Query psy13866
Match_columns 201
No_of_seqs 27 out of 29
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 22:25:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13866.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13866hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ung_C CMR2DHD; ferredoxin fol 55.8 5.9 0.0002 39.0 2.7 38 85-122 71-109 (693)
2 3a1y_A 50S ribosomal protein P 47.5 23 0.0008 24.0 3.9 43 5-47 15-57 (58)
3 1iie_A Protein (HLA-DR antigen 24.9 29 0.00098 25.4 1.4 13 114-126 47-59 (75)
4 2lbf_B 60S acidic ribosomal pr 24.0 63 0.0022 22.8 3.1 42 5-46 17-58 (70)
5 2odm_A YLAN, UPF0358 protein M 23.0 1.7E+02 0.0057 22.0 5.4 63 136-201 14-77 (91)
6 1pva_A Parvalbumin; calcium bi 20.6 1.9E+02 0.0065 19.0 6.1 15 186-200 56-70 (110)
7 3si5_X Protein CASC5; BUBR1-bl 19.6 12 0.00042 22.0 -1.2 20 51-70 1-20 (24)
8 2kfp_A Pspto_3016 protein; alp 19.5 44 0.0015 25.1 1.6 49 135-199 62-110 (125)
9 1z67_A Hypothetical protein S4 19.1 96 0.0033 24.5 3.5 76 94-179 27-106 (135)
10 2pvb_A Protein (parvalbumin); 18.8 2.1E+02 0.0072 18.8 6.1 55 139-200 6-69 (108)
No 1
>3ung_C CMR2DHD; ferredoxin fold, nucleotide-binding, polymerase, CMR complex function; HET: ADP; 2.31A {Pyrococcus furiosus} PDB: 3ur3_C 4doz_A
Probab=55.83 E-value=5.9 Score=39.05 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHHHHhhCcceEecCC-CCChhHHHHHHHH
Q psy13866 85 LFDITFLMLCSIVQRYGSKVVFSEN-GGDSFFEKWVRDC 122 (201)
Q Consensus 85 LFDiSFLmLc~IvQ~YGse~vl~~~-~gdsFFe~Wv~~c 122 (201)
|=-+++..+..+++.||-+++|.+. -++|||..|+.++
T Consensus 71 ls~l~w~~~~~~~~~~Gpd~il~P~lr~np~~~~~l~~~ 109 (693)
T 3ung_C 71 LSMLMYKALEVIVDKFGPEHVIYPSLRDQPFFLKFYLGE 109 (693)
T ss_dssp HHHHHHHHHHHHHHHTCGGGEEESCCTTCHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhCCCEEEccCcccCHHHHHHHHhc
Confidence 3344666777899999999999995 5899999999754
No 2
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=47.48 E-value=23 Score=23.96 Aligned_cols=43 Identities=19% Similarity=0.211 Sum_probs=33.0
Q ss_pred ccccHHHHHHhhccccccchHHHHHHHHhhhccchHHHHHHHH
Q psy13866 5 AEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVA 47 (201)
Q Consensus 5 AEptl~~IlKtl~aD~sK~qe~Ll~~L~~mlsGkSfdlilAaA 47 (201)
.+||-.+|-+-+.+=--++.+.+++.|..-|.||+.+=+++-|
T Consensus 15 ~~~t~~~I~~il~aaGveve~~~~~~~~~~L~gk~i~elI~~~ 57 (58)
T 3a1y_A 15 KEINEENLKAVLQAAGVEPEEARIKALVAALEGVNIDEVIEKA 57 (58)
T ss_dssp CCCCHHHHHHHHHHTTCCCCHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCccHHHHHHHHHHHCCCCHHHHHHcc
Confidence 3788777766666533466678999999999999998777654
No 3
>1iie_A Protein (HLA-DR antigens associated invariant chain); major histocompatibility complex, antigen processing, oligomerization, chaperonin; NMR {Homo sapiens} SCOP: a.109.1.1
Probab=24.86 E-value=29 Score=25.41 Aligned_cols=13 Identities=23% Similarity=0.680 Sum_probs=10.2
Q ss_pred hHHHHHHHHHhcC
Q psy13866 114 FFEKWVRDCMVEG 126 (201)
Q Consensus 114 FFe~Wv~~cm~e~ 126 (201)
=||.|++.|+.=+
T Consensus 47 ~FEsWM~~WLLFe 59 (75)
T 1iie_A 47 VFESWMHHWLLFE 59 (75)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3899999997543
No 4
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=24.04 E-value=63 Score=22.76 Aligned_cols=42 Identities=26% Similarity=0.365 Sum_probs=32.9
Q ss_pred ccccHHHHHHhhccccccchHHHHHHHHhhhccchHHHHHHH
Q psy13866 5 AEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAV 46 (201)
Q Consensus 5 AEptl~~IlKtl~aD~sK~qe~Ll~~L~~mlsGkSfdlilAa 46 (201)
++||-.+|-+-|.+=--++.+.+++.|..-|.||+.+=+++.
