Your job contains 1 sequence.
>psy13866
VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL
IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVR
DCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDV
LGAWETSVLSSTDVKRILDAM
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy13866
(201 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0035851 - symbol:MED24 "Mediator complex subunit 2... 433 1.2e-39 1
UNIPROTKB|H9L063 - symbol:MED24 "Mediator of RNA polymera... 388 7.8e-35 1
UNIPROTKB|Q5F3M0 - symbol:MED24 "Mediator of RNA polymera... 388 7.8e-35 1
ZFIN|ZDB-GENE-030131-2341 - symbol:med24 "mediator comple... 388 7.9e-35 1
UNIPROTKB|F1MUK2 - symbol:MED24 "Uncharacterized protein"... 378 9.3e-34 1
MGI|MGI:1344385 - symbol:Med24 "mediator complex subunit ... 375 1.9e-33 1
RGD|1564565 - symbol:Med24 "mediator complex subunit 24" ... 375 1.9e-33 1
UNIPROTKB|Q4V8B3 - symbol:Med24 "Mediator of RNA polymera... 375 1.9e-33 1
UNIPROTKB|F5H5K2 - symbol:MED24 "Mediator of RNA polymera... 367 8.3e-33 1
UNIPROTKB|O75448 - symbol:MED24 "Mediator of RNA polymera... 367 1.4e-32 1
>FB|FBgn0035851 [details] [associations]
symbol:MED24 "Mediator complex subunit 24" species:7227
"Drosophila melanogaster" [GO:0016592 "mediator complex"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0006367 "transcription initiation from
RNA polymerase II promoter" evidence=ISS] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0007517 "muscle organ development"
evidence=IMP] [GO:0043067 "regulation of programmed cell death"
evidence=IMP] [GO:0035070 "salivary gland histolysis" evidence=IMP]
[GO:0035209 "pupal development" evidence=IMP] [GO:0043068 "positive
regulation of programmed cell death" evidence=IMP] [GO:0006919
"activation of cysteine-type endopeptidase activity involved in
apoptotic process" evidence=IMP] EMBL:AE014296 GO:GO:0048813
GO:GO:0006919 GO:GO:0007517 GO:GO:0006367 GO:GO:0043068
GO:GO:0016592 GO:GO:0001104 GO:GO:0035070 CTD:9862 eggNOG:NOG87548
KO:K15167 InterPro:IPR021429 Pfam:PF11277 EMBL:AF289998
EMBL:AY122223 EMBL:BT025232 RefSeq:NP_648185.1 UniGene:Dm.3405
STRING:Q9VSF2 PaxDb:Q9VSF2 EnsemblMetazoa:FBtr0076694 GeneID:38914
KEGG:dme:Dmel_CG7999 FlyBase:FBgn0035851
GeneTree:ENSGT00390000016438 InParanoid:Q9VSF2 OMA:QWGINIK
OrthoDB:EOG4V9S5J PhylomeDB:Q9VSF2 GenomeRNAi:38914 NextBio:810992
Bgee:Q9VSF2 GO:GO:0035209 Uniprot:Q9VSF2
Length = 993
Score = 433 (157.5 bits), Expect = 1.2e-39, P = 1.2e-39
Identities = 102/195 (52%), Positives = 130/195 (66%)
Query: 5 AEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFN 64
AE L+ VL+TL T +K+QD ++NVL QV G SF+LIL+VA VEG+L TFV++LI+ N
Sbjct: 419 AEVPLSGVLKTLCT--NKVQD-MVNVLCQVPVGNSFELILSVATVEGRLKTFVSRLIQCN 475
Query: 65 ECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMV 124
E SK P D K + LFD++FLML SIVQ YGS VV SE G DSFFEKWVR+CMV
Sbjct: 476 ENSKPV-PGDLGKLCVIRSTLFDVSFLMLTSIVQTYGSDVVLSERG-DSFFEKWVRECMV 533
Query: 125 EGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLGAW 184
E + K +++L D + VD+LL F+ +A L+ E CLN+P V++ VL AW
Sbjct: 534 ERNKLKNPRQILALCDDSIVDELLLSFSKPEASQLKPNNLSWQETCLNLPGVLHHVLIAW 593
Query: 185 ETSVLSSTDVKRILD 199
E LSS DVK ILD
Sbjct: 594 EQETLSSADVKSILD 608
>UNIPROTKB|H9L063 [details] [associations]
symbol:MED24 "Mediator of RNA polymerase II transcription
subunit 24" species:9031 "Gallus gallus" [GO:0001104 "RNA
polymerase II transcription cofactor activity" evidence=IEA]
