNISAAI 585
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 586 LEILNAWENGVLAFESIQKITD 607
>gi|348502489|ref|XP_003438800.1| PREDICTED: mediator of RNA polymerase II transcription subunit
24-like isoform 1 [Oreochromis niloticus]
Length = 989
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 128/212 (60%), Gaps = 26/212 (12%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 408 LILRAEPTVTNILKTVDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 467
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSE---NGGDSFFEK 117
IK NE K + + SK+A + +LFDI+FLMLC +VQ YGS+V+ S+ +G FFE
Sbjct: 468 IKLNEFPKHIS-GEGSKSASVRALLFDISFLMLCHVVQTYGSEVILSDPSPSGETPFFET 526
Query: 118 WVRDCMVEGG----------RPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCY 167
W++ CM E G RP+P K V+ L+ N+S +E K ++ +
Sbjct: 527 WLQTCMPEEGKTLNPDHPCFRPEPGK----------VESLVTLLNNS-SEMKLV-QVKWH 574
Query: 168 EICLNIPAVIYDVLGAWETSVLSSTDVKRILD 199
EICL+IPA I +VL AWE VLS V++I D
Sbjct: 575 EICLSIPAAILEVLNAWENGVLSVEAVQKITD 606
>gi|348502491|ref|XP_003438801.1| PREDICTED: mediator of RNA polymerase II transcription subunit
24-like isoform 2 [Oreochromis niloticus]
Length = 976
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 128/212 (60%), Gaps = 26/212 (12%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 395 LILRAEPTVTNILKTVDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 454
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSE---NGGDSFFEK 117
IK NE K + + SK+A + +LFDI+FLMLC +VQ YGS+V+ S+ +G FFE
Sbjct: 455 IKLNEFPKHIS-GEGSKSASVRALLFDISFLMLCHVVQTYGSEVILSDPSPSGETPFFET 513
Query: 118 WVRDCMVEGG----------RPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCY 167
W++ CM E G RP+P K V+ L+ N+S +E K ++ +
Sbjct: 514 WLQTCMPEEGKTLNPDHPCFRPEPGK----------VESLVTLLNNS-SEMKLV-QVKWH 561
Query: 168 EICLNIPAVIYDVLGAWETSVLSSTDVKRILD 199
EICL+IPA I +VL AWE VLS V++I D
Sbjct: 562 EICLSIPAAILEVLNAWENGVLSVEAVQKITD 593
>gi|432923332|ref|XP_004080423.1| PREDICTED: mediator of RNA polymerase II transcription subunit
24-like isoform 1 [Oryzias latipes]
Length = 989
Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 90/212 (42%), Positives = 127/212 (59%), Gaps = 26/212 (12%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 408 LILRAEPTVTNILKTVDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 467
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN---GGDSFFEK 117
IK NE K + + SK+A + +LFDI+FLMLC +VQ YGS+VV SE G FFE
Sbjct: 468 IKLNEFPKHIS-GEGSKSASVRALLFDISFLMLCHVVQTYGSEVVLSEPSPLGETPFFET 526
Query: 118 WVRDCMVEGG----------RPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCY 167
W++ CM E G RP+P K V+ L+ N+S +E K ++ +
Sbjct: 527 WLQTCMPEEGKTLNPDHPCFRPEPGK----------VESLVTLLNNS-SEMKLV-QVKWH 574
Query: 168 EICLNIPAVIYDVLGAWETSVLSSTDVKRILD 199
EIC++IPA I ++L AWE +LS V++I D
Sbjct: 575 EICISIPAAILEILNAWENGLLSVEAVQKITD 606
>gi|84794561|ref|NP_001034151.1| mediator of RNA polymerase II transcription subunit 24 [Danio
rerio]
gi|83375896|gb|ABC17786.1| 100 kDa thyroid hormone receptor associated protein [Danio rerio]
Length = 989
Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 123/202 (60%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 408 LILRAEPTVTNILKTVDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 467
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
IK NE K + + SK+A + +LFDI+FLMLC +VQ YGS+V+ S+ S FFE
Sbjct: 468 IKLNEFPKHIS-GEGSKSASVRALLFDISFLMLCHVVQTYGSEVILSDPSPSSETPFFET 526
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ + V+ L+ NSS +E K ++ +EICL+ PA I
Sbjct: 527 WLQTCMPEEGKTLNPDHPCFRPESGKVESLVALLNSS-SEMKLV-QMKWHEICLSTPAAI 584
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
+VL AWE VLS V++I D
Sbjct: 585 LEVLNAWENGVLSVEAVQKITD 606
>gi|158706144|sp|Q2PW47.2|MED24_DANRE RecName: Full=Mediator of RNA polymerase II transcription subunit
24; AltName: Full=Mediator complex subunit 24; AltName:
Full=Protein lessen; AltName: Full=Thyroid hormone
receptor-associated protein 4 homolog; AltName:
Full=Trap100 homolog
Length = 989
Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 123/202 (60%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 408 LILRAEPTVTNILKTVDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 467
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
IK NE K + + SK+A + +LFDI+FLMLC +VQ YGS+V+ S+ S FFE
Sbjct: 468 IKLNEFPKHIS-GEGSKSASVRALLFDISFLMLCHVVQTYGSEVILSDPSPSSETPFFET 526
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ + V+ L+ NSS +E K ++ +EICL+ PA I
Sbjct: 527 WLQTCMPEEGKTLNPDHPCFRPESGKVESLVALLNSS-SEMKLV-QMKWHEICLSTPAAI 584
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
+VL AWE VLS V++I D
Sbjct: 585 LEVLNAWENGVLSVEAVQKITD 606
>gi|432923334|ref|XP_004080424.1| PREDICTED: mediator of RNA polymerase II transcription subunit
24-like isoform 2 [Oryzias latipes]
Length = 976
Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 90/212 (42%), Positives = 127/212 (59%), Gaps = 26/212 (12%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 395 LILRAEPTVTNILKTVDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 454
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN---GGDSFFEK 117
IK NE K + + SK+A + +LFDI+FLMLC +VQ YGS+VV SE G FFE
Sbjct: 455 IKLNEFPKHIS-GEGSKSASVRALLFDISFLMLCHVVQTYGSEVVLSEPSPLGETPFFET 513
Query: 118 WVRDCMVEGG----------RPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCY 167
W++ CM E G RP+P K V+ L+ N+S +E K ++ +
Sbjct: 514 WLQTCMPEEGKTLNPDHPCFRPEPGK----------VESLVTLLNNS-SEMKLV-QVKWH 561
Query: 168 EICLNIPAVIYDVLGAWETSVLSSTDVKRILD 199
EIC++IPA I ++L AWE +LS V++I D
Sbjct: 562 EICISIPAAILEILNAWENGLLSVEAVQKITD 593
>gi|46329689|gb|AAH68408.1| Med24 protein [Danio rerio]
Length = 984
Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 123/202 (60%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 403 LILRAEPTVTNILKTVDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 462
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
IK NE K + + SK+A + +LFDI+FLMLC +VQ YGS+V+ S+ S FFE
Sbjct: 463 IKLNEFPKHIS-GEGSKSASVRALLFDISFLMLCHVVQTYGSEVILSDPSPSSETPFFET 521
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ + V+ L+ NSS +E K ++ +EICL+ PA I
Sbjct: 522 WLQTCMPEEGKTLNPDHPCFRPESGKVESLVALLNSS-SEMKLV-QMKWHEICLSTPAAI 579
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
+VL AWE VLS V++I D
Sbjct: 580 LEVLNAWENGVLSVEAVQKITD 601
>gi|317419226|emb|CBN81263.1| Mediator of RNA polymerase II transcription subunit 24
[Dicentrarchus labrax]
Length = 987
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 90/212 (42%), Positives = 127/212 (59%), Gaps = 26/212 (12%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 406 LILRAEPTVTNILKTVDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 465
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSE---NGGDSFFEK 117
IK NE K + + SK+A + +LFDI+FLMLC +VQ YGS+V+ S+ +G FFE
Sbjct: 466 IKLNEFPKHIS-GEGSKSASVRALLFDISFLMLCHVVQTYGSEVILSDPSPSGETPFFET 524
Query: 118 WVRDCMVEGG----------RPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCY 167
W++ CM E G RP+P K V+ L+ N+S +E K ++ +
Sbjct: 525 WLQTCMPEEGKTLNPDHPCFRPEPGK----------VESLVTLLNNS-SEMKLV-QVKWH 572
Query: 168 EICLNIPAVIYDVLGAWETSVLSSTDVKRILD 199
EICL+ PA I +VL AWE VLS V++I D
Sbjct: 573 EICLSTPAAILEVLNAWENGVLSVEAVQKITD 604
>gi|148223491|ref|NP_001080393.1| mediator of RNA polymerase II transcription subunit 24 [Xenopus
laevis]
gi|82187375|sp|Q6PI53.1|MED24_XENLA RecName: Full=Mediator of RNA polymerase II transcription subunit
24; AltName: Full=Mediator complex subunit 24
gi|27696900|gb|AAH43802.1| Thrap4-prov protein [Xenopus laevis]
Length = 988
Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 124/203 (61%), Gaps = 7/203 (3%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 406 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 465
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
I+ NE ++ ++SK A + +LFDI+FLMLC + Q YGS+++ SE GG+ FFE
Sbjct: 466 IQLNEFTRHIG-VESSKAANVRALLFDISFLMLCHVAQTYGSEMILSEGCPGGEMPFFES 524
Query: 118 WVRDCMVEGGRP-KPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAV 176
W++ CM GR P D A V+ L+ N+S E K + +E+CL+IPA
Sbjct: 525 WMQTCMPGEGRVLNPDHPCFRHPDIAKVEALVALLNTS-TEMK-LAQTKWHEVCLSIPAA 582
Query: 177 IYDVLGAWETSVLSSTDVKRILD 199
I ++ AWE VLSS +++I D
Sbjct: 583 ILEIHNAWENGVLSSEAIQKITD 605
>gi|391344886|ref|XP_003746725.1| PREDICTED: mediator of RNA polymerase II transcription subunit
24-like [Metaseiulus occidentalis]
Length = 955
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 122/205 (59%), Gaps = 8/205 (3%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+II AEPT+ +L TLDT++++ DA L VL Q++ G SF+LIL+ AA GKL FV KL
Sbjct: 388 LIIRAEPTMKSILSTLDTDYTRNPDAPLAVLKQMITGMSFELILSAAASTGKLGMFVRKL 447
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVR 120
KFN+ Q N + ++ T+ MLFDITFLMLC I Q YG V S + DSFF +WV
Sbjct: 448 AKFND---QHN-AIVAEREGTRAMLFDITFLMLCHIAQVYGVDTVVSNDTRDSFFAQWVP 503
Query: 121 DCMVEGGRPKPYKKMLDEKDQAGVDDLLRQF----NSSDAEFKNCPKLNCYEICLNIPAV 176
DC+V+ R +KML ++ VD LL+Q + ++ + ++ ++PA
Sbjct: 504 DCLVDPNRYTCPEKMLSRANREKVDLLLQQLMRCGDPNEVLDFSATHQRWSDLAYDLPAA 563
Query: 177 IYDVLGAWETSVLSSTDVKRILDAM 201
I ++L WE +++ VK IL+ +
Sbjct: 564 IKEILIGWEQGNVTTNTVKAILEQI 588
>gi|410895759|ref|XP_003961367.1| PREDICTED: mediator of RNA polymerase II transcription subunit
24-like isoform 2 [Takifugu rubripes]
Length = 975
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 127/212 (59%), Gaps = 26/212 (12%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 394 LILRAEPTVTNILKTVDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 453
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSE---NGGDSFFEK 117
IK NE K + + SK+A + +LFDI+FLMLC +VQ YGS+V+ S+ +G FFE
Sbjct: 454 IKLNEFPKHIS-GEGSKSASVRALLFDISFLMLCHMVQTYGSEVILSDPSPSGETPFFET 512
Query: 118 WVRDCMVEGG----------RPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCY 167
W++ M E G RP+P K V+ L+ N+S AE K ++ +
Sbjct: 513 WLQTGMPEEGKTLNPDHPCFRPEPGK----------VESLVTLLNNS-AEMKLV-QVKWH 560
Query: 168 EICLNIPAVIYDVLGAWETSVLSSTDVKRILD 199
EICL+IPA I +VL AWE VLS V++I D
Sbjct: 561 EICLSIPAAILEVLNAWENGVLSVEAVQKITD 592
>gi|410895757|ref|XP_003961366.1| PREDICTED: mediator of RNA polymerase II transcription subunit
24-like isoform 1 [Takifugu rubripes]
Length = 988
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 127/212 (59%), Gaps = 26/212 (12%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 407 LILRAEPTVTNILKTVDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 466
