RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13866
         (201 letters)



>d1x9na1 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 272

 Score = 26.5 bits (58), Expect = 2.4
 Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 9  LARVLRTLDTEFS--KIQDALLNVLSQVLNGKSFDLILAVAAVEGKL 53
          +AR    ++   +  ++ + L N+L  V+     DL+  +      L
Sbjct: 31 VARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHL 77


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 715,426
Number of extensions: 30973
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 3
Length of query: 201
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 120
Effective length of database: 1,295,466
Effective search space: 155455920
Effective search space used: 155455920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.0 bits)