T Consensus 17 ~~~ta~~I~~il~aaGvevd~~~~~~~~~aL~gk~i~elIa~ 58 (70)
T 2lbf_B 17 SSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQ 58 (70)
T ss_dssp SSCCHHHHHHHHHTTTCCCCTTHHHHHHHHHSSCCHHHHHTT
T ss_pred CCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcCCCHHHHHHH
Confidence 578888877777754446667799999999999999877753
No 5
>2odm_A YLAN, UPF0358 protein MW0995; triple helix, unknown function; 2.24A {Staphylococcus aureus subsp}
Probab=22.99 E-value=1.7e+02 Score=22.03 Aligned_cols=63 Identities=17% Similarity=0.145 Sum_probs=45.5
Q ss_pred hhccChhhHHHHHHhhccCccccccCCCCchHHHhh-chHHHHHHHHHHhhcCCCChHHHHHHhhcC
Q psy13866 136 LDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICL-NIPAVIYDVLGAWETSVLSSTDVKRILDAM 201 (201)
Q Consensus 136 l~~~Dp~~Vd~Ll~~lns~~~efk~~~~~kW~eiC~-nip~ai~evL~AwE~g~lS~~~VkrilD~l 201 (201)
+-+-|-+++..||.+=.+.- -+.-||- ..|+-. -+=|.-+||=.|..-|.|+.++=|++++.|
T Consensus 14 lL~~DA~kI~~LI~vQ~~~L-~~~qCPl--yEEVlDTQmfGlSrEIdFAvrlGli~~~~Gk~ll~~L 77 (91)
T 2odm_A 14 QLTKDADEILHLIKVQLDNL-TLPSCPL--YEEVLDTQMFGLQKEVDFAVKLGLVDREDGKQIMLRL 77 (91)
T ss_dssp HHHHHHHHHHHHHHHHHSCC-----CCS--HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc-CccCCch--HHHHHHHHHhhhHHHHHHHHHHCCccHHHHHHHHHHH
Confidence 33468889999987654444 3444544 555554 477999999999999999999999998753
No 6
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=20.58 E-value=1.9e+02 Score=19.03 Aligned_cols=15 Identities=13% Similarity=0.408 Sum_probs=9.9
Q ss_pred cCCCChHHHHHHhhc
Q psy13866 186 TSVLSSTDVKRILDA 200 (201)
Q Consensus 186 ~g~lS~~~VkrilD~ 200 (201)
+|.|+.+|+++++..
T Consensus 56 ~G~I~~~el~~~l~~ 70 (110)
T 1pva_A 56 SGFIEEEELKFVLKS 70 (110)
T ss_dssp SSSBCHHHHHTGGGG
T ss_pred CCcCcHHHHHHHHHH
Confidence 567777777766643
No 7
>3si5_X Protein CASC5; BUBR1-blinkin complex, mitotic checkpoint, BUBR1, blinkin/KN chromosome segregation, cell cycle; 2.20A {Homo sapiens}
Probab=19.55 E-value=12 Score=21.99 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=15.0
Q ss_pred cchhHHHHHhcccccccccC
Q psy13866 51 GKLCTFVTKLIKFNECSKQS 70 (201)
Q Consensus 51 GkLk~Fa~kLIk~NE~~K~~ 70 (201)
|-|-+..++=|+||+|.|..