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSE---NGGDSFFEK 117
IK NE K + + SK+A + +LFDI+FLMLC +VQ YGS+V+ S+ +G FFE
Sbjct: 467 IKLNEFPKHIS-GEGSKSASVRALLFDISFLMLCHMVQTYGSEVILSDPSPSGETPFFET 525
Query: 118 WVRDCMVEGG----------RPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCY 167
W++ M E G RP+P K V+ L+ N+S AE K ++ +
Sbjct: 526 WLQTGMPEEGKTLNPDHPCFRPEPGK----------VESLVTLLNNS-AEMKLV-QVKWH 573
Query: 168 EICLNIPAVIYDVLGAWETSVLSSTDVKRILD 199
EICL+IPA I +VL AWE VLS V++I D
Sbjct: 574 EICLSIPAAILEVLNAWENGVLSVEAVQKITD 605
>gi|71897119|ref|NP_001026534.1| mediator of RNA polymerase II transcription subunit 24 [Gallus
gallus]
gi|82075180|sp|Q5F3M0.1|MED24_CHICK RecName: Full=Mediator of RNA polymerase II transcription subunit
24; AltName: Full=Mediator complex subunit 24
gi|60098867|emb|CAH65264.1| hypothetical protein RCJMB04_13m7 [Gallus gallus]
Length = 986
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 125/202 (61%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 406 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFAWKF 465
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGD---SFFEK 117
IK NE +K + ++ SK+A + +LFDI+FLMLC + Q YGS+V+ SE+ FFE
Sbjct: 466 IKLNEFTKHIS-TENSKSAPVRALLFDISFLMLCHVAQTYGSEVILSESRPADEVPFFET 524
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W+ CM E G+ D V+ L+ N+S +E K ++N +E+CL+I A I
Sbjct: 525 WMLTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQINWHEVCLSISAAI 582
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE SVL+ +++I D
Sbjct: 583 LEILNAWENSVLTFESIQKITD 604
>gi|348562359|ref|XP_003466978.1| PREDICTED: mediator of RNA polymerase II transcription subunit
24-like isoform 1 [Cavia porcellus]
Length = 989
Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 121/202 (59%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 409 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 468
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
I NE + P +++KTA + +LFDI+FLMLC + Q YGS+V+ SE S FFE
Sbjct: 469 INLNEFTTH-GPGESTKTASVRALLFDISFLMLCHVAQTYGSEVILSEASSGSEVPFFET 527
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 528 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMKLV-QMKWHEACLSISAAI 585
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 586 LEILNAWENGVLAFESIQKITD 607
>gi|348562361|ref|XP_003466979.1| PREDICTED: mediator of RNA polymerase II transcription subunit
24-like isoform 2 [Cavia porcellus]
Length = 976
Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 121/202 (59%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 396 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 455
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
I NE + P +++KTA + +LFDI+FLMLC + Q YGS+V+ SE S FFE
Sbjct: 456 INLNEFTTH-GPGESTKTASVRALLFDISFLMLCHVAQTYGSEVILSEASSGSEVPFFET 514
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 515 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMKLV-QMKWHEACLSISAAI 572
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 573 LEILNAWENGVLAFESIQKITD 594
>gi|301616949|ref|XP_002937902.1| PREDICTED: mediator of RNA polymerase II transcription subunit
24-like isoform 1 [Xenopus (Silurana) tropicalis]
Length = 993
Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 122/203 (60%), Gaps = 7/203 (3%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 411 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 470
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSE---NGGDSFFEK 117
I+ NE ++ ++SK A + +LFDI+FLMLC + Q YGS+++ SE +G FFE
Sbjct: 471 IQLNEFTRHIG-VESSKAANVRALLFDISFLMLCHVAQTYGSEMILSEGCPSGEMPFFES 529
Query: 118 WVRDCMVEGGRP-KPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAV 176
W++ CM GR P D A V+ L+ N+S E K + +E+CL+IPA
Sbjct: 530 WMQTCMPGEGRVLNPDHPCFRHPDIAKVEALVALLNTS-TEMK-LAQTKWHEVCLSIPAA 587
Query: 177 IYDVLGAWETSVLSSTDVKRILD 199
I ++ AWE VLS +++I D
Sbjct: 588 ILEIHNAWENGVLSFEAIQKITD 610
>gi|301616951|ref|XP_002937903.1| PREDICTED: mediator of RNA polymerase II transcription subunit
24-like isoform 2 [Xenopus (Silurana) tropicalis]
Length = 975
Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 122/203 (60%), Gaps = 7/203 (3%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 393 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 452
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSE---NGGDSFFEK 117
I+ NE ++ ++SK A + +LFDI+FLMLC + Q YGS+++ SE +G FFE
Sbjct: 453 IQLNEFTRHIG-VESSKAANVRALLFDISFLMLCHVAQTYGSEMILSEGCPSGEMPFFES 511
Query: 118 WVRDCMVEGGRP-KPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAV 176
W++ CM GR P D A V+ L+ N+S E K + +E+CL+IPA
Sbjct: 512 WMQTCMPGEGRVLNPDHPCFRHPDIAKVEALVALLNTS-TEMK-LAQTKWHEVCLSIPAA 569
Query: 177 IYDVLGAWETSVLSSTDVKRILD 199
I ++ AWE VLS +++I D
Sbjct: 570 ILEIHNAWENGVLSFEAIQKITD 592
>gi|260811970|ref|XP_002600694.1| hypothetical protein BRAFLDRAFT_118555 [Branchiostoma floridae]
gi|229285983|gb|EEN56706.1| hypothetical protein BRAFLDRAFT_118555 [Branchiostoma floridae]
Length = 964
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 123/202 (60%), Gaps = 7/202 (3%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +++T++ ++SK QD +L VL +++GKSF+LI A AA GKL F ++L
Sbjct: 370 LILRAEPTVTNIIKTMEADYSKNQDMILGVLGHMMSGKSFELITAAAATTGKLHMFASRL 429
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGG---DSFFEK 117
IKFNE +K S+ + SK + ++ +LFDI+FLML I YG+++V + + G + FFE
Sbjct: 430 IKFNEFAKHSS-GEGSKVSLSRAVLFDISFLMLGYICVMYGTEIVCTTSAGAGNEPFFET 488
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
WV + + +P + M D A V+ LL Q NS E K + ++C NIP I
Sbjct: 489 WVGQSLPIDQKCRPVENMA-HPDPARVESLLTQINSGQ-EIKTSLQ-RWQDVCTNIPFAI 545
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE +S+ V++ D
Sbjct: 546 QEILTAWENGAVSADAVQKFCD 567
>gi|47226019|emb|CAG04393.1| unnamed protein product [Tetraodon nigroviridis]
Length = 960
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/212 (41%), Positives = 126/212 (59%), Gaps = 26/212 (12%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 379 LILRAEPTVTNILKTVDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 438
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSE---NGGDSFFEK 117
IK NE K + + SK+A + +LFDI+FLMLC +VQ YGS+V+ S+ +G FFE
Sbjct: 439 IKLNEFPKHIS-GEGSKSASVRALLFDISFLMLCHMVQTYGSEVILSDPSPSGETPFFET 497
Query: 118 WVRDCMVEGG----------RPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCY 167
W++ M E G RP+P K V+ L+ N+S +E K ++ +
Sbjct: 498 WLQTGMPEEGKTLNPDHPCFRPEPGK----------VESLVTLLNNS-SEMKLV-QVKWH 545
Query: 168 EICLNIPAVIYDVLGAWETSVLSSTDVKRILD 199
EIC +IPA I +VL AWE VLS V++I D
Sbjct: 546 EICHSIPAAILEVLNAWENGVLSVEAVQKITD 577
>gi|359076881|ref|XP_003587476.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24
[Bos taurus]
Length = 989
Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 123/202 (60%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 409 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 468
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGDS-FFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ GG+ FFE
Sbjct: 469 INLNEFTTHRS-EESTKAASVRALLFDISFLMLCHVAQTYGSEVILSESNTGGEVFFFET 527
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CLNI A I
Sbjct: 528 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEIK-LVQMKWHEACLNISAAI 585
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 586 LEILNAWENGVLAFESIQKITD 607
>gi|417405523|gb|JAA49471.1| Putative mediator of rna polymerase ii transcription subunit 24
[Desmodus rotundus]
Length = 989
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 123/202 (60%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 409 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 468
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
I NE + + +++K+A + +LFDI+FLMLC + Q YGS+V+ SE+ + FFE
Sbjct: 469 INLNEFTTHGS-EESTKSASVRALLFDISFLMLCHVAQTYGSEVILSESSTGAEVPFFET 527
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++N +E CL+I A I
Sbjct: 528 WIQTCMPEEGKILNPDHPCFWPDSTKVESLVALLNNS-SEMK-LVQMNWHEACLSISAAI 585
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 586 LEILNAWENGVLAFESIQKITD 607
>gi|358417399|ref|XP_003583633.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24
[Bos taurus]
Length = 989
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 123/202 (60%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 409 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 468
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGDS-FFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ GG+ FFE
Sbjct: 469 INLNEFTTHRS-EESTKAASVRALLFDISFLMLCHVAQTYGSEVILSESNTGGEVFFFET 527
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CLNI A I
Sbjct: 528 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEIK-LVQMKWHEACLNISAAI 585
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 586 LEILNAWENGVLAFESIQKITD 607
>gi|431890673|gb|ELK01552.1| Mediator of RNA polymerase II transcription subunit 24 [Pteropus
alecto]
Length = 988
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 122/202 (60%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 411 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 470
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ + FFE
Sbjct: 471 INLNEFTTHGS-EESTKAAPVRALLFDISFLMLCHVAQTYGSEVIMSESSTGAEVPFFET 529
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++N +E CL+I A I
Sbjct: 530 WIQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMKLV-QMNWHEACLSISAAI 587
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 588 LEILNAWENGVLAFESIQKITD 609
>gi|334323039|ref|XP_003340332.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24
isoform 2 [Monodelphis domestica]
Length = 975
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 121/202 (59%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 395 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 454
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN---GGDSFFEK 117
I NE +K N ++ SK A + +LFDI+FLMLC + Q YGS+V+ SE+ G FFE
Sbjct: 455 ISLNEFTKHIN-AENSKAASVRALLFDISFLMLCHVAQTYGSEVILSESSTVGEVPFFET 513
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ E CL+I A I
Sbjct: 514 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWQEACLSISAAI 571
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 572 LEILNAWENGVLAFESIQKITD 593
>gi|334323037|ref|XP_001370359.2| PREDICTED: mediator of RNA polymerase II transcription subunit 24
