Query psy13866
Match_columns 201
No_of_seqs 27 out of 29
Neff 3.5
Searched_HMMs 13730
Date Fri Aug 16 22:25:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13866.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13866hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lj8a3 a.100.1.9 (A:287-492) 44.3 7.9 0.00058 29.7 3.3 75 88-172 15-91 (206)
2 d2v9va2 a.4.5.35 (A:438-510) C 37.7 8.6 0.00063 24.6 2.2 30 25-54 30-59 (73)
3 d1x4ka2 g.39.1.3 (A:8-34) Four 30.4 2.7 0.0002 24.0 -1.2 13 156-171 15-27 (27)
4 d1iiea_ a.109.1.1 (A:) Class I 28.5 11 0.0008 25.9 1.5 12 115-126 48-59 (75)
5 d2hf5a1 a.39.1.5 (A:81-113) Tr 24.9 17 0.0013 20.8 1.8 16 186-201 17-32 (33)
6 d1g5ta_ c.37.1.11 (A:) ATP:cor 23.8 20 0.0014 26.7 2.3 23 178-200 101-123 (157)
7 d2f2ab1 a.182.1.2 (B:294-400) 22.3 60 0.0044 21.8 4.6 86 95-200 9-99 (107)
8 d1z67a1 a.259.1.1 (A:3-131) Hy 19.6 44 0.0032 24.4 3.6 47 127-180 56-102 (129)
9 d1izma_ a.199.1.1 (A:) Hypothe 18.6 27 0.002 25.9 2.2 28 8-37 6-33 (170)
10 d1oywa2 c.37.1.19 (A:1-206) Re 14.3 5.4 0.00039 28.9 -2.9 83 7-107 11-95 (206)
No 1
>d1lj8a3 a.100.1.9 (A:287-492) Mannitol 2-dehydrogenase {Pseudomonas fluorescens [TaxId: 294]}
Probab=44.33 E-value=7.9 Score=29.72 Aligned_cols=75 Identities=17% Similarity=0.183 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhhCcceEecCCCCChhHHHHHHHHHhcCCCC-CChhhhhhccCh-hhHHHHHHhhccCccccccCCCCc
Q psy13866 88 ITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMVEGGRP-KPYKKMLDEKDQ-AGVDDLLRQFNSSDAEFKNCPKLN 165 (201)
Q Consensus 88 iSFLmLc~IvQ~YGse~vl~~~~gdsFFe~Wv~~cm~e~~~~-ksP~~~l~~~Dp-~~Vd~Ll~~lns~~~efk~~~~~k 165 (201)
-+=-++++.-+..|.+.|=+-- .|+.|..|++..|-++.-| ..| ....|. +=.+.++.+|.|+. . .=+
T Consensus 15 g~Ht~lay~g~l~G~~~V~ea~-~d~~~~~~~~~~~~~e~~p~l~~---~~~~dl~~Y~~~vl~RF~Np~-----i-~d~ 84 (206)
T d1lj8a3 15 GSHLALTYLGFLKGYRFVHETM-NDPLFVAYMRAYMDLDVTPNLAP---VPGIDLTDYKQTLVDRFSNQA-----I-ADQ 84 (206)
T ss_dssp HHHHHHHHHHHHHTCCBHHHHH-TSHHHHHHHHHHHHHTTGGGCCC---CTTCCHHHHHHHHHHHHTCTT-----T-CCB
T ss_pred HHHHHHHHHHHHcCcchHHHHH-cCHHHHHHHHHHHHhccccccCC---CCCCCHHHHHHHHHHhcCCCC-----C-CCc
Confidence 3445788999999999886655 7999999999999988753 211 112232 46788999998887 2 334
Q ss_pred hHHHhhc
Q psy13866 166 CYEICLN 172 (201)
Q Consensus 166 W~eiC~n 172 (201)
+..||.+
T Consensus 85 ~~rIa~d 91 (206)
T d1lj8a3 85 LERVCSD 91 (206)
T ss_dssp HHHHHTT
T ss_pred hhhhccc
Confidence 6777765
No 2
>d2v9va2 a.4.5.35 (A:438-510) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=37.73 E-value=8.6 Score=24.61 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=27.5
Q ss_pred HHHHHHHHhhhccchHHHHHHHHHhhcchh
Q psy13866 25 DALLNVLSQVLNGKSFDLILAVAAVEGKLC 54 (201)
Q Consensus 25 e~Ll~~L~~mlsGkSfdlilAaAa~~GkLk 54 (201)
|.|-+++..-+.-+.|+.+|.....+|.++