[GO:0004872 "receptor activity" evidence=IEA] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=IEA] [GO:0016592 "mediator complex" evidence=IEA]
[GO:0019827 "stem cell maintenance" evidence=IEA] [GO:0030521
"androgen receptor signaling pathway" evidence=IEA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0046966 "thyroid hormone receptor binding" evidence=IEA]
InterPro:IPR021429 Pfam:PF11277 GeneTree:ENSGT00390000016438
OMA:QWGINIK EMBL:AADN02050845 EMBL:AADN02050846 EMBL:AADN02050847
EMBL:AADN02050848 EMBL:AADN02050849 Ensembl:ENSGALT00000021997
Uniprot:H9L063
Length = 986
Score = 388 (141.6 bits), Expect = 7.8e-35, P = 7.8e-35
Identities = 85/202 (42%), Positives = 126/202 (62%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 406 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFAWKF 465
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENG-GDS--FFEK 117
IK NE +K + ++ SK+A + +LFDI+FLMLC + Q YGS+V+ SE+ D FFE
Sbjct: 466 IKLNEFTKHIS-TENSKSAPVRALLFDISFLMLCHVAQTYGSEVILSESRPADEVPFFET 524
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W+ CM E G+ D V+ L+ N+S +E K ++N +E+CL+I A I
Sbjct: 525 WMLTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQINWHEVCLSISAAI 582
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE SVL+ +++I D
Sbjct: 583 LEILNAWENSVLTFESIQKITD 604
>UNIPROTKB|Q5F3M0 [details] [associations]
symbol:MED24 "Mediator of RNA polymerase II transcription
subunit 24" species:9031 "Gallus gallus" [GO:0003712 "transcription
cofactor activity" evidence=ISS] [GO:0004872 "receptor activity"
evidence=ISS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=ISS] [GO:0001104 "RNA polymerase
II transcription cofactor activity" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0030518 "intracellular steroid hormone receptor signaling
pathway" evidence=ISS] [GO:0030521 "androgen receptor signaling
pathway" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0046966 "thyroid hormone receptor binding" evidence=ISS]
GO:GO:0005634 GO:GO:0045893 GO:GO:0030521 GO:GO:0004872
GO:GO:0006367 GO:GO:0046966 GO:GO:0001104 EMBL:AJ851630
IPI:IPI00651373 RefSeq:NP_001026534.1 UniGene:Gga.7448
STRING:Q5F3M0 GeneID:426134 KEGG:gga:426134 CTD:9862
eggNOG:NOG87548 HOGENOM:HOG000293419 HOVERGEN:HBG055588
InParanoid:Q5F3M0 KO:K15167 OrthoDB:EOG4F1X2C NextBio:20827838
InterPro:IPR021429 Pfam:PF11277 Uniprot:Q5F3M0
Length = 986
Score = 388 (141.6 bits), Expect = 7.8e-35, P = 7.8e-35
Identities = 85/202 (42%), Positives = 126/202 (62%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 406 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFAWKF 465
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENG-GDS--FFEK 117
IK NE +K + ++ SK+A + +LFDI+FLMLC + Q YGS+V+ SE+ D FFE
Sbjct: 466 IKLNEFTKHIS-TENSKSAPVRALLFDISFLMLCHVAQTYGSEVILSESRPADEVPFFET 524
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W+ CM E G+ D V+ L+ N+S +E K ++N +E+CL+I A I
Sbjct: 525 WMLTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQINWHEVCLSISAAI 582
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE SVL+ +++I D
Sbjct: 583 LEILNAWENSVLTFESIQKITD 604
>ZFIN|ZDB-GENE-030131-2341 [details] [associations]
symbol:med24 "mediator complex subunit 24"
species:7955 "Danio rerio" [GO:0046549 "retinal cone cell
development" evidence=IMP] [GO:0048484 "enteric nervous system