isoform 1 [Monodelphis domestica]
Length = 988
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 121/202 (59%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 408 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 467
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN---GGDSFFEK 117
I NE +K N ++ SK A + +LFDI+FLMLC + Q YGS+V+ SE+ G FFE
Sbjct: 468 ISLNEFTKHIN-AENSKAASVRALLFDISFLMLCHVAQTYGSEVILSESSTVGEVPFFET 526
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ E CL+I A I
Sbjct: 527 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWQEACLSISAAI 584
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 585 LEILNAWENGVLAFESIQKITD 606
>gi|5359714|gb|AAD42776.1|AF126543_1 100 kDa thyroid hormone receptor associated protein [Mus musculus]
Length = 956
Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 119/202 (58%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 376 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 435
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
I NE + + +++KTA + +LFDI+FLMLC + YGS+V+ SE+ FFE
Sbjct: 436 INLNEFTTHGS-GESTKTASVRALLFDISFLMLCHVAHTYGSEVILSESSSGEEVPFFET 494
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ + D V+ L+ N+S N ++ +E CL+I A I
Sbjct: 495 WMQTCMPEEGKILNPEHPCFRPDSTKVESLVALLNNSSE--MNLVQMKWHEACLSISAAI 552
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 553 LEILNAWENGVLAFESIQKITD 574
>gi|344286005|ref|XP_003414750.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24
isoform 1 [Loxodonta africana]
Length = 989
Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 121/202 (59%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 409 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 468
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
I NE + N +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ + FFE
Sbjct: 469 IHLNEFTTHGN-EESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESSTGAEVPFFET 527
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 528 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMKLV-QMKWHEACLSISAAI 585
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 586 LEILNAWENGVLAFESIQKITD 607
>gi|344286007|ref|XP_003414751.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24
isoform 2 [Loxodonta africana]
Length = 976
Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 121/202 (59%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 396 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 455
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
I NE + N +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ + FFE
Sbjct: 456 IHLNEFTTHGN-EESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESSTGAEVPFFET 514
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 515 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMKLV-QMKWHEACLSISAAI 572
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 573 LEILNAWENGVLAFESIQKITD 594
>gi|149054127|gb|EDM05944.1| thyroid hormone receptor associated protein 4, isoform CRA_a
[Rattus norvegicus]
Length = 1006
Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 121/202 (59%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 426 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 485
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
I NE + + +++KTA + +LFDI+FLMLC + Q YGS+V+ SE+ FFE
Sbjct: 486 INLNEFTTHGS-GESTKTASVRALLFDISFLMLCHVAQTYGSEVILSESSSGEEVPFFET 544
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 545 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 602
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 603 LEILNAWENGVLAFESIQKITD 624
>gi|19548750|gb|AAL90772.1| KIAA0130-like protein [Mus musculus]
gi|19548752|gb|AAL90773.1| KIAA0130-like protein [Mus musculus]
gi|148684216|gb|EDL16163.1| thyroid hormone receptor associated protein 4, isoform CRA_c [Mus
musculus]
Length = 956
Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 121/202 (59%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 376 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 435
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
I NE + + +++KTA + +LFDI+FLMLC + Q YGS+V+ SE+ FFE
Sbjct: 436 INLNEFTTHGS-GESTKTASVRALLFDISFLMLCHVAQTYGSEVILSESSSGEEVPFFET 494
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 495 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMKLV-QMKWHEACLSISAAI 552
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 553 LEILNAWENGVLAFESIQKITD 574
>gi|440904251|gb|ELR54790.1| Mediator of RNA polymerase II transcription subunit 24 [Bos
grunniens mutus]
Length = 990
Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 123/202 (60%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 410 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSRDLLLAAAAATGKLKSFARKF 469
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGDS-FFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ GG+ FFE
Sbjct: 470 INLNEFTTHRS-EESTKAASVRALLFDISFLMLCHVAQTYGSEVILSESNTGGEVFFFET 528
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CLNI A I
Sbjct: 529 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEIK-LVQMKWHEACLNISAAI 586
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 587 LEILNAWENGVLAFESIQKITD 608
>gi|148684214|gb|EDL16161.1| thyroid hormone receptor associated protein 4, isoform CRA_a [Mus
musculus]
Length = 1001
Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 121/202 (59%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 421 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 480
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
I NE + + +++KTA + +LFDI+FLMLC + Q YGS+V+ SE+ FFE
Sbjct: 481 INLNEFTTHGS-GESTKTASVRALLFDISFLMLCHVAQTYGSEVILSESSSGEEVPFFET 539
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 540 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMKLV-QMKWHEACLSISAAI 597
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 598 LEILNAWENGVLAFESIQKITD 619
>gi|77539756|ref|NP_001029251.1| mediator of RNA polymerase II transcription subunit 24 [Rattus
norvegicus]
gi|81907913|sp|Q4V8B3.1|MED24_RAT RecName: Full=Mediator of RNA polymerase II transcription subunit
24; AltName: Full=Mediator complex subunit 24; AltName:
Full=Thyroid hormone receptor-associated protein 4
gi|66912003|gb|AAH97461.1| Mediator complex subunit 24 [Rattus norvegicus]
Length = 987
Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 121/202 (59%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 407 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 466
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
I NE + + +++KTA + +LFDI+FLMLC + Q YGS+V+ SE+ FFE
Sbjct: 467 INLNEFTTHGS-GESTKTASVRALLFDISFLMLCHVAQTYGSEVILSESSSGEEVPFFET 525
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 526 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 583
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 584 LEILNAWENGVLAFESIQKITD 605
>gi|149054128|gb|EDM05945.1| thyroid hormone receptor associated protein 4, isoform CRA_b
[Rattus norvegicus]
Length = 749
Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 121/202 (59%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 407 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 466
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
I NE + + +++KTA + +LFDI+FLMLC + Q YGS+V+ SE+ FFE
Sbjct: 467 INLNEFTTHGS-GESTKTASVRALLFDISFLMLCHVAQTYGSEVILSESSSGEEVPFFET 525
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 526 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMKLV-QMKWHEACLSISAAI 583
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 584 LEILNAWENGVLAFESIQKITD 605
>gi|12860805|dbj|BAB32051.1| unnamed protein product [Mus musculus]
Length = 758
Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 121/202 (59%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 407 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 466
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
I NE + + +++KTA + +LFDI+FLMLC + Q YGS+V+ SE+ FFE
Sbjct: 467 INLNEFTTHGS-GESTKTASVRALLFDISFLMLCHVAQTYGSEVILSESSSGEEVPFFET 525
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 526 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMKLV-QMKWHEACLSISAAI 583
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 584 LEILNAWENGVLAFESIQKITD 605
>gi|148684215|gb|EDL16162.1| thyroid hormone receptor associated protein 4, isoform CRA_b [Mus
musculus]
Length = 758
Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 121/202 (59%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 407 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 466
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
I NE + + +++KTA + +LFDI+FLMLC + Q YGS+V+ SE+ FFE
Sbjct: 467 INLNEFTTHGS-GESTKTASVRALLFDISFLMLCHVAQTYGSEVILSESSSGEEVPFFET 525
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 526 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMKLV-QMKWHEACLSISAAI 583
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 584 LEILNAWENGVLAFESIQKITD 605
>gi|119220579|ref|NP_035999.2| mediator of RNA polymerase II transcription subunit 24 [Mus
musculus]
gi|81880096|sp|Q99K74.1|MED24_MOUSE RecName: Full=Mediator of RNA polymerase II transcription subunit
24; AltName: Full=Mediator complex subunit 24; AltName:
Full=Thyroid hormone receptor-associated protein 4;
AltName: Full=Thyroid hormone receptor-associated
protein complex 100 kDa component; Short=Trap100;
Short=mTRAP100
gi|13529314|gb|AAH05409.1| Med24 protein [Mus musculus]
gi|74185659|dbj|BAE32717.1| unnamed protein product [Mus musculus]
Length = 987
Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 121/202 (59%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 407 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 466
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
I NE + + +++KTA + +LFDI+FLMLC + Q YGS+V+ SE+ FFE
Sbjct: 467 INLNEFTTHGS-GESTKTASVRALLFDISFLMLCHVAQTYGSEVILSESSSGEEVPFFET 525
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 526 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 583
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 584 LEILNAWENGVLAFESIQKITD 605
>gi|149723866|ref|XP_001500771.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24
isoform 2 [Equus caballus]
Length = 976
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 121/202 (59%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 396 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 455
