BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13866
(201 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q16X15|MED24_AEDAE Mediator of RNA polymerase II transcription subunit 24 OS=Aedes
aegypti GN=MED24 PE=3 SV=1
Length = 1005
Score = 185 bits (470), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 134/200 (67%), Gaps = 4/200 (2%)
Query: 2 IICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLI 61
++ AEP L +L+TL ++++K+Q+ALL +L QVL+G SF+LIL+VA VEGKL TFV LI
Sbjct: 431 VLRAEPPLVGILKTLSSDYNKVQEALLGMLCQVLSGNSFELILSVATVEGKLKTFVAGLI 490
Query: 62 KFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRD 121
K NE SKQ P + K A T+ LFD++FLML IVQ YGS+ V + +G DSFFEKWVR+
Sbjct: 491 KCNENSKQV-PGEMGKPAMTRAALFDVSFLMLVFIVQNYGSEGVLT-DGTDSFFEKWVRE 548
Query: 122 CMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVL 181
CMVE + K M+ DQ VD+L+ NS D L EIC NIP ++Y VL
Sbjct: 549 CMVEKHKSKSPMNMVKLCDQNKVDELIVSLNSPDG--LKATSLKWQEICANIPGLLYQVL 606
Query: 182 GAWETSVLSSTDVKRILDAM 201
AWE LS+ ++K+ LD++
Sbjct: 607 LAWENETLSTGEIKKFLDSL 626
>sp|Q9VSF2|MED24_DROME Mediator of RNA polymerase II transcription subunit 24
OS=Drosophila melanogaster GN=MED24 PE=1 SV=2
Length = 993
Score = 169 bits (429), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 102/195 (52%), Positives = 130/195 (66%), Gaps = 5/195 (2%)
Query: 5 AEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFN 64
AE L+ VL+TL T +K+QD ++NVL QV G SF+LIL+VA VEG+L TFV++LI+ N
Sbjct: 419 AEVPLSGVLKTLCT--NKVQD-MVNVLCQVPVGNSFELILSVATVEGRLKTFVSRLIQCN 475
Query: 65 ECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMV 124
E SK P D K + LFD++FLML SIVQ YGS VV SE G DSFFEKWVR+CMV
Sbjct: 476 ENSKPV-PGDLGKLCVIRSTLFDVSFLMLTSIVQTYGSDVVLSERG-DSFFEKWVRECMV 533
Query: 125 EGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLGAW 184
E + K +++L D + VD+LL F+ +A L+ E CLN+P V++ VL AW
Sbjct: 534 ERNKLKNPRQILALCDDSIVDELLLSFSKPEASQLKPNNLSWQETCLNLPGVLHHVLIAW 593
Query: 185 ETSVLSSTDVKRILD 199
E LSS DVK ILD
Sbjct: 594 EQETLSSADVKSILD 608
>sp|Q7Q6D9|MED24_ANOGA Mediator of RNA polymerase II transcription subunit 24 OS=Anopheles
gambiae GN=MED24 PE=3 SV=4
Length = 1036
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/198 (41%), Positives = 129/198 (65%), Gaps = 3/198 (1%)
Query: 6 EPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFNE 65
E LA +L+ L T+ SK+QDALL +L QVL G S DL+L+VA+VEGK F++ L+K N+
Sbjct: 437 ESPLAGILKALSTDCSKVQDALLAMLCQVLTGNSLDLVLSVASVEGKFKAFISGLLKCND 496
Query: 66 CSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMVE 125
+KQ+ ++ K T+ LFD++F++L SI Q YGS V+ +E GG+SFFEKWVRD MVE
Sbjct: 497 YAKQATTAEIGKAPTTRSALFDVSFMILASIAQSYGSDVILAE-GGNSFFEKWVRDYMVE 555
Query: 126 GGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKN--CPKLNCYEICLNIPAVIYDVLGA 183
+ K M+ + D +++L+ N+S+ + L +IC IPA+++ VL A
Sbjct: 556 RKKTKSPMTMVKQADPMVLEELIMAMNNSEGMYVGLKASSLRWEDICYTIPALVHQVLMA 615
Query: 184 WETSVLSSTDVKRILDAM 201
WE+ ++ ++K++LD +
Sbjct: 616 WESESIAPLEIKKMLDGL 633
>sp|Q2PW47|MED24_DANRE Mediator of RNA polymerase II transcription subunit 24 OS=Danio
rerio GN=med24 PE=2 SV=2
Length = 989
Score = 143 bits (360), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 123/202 (60%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 408 LILRAEPTVTNILKTVDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 467
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
IK NE K + + SK+A + +LFDI+FLMLC +VQ YGS+V+ S+ S FFE
Sbjct: 468 IKLNEFPKHIS-GEGSKSASVRALLFDISFLMLCHVVQTYGSEVILSDPSPSSETPFFET 526
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ + V+ L+ NSS +E K ++ +EICL+ PA I
Sbjct: 527 WLQTCMPEEGKTLNPDHPCFRPESGKVESLVALLNSS-SEMKLV-QMKWHEICLSTPAAI 584
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
+VL AWE VLS V++I D