development" evidence=IMP] [GO:0048538 "thymus development"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0007399 "nervous
system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA]
ZFIN:ZDB-GENE-030131-2341 GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0048538 GO:GO:0048484 GO:GO:0046549 CTD:9862 eggNOG:NOG87548
HOGENOM:HOG000293419 HOVERGEN:HBG055588 KO:K15167 OrthoDB:EOG4F1X2C
InterPro:IPR021429 Pfam:PF11277 EMBL:DQ300265 EMBL:BC068408
IPI:IPI00495777 RefSeq:NP_001034151.1 UniGene:Dr.117152
STRING:Q2PW47 GeneID:323621 KEGG:dre:323621 InParanoid:Q6NUW0
NextBio:20808350 ArrayExpress:Q2PW47 Bgee:Q2PW47 Uniprot:Q2PW47
Length = 989
Score = 388 (141.6 bits), Expect = 7.9e-35, P = 7.9e-35
Identities = 87/202 (43%), Positives = 123/202 (60%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 408 LILRAEPTVTNILKTVDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 467
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
IK NE K + + SK+A + +LFDI+FLMLC +VQ YGS+V+ S+ S FFE
Sbjct: 468 IKLNEFPKHIS-GEGSKSASVRALLFDISFLMLCHVVQTYGSEVILSDPSPSSETPFFET 526
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ + V+ L+ NSS +E K ++ +EICL+ PA I
Sbjct: 527 WLQTCMPEEGKTLNPDHPCFRPESGKVESLVALLNSS-SEMK-LVQMKWHEICLSTPAAI 584
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
+VL AWE VLS V++I D
Sbjct: 585 LEVLNAWENGVLSVEAVQKITD 606
>UNIPROTKB|F1MUK2 [details] [associations]
symbol:MED24 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0030521 "androgen receptor
signaling pathway" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016592 "mediator complex"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] [GO:0004872 "receptor
activity" evidence=IEA] [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=IEA] GO:GO:0045893
GO:GO:0030521 GO:GO:0004872 GO:GO:0006367 GO:GO:0016592
GO:GO:0001104 CTD:9862 KO:K15167 InterPro:IPR021429 Pfam:PF11277
GeneTree:ENSGT00390000016438 OMA:QWGINIK EMBL:DAAA02049128
IPI:IPI00709712 RefSeq:XP_003587476.1 UniGene:Bt.23964
UniGene:Bt.74344 Ensembl:ENSBTAT00000028616 GeneID:504613
KEGG:bta:504613 Uniprot:F1MUK2
Length = 989
Score = 378 (138.1 bits), Expect = 9.3e-34, P = 9.3e-34
Identities = 83/202 (41%), Positives = 121/202 (59%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 409 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 468
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGDSFF-EK 117
I NE + + T K A + +LFDI+FLMLC + Q YGS+V+ SE+ GG+ FF E
Sbjct: 469 INLNEFTTHRSEEST-KAASVRALLFDISFLMLCHVAQTYGSEVILSESNTGGEVFFFET 527
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CLNI A I
Sbjct: 528 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEIK-LVQMKWHEACLNISAAI 585
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 586 LEILNAWENGVLAFESIQKITD 607
>MGI|MGI:1344385 [details] [associations]
symbol:Med24 "mediator complex subunit 24" species:10090
"Mus musculus" [GO:0001104 "RNA polymerase II transcription
cofactor activity" evidence=ISO] [GO:0003712 "transcription
cofactor activity" evidence=ISO] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0004402 "histone
acetyltransferase activity" evidence=ISO] [GO:0004872 "receptor
activity" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0006367 "transcription initiation from
RNA polymerase II promoter" evidence=ISO] [GO:0016573 "histone
acetylation" evidence=ISO] [GO:0016592 "mediator complex"