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ + FFE
Sbjct: 456 INLNEFTTHGS-GESTKAASVRALLFDISFLMLCHVAQTYGSEVILSESSAGAEVPFFET 514
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 515 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMKLV-QMKWHEACLSISAAI 572
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 573 LEILNAWENGVLAFESIQKITD 594
>gi|149723864|ref|XP_001500748.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24
isoform 1 [Equus caballus]
Length = 989
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 121/202 (59%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 409 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 468
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ + FFE
Sbjct: 469 INLNEFTTHGS-GESTKAASVRALLFDISFLMLCHVAQTYGSEVILSESSAGAEVPFFET 527
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 528 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMKLV-QMKWHEACLSISAAI 585
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 586 LEILNAWENGVLAFESIQKITD 607
>gi|410980963|ref|XP_003996843.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24
[Felis catus]
Length = 989
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 120/202 (59%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 409 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 468
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
I NE + N + +K A + +LFDI+FLMLC + Q YGS+V+ SE+ + FFE
Sbjct: 469 INLNEFTTHGN-EELAKAASVRALLFDISFLMLCHVAQTYGSEVILSESSSGAQVPFFET 527
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 528 WMQTCMPEEGKILNPDHPCFWPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 585
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 586 LEILNAWENGVLAFESIQKITD 607
>gi|355701788|gb|AES01793.1| mediator complex subunit 24 [Mustela putorius furo]
Length = 604
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 120/202 (59%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 24 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 83
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
I NE + N + +K A + +LFDI+FLMLC + Q YGS+V+ SE+ + FFE
Sbjct: 84 INLNEFTTHGN-EELAKAASVRALLFDISFLMLCHVAQTYGSEVILSESSTGAQVPFFET 142
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 143 WMQTCMPEEGKILNPDHPCFWPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 200
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 201 LEILNAWENGVLAFESIQKITD 222
>gi|301787957|ref|XP_002929395.1| PREDICTED: mediator of RNA polymerase II transcription subunit
24-like isoform 2 [Ailuropoda melanoleuca]
Length = 976
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 120/202 (59%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 396 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 455
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
I NE + N + +K A + +LFDI+FLMLC + Q YGS+V+ SE+ + FFE
Sbjct: 456 INLNEFTTHGN-EELAKAASVRALLFDISFLMLCHVAQTYGSEVILSESSTGAQVPFFET 514
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 515 WMQTCMPEEGKILNPDHPCFWPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 572
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 573 LEILNAWENGVLAFESIQKITD 594
>gi|301787955|ref|XP_002929394.1| PREDICTED: mediator of RNA polymerase II transcription subunit
24-like isoform 1 [Ailuropoda melanoleuca]
gi|281347796|gb|EFB23380.1| hypothetical protein PANDA_019562 [Ailuropoda melanoleuca]
Length = 989
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 120/202 (59%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 409 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 468
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
I NE + N + +K A + +LFDI+FLMLC + Q YGS+V+ SE+ + FFE
Sbjct: 469 INLNEFTTHGN-EELAKAASVRALLFDISFLMLCHVAQTYGSEVILSESSTGAQVPFFET 527
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 528 WMQTCMPEEGKILNPDHPCFWPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 585
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 586 LEILNAWENGVLAFESIQKITD 607
>gi|73966048|ref|XP_863448.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24
isoform 6 [Canis lupus familiaris]
Length = 989
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 120/202 (59%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 409 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 468
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
I NE + N + +K A + +LFDI+FLMLC + Q YGS+V+ SE+ + FFE
Sbjct: 469 INLNEFTTHGN-EELAKAASVRALLFDISFLMLCHVAQTYGSEVILSESSTGAQVPFFET 527
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 528 WMQTCMPEEGKILNPDHPCFWPDSTKVESLVALLNNS-SEMKLV-QMKWHEACLSISAAI 585
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 586 LEILNAWENGVLAFESIQKITD 607
>gi|395826496|ref|XP_003786454.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24
isoform 1 [Otolemur garnettii]
Length = 989
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 120/202 (59%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 409 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 468
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
I NE + + D K A + +LFDI+FLMLC + Q YGS+V+ SE+ G + FFE
Sbjct: 469 INLNEFTTHGS-EDNPKAASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAEVPFFET 527
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 528 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMKLV-QMKWHEACLSISAAI 585
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 586 LEILNAWENGVLAFESIQKITD 607
>gi|297272887|ref|XP_001087996.2| PREDICTED: mediator of RNA polymerase II transcription subunit
24-like [Macaca mulatta]
Length = 1051
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 122/202 (60%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 471 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 530
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ G D FFE
Sbjct: 531 INLNEFTTYGS-EESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGADVPFFET 589
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 590 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMKLV-QMKWHEACLSISAAI 647
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 648 LEILNAWENGVLAFESIQKITD 669
>gi|383423301|gb|AFH34864.1| mediator of RNA polymerase II transcription subunit 24 isoform 1
[Macaca mulatta]
Length = 988
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 122/202 (60%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 409 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 468
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ G D FFE
Sbjct: 469 INLNEFTTYGS-EESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGADVPFFET 527
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 528 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 585
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 586 LEILNAWENGVLAFESIQKITD 607
>gi|402900074|ref|XP_003913005.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24
isoform 4 [Papio anubis]
Length = 899
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 122/202 (60%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 319 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 378
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ G D FFE
Sbjct: 379 INLNEFTTYGS-EESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGADVPFFET 437
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 438 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMKLV-QMKWHEACLSISAAI 495
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 496 LEILNAWENGVLAFESIQKITD 517
>gi|395826498|ref|XP_003786455.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24
isoform 2 [Otolemur garnettii]
Length = 976
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 120/202 (59%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 396 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 455
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
I NE + + D K A + +LFDI+FLMLC + Q YGS+V+ SE+ G + FFE
Sbjct: 456 INLNEFTTHGS-EDNPKAASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAEVPFFET 514
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 515 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMKLV-QMKWHEACLSISAAI 572
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 573 LEILNAWENGVLAFESIQKITD 594
>gi|402900068|ref|XP_003913002.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24
isoform 1 [Papio anubis]
Length = 989
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 122/202 (60%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 409 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 468
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ G D FFE
Sbjct: 469 INLNEFTTYGS-EESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGADVPFFET 527
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 528 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 585
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 586 LEILNAWENGVLAFESIQKITD 607
>gi|402900070|ref|XP_003913003.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24
isoform 2 [Papio anubis]
gi|402900072|ref|XP_003913004.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24
isoform 3 [Papio anubis]
Length = 976
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 122/202 (60%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 396 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 455
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ G D FFE
Sbjct: 456 INLNEFTTYGS-EESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGADVPFFET 514
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 515 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 572
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 573 LEILNAWENGVLAFESIQKITD 594
>gi|380818482|gb|AFE81114.1| mediator of RNA polymerase II transcription subunit 24 isoform 1
[Macaca mulatta]
gi|380818484|gb|AFE81115.1| mediator of RNA polymerase II transcription subunit 24 isoform 1
[Macaca mulatta]
gi|384950620|gb|AFI38915.1| mediator of RNA polymerase II transcription subunit 24 isoform 1
[Macaca mulatta]
gi|384950622|gb|AFI38916.1| mediator of RNA polymerase II transcription subunit 24 isoform 1
[Macaca mulatta]
Length = 989
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 122/202 (60%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 409 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 468