Sbjct: 585 LEVLNAWENGVLSVEAVQKITD 606
>sp|Q6PI53|MED24_XENLA Mediator of RNA polymerase II transcription subunit 24 OS=Xenopus
laevis GN=med24 PE=2 SV=1
Length = 988
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 124/203 (61%), Gaps = 7/203 (3%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 406 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 465
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
I+ NE ++ ++SK A + +LFDI+FLMLC + Q YGS+++ SE GG+ FFE
Sbjct: 466 IQLNEFTRHIG-VESSKAANVRALLFDISFLMLCHVAQTYGSEMILSEGCPGGEMPFFES 524
Query: 118 WVRDCMVEGGRP-KPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAV 176
W++ CM GR P D A V+ L+ N+S E K + +E+CL+IPA
Sbjct: 525 WMQTCMPGEGRVLNPDHPCFRHPDIAKVEALVALLNTS-TEMK-LAQTKWHEVCLSIPAA 582
Query: 177 IYDVLGAWETSVLSSTDVKRILD 199
I ++ AWE VLSS +++I D
Sbjct: 583 ILEIHNAWENGVLSSEAIQKITD 605
>sp|Q5F3M0|MED24_CHICK Mediator of RNA polymerase II transcription subunit 24 OS=Gallus
gallus GN=MED24 PE=2 SV=1
Length = 986
Score = 140 bits (352), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 125/202 (61%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 406 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFAWKF 465
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGD---SFFEK 117
IK NE +K + ++ SK+A + +LFDI+FLMLC + Q YGS+V+ SE+ FFE
Sbjct: 466 IKLNEFTKHIS-TENSKSAPVRALLFDISFLMLCHVAQTYGSEVILSESRPADEVPFFET 524
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W+ CM E G+ D V+ L+ N+S +E K ++N +E+CL+I A I
Sbjct: 525 WMLTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQINWHEVCLSISAAI 582
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE SVL+ +++I D
Sbjct: 583 LEILNAWENSVLTFESIQKITD 604
>sp|Q4V8B3|MED24_RAT Mediator of RNA polymerase II transcription subunit 24 OS=Rattus
norvegicus GN=Med24 PE=2 SV=1
Length = 987
Score = 135 bits (341), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 121/202 (59%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 407 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 466
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
I NE + + +++KTA + +LFDI+FLMLC + Q YGS+V+ SE+ FFE
Sbjct: 467 INLNEFTTHGS-GESTKTASVRALLFDISFLMLCHVAQTYGSEVILSESSSGEEVPFFET 525
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 526 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 583
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 584 LEILNAWENGVLAFESIQKITD 605
>sp|Q99K74|MED24_MOUSE Mediator of RNA polymerase II transcription subunit 24 OS=Mus
musculus GN=Med24 PE=1 SV=1
Length = 987
Score = 135 bits (341), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 121/202 (59%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 407 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 466
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
I NE + + +++KTA + +LFDI+FLMLC + Q YGS+V+ SE+ FFE
Sbjct: 467 INLNEFTTHGS-GESTKTASVRALLFDISFLMLCHVAQTYGSEVILSESSSGEEVPFFET 525
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 526 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 583
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 584 LEILNAWENGVLAFESIQKITD 605
>sp|O75448|MED24_HUMAN Mediator of RNA polymerase II transcription subunit 24 OS=Homo
sapiens GN=MED24 PE=1 SV=1
Length = 989
Score = 132 bits (331), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 122/202 (60%), Gaps = 6/202 (2%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 409 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 468
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
I NE + + +++K A + +LFDI+FLMLC + Q YGS+V+ SE+ G + FFE
Sbjct: 469 INLNEFTTYGS-EESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAEVPFFET 527
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 528 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 585
