BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13866
         (201 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1QB4|A Chain A, Crystal Structure Of Mn(2+)-Bound Phosphoenolpyruvate
           Carboxylase
 pdb|1JQN|A Chain A, Crystal Structure Of E.Coli Phosphoenolpyruvate
           Carboxylase In Complex With Mn2+ And Dcdp
 pdb|1FIY|A Chain A, Three-Dimensional Structure Of Phosphoenolpyruvate
           Carboxylase From Escherichia Coli At 2.8 A Resolution
          Length = 883

 Score = 30.4 bits (67), Expect = 0.72,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 9   LARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFNECSK 68
           +AR LR L  +    +D +     + +   S +L+L     E    T + K+++ N C K
Sbjct: 104 IARTLRKLKNQPELSEDTI----KKAVESLSLELVLTAHPTEITRRTLIHKMVEVNACLK 159

Query: 69  QSNPSDTSKTAQTKVM 84
           Q +  D +     ++M
Sbjct: 160 QLDNKDIADYEHNQLM 175


>pdb|2OPD|A Chain A, Structure Of The Neisseria Meningitidis Minor Type Iv
           Pilin, Pilx
 pdb|2OPD|B Chain B, Structure Of The Neisseria Meningitidis Minor Type Iv
           Pilin, Pilx
 pdb|2OPE|A Chain A, Crystal Structure Of The Neisseria Meningitidis Minor Type
           Iv Pilin, Pilx, In Space Group P43
 pdb|2OPE|B Chain B, Crystal Structure Of The Neisseria Meningitidis Minor Type
           Iv Pilin, Pilx, In Space Group P43
 pdb|2OPE|C Chain C, Crystal Structure Of The Neisseria Meningitidis Minor Type
           Iv Pilin, Pilx, In Space Group P43
 pdb|2OPE|D Chain D, Crystal Structure Of The Neisseria Meningitidis Minor Type
           Iv Pilin, Pilx, In Space Group P43
          Length = 128

 Score = 28.1 bits (61), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 50  EGKLCTFVTKLIKFNECSKQ---SNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVF 106
           +G      T+++  N  SKQ    NP D ++T ++K+  F   + M   I ++Y   V F
Sbjct: 6   KGYQSQLYTEMVGINNISKQFILKNPLDDNQTIKSKLERFVSGYKMNPKIAEKYNVSVHF 65


>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
 pdb|2BKU|B Chain B, Kap95p:rangtp Complex
 pdb|2BKU|D Chain D, Kap95p:rangtp Complex
 pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
           The Gtp- Bound Conformation: Implications For Nuclear
           Import Complex Assembly Dynamics
 pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
           The Gtp- Bound Conformation: Implications For Nuclear
           Import Complex Assembly Dynamics
          Length = 861

 Score = 26.9 bits (58), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 1   VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSF--DLILAVAAVEGKLCT 55
           V I A   +A +  +L+ +F +  DA++NVL+Q+++  +   +L  AV +V G + +
Sbjct: 655 VSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIAS 711


>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
          Length = 861

 Score = 26.9 bits (58), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 1   VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSF--DLILAVAAVEGKLCT 55
           V I A   +A +  +L+ +F +  DA++NVL+Q+++  +   +L  AV +V G + +
Sbjct: 655 VSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIAS 711


>pdb|1B0N|A Chain A, Sinr ProteinSINI PROTEIN COMPLEX
          Length = 111

 Score = 26.6 bits (57), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 112 DSFFEKWVRDCMVEGGRPKPYKKMLD 137
           DS +EK VRD M  G   K +++ LD
Sbjct: 75  DSEWEKLVRDAMTSGVSKKQFREFLD 100


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,729,423
Number of Sequences: 62578
Number of extensions: 226630
Number of successful extensions: 500
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 495
Number of HSP's gapped (non-prelim): 7
length of query: 201
length of database: 14,973,337
effective HSP length: 94
effective length of query: 107
effective length of database: 9,091,005
effective search space: 972737535
effective search space used: 972737535
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)