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ G D FFE
Sbjct: 469 INLNEFTTYGS-EESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGADVPFFET 527
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 528 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 585
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 586 LEILNAWENGVLAFESIQKITD 607
>gi|194389514|dbj|BAG61718.1| unnamed protein product [Homo sapiens]
Length = 930
Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 122/202 (60%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 350 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 409
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ G + FFE
Sbjct: 410 INLNEFTTYGS-EESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAEVPFFET 468
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 469 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 526
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 527 LEILNAWENGVLAFESIQKITD 548
>gi|403304591|ref|XP_003942878.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24
isoform 5 [Saimiri boliviensis boliviensis]
Length = 899
Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 121/202 (59%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 319 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 378
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ + FFE
Sbjct: 379 INLNEFTTYGS-EESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRSGAEVPFFET 437
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 438 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMKLV-QMKWHEACLSISAAI 495
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 496 LEILNAWENGVLAFESIQKITD 517
>gi|291405971|ref|XP_002719394.1| PREDICTED: mediator complex subunit 24 [Oryctolagus cuniculus]
Length = 978
Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 121/204 (59%), Gaps = 7/204 (3%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 395 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 454
Query: 61 IKFNECSK--QSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FF 115
I NE ++ +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ + FF
Sbjct: 455 INLNELNEFTTHGNGESTKAASVRALLFDISFLMLCHVAQTYGSEVILSESSPGAEVPFF 514
Query: 116 EKWVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPA 175
E W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A
Sbjct: 515 ETWMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMKLV-QMKWHEACLSISA 572
Query: 176 VIYDVLGAWETSVLSSTDVKRILD 199
I ++L AWE VL+ +++I D
Sbjct: 573 AILEILNAWENGVLAFESIQKITD 596
>gi|403304583|ref|XP_003942874.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24
isoform 1 [Saimiri boliviensis boliviensis]
gi|403304585|ref|XP_003942875.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24
isoform 2 [Saimiri boliviensis boliviensis]
Length = 989
Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 121/202 (59%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 409 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 468
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ + FFE
Sbjct: 469 INLNEFTTYGS-EESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRSGAEVPFFET 527
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 528 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 585
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 586 LEILNAWENGVLAFESIQKITD 607
>gi|351709119|gb|EHB12038.1| Mediator of RNA polymerase II transcription subunit 24
[Heterocephalus glaber]
Length = 1042
Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 119/202 (58%), Gaps = 21/202 (10%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 435 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 494
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
I NE + P +++KTA + +LFDI+FLMLC + Q YGS+V+ SE + FFE
Sbjct: 495 INLNEFTTH-GPGESTKTASVRALLFDISFLMLCHVAQTYGSEVILSEASSGAEVPFFET 553
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G K+L+ D + +S+ E ++ +E CL+I A I
Sbjct: 554 WMQTCMPEEG------KILNP------DHPCFRPDSTKVE-----QMKWHEACLSISAAI 596
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 597 LEILNAWENGVLAFESIQKITD 618
>gi|443698632|gb|ELT98529.1| hypothetical protein CAPTEDRAFT_205731 [Capitella teleta]
Length = 1006
Score = 132 bits (332), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 118/202 (58%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AE T +L+TLD +FSK QD LL V S +L+GKSF+LI+ A G+L +F KL
Sbjct: 429 LILRAEQTAFNLLKTLDADFSKTQDGLLGVCSGMLSGKSFELIMTAFAAAGQLQSFAMKL 488
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGG-DSFFEKWV 119
I+ NE ++QS ++ K AQT+ +LFDI+FLMLC I Y S+V+FS +S F +WV
Sbjct: 489 IRLNEFARQST-GESPKGAQTRALLFDISFLMLCHIAMLYRSEVIFSSPEAVNSLFVQWV 547
Query: 120 RDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYD 179
C+ E G K + DQ+ VD L+ Q + E K E+ ++P VI
Sbjct: 548 TRCLPENGHFK-SAVLQQPPDQSKVDMLIGQLKA--GELKTG-LTKWSEVIHHMPFVIQA 603
Query: 180 VLGAWETSVLSSTDVKRILDAM 201
+L AWE ++ VK ++ ++
Sbjct: 604 ILTAWEAQAINEDRVKALMTSV 625
>gi|403304587|ref|XP_003942876.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24
isoform 3 [Saimiri boliviensis boliviensis]
gi|403304589|ref|XP_003942877.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24
isoform 4 [Saimiri boliviensis boliviensis]
Length = 976
Score = 132 bits (332), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 121/202 (59%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 396 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 455
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ + FFE
Sbjct: 456 INLNEFTTYGS-EESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRSGAEVPFFET 514
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 515 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 572
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 573 LEILNAWENGVLAFESIQKITD 594
>gi|397522882|ref|XP_003831477.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24
isoform 4 [Pan paniscus]
Length = 899
Score = 132 bits (332), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 122/202 (60%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 319 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 378
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ G + FFE
Sbjct: 379 INLNEFTTYGS-EESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAEVPFFET 437
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 438 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMKLV-QMKWHEACLSISAAI 495
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 496 LEILNAWENGVLAFESIQKITD 517
>gi|297701311|ref|XP_002827662.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24
isoform 3 [Pongo abelii]
gi|297701313|ref|XP_002827663.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24
isoform 4 [Pongo abelii]
Length = 976
Score = 132 bits (332), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 122/202 (60%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 396 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 455
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ G + FFE
Sbjct: 456 INLNEFTTYGS-EESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAEVPFFET 514
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 515 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 572
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 573 LEILNAWENGVLAFESIQKITD 594
>gi|426348343|ref|XP_004041796.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24
isoform 4 [Gorilla gorilla gorilla]
Length = 899
Score = 132 bits (332), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 122/202 (60%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 319 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 378
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ G + FFE
Sbjct: 379 INLNEFTTYGS-EESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAEVPFFET 437
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 438 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMKLV-QMKWHEACLSISAAI 495
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 496 LEILNAWENGVLAFESIQKITD 517
>gi|397522876|ref|XP_003831474.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24
isoform 1 [Pan paniscus]
Length = 989
Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 122/202 (60%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 409 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 468
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ G + FFE
Sbjct: 469 INLNEFTTYGS-EESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAEVPFFET 527
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 528 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 585
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 586 LEILNAWENGVLAFESIQKITD 607
>gi|119581033|gb|EAW60629.1| thyroid hormone receptor associated protein 4, isoform CRA_a [Homo
sapiens]
Length = 1014
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 122/202 (60%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 434 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 493
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ G + FFE
Sbjct: 494 INLNEFTTYGS-EESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAEVPFFET 552
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 553 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 610
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 611 LEILNAWENGVLAFESIQKITD 632
>gi|40788872|dbj|BAA09479.2| KIAA0130 [Homo sapiens]
Length = 1006
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 122/202 (60%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 426 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 485
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ G + FFE
Sbjct: 486 INLNEFTTYGS-EESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAEVPFFET 544
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 545 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMKLV-QMKWHEACLSISAAI 602
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 603 LEILNAWENGVLAFESIQKITD 624
>gi|297701309|ref|XP_002827661.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24
isoform 2 [Pongo abelii]
Length = 989
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 122/202 (60%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 409 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 468