evidence=IDA] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0030518 "intracellular steroid hormone receptor signaling
pathway" evidence=ISO] [GO:0030521 "androgen receptor signaling
pathway" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0046966 "thyroid
hormone receptor binding" evidence=ISO] [GO:0051291 "protein
heterooligomerization" evidence=ISO] MGI:MGI:1344385 GO:GO:0051291
GO:GO:0045893 GO:GO:0030521 GO:GO:0004872 Reactome:REACT_127416
GO:GO:0003713 GO:GO:0006366 GO:GO:0006367 GO:GO:0019827
GO:GO:0004402 EMBL:AL590963 Reactome:REACT_27166 GO:GO:0016592
GO:GO:0001104 CTD:9862 eggNOG:NOG87548 HOGENOM:HOG000293419
HOVERGEN:HBG055588 KO:K15167 OrthoDB:EOG4F1X2C InterPro:IPR021429
Pfam:PF11277 GeneTree:ENSGT00390000016438 EMBL:AF126543
EMBL:AF483498 EMBL:AF483499 EMBL:AK020269 EMBL:AK154618
EMBL:BC005409 IPI:IPI00165717 IPI:IPI00474362 IPI:IPI00857417
RefSeq:NP_035999.2 UniGene:Mm.246493 ProteinModelPortal:Q99K74
IntAct:Q99K74 STRING:Q99K74 PhosphoSite:Q99K74 PaxDb:Q99K74
PRIDE:Q99K74 Ensembl:ENSMUST00000017354 GeneID:23989 KEGG:mmu:23989
UCSC:uc007lgz.1 UCSC:uc007lha.1 UCSC:uc007lhc.1 NextBio:303889
Bgee:Q99K74 CleanEx:MM_MED24 Genevestigator:Q99K74 Uniprot:Q99K74
Length = 987
Score = 375 (137.1 bits), Expect = 1.9e-33, P = 1.9e-33
Identities = 81/202 (40%), Positives = 123/202 (60%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 407 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 466
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENG-GDS--FFEK 117
I NE + + +++KTA + +LFDI+FLMLC + Q YGS+V+ SE+ G+ FFE
Sbjct: 467 INLNEFTTHGS-GESTKTASVRALLFDISFLMLCHVAQTYGSEVILSESSSGEEVPFFET 525
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 526 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 583
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 584 LEILNAWENGVLAFESIQKITD 605
>RGD|1564565 [details] [associations]
symbol:Med24 "mediator complex subunit 24" species:10116 "Rattus
norvegicus" [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0004402 "histone acetyltransferase
activity" evidence=IDA] [GO:0004872 "receptor activity"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0016573 "histone
acetylation" evidence=IDA] [GO:0016592 "mediator complex"
evidence=IEA;ISO] [GO:0019827 "stem cell maintenance"
evidence=IEA;ISO] [GO:0030518 "intracellular steroid hormone
receptor signaling pathway" evidence=ISO] [GO:0030521 "androgen
receptor signaling pathway" evidence=IEA;ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA;ISO]
[GO:0046966 "thyroid hormone receptor binding" evidence=IEA;ISO]
[GO:0051291 "protein heterooligomerization" evidence=IDA]
RGD:1564565 GO:GO:0005634 GO:GO:0051291 GO:GO:0006355 GO:GO:0006351
GO:GO:0003713 GO:GO:0004402 CTD:9862 eggNOG:NOG87548
HOGENOM:HOG000293419 HOVERGEN:HBG055588 KO:K15167
InterPro:IPR021429 Pfam:PF11277 GeneTree:ENSGT00390000016438
OMA:QWGINIK EMBL:BC097461 IPI:IPI00203892 RefSeq:NP_001029251.1
UniGene:Rn.7360 STRING:Q4V8B3 PhosphoSite:Q4V8B3 PRIDE:Q4V8B3
Ensembl:ENSRNOT00000011947 GeneID:619436 KEGG:rno:619436
UCSC:RGD:1564565 InParanoid:Q4V8B3 NextBio:714632
ArrayExpress:Q4V8B3 Genevestigator:Q4V8B3 Uniprot:Q4V8B3
Length = 987
Score = 375 (137.1 bits), Expect = 1.9e-33, P = 1.9e-33
Identities = 81/202 (40%), Positives = 123/202 (60%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 407 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 466
