RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13866
(201 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.002
Identities = 31/205 (15%), Positives = 57/205 (27%), Gaps = 81/205 (39%)
Query: 13 LRTL-DTEFSKIQDALLNVLSQVLN-------------GKSFDLI--------------L 44
LR L T + D L+ ++ L+ + +++ L
Sbjct: 173 LRDLYQTYHVLVGD-LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 45 AVAAVEGKLCTFVTKLIKFNECSKQS--NPSDTSKTAQTKVMLFDITFLMLCS--IVQRY 100
+ L V +L + +K P + + S +V
Sbjct: 232 LSIPISCPL-IGVIQLAHYVVTAKLLGFTPGELRSYLKG---------ATGHSQGLV--- 278
Query: 101 GSKVVFSE-NGGDSFFEK---------W------------------VRDCMVEG-GRPKP 131
+ V +E + +SFF + + D + G P P
Sbjct: 279 -TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337
Query: 132 YKKMLDEKD--QAGVDDLLRQFNSS 154
ML + Q V D + + NS
Sbjct: 338 ---MLSISNLTQEQVQDYVNKTNSH 359
Score = 30.0 bits (67), Expect = 0.56
Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 129 PKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLGAWETSV 188
P+P + + + +L+ +F + K+ ++ LN+ L +E
Sbjct: 42 PEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNL------CLTEFENCY 95
Query: 189 LSSTDV 194
L D+
Sbjct: 96 LEGNDI 101
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.002
Identities = 24/141 (17%), Positives = 44/141 (31%), Gaps = 32/141 (22%)
Query: 17 DTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFNECSKQSNPSDTS 76
+ + +QD ++LS+ + D I+ L SKQ
Sbjct: 32 NFDCKDVQDMPKSILSK----EEIDHIIMSKDAVSGTLRLFWTL-----LSKQEE---MV 79
Query: 77 KTAQTKVMLFDITFLM---------LCSIVQRYGSKVVFSENGGDSFFEKWVRDCMVEGG 127
+ +V+ + FLM + + Y + N F + V
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS------- 132
Query: 128 RPKPY---KKMLDE-KDQAGV 144
R +PY ++ L E + V
Sbjct: 133 RLQPYLKLRQALLELRPAKNV 153
Score = 32.5 bits (73), Expect = 0.098
Identities = 27/219 (12%), Positives = 60/219 (27%), Gaps = 102/219 (46%)
Query: 11 RVLRTLDTEFSKIQDAL----------------------LNVLSQVLNGKSFDLILAVAA 48
++L T T F ++ D L ++L + L+ + D L
Sbjct: 267 KILLT--TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD--LPREV 322
Query: 49 VEGKLCTFVTKLIKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSE 108
+ NP SI+
Sbjct: 323 LTT-------------------NP-------------------RRLSII----------- 333
Query: 109 NGGDSFFEKWVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYE 168
+S +RD +K + +K ++ L AE++ ++
Sbjct: 334 --AES-----IRD---GLATWDNWKHVNCDKLTTIIESSLNVLEP--AEYR-----KMFD 376
Query: 169 IC------LNIPAVIYDVLGAWETSVLSSTDVKRILDAM 201
+IP ++ ++ W + +DV +++ +
Sbjct: 377 RLSVFPPSAHIPTILLSLI--WFD--VIKSDVMVVVNKL 411
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G
consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB:
2hvg_A
Length = 465
Score = 27.9 bits (62), Expect = 2.3
Identities = 10/71 (14%), Positives = 20/71 (28%), Gaps = 19/71 (26%)
Query: 99 RYGSKV-----VFSENGGDSFFEKWVRDCMVE-------GGRPKPYKKMLDEKDQAGVDD 146
RY FSE+ + + VE ++K + + ++
Sbjct: 14 RYKKACGELSAFFSEHA---LIKHRII---VEVRWLLFLNEEELFFEK-VTDHSVEVLNQ 66
Query: 147 LLRQFNSSDAE 157
+ SD
Sbjct: 67 IATNITDSDIA 77
>1dcu_A Fructose-1,6-bisphosphatase; chloroplast, photosynthesis, redox
regulation, thioredoxin, allostery, hydrolase; 2.20A
{Pisum sativum} SCOP: e.7.1.1 PDB: 1d9q_A 1dbz_A 1spi_A
Length = 357
Score = 27.8 bits (62), Expect = 2.6
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 105 VFSENGG-----DSFFEKWVRDCMVEGGRPKPYK 133
++S N G D +K++ D G KPY
Sbjct: 233 IYSFNEGNYKLWDENLKKYIDDLKEPGPSGKPYS 266
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A
{Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Length = 462
Score = 26.9 bits (59), Expect = 4.7
Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 19/72 (26%)
Query: 99 RYGSKV-----VFSENGGDSFFEKWVRDCMVE-------GGRPK-PYKKMLDEKDQAGVD 145
RYG KV +FSE G + V+ VE +D
Sbjct: 15 RYGDKVSALRGIFSEYG---LLKFRVQ---VEVRWLQKLAAHAAIKEVPAFAADAIGYLD 68
Query: 146 DLLRQFNSSDAE 157
++ F+ DA
Sbjct: 69 AIVASFSEEDAA 80
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure
initiative, midwest center for STR genomics, MCSG; 1.90A
{Legionella pneumophila subsp}
Length = 459
Score = 26.5 bits (58), Expect = 7.7
Identities = 19/72 (26%), Positives = 25/72 (34%), Gaps = 19/72 (26%)
Query: 99 RYGSKV-----VFSENGGDSFFEKWVRDCMVE--------GGRPKPYKKMLDEKDQAGVD 145
RY +K FSE + VE P LD K + +
Sbjct: 18 RYVNKTRALSPYFSEFA---LTYYRLM---VEIKWFESLAANDTIPEVPALDNKARKFLS 71
Query: 146 DLLRQFNSSDAE 157
DL+ FN S+AE
Sbjct: 72 DLISNFNESEAE 83
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.399
Gapped
Lambda K H
0.267 0.0569 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,947,595
Number of extensions: 162107
Number of successful extensions: 240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 8
Length of query: 201
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 112
Effective length of database: 4,216,824
Effective search space: 472284288
Effective search space used: 472284288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.3 bits)