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ G + FFE
Sbjct: 469 INLNEFTTYGS-EESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAEVPFFET 527
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 528 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 585
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 586 LEILNAWENGVLAFESIQKITD 607
>gi|193785646|dbj|BAG51081.1| unnamed protein product [Homo sapiens]
Length = 976
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 122/202 (60%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 396 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 455
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ G + FFE
Sbjct: 456 INLNEFTTYGS-EESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAEVPFFET 514
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 515 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 572
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 573 LEILNAWENGVLAFESIQKITD 594
>gi|119220575|ref|NP_001072986.1| mediator of RNA polymerase II transcription subunit 24 isoform 2
[Homo sapiens]
gi|392583926|ref|NP_001254726.1| mediator of RNA polymerase II transcription subunit 24 isoform 2
[Homo sapiens]
gi|426348339|ref|XP_004041794.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24
isoform 2 [Gorilla gorilla gorilla]
gi|426348341|ref|XP_004041795.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24
isoform 3 [Gorilla gorilla gorilla]
gi|158255516|dbj|BAF83729.1| unnamed protein product [Homo sapiens]
Length = 976
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 122/202 (60%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 396 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 455
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ G + FFE
Sbjct: 456 INLNEFTTYGS-EESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAEVPFFET 514
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 515 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 572
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 573 LEILNAWENGVLAFESIQKITD 594
>gi|41281496|ref|NP_055630.2| mediator of RNA polymerase II transcription subunit 24 isoform 1
[Homo sapiens]
gi|332847683|ref|XP_001171125.2| PREDICTED: mediator of RNA polymerase II transcription subunit 24
isoform 11 [Pan troglodytes]
gi|426348337|ref|XP_004041793.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24
isoform 1 [Gorilla gorilla gorilla]
gi|21617826|sp|O75448.1|MED24_HUMAN RecName: Full=Mediator of RNA polymerase II transcription subunit
24; AltName: Full=Activator-recruited cofactor 100 kDa
component; Short=ARC100; AltName: Full=Cofactor required
for Sp1 transcriptional activation subunit 4; Short=CRSP
complex subunit 4; AltName: Full=Mediator complex
subunit 24; AltName: Full=Thyroid hormone
receptor-associated protein 4; AltName: Full=Thyroid
hormone receptor-associated protein complex 100 kDa
component; Short=Trap100; Short=hTRAP100; AltName:
Full=Vitamin D3 receptor-interacting protein complex 100
kDa component; Short=DRIP100
gi|3319292|gb|AAC39855.1| thyroid hormone receptor-associated protein complex component
TRAP100 [Homo sapiens]
gi|15030230|gb|AAH11375.1| MED24 protein [Homo sapiens]
gi|119581034|gb|EAW60630.1| thyroid hormone receptor associated protein 4, isoform CRA_b [Homo
sapiens]
gi|123980358|gb|ABM82008.1| thyroid hormone receptor associated protein 4 [synthetic construct]
gi|123995177|gb|ABM85190.1| thyroid hormone receptor associated protein 4 [synthetic construct]
gi|410225922|gb|JAA10180.1| mediator complex subunit 24 [Pan troglodytes]
gi|410247344|gb|JAA11639.1| mediator complex subunit 24 [Pan troglodytes]
gi|410308764|gb|JAA32982.1| mediator complex subunit 24 [Pan troglodytes]
Length = 989
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 122/202 (60%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 409 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 468
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ G + FFE
Sbjct: 469 INLNEFTTYGS-EESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAEVPFFET 527
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 528 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 585
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 586 LEILNAWENGVLAFESIQKITD 607
>gi|168278517|dbj|BAG11138.1| thyroid hormone receptor-associated protein complex 100 kDa
component [synthetic construct]
Length = 989
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 122/202 (60%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 409 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 468
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ G + FFE
Sbjct: 469 INLNEFTTYGS-EESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAEVPFFET 527
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 528 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 585
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 586 LEILNAWENGVLAFESIQKITD 607
>gi|397522878|ref|XP_003831475.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24
isoform 2 [Pan paniscus]
gi|397522880|ref|XP_003831476.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24
isoform 3 [Pan paniscus]
Length = 976
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 122/202 (60%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 396 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 455
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ G + FFE
Sbjct: 456 INLNEFTTYGS-EESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAEVPFFET 514
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 515 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 572
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 573 LEILNAWENGVLAFESIQKITD 594
>gi|119581035|gb|EAW60631.1| thyroid hormone receptor associated protein 4, isoform CRA_c [Homo
sapiens]
Length = 1016
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 122/202 (60%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 436 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 495
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ G + FFE
Sbjct: 496 INLNEFTTYGS-EESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAEVPFFET 554
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 555 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 612
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 613 LEILNAWENGVLAFESIQKITD 634
>gi|355754118|gb|EHH58083.1| hypothetical protein EGM_07863 [Macaca fascicularis]
Length = 1138
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 121/202 (59%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 505 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 564
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
I NE + + +++K A + +LFDI+FL LC + Q YGS+V+ SE+ G D FFE
Sbjct: 565 INLNEFTTYGS-EESTKPASVRALLFDISFLTLCHVAQTYGSEVILSESRTGADVPFFET 623
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 624 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMKLV-QMKWHEACLSISAAI 681
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 682 LEILNAWENGVLAFESIQKITD 703
>gi|8699628|gb|AAF78764.1|AF277379_1 vitamin D receptor-interacting protein complex component DRIP100
[Homo sapiens]
Length = 989
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 121/202 (59%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 409 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 468
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ G + FFE
Sbjct: 469 INLNEFTTYGS-EESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAEVPFFET 527
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V L+ N+S +E K ++ +E CL+I A I
Sbjct: 528 WMQTCMPEEGKILNPDHPCFRPDSTKVGSLVALLNNS-SEMK-LVQMKWHEACLSISAAI 585
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 586 LEILNAWENGVLAFESIQKITD 607
>gi|390463639|ref|XP_003733073.1| PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II
transcription subunit 24-like [Callithrix jacchus]
Length = 1008
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 121/202 (59%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 428 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 487
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ + FFE
Sbjct: 488 INLNEFTTYGS-EESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRSGAEVPFFET 546
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ + V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 547 WMQTCMPEEGKILNPDHPCFRPNSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISATI 604
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 605 LEILNAWENGVLAFESIQKITD 626
>gi|194374997|dbj|BAG62611.1| unnamed protein product [Homo sapiens]
Length = 821
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 121/202 (59%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 359 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 418
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ G + FFE
Sbjct: 419 INLNEFTTYGS-EESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAEVPFFET 477
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 478 WMQTCMPEEGKILNPDHPCFRPGSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 535
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 536 LEILNAWENGVLAFESIQKITD 557
>gi|350590349|ref|XP_003483038.1| PREDICTED: mediator of RNA polymerase II transcription subunit
24-like [Sus scrofa]
gi|350590353|ref|XP_003483039.1| PREDICTED: mediator of RNA polymerase II transcription subunit
24-like isoform 1 [Sus scrofa]
Length = 989
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 119/202 (58%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 409 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 468
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ S++ + FFE
Sbjct: 469 INLNEFTTHGS-EESTKAASVRALLFDISFLMLCHVAQTYGSEVILSDSSTGAEVFFFET 527
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+ +E K ++ E CL+I A I
Sbjct: 528 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNF-SEMK-LVQMKWNEACLSISAAI 585
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 586 LEILNAWENGVLAFESIQKITD 607
>gi|350590351|ref|XP_003131538.3| PREDICTED: mediator of RNA polymerase II transcription subunit
24-like isoform 2 [Sus scrofa]
gi|350590355|ref|XP_003483040.1| PREDICTED: mediator of RNA polymerase II transcription subunit