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENG-GDS--FFEK 117
I NE + + +++KTA + +LFDI+FLMLC + Q YGS+V+ SE+ G+ FFE
Sbjct: 467 INLNEFTTHGS-GESTKTASVRALLFDISFLMLCHVAQTYGSEVILSESSSGEEVPFFET 525
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 526 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 583
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 584 LEILNAWENGVLAFESIQKITD 605
>UNIPROTKB|Q4V8B3 [details] [associations]
symbol:Med24 "Mediator of RNA polymerase II transcription
subunit 24" species:10116 "Rattus norvegicus" [GO:0001104 "RNA
polymerase II transcription cofactor activity" evidence=IEA]
[GO:0004872 "receptor activity" evidence=IEA] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=IEA] [GO:0016592 "mediator complex" evidence=IEA]
[GO:0019827 "stem cell maintenance" evidence=IEA] [GO:0030521
"androgen receptor signaling pathway" evidence=IEA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0046966 "thyroid hormone receptor binding" evidence=IEA]
RGD:1564565 GO:GO:0005634 GO:GO:0051291 GO:GO:0006355 GO:GO:0006351
GO:GO:0003713 GO:GO:0004402 CTD:9862 eggNOG:NOG87548
HOGENOM:HOG000293419 HOVERGEN:HBG055588 KO:K15167
InterPro:IPR021429 Pfam:PF11277 GeneTree:ENSGT00390000016438
OMA:QWGINIK EMBL:BC097461 IPI:IPI00203892 RefSeq:NP_001029251.1
UniGene:Rn.7360 STRING:Q4V8B3 PhosphoSite:Q4V8B3 PRIDE:Q4V8B3
Ensembl:ENSRNOT00000011947 GeneID:619436 KEGG:rno:619436
UCSC:RGD:1564565 InParanoid:Q4V8B3 NextBio:714632
ArrayExpress:Q4V8B3 Genevestigator:Q4V8B3 Uniprot:Q4V8B3
Length = 987
Score = 375 (137.1 bits), Expect = 1.9e-33, P = 1.9e-33
Identities = 81/202 (40%), Positives = 123/202 (60%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 407 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 466
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENG-GDS--FFEK 117
I NE + + +++KTA + +LFDI+FLMLC + Q YGS+V+ SE+ G+ FFE
Sbjct: 467 INLNEFTTHGS-GESTKTASVRALLFDISFLMLCHVAQTYGSEVILSESSSGEEVPFFET 525
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 526 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 583
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 584 LEILNAWENGVLAFESIQKITD 605
>UNIPROTKB|F5H5K2 [details] [associations]
symbol:MED24 "Mediator of RNA polymerase II transcription
subunit 24" species:9606 "Homo sapiens" [GO:0003713 "transcription
coactivator activity" evidence=IEA] [GO:0004402 "histone
acetyltransferase activity" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016592 "mediator complex" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0051291 "protein
heterooligomerization" evidence=IEA] EMBL:AC090844
InterPro:IPR021429 Pfam:PF11277 EMBL:AC102799 HGNC:HGNC:22963
ChiTaRS:MED24 IPI:IPI01015154 Ensembl:ENST00000535071
ArrayExpress:F5H5K2 Uniprot:F5H5K2
Length = 791
Score = 367 (134.2 bits), Expect = 8.3e-33, P = 8.3e-33
Identities = 81/202 (40%), Positives = 120/202 (59%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 359 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 418
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
I NE + + T K A + +LFDI+FLMLC + Q YGS+V+ SE+ G + FFE
Sbjct: 419 INLNEFTTYGSEEST-KPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAEVPFFET 477
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 478 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 535
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 536 LEILNAWENGVLAFESIQKITD 557