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 586 LEILNAWENGVLAFESIQKITD 607
>sp|Q2MHH3|KU70_ASPSO ATP-dependent DNA helicase II subunit 1 OS=Aspergillus sojae
GN=ku70 PE=3 SV=1
Length = 655
Score = 34.7 bits (78), Expect = 0.39, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 120 RDCMVEGGRPKPYKKMLDEKDQAGVDDLLR 149
R VE PKPYKK+ E D+ GV+D++R
Sbjct: 581 RTSEVEDAAPKPYKKVKVETDEQGVEDVVR 610
>sp|Q2MHH4|KU70_ASPOR ATP-dependent DNA helicase II subunit 1 OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=ku70 PE=3 SV=1
Length = 655
Score = 31.2 bits (69), Expect = 4.8, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 120 RDCMVEGGRPKPYKKMLDEKDQAGVDDLLR 149
R VE KPYKK+ E D+ GV+D++R
Sbjct: 581 RTSEVEDAAQKPYKKVKVETDEQGVEDVVR 610
>sp|Q7MA35|DNAK_WOLSU Chaperone protein DnaK OS=Wolinella succinogenes (strain ATCC 29543
/ DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W) GN=dnaK
PE=3 SV=1
Length = 631
Score = 31.2 bits (69), Expect = 5.0, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 103 KVVFSENGGDSFFEKWVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKN 160
K+ S DS EK V+D + K M++ K+QA D LL Q S EFK+
Sbjct: 494 KITGSSGLSDSEIEKMVKDAELHKEEDSKRKSMIEAKNQA--DSLLYQTEKSLGEFKD 549
>sp|A8GL86|CAPP_SERP5 Phosphoenolpyruvate carboxylase OS=Serratia proteamaculans (strain
568) GN=ppc PE=3 SV=1
Length = 878
Score = 30.4 bits (67), Expect = 7.7, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 20 FSKIQDALLNV--LSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFNECSKQSNPSDTSK 77
F++++D L+ L ++ S +L+L E T + KL++ N C Q + +D +
Sbjct: 108 FTRLKDKKLSTKELQNAVSQLSIELVLTAHPTEITRRTLIHKLVEVNTCLSQLDHNDLAD 167
Query: 78 TAQTKVM 84
+ K+M
Sbjct: 168 YERNKIM 174
>sp|Q7MH68|CAPP_VIBVY Phosphoenolpyruvate carboxylase OS=Vibrio vulnificus (strain YJ016)
GN=ppc PE=3 SV=2
Length = 877
Score = 30.4 bits (67), Expect = 7.9, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 16 LDTEFSKIQDALLNVL--SQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFNECSKQSNPS 73
++T F+K+ +N L +Q + + +L+L E T + KL+K NEC + S
Sbjct: 105 INTLFAKLGQNGINKLDTAQAIRELNIELVLTAHPTEITRRTMINKLVKINECLSKLELS 164
Query: 74 DTSKTAQTK 82
D S + K
Sbjct: 165 DLSYKERHK 173
>sp|Q8DCN2|CAPP_VIBVU Phosphoenolpyruvate carboxylase OS=Vibrio vulnificus (strain CMCP6)
GN=ppc PE=3 SV=1
Length = 877
Score = 30.4 bits (67), Expect = 7.9, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 16 LDTEFSKIQDALLNVL--SQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFNECSKQSNPS 73
++T F+K+ +N L +Q + + +L+L E T + KL+K NEC + S
Sbjct: 105 INTLFAKLGQNGINKLDTAQAIRELNIELVLTAHPTEITRRTMINKLVKINECLSKLELS 164
Query: 74 DTSKTAQTK 82
D S + K
Sbjct: 165 DLSYKERHK 173
>sp|B7VLL5|CAPP_VIBSL Phosphoenolpyruvate carboxylase OS=Vibrio splendidus (strain LGP32)
GN=ppc PE=3 SV=1
Length = 876
Score = 30.4 bits (67), Expect = 9.0, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 16 LDTEFSKIQDALLNVL--SQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFNECSKQSNPS 73
L + FSK+ ++ L +Q + + +L+L E T + KL+K NEC + S
Sbjct: 105 LQSLFSKLNQNDISKLDAAQAVRDLNIELVLTAHPTEITRRTMINKLVKINECLSKLELS 164
Query: 74 DTSKTAQTK 82
D S + K
Sbjct: 165 DLSHKERAK 173
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,009,094
Number of Sequences: 539616
Number of extensions: 2834282
Number of successful extensions: 5955
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 5916
Number of HSP's gapped (non-prelim): 21
length of query: 201
length of database: 191,569,459
effective HSP length: 112
effective length of query: 89
effective length of database: 131,132,467
effective search space: 11670789563
effective search space used: 11670789563
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)