24-like isoform 2 [Sus scrofa]
Length = 976
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 119/202 (58%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 396 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 455
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ S++ + FFE
Sbjct: 456 INLNEFTTHGS-EESTKAASVRALLFDISFLMLCHVAQTYGSEVILSDSSTGAEVFFFET 514
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+ +E K ++ E CL+I A I
Sbjct: 515 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNF-SEMK-LVQMKWNEACLSISAAI 572
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 573 LEILNAWENGVLAFESIQKITD 594
>gi|312382152|gb|EFR27706.1| hypothetical protein AND_05260 [Anopheles darlingi]
Length = 503
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 86/125 (68%), Gaps = 1/125 (0%)
Query: 6 EPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFNE 65
E LA +L+ L T+FSK+QDALL +L QVL G DL+L+VA+VEGK V+ L+K N+
Sbjct: 371 ESPLAGILKALSTDFSKVQDALLTMLCQVLTGNGLDLVLSVASVEGKFKALVSGLLKCND 430
Query: 66 CSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMVE 125
C+KQ+ + K T+ LFD++F+ML + Q YGS + +E GG++FFEKWVR+ MVE
Sbjct: 431 CAKQATTVELGKAPATRAALFDVSFMMLAFVAQSYGSDAILAE-GGNTFFEKWVREFMVE 489
Query: 126 GGRPK 130
+ K
Sbjct: 490 RKKTK 494
>gi|449491127|ref|XP_004174720.1| PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II
transcription subunit 24 [Taeniopygia guttata]
Length = 956
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 120/212 (56%), Gaps = 16/212 (7%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 384 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 443
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVF---SENG------- 110
+K NE +KQ + SK+ + +LFDI+FLMLC + Q YGS+V E G
Sbjct: 444 VKLNEFTKQIT-GEISKSGPVRALLFDISFLMLCHVAQTYGSEVRILGEDEKGDPVGFQP 502
Query: 111 ---GDSFFEKWVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCY 167
G FFE W+ CM E G+ D V+ L+ N+S +E K ++ +
Sbjct: 503 SRXGCPFFEIWMVTCMPEEGKILNPDHSCFRPDSTKVESLVALLNNS-SEMKLV-QMKWH 560
Query: 168 EICLNIPAVIYDVLGAWETSVLSSTDVKRILD 199
E+CL+I A I ++L AWE VL+ +++I D
Sbjct: 561 EVCLSISAAILEILNAWENGVLTFESIQKITD 592
>gi|194383492|dbj|BAG64717.1| unnamed protein product [Homo sapiens]
Length = 899
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 121/202 (59%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 319 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 378
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ G + FFE
Sbjct: 379 INLNEFTTYGS-EESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAEVPFFET 437
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 438 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMKLV-QMKWHEACLSISAAI 495
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L A E VL+ +++I D
Sbjct: 496 LEILNAGENGVLAFESIQKITD 517
>gi|405967206|gb|EKC32400.1| Mediator of RNA polymerase II transcription subunit 24 [Crassostrea
gigas]
Length = 963
Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 116/203 (57%), Gaps = 7/203 (3%)
Query: 2 IICAEPTLARVLRTLD-TEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
II E L ++++TLD + SK ++++L + +G++ D ILAVA+ GKL +KL
Sbjct: 375 IIRNEQQLPKIIKTLDNADASKTPSDMMSLLCLLTSGRNLDFILAVASSTGKLLGLASKL 434
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVF-SENGGDSFFEKWV 119
+K NE +KQ+ + K AQT++MLFDI+FLMLC I Q YG +++ S DSFF W
Sbjct: 435 VKINEFAKQTQ-GEMGKMAQTRIMLFDISFLMLCHISQVYGLEIIAPSPEYSDSFFAHWA 493
Query: 120 RDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSS-DAEFKNCPKLNCYEICLNIPAVIY 178
C+ E G+ K DQ VD L++ S D N ++N E CLN P +
Sbjct: 494 TRCLPEDGKYKCIDN-FTPTDQGKVDLLIQHLISGVDVNKLNITRMN--EYCLNFPLALQ 550
Query: 179 DVLGAWETSVLSSTDVKRILDAM 201
++L AWE +S+ +K I++ +
Sbjct: 551 EILIAWEHGAVSADSIKMIMEHI 573
>gi|355568629|gb|EHH24910.1| hypothetical protein EGK_08648 [Macaca mulatta]
Length = 990
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 119/202 (58%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+ KS DL+LA AA KL +F K
Sbjct: 410 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSEKSLDLLLAAAAATEKLKSFARKF 469
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
I NE + + +++K A + +LFDI+FL LC + Q YGS+V+ SE+ G D FFE
Sbjct: 470 INLNEFTTYGS-EESTKPASVRALLFDISFLTLCHVAQTYGSEVILSESRTGADVPFFET 528
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 529 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 586
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 587 LEILNAWENGVLAFESIQKITD 608
>gi|444714012|gb|ELW54900.1| Mediator of RNA polymerase II transcription subunit 24 [Tupaia
chinensis]
Length = 957
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 116/202 (57%), Gaps = 12/202 (5%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 383 LILRAEPT------TMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLRSFARKF 436
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
I NE + + +T K A + +LFDI+FLMLC + Q YGS+V+ SE+ + FFE
Sbjct: 437 INLNEFTTHGSEENT-KPASVRALLFDISFLMLCHVAQTYGSEVILSESNTGAEVPFFET 495
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 496 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMKLV-QMKWHEACLSISAAI 553
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 554 LEILNAWENGVLAFESIQKITD 575
>gi|194373467|dbj|BAG56829.1| unnamed protein product [Homo sapiens]
Length = 638
Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 122/214 (57%), Gaps = 18/214 (8%)
Query: 1 VIICAEPTLARVLR------------TLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAA 48
+I+ AEPT+ +L+ T+D + SK + LL VL +L+GKS DL+LA AA
Sbjct: 338 LILRAEPTVTNILKCSSGLDFLSCPQTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAA 397
Query: 49 VEGKLCTFVTKLIKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSE 108
GKL +F K I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE
Sbjct: 398 ATGKLKSFARKFINLNEFTTYGS-EESTKPASVRALLFDISFLMLCHVAQTYGSEVILSE 456
Query: 109 N--GGD-SFFEKWVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLN 165
+ G + FFE W++ CM E G+ D V+ L+ N+S +E K ++
Sbjct: 457 SRTGAEVPFFETWMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMK 514
Query: 166 CYEICLNIPAVIYDVLGAWETSVLSSTDVKRILD 199
+E CL+I A I ++L AWE VL+ +++I D
Sbjct: 515 WHEACLSISAAILEILNAWENGVLAFESIQKITD 548
>gi|441661013|ref|XP_003278357.2| PREDICTED: mediator of RNA polymerase II transcription subunit 24
[Nomascus leucogenys]
Length = 1010
Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 112/189 (59%), Gaps = 6/189 (3%)
Query: 14 RTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFNECSKQSNPS 73
+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K I NE + +
Sbjct: 443 QTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFINLNEFTTYGS-E 501
Query: 74 DTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEKWVRDCMVEGGRPK 130
+++K A + +LFDI+FLMLC + Q YGS+V+ SE+ G + FFE W++ CM E G+
Sbjct: 502 ESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAEVPFFETWMQTCMPEEGKIL 561
Query: 131 PYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLGAWETSVLS 190
D V+ L+ N+S +E K ++ +E CL+I A I ++L AWE VL+
Sbjct: 562 NPDHPCFRPDSTKVESLVALLNNS-SEMKLV-QMKWHEACLSISAAILEILNAWENGVLA 619
Query: 191 STDVKRILD 199
+++I D
Sbjct: 620 FESIQKITD 628
>gi|30525531|gb|AAP32706.1| thyroid hormone receptor-associated protein TRAP100 [Drosophila
simulans]
Length = 504
Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/115 (53%), Positives = 77/115 (66%), Gaps = 1/115 (0%)
Query: 85 LFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMVEGGRPKPYKKMLDEKDQAGV 144
LFD++FLML SIVQ YGS VV SE G DSFFEKWVR+CMVE + K +++L D + V
Sbjct: 6 LFDVSFLMLTSIVQTYGSDVVLSERG-DSFFEKWVRECMVERNKLKNPRQILALCDDSIV 64
Query: 145 DDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLGAWETSVLSSTDVKRILD 199
D+LL F+ +A L+ E CLN+P V++ VL AWE LSS DVK ILD
Sbjct: 65 DELLLSFSKPEAAQLKANNLSWQETCLNLPGVLHHVLIAWEQETLSSADVKSILD 119
>gi|194382730|dbj|BAG64535.1| unnamed protein product [Homo sapiens]
Length = 566
Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 110/187 (58%), Gaps = 6/187 (3%)
Query: 16 LDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFNECSKQSNPSDT 75
+D + SK + LL VL +L+GKS DL+LA AA GKL +F K I NE + + ++
Sbjct: 1 MDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFINLNEFTTYGS-EES 59
Query: 76 SKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEKWVRDCMVEGGRPKPY 132
+K A + +LFDI+FLMLC + Q YGS+V+ SE+ G + FFE W++ CM E G+
Sbjct: 60 TKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAEVPFFETWMQTCMPEEGKILNP 119
Query: 133 KKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLGAWETSVLSST 192
D V+ L+ N+S +E K ++ +E CL+I A I ++L AWE VL+
Sbjct: 120 DHPCFRPDSTKVESLVALLNNS-SEMKLV-QMKWHEACLSISAAILEILNAWENGVLAFE 177
Query: 193 DVKRILD 199
+++I D
Sbjct: 178 SIQKITD 184
>gi|30525513|gb|AAP32707.1| thyroid hormone receptor-associated protein TRAP100 [Drosophila
pseudoobscura]
gi|30525517|gb|AAP32709.1| thyroid hormone receptor-associated protein TRAP100 [Drosophila
pseudoobscura]
gi|30525519|gb|AAP32710.1| thyroid hormone receptor-associated protein TRAP100 [Drosophila
pseudoobscura]
Length = 504
Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/120 (52%), Positives = 81/120 (67%), Gaps = 3/120 (2%)
Query: 81 TKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMVEGGRPKPYKKMLDEKD 140
T+ LFD++FLML SIVQ YGS VV S+ G DSFFEKWVR+CMVE + K +++L D
Sbjct: 2 TRSTLFDVSFLMLTSIVQTYGSDVVLSDRG-DSFFEKWVRECMVERNKLKNPRQILALCD 60
Query: 141 QAGVDDLLRQFNSSD-AEFKNCPKLNCYEICLNIPAVIYDVLGAWETSVLSSTDVKRILD 199
+ VD+LL + + A+ K C L+ E CLN+P V++ VL AWE LSS DVK ILD
Sbjct: 61 DSMVDELLLSLSKPEAAQLKPC-SLSWQETCLNLPGVLHHVLIAWEQETLSSADVKNILD 119
>gi|30525515|gb|AAP32708.1| thyroid hormone receptor-associated protein TRAP100 [Drosophila
pseudoobscura]
Length = 504
Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/120 (52%), Positives = 81/120 (67%), Gaps = 3/120 (2%)
Query: 81 TKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMVEGGRPKPYKKMLDEKD 140
T+ LFD++FLML SIVQ YGS VV S+ G DSFFEKWVR+CMVE + K +++L D
Sbjct: 2 TRSTLFDVSFLMLTSIVQTYGSDVVLSDRG-DSFFEKWVRECMVERNKLKNPRQILALCD 60
Query: 141 QAGVDDLLRQFNSSD-AEFKNCPKLNCYEICLNIPAVIYDVLGAWETSVLSSTDVKRILD 199
+ VD+LL + + A+ K C L+ E CLN+P V++ VL AWE LSS DVK ILD
Sbjct: 61 DSMVDELLLSLSKPEAAQLKPC-SLSWQETCLNLPGVLHHVLIAWEQETLSSADVKNILD 119
>gi|30525525|gb|AAP32703.1| thyroid hormone receptor-associated protein TRAP100 [Drosophila
yakuba]
Length = 504
Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 77/115 (66%), Gaps = 1/115 (0%)