>UNIPROTKB|O75448 [details] [associations]
symbol:MED24 "Mediator of RNA polymerase II transcription
subunit 24" species:9606 "Homo sapiens" [GO:0004402 "histone
acetyltransferase activity" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0051291 "protein
heterooligomerization" evidence=IEA] [GO:0016592 "mediator complex"
evidence=NAS] [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=IDA] [GO:0030521 "androgen receptor signaling
pathway" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0004872 "receptor activity" evidence=IDA] [GO:0030518
"intracellular steroid hormone receptor signaling pathway"
evidence=IDA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=NAS] [GO:0046966 "thyroid hormone
receptor binding" evidence=IDA] [GO:0003712 "transcription cofactor
activity" evidence=IDA] [GO:0042809 "vitamin D receptor binding"
evidence=NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
Reactome:REACT_71 EMBL:AF055995 Reactome:REACT_111045 GO:GO:0051291
GO:GO:0045893 GO:GO:0030521 GO:GO:0004872 GO:GO:0006367
GO:GO:0046966 GO:GO:0030374 GO:GO:0004402 GO:GO:0016592
GO:GO:0001104 EMBL:AC090844 GO:GO:0042809 CTD:9862 eggNOG:NOG87548
HOGENOM:HOG000293419 HOVERGEN:HBG055588 KO:K15167 OrthoDB:EOG4F1X2C
InterPro:IPR021429 Pfam:PF11277 OMA:QWGINIK EMBL:AF277379
EMBL:D50920 EMBL:AK022508 EMBL:AK291040 EMBL:AC102799 EMBL:BC011375
IPI:IPI00792423 IPI:IPI00794854 RefSeq:NP_001072986.1
RefSeq:NP_001254726.1 RefSeq:NP_055630.2 UniGene:Hs.462983
ProteinModelPortal:O75448 DIP:DIP-31462N IntAct:O75448
MINT:MINT-244199 STRING:O75448 PhosphoSite:O75448 PaxDb:O75448
PRIDE:O75448 DNASU:9862 Ensembl:ENST00000356271
Ensembl:ENST00000394127 Ensembl:ENST00000394128 GeneID:9862
KEGG:hsa:9862 UCSC:uc002hts.3 UCSC:uc002htu.3 GeneCards:GC17M038175
H-InvDB:HIX0174136 HGNC:HGNC:22963 HPA:HPA039547 MIM:607000
neXtProt:NX_O75448 PharmGKB:PA162395566 InParanoid:O75448
PhylomeDB:O75448 ChiTaRS:MED24 GenomeRNAi:9862 NextBio:37176
ArrayExpress:O75448 Bgee:O75448 CleanEx:HS_MED24
Genevestigator:O75448 GermOnline:ENSG00000008838 Uniprot:O75448
Length = 989
Score = 367 (134.2 bits), Expect = 1.4e-32, P = 1.4e-32
Identities = 81/202 (40%), Positives = 120/202 (59%)
Query: 1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
+I+ AEPT+ +L+T+D + SK + LL VL +L+GKS DL+LA AA GKL +F K
Sbjct: 409 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 468
Query: 61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
I NE + + T K A + +LFDI+FLMLC + Q YGS+V+ SE+ G + FFE
Sbjct: 469 INLNEFTTYGSEEST-KPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAEVPFFET 527
Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
W++ CM E G+ D V+ L+ N+S +E K ++ +E CL+I A I
Sbjct: 528 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 585
Query: 178 YDVLGAWETSVLSSTDVKRILD 199
++L AWE VL+ +++I D
Sbjct: 586 LEILNAWENGVLAFESIQKITD 607
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.399 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 201 201 0.00089 111 3 11 22 0.45 32
31 0.45 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 10
No. of states in DFA: 598 (64 KB)
Total size of DFA: 171 KB (2100 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:05
No. of threads or processors used: 24
Search cpu time: 18.61u 0.09s 18.70t Elapsed: 00:00:16
Total cpu time: 18.61u 0.09s 18.70t Elapsed: 00:00:24
Start: Thu Aug 15 13:45:00 2013 End: Thu Aug 15 13:45:24 2013