T Consensus 30 eeLr~~l~~~~~~~~f~~lL~~l~~~g~l~ 59 (73)
T d2v9va2 30 EELRSRYFSRLPARVYQALLEEWSREGRLQ 59 (73)
T ss_dssp HHHHHHHCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHCCChh
Confidence 779999999999999999999999999875
No 3
>d1x4ka2 g.39.1.3 (A:8-34) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.42 E-value=2.7 Score=24.01 Aligned_cols=13 Identities=31% Similarity=0.644 Sum_probs=10.3
Q ss_pred cccccCCCCchHHHhh
Q psy13866 156 AEFKNCPKLNCYEICL 171 (201)
Q Consensus 156 ~efk~~~~~kW~eiC~ 171 (201)
.|+|.+ + |||-|+
T Consensus 15 me~kG~-~--WHEtCF 27 (27)
T d1x4ka2 15 MEYKGS-S--WHETCF 27 (27)
T ss_dssp EEETTE-E--EETTTT
T ss_pred ecccCC-c--cccccC
Confidence 588877 5 999995
No 4
>d1iiea_ a.109.1.1 (A:) Class II MHC-associated invariant chain ectoplasmic trimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.49 E-value=11 Score=25.86 Aligned_cols=12 Identities=25% Similarity=0.733 Sum_probs=9.9
Q ss_pred HHHHHHHHHhcC
Q psy13866 115 FEKWVRDCMVEG 126 (201)
Q Consensus 115 Fe~Wv~~cm~e~ 126 (201)
||+|+|.|+.=+
T Consensus 48 FEsWM~~WLlFe 59 (75)
T d1iiea_ 48 FESWMHHWLLFE 59 (75)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 899999997543
No 5
>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}
Probab=24.89 E-value=17 Score=20.83 Aligned_cols=16 Identities=6% Similarity=0.474 Sum_probs=13.5
Q ss_pred cCCCChHHHHHHhhcC
Q psy13866 186 TSVLSSTDVKRILDAM 201 (201)
Q Consensus 186 ~g~lS~~~VkrilD~l 201 (201)
+|.||..|+++++-+|
T Consensus 17 ~G~Is~~EL~~vm~~l 32 (33)
T d2hf5a1 17 NGYISAAELRHVMTNL 32 (33)
T ss_dssp CSCBCHHHHHHHTTSC
T ss_pred CCcCcHHHHHHHHHHc
Confidence 6899999999988664
No 6
>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}
Probab=23.75 E-value=20 Score=26.72 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=20.7
Q ss_pred HHHHHHhhcCCCChHHHHHHhhc
Q psy13866 178 YDVLGAWETSVLSSTDVKRILDA 200 (201)
Q Consensus 178 ~evL~AwE~g~lS~~~VkrilD~ 200 (201)
-||+.|...|.|+.+||..++++
T Consensus 101 DEi~~Ai~~gli~~~~v~~ll~~ 123 (157)
T d1g5ta_ 101 DELTYMVAYDYLPLEEVISALNA 123 (157)
T ss_dssp ETHHHHHHTTSSCHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCHHHHHHHHHh
Confidence 48889999999999999999875
No 7
>d2f2ab1 a.182.1.2 (B:294-400) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=22.32 E-value=60 Score=21.84 Aligned_cols=86 Identities=17% Similarity=0.210 Sum_probs=53.5
Q ss_pred HHHHhhCcce----EecCC-CCChhHHHHHHHHHhcCCCCCChhhhhhccChhhHHHHHHhhccCccccccCCCCchHHH
Q psy13866 95 SIVQRYGSKV----VFSEN-GGDSFFEKWVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEI 169 (201)
Q Consensus 95 ~IvQ~YGse~----vl~~~-~gdsFFe~Wv~~cm~e~~~~ksP~~~l~~~Dp~~Vd~Ll~~lns~~~efk~~~~~kW~ei 169 (201)
+.+..||-.- +|..+ +-..|||.=+. ..++|... .+ =.+-+|+..+|..+.++..+ .