Query: 85 LFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMVEGGRPKPYKKMLDEKDQAGV 144
LFD++FLML SIVQ YGS VV SE G DSFFEKWVR+CMVE + K +++L + + V
Sbjct: 6 LFDVSFLMLTSIVQTYGSDVVLSERG-DSFFEKWVRECMVERNKLKNPRQILALCEDSIV 64
Query: 145 DDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLGAWETSVLSSTDVKRILD 199
D+LL F+ +A L+ E CLN+P V++ VL AWE LSS DVK ILD
Sbjct: 65 DELLLSFSKPEAAQLKPNNLSWQETCLNLPGVLHHVLIAWEQETLSSADVKSILD 119
>gi|30525527|gb|AAP32704.1| thyroid hormone receptor-associated protein TRAP100 [Drosophila
subobscura]
Length = 188
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/120 (52%), Positives = 81/120 (67%), Gaps = 3/120 (2%)
Query: 81 TKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMVEGGRPKPYKKMLDEKD 140
T+ LFD++FLML SIVQ YGS VV S+ G DSFFEKWVR+CMVE + K +++L D
Sbjct: 2 TRSTLFDVSFLMLTSIVQTYGSDVVLSDRG-DSFFEKWVRECMVERNKLKNPRQILALCD 60
Query: 141 QAGVDDLLRQFNSSD-AEFKNCPKLNCYEICLNIPAVIYDVLGAWETSVLSSTDVKRILD 199
+ VD+LL + + A+ K C L+ E CLN+P V++ VL AWE LSS DVK ILD
Sbjct: 61 DSMVDELLLSLSKPEAAQLKPC-TLSWQETCLNLPGVLHHVLIAWEQETLSSADVKSILD 119
>gi|30525529|gb|AAP32705.1| thyroid hormone receptor-associated protein TRAP100 [Drosophila
mojavensis]
Length = 188
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 77/121 (63%), Gaps = 1/121 (0%)
Query: 81 TKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMVEGGRPKPYKKMLDEKD 140
T+ LFD++FLML SIVQ YGS VV SE DSFFEKWVR CM+E + K +++L +
Sbjct: 2 TRSTLFDVSFLMLTSIVQTYGSDVVLSERC-DSFFEKWVRTCMMERNKLKNPRQILALCE 60
Query: 141 QAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLGAWETSVLSSTDVKRILDA 200
+ VD+LL + +A L +ICLN+P V++ VL AWE LSS DVK ILD
Sbjct: 61 DSIVDELLLSLSKPEAAQLKPSNLTWQDICLNLPGVLHHVLIAWEQETLSSADVKSILDN 120
Query: 201 M 201
M
Sbjct: 121 M 121
>gi|296238871|ref|XP_002764344.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24,
partial [Callithrix jacchus]
Length = 428
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 73/126 (57%), Gaps = 5/126 (3%)
Query: 77 KTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEKWVRDCMVEGGRPKPYK 133
+TA + +LFDI+FLMLC + Q YGS+V+ SE+ + FFE W++ CM E G+
Sbjct: 1 QTASVRALLFDISFLMLCHVAQTYGSEVILSESRSGAEVPFFETWMQTCMPEEGKILNPD 60
Query: 134 KMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLGAWETSVLSSTD 193
D V+ L+ N+S +E K ++ +E CL+I A I ++L AWE VL+
Sbjct: 61 HPCFRPDSTKVESLVALLNNS-SEMKLV-QMKWHEACLSISAAILEILNAWENGVLAFES 118
Query: 194 VKRILD 199
+++I D
Sbjct: 119 IQKITD 124
>gi|195167562|ref|XP_002024602.1| Trap100 [Drosophila persimilis]
gi|194108007|gb|EDW30050.1| Trap100 [Drosophila persimilis]
Length = 815
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 63/97 (64%), Gaps = 3/97 (3%)
Query: 104 VVFSENGGDSFFEKWVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSD-AEFKNCP 162
VV S+ G DSFFEKWVR+CMVE + K +++L D + VD+LL + + A+ K C
Sbjct: 446 VVLSDRG-DSFFEKWVRECMVERNKLKNPRQILALCDDSMVDELLLSLSKPEAAQLKPC- 503
Query: 163 KLNCYEICLNIPAVIYDVLGAWETSVLSSTDVKRILD 199
L+ E CLN+P V++ VL AWE LSS DVK ILD
Sbjct: 504 SLSWQETCLNLPGVLHHVLIAWEQETLSSADVKNILD 540
>gi|198430075|ref|XP_002122185.1| PREDICTED: similar to mediator complex subunit 24 [Ciona
intestinalis]
Length = 966
Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 112/207 (54%), Gaps = 22/207 (10%)
Query: 1 VIICAEPTLARVLRTLD-TEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTK 59
+I+ AE + ++++ L T+FS+ + LLN + +++ +SF ++A A G+L F
Sbjct: 417 IILKAENNIDQLVKLLSSTDFSE-PERLLNTFAGMMSIRSFSALIAAATTTGQLPAFANA 475
Query: 60 LIKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRY------GSKVVFSENGGD- 112
LI N+ K S P++TSK AQ + +LFDITFLM+C +++ Y GS +V S+
Sbjct: 476 LIDCNDAMK-SCPAETSKNAQIRAVLFDITFLMVCYMIKLYGKETTVGSYIVRSKEETPI 534
Query: 113 --SFFEKWVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFK-NCPKLNCYEI 169
+ W D + + K E + V++L+ SS EFK + K N +I
Sbjct: 535 LLQWINIWWTDKITQISTLK------SEPEPNRVENLIPVLRSSQ-EFKLSMTKWN--DI 585
Query: 170 CLNIPAVIYDVLGAWETSVLSSTDVKR 196
C+N+P + ++L A + ++S T+V R
Sbjct: 586 CMNLPQSMIELLTARQKGIISITEVVR 612
>gi|196009422|ref|XP_002114576.1| hypothetical protein TRIADDRAFT_58552 [Trichoplax adhaerens]
gi|190582638|gb|EDV22710.1| hypothetical protein TRIADDRAFT_58552 [Trichoplax adhaerens]
Length = 1005
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 34/185 (18%)
Query: 39 SFDLILAVAAVEGKLCTFVTKLIKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQ 98
D++LA AA G + LI+ N+ K+ TS+ + LFD+TF++LCS++Q
Sbjct: 432 HMDVVLATAACSGCMKNLALALIRLNDSIKR----QTSRGDH--LQLFDVTFILLCSVIQ 485
Query: 99 RYGSKVVFSENGG--DSFFEKWVRDCMVEGGRPKPYKKMLDEKDQAG------------- 143
RYG +++ +N +SFF +W + E P++ + ++
Sbjct: 486 RYGKQILTDDNQSTVNSFFYQWANQYLHE---EYPFESQAQQVPKSASISVPCTPTQSIL 542
Query: 144 ------VDDLLRQFNSS-DAEFKNCPKLNCYEICLNIPAVIYDVLGAWETSVLSSTDVKR 196
VD +L F S D EF N Y++C+ + +++ W + +S + VK+
Sbjct: 543 TMATDTVDSMLSVFTKSYDTEFDYS---NLYQMCMMASGFVKEIIKPWHLNFISESTVKQ 599
Query: 197 ILDAM 201
LD +
Sbjct: 600 YLDRL 604
>gi|344235342|gb|EGV91445.1| Mediator of RNA polymerase II transcription subunit 24 [Cricetulus
griseus]
Length = 203
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 62/111 (55%), Gaps = 5/111 (4%)
Query: 92 MLCSIVQRYGSKVVFSE-NGGDS--FFEKWVRDCMVEGGRPKPYKKMLDEKDQAGVDDLL 148
MLC + Q YGS+V+ SE + G+ FFE W++ CM E G+ D V+ L+
Sbjct: 1 MLCHVAQTYGSEVILSEASSGEEVPFFETWMQTCMPEEGKILNPDHPCFRPDSTKVESLV 60
Query: 149 RQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLGAWETSVLSSTDVKRILD 199
N+S +E K ++ +E CL+I A I ++L AWE VL+ +++I D
Sbjct: 61 ALLNNS-SEMK-LVQMKWHEACLSISAAILEILNAWENGVLAFESIQKITD 109
>gi|395532576|ref|XP_003768346.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24
[Sarcophilus harrisii]
Length = 850
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 49/75 (65%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 404 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 463
Query: 61 IKFNECSKQSNPSDT 75
I NE +K N ++
Sbjct: 464 ISLNEFTKHINGENS 478
>gi|182627803|gb|ACB88921.1| mediator complex subunit MED24 variant MED24_i8 [Homo sapiens]
Length = 196
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 28 LNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFNECSKQSNPSDTSKTAQTKVMLFD 87
L L + L+ +L +A GKL +F K I NE + + +++K A + +LFD
Sbjct: 117 LQRLEKTLSSTKNRALLHIAT--GKLKSFARKFINLNEFTTYGS-EESTKPASVRALLFD 173
Query: 88 ITFLMLCSIVQRYGSKVVFSEN 109
I+FLMLC + Q YGS+V+ SE+
Sbjct: 174 ISFLMLCHVAQTYGSEVILSES 195
>gi|339246779|ref|XP_003375023.1| mediator of RNA polymerase II transcription subunit 24 [Trichinella
spiralis]
gi|316971663|gb|EFV55409.1| mediator of RNA polymerase II transcription subunit 24 [Trichinella
spiralis]
Length = 326
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+++ AE TL +++ D + + +L+ +++GKS I A A +L +L
Sbjct: 124 LVLRAEFTLQSIVKAFDAH--QALERWPQMLNTMMSGKSLLYICAAAISIDQLNLLAERL 181
Query: 61 IKFNECSKQSNP--SDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKW 118
IK E K+ P D K+ LFD++FL+L + Q Y + GD FF+ W
Sbjct: 182 IKITETYKEVVPVGEDAQKSVPPSHDLFDMSFLLLHRLSQYYSTTTCL--RPGDPFFKTW 239
Query: 119 VRDCMVEGGRPKPYKKMLDEKD 140
++ R M D +D
Sbjct: 240 YFSSAIDLVR-----NMFDPED 256
>gi|339246769|ref|XP_003375018.1| hypothetical protein Tsp_04202 [Trichinella spiralis]
gi|316971722|gb|EFV55466.1| hypothetical protein Tsp_04202 [Trichinella spiralis]
Length = 987
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 14/209 (6%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+++ AE TL +++ D + + +L+ +++GKS I A A +L +L
Sbjct: 357 LVLRAEFTLQSIVKAFDAH--QALERWPQMLNTMMSGKSLLYICAAAISIDQLNLLAERL 414
Query: 61 IKFNECSKQSNP--SDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKW 118
IK E K+ P D K+ LFD++FL+L + Q Y + GD FF+ W
Sbjct: 415 IKITETYKEVVPVGEDAQKSVPPSHDLFDMSFLLLHRLSQYYSTTTCL--RPGDPFFKTW 472
Query: 119 VRDCMVEGGR----PKPYKKMLDE--KDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLN 172
++ R P+ ++L D D+L + + N C I
Sbjct: 473 YFSSAIDLVRNMFDPEDLPQLLKNVPMDLELASDVLSRLRVGQPGWLNIRTWYC--IIDL 530
Query: 173 IPAVIYDVLGAWETSVLSSTDVKRILDAM 201
IP+++ VL +S ++K I +
Sbjct: 531 IPSIVQVVLNEVLLDTISIEELKHIFSGL 559
>gi|312382151|gb|EFR27705.1| hypothetical protein AND_05259 [Anopheles darlingi]
Length = 789
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 144 VDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLGAWETSVLSSTDVKRILDAM 201
+++L+ N++DA K L +IC IPA+++ VL AWE LS ++K++LD +
Sbjct: 3 LEELIMALNNTDAGLKTS-NLRWEDICYTIPALLHQVLMAWENETLSPVEIKKMLDGL 59
>gi|343959112|dbj|BAK63411.1| thyroid hormone receptor-associated protein complex 100 kDa
component [Pan troglodytes]
Length = 461
Score = 39.3 bits (90), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 119 VRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIY 178
++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 1 MQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMKLV-QMKWHEACLSISAAIL 58
Query: 179 DVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 59 EILNAWENGVLAFESIQKITD 79
>gi|254411156|ref|ZP_05024934.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196182511|gb|EDX77497.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 568
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 25/169 (14%)
Query: 16 LDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFNECSKQSNPSDT 75
L E K+++ LLN+L Q + + +A + L+KF + + Q +P
Sbjct: 350 LKREKQKVENLLLNILPQPIAKQLQHEPGLIAQKHEDVTILFADLVKFTQLAGQISP--- 406
Query: 76 SKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMVEGGRPKPYKKM 135
Q V L ++ + Q++G + + + GD++ MV GG P P
Sbjct: 407 ----QELVSLLNMIVSTFDRLAQKHGLEKI--KTIGDAY--------MVVGGLPTPQSNH 452
Query: 136 LDEKDQAGVD--DLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLG 182
+D Q G+D L Q N+S KN I +N VI V+G
Sbjct: 453 VDAIAQMGLDMQQSLEQINTSTG--KNF----RLRIGINTGVVIAGVIG 495
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,991,694,137
Number of Sequences: 23463169
Number of extensions: 115281364
Number of successful extensions: 237377
Number of sequences better than 100.0: 147
Number of HSP's better than 100.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 236873
Number of HSP's gapped (non-prelim): 151
length of query: 201
length of database: 8,064,228,071
effective HSP length: 135
effective length of query: 66
effective length of database: 9,191,667,552
effective search space: 606650058432
effective search space used: 606650058432
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 73 (32.7 bits)