T Consensus 1 ~~~~~ssekKinfndFIKRL 20 (24)
T 3si5_X 1 GPLGSSSENKIDFNDFIKRL 20 (26)
T ss_pred CCCccchhhhccHHHHHHHH
Confidence 44566777889999998864
No 8
>2kfp_A Pspto_3016 protein; alpha, beta, double-WING, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas syringae} PDB: 3h9x_A
Probab=19.52 E-value=44 Score=25.12 Aligned_cols=49 Identities=12% Similarity=0.173 Sum_probs=34.6
Q ss_pred hhhccChhhHHHHHHhhccCccccccCCCCchHHHhhchHHHHHHHHHHhhcCCCChHHHHHHhh
Q psy13866 135 MLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLGAWETSVLSSTDVKRILD 199 (201)
Q Consensus 135 ~l~~~Dp~~Vd~Ll~~lns~~~efk~~~~~kW~eiC~nip~ai~evL~AwE~g~lS~~~VkrilD 199 (201)
+--.|||+..+.|..+ ..--|.+--. ...|.-|.+. |.++.++|++++|
T Consensus 62 vnlK~~Pe~~~~Lr~~-~~i~Payhmn-K~hWisv~Ld--------------~~v~d~~i~~lI~ 110 (125)
T 2kfp_A 62 IDLKVQPELVGSLRKK-PGIYPAYHMN-KEHWITVLLN--------------GPLGAKEIHSLIE 110 (125)
T ss_dssp EEEECCTTTHHHHHHS-TTEEECSSSC-SSSEEEEETT--------------TTCCHHHHHHHHH
T ss_pred EEEecCHHHHHHHHhC-CCCCccccCC-CCCeEEEEcC--------------CCCCHHHHHHHHH
Confidence 3456999999999986 3222555434 4679888765 6777888887776
No 9
>1z67_A Hypothetical protein S4005; structural genomics, shigella flexneri protein structure initiative, midwest center for structural genomics; 1.45A {Shigella flexneri 2A} SCOP: a.259.1.1
Probab=19.08 E-value=96 Score=24.47 Aligned_cols=76 Identities=12% Similarity=0.259 Sum_probs=49.9
Q ss_pred HHHHHhhCcceEecC---CCCChhHHHHHHHHHhc-CCCCCChhhhhhccChhhHHHHHHhhccCccccccCCCCchHHH
Q psy13866 94 CSIVQRYGSKVVFSE---NGGDSFFEKWVRDCMVE-GGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEI 169 (201)
Q Consensus 94 c~IvQ~YGse~vl~~---~~gdsFFe~Wv~~cm~e-~~~~ksP~~~l~~~Dp~~Vd~Ll~~lns~~~efk~~~~~kW~ei 169 (201)
-+|-+..|-..++.- +|=..-...|+.+ . .+.|.+|+++-.-..++.++.+-+++--+..+.. ..+
T Consensus 27 ~~v~~~GGL~gll~kfq~~GLg~~v~SWvg~---G~~N~pIs~~ql~~~lG~~~l~~lA~q~Gl~~~~~~-------~~L 96 (135)
T 1z67_A 27 SWVEEQGGIQVLLEKLQSGGLGAILSTWLSN---QQRNQSVSGEQLESALGTNAVSDLGQKLGVDTSTAS-------SLL 96 (135)
T ss_dssp HHHHHTTCHHHHHHHHHHTTCHHHHHHHHCS---SSCCCCCCHHHHHHHHCHHHHHHHHHHHTCCHHHHH-------HHH
T ss_pred HHHHhCCCHHHHHHHHHHCCcHHHHHHHhcC---CCCCCCCCHHHHHHHHChHHHHHHHHHHCcCHHHHH-------HHH
Confidence 333344454444422 2124555666652 3 5669999999999999999999999976653444 347
Q ss_pred hhchHHHHHH
Q psy13866 170 CLNIPAVIYD 179 (201)
Q Consensus 170 C~nip~ai~e 179 (201)
+..+|.+|-.
T Consensus 97 A~~LP~~VD~ 106 (135)
T 1z67_A 97 AEQLPKIIDA 106 (135)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 7778888764
No 10
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=18.78 E-value=2.1e+02 Score=18.81 Aligned_cols=55 Identities=11% Similarity=0.134 Sum_probs=28.6
Q ss_pred cChhhHHHHHHhhccCccccccCCCCchHHHhhch------HHHHHHHHHHhh---cCCCChHHHHHHhhc
Q psy13866 139 KDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNI------PAVIYDVLGAWE---TSVLSSTDVKRILDA 200 (201)
Q Consensus 139 ~Dp~~Vd~Ll~~lns~~~efk~~~~~kW~eiC~ni------p~ai~evL~AwE---~g~lS~~~VkrilD~ 200 (201)
+....++.++..+. ++ . .+.+.|.+..+ ..-++++...+. .|.|+.+|+++++..
T Consensus 6 ~~~~e~~~l~~~~d-~~-----g-~i~~~eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~ 69 (108)
T 2pvb_A 6 LKDADVAAALAACS-AA-----D-SFKHKEFFAKVGLASKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQN 69 (108)
T ss_dssp SCHHHHHHHHHHTC-ST-----T-CCCHHHHHHHHTGGGSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGG
T ss_pred CCHHHHHHHHHHhC-CC-----C-cCcHHHHHHHHhCChhHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHH
Confidence 44556666666664 11 1 23444443322 223444444443 577888887777653
Done!