T Consensus 9 R~~~~ygL~~~da~~L~~~~~l~~~FE~~~~-------~~~~~k~~-aN---wl~~el~~~ln~~~~~i~~~-~------ 70 (107)
T d2f2ab1 9 KYVNELGLPAYDAHVLTLTKEMSDFFESTIE-------HGADVKLT-SN---WLMGGVNEYLNKNQVELLDT-K------ 70 (107)
T ss_dssp HHHHTTCCCHHHHHHHTSSHHHHHHHHHHHT-------TTCCHHHH-HH---HHHTHHHHHHHTTTCCTTTS-S------
T ss_pred HHHHHcCcCHHHHHHHHccHHHHHHHHHHHH-------hcCCHHHH-HH---HHHHHHHHHHHhcCCccccC-C------
Confidence 4556677543 33332 23678887443 22334222 11 13456778888665444433 2
Q ss_pred hhchHHHHHHHHHHhhcCCCChHHHHHHhhc
Q psy13866 170 CLNIPAVIYDVLGAWETSVLSSTDVKRILDA 200 (201)
Q Consensus 170 C~nip~ai~evL~AwE~g~lS~~~VkrilD~ 200 (201)
--|.-+-+++..-+.|.||..--|.+++-
T Consensus 71 --i~~~~la~Li~lv~~g~Is~~~aK~vl~~ 99 (107)
T d2f2ab1 71 --LTPENLAGMIKLIEDGTMSSKIAKKVFPE 99 (107)
T ss_dssp --CCHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred --cCHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 24888999999999999999999998864
No 8
>d1z67a1 a.259.1.1 (A:3-131) Hypothetical protein YidB {Shigella flexneri [TaxId: 623]}
Probab=19.62 E-value=44 Score=24.38 Aligned_cols=47 Identities=11% Similarity=0.162 Sum_probs=37.9
Q ss_pred CCCCChhhhhhccChhhHHHHHHhhccCccccccCCCCchHHHhhchHHHHHHH
Q psy13866 127 GRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDV 180 (201)
Q Consensus 127 ~~~ksP~~~l~~~Dp~~Vd~Ll~~lns~~~efk~~~~~kW~eiC~nip~ai~ev 180 (201)
+.|.+|+++-.-..++.++.+-+++--+..+.. .-++..+|.+|-.+
T Consensus 56 N~pIs~~ql~~~lG~d~l~~lA~q~Gl~~~~~~-------~~LA~~LP~~Vd~l 102 (129)
T d1z67a1 56 NQSVSGEQLESALGTNAVSDLGQKLGVDTSTAS-------SLLAEQLPKIIDAL 102 (129)
T ss_dssp CCCCCHHHHHHHHCHHHHHHHHHHHTCCHHHHH-------HHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHhCHHHHHHHHHHHCcCHHHHH-------HHHHHHhHHHHhcc
Confidence 679999999999999999999999986653444 34788888888654
No 9
>d1izma_ a.199.1.1 (A:) Hypothetical protein HI0817 {Haemophilus influenzae [TaxId: 727]}
Probab=18.58 E-value=27 Score=25.93 Aligned_cols=28 Identities=25% Similarity=0.410 Sum_probs=21.4
Q ss_pred cHHHHHHhhccccccchHHHHHHHHhhhcc
Q psy13866 8 TLARVLRTLDTEFSKIQDALLNVLSQVLNG 37 (201)
Q Consensus 8 tl~~IlKtl~aD~sK~qe~Ll~~L~~mlsG 37 (201)
.+++.|+..+...| +-.+.|+||++++|
T Consensus 6 ~l~~~L~~~g~~~s--psElHG~L~Gll~~ 33 (170)
T d1izma_ 6 DMNQQLKSAGIGFN--ATELHGFLSGLLCG 33 (170)
T ss_dssp HHHHHHHHTTCSCC--HHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCC--HHHHHHHHHHHHcC
Confidence 47788888887544 44599999999875
No 10
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=14.32 E-value=5.4 Score=28.88 Aligned_cols=83 Identities=16% Similarity=0.162 Sum_probs=50.0
Q ss_pred ccHHHHHHhhc--cccccchHHHHHHHHhhhccchHHHHHHHHHhhcchhHHHHHhcccccccccCCCCCCccccchhHh
Q psy13866 7 PTLARVLRTLD--TEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFNECSKQSNPSDTSKTAQTKVM 84 (201)
Q Consensus 7 ptl~~IlKtl~--aD~sK~qe~Ll~~L~~mlsGkSfdlilAaAa~~GkLk~Fa~kLIk~NE~~K~~~~e~~~K~a~~ra~ 84 (201)
+-..++||.+- ..|...|+.- +..++.|+ |+++.+.|..||=-.|.--.++ +..+ . --.++++++
T Consensus 11 ~~~~~~l~~~fg~~~~rp~Q~~a---i~~~l~g~--~vlv~apTGsGKT~~~~~~~~~--~~~~-----~-~~v~P~~~L 77 (206)
T d1oywa2 11 SGAKQVLQETFGYQQFRPGQEEI---IDTVLSGR--DCLVVMPTGGGKSLCYQIPALL--LNGL-----T-VVVSPLISL 77 (206)
T ss_dssp HHHHHHHHHTTCCSSCCTTHHHH---HHHHHTTC--CEEEECSCHHHHHHHHHHHHHH--SSSE-----E-EEECSCHHH
T ss_pred HHHHHHHHHhcCCCCCCHHHHHH---HHHHHcCC--CEEEEcCCCCCCcchhhhhhhh--ccCc-----e-EEeccchhh
Confidence 44667788664 3555667433 34567787 5799999999996555444333 2211 1 234566777
Q ss_pred hhhHHHHHHHHHHHhhCcceEec
Q psy13866 85 LFDITFLMLCSIVQRYGSKVVFS 107 (201)
Q Consensus 85 LFDiSFLmLc~IvQ~YGse~vl~ 107 (201)
.-|... -.+.+|.+....
T Consensus 78 ~~q~~~-----~l~~~~~~~~~~ 95 (206)
T d1oywa2 78 MKDQVD-----QLQANGVAAACL 95 (206)
T ss_dssp HHHHHH-----HHHHTTCCEEEE
T ss_pred hhhHHH-----HHHhhccccccc
Confidence 777643 446777776443
Done!