BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13868
         (128 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q2GG56|PSD_EHRCR Phosphatidylserine decarboxylase proenzyme OS=Ehrlichia chaffeensis
           (strain Arkansas) GN=psd PE=3 SV=1
          Length = 226

 Score = 32.7 bits (73), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 8/74 (10%)

Query: 1   MAVEENFDNPVNVVIETAGNWGVKETQLLKKGAVVWYTDGSKTEAGSGAGIHCVKPRVNI 60
           + +E   DN   +V + AG        L+ +  V   ++G +  +G   GI     RVN+
Sbjct: 137 LIIESKIDNRSIIVDQIAG--------LIARRIVCNVSEGQQVNSGERFGIIRFGSRVNL 188

Query: 61  SLPLGTYTGVYQAE 74
            LPL T+  V++ +
Sbjct: 189 YLPLNTHISVFKGQ 202


>sp|P48760|FOLC_MOUSE Folylpolyglutamate synthase, mitochondrial OS=Mus musculus GN=Fpgs
           PE=1 SV=3
          Length = 587

 Score = 31.6 bits (70), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 26  TQLLKKGAVVWYTDGSKTEAGSGAGIH 52
           TQ+L++G + WY DG+ T +   A +H
Sbjct: 364 TQILQRGPLTWYLDGAHTTSSVQACVH 390


>sp|Q3YSG2|PSD_EHRCJ Phosphatidylserine decarboxylase proenzyme OS=Ehrlichia canis
           (strain Jake) GN=psd PE=3 SV=1
          Length = 226

 Score = 31.2 bits (69), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)

Query: 1   MAVEENFDNPVNVVIETAGNWGVKETQLLKKGAVVWYTDGSKTEAGSGAGIHCVKPRVNI 60
           + +E N D  + ++ + AG        L+ +  V     G     G   GI     RVNI
Sbjct: 137 LIIESNLDKHLIILDQIAG--------LIARRIVCNAYQGQNVNLGEKFGIIRFGSRVNI 188

Query: 61  SLPLGTYTGVYQAE 74
            LPL T+  V++ +
Sbjct: 189 YLPLSTHISVFKGQ 202


>sp|A6H751|FOLC_BOVIN Folylpolyglutamate synthase, mitochondrial OS=Bos taurus GN=FPGS
           PE=2 SV=1
          Length = 585

 Score = 30.4 bits (67), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)

Query: 26  TQLLKKGAVVWYTDGSKTEAGSGAGIHCVK 55
           TQLL++G + WY DG+ T +   A   CV+
Sbjct: 362 TQLLRRGPLTWYLDGAHTTSSMQA---CVR 388


>sp|Q05932|FOLC_HUMAN Folylpolyglutamate synthase, mitochondrial OS=Homo sapiens GN=FPGS
           PE=1 SV=3
          Length = 587

 Score = 30.4 bits (67), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 3/30 (10%)

Query: 26  TQLLKKGAVVWYTDGSKTEAGSGAGIHCVK 55
           TQ+L++G + WY DG+ T + + A   CV+
Sbjct: 364 TQVLRRGPLTWYLDGAHTASSAQA---CVR 390


>sp|Q06SG7|ATPB_STIHE ATP synthase subunit beta, chloroplastic OS=Stigeoclonium
          helveticum GN=atpB PE=3 SV=1
          Length = 484

 Score = 30.4 bits (67), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 26/46 (56%)

Query: 41 SKTEAGSGAGIHCVKPRVNISLPLGTYTGVYQAEVLAIRNCAEENI 86
          ++T   +G  I  + P V+I+ P G    +Y A V++ +N A E++
Sbjct: 5  TETNKNTGRLIQIIGPVVDIAFPAGNVPNIYNAVVISGKNTAGEDM 50


>sp|P15183|CAPSD_CNV Capsid protein OS=Cucumber necrosis virus GN=ORF2 PE=1 SV=1
          Length = 380

 Score = 29.3 bits (64), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 41  SKTEAGSGAGIHCVKPRVNISLPLGTYTGVYQAEVLAIRNCAEENINM 88
           S + AGS A +  +  RVN +L L   TG   A++ A+R   E  + +
Sbjct: 332 SVSTAGSSAYVANITIRVNANLSLSGLTGATNAQLFAVRAITENAVQV 379


>sp|A3CS45|THIE_METMJ Thiamine-phosphate synthase OS=Methanoculleus marisnigri (strain
           ATCC 35101 / DSM 1498 / JR1) GN=thiE PE=3 SV=1
          Length = 211

 Score = 29.3 bits (64), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 37  YTDGSKTEAGSGAGIHCVKP-RVNISLPLGTYTGVYQAEV 75
           +  GSK +AG G G+  +K  R  +SLPL    G+  A V
Sbjct: 130 FATGSKDDAGPGCGLAALKEIRAAVSLPLVAIGGITAANV 169


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.131    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,812,482
Number of Sequences: 539616
Number of extensions: 1746267
Number of successful extensions: 3071
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3067
Number of HSP's gapped (non-prelim): 10
length of query: 128
length of database: 191,569,459
effective HSP length: 94
effective length of query: 34
effective length of database: 140,845,555
effective search space: 4788748870
effective search space used: 4788748870
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)