Query psy13868
Match_columns 128
No_of_seqs 114 out of 395
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 22:27:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13868.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13868hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hst_B Protein RV2228C/MT2287; 99.6 3.2E-15 1.1E-19 104.9 10.5 88 33-123 3-98 (141)
2 2qkb_A Ribonuclease H1, HS-RNA 99.6 1.4E-15 4.7E-20 109.7 8.7 79 30-110 4-88 (154)
3 3u3g_D Ribonuclease H, RNAse H 99.6 2.9E-15 1E-19 104.5 9.6 92 32-124 2-102 (140)
4 2ehg_A Ribonuclease HI; RNAse 99.5 6.7E-14 2.3E-18 99.8 10.7 89 33-123 1-100 (149)
5 3h08_A RNH (ribonuclease H); R 99.5 1.9E-14 6.5E-19 102.7 6.9 74 32-110 3-80 (146)
6 2kq2_A Ribonuclease H-related 99.5 1.5E-14 5.2E-19 104.1 6.3 84 30-116 3-93 (147)
7 1jl1_A Ribonuclease HI; RNAse 99.5 8.3E-14 2.8E-18 100.8 8.5 73 33-110 4-80 (155)
8 2e4l_A Ribonuclease HI, RNAse 99.5 9.9E-14 3.4E-18 100.8 8.5 74 32-110 5-82 (158)
9 3p1g_A Xenotropic murine leuke 99.5 2.6E-13 8.8E-18 99.9 10.7 77 28-109 18-97 (165)
10 1ril_A Ribonuclease H; hydrola 99.4 1.8E-13 6.1E-18 100.4 6.5 74 32-110 7-84 (166)
11 3qio_A GAG-POL polyprotein; RN 99.4 4.3E-13 1.5E-17 97.1 8.3 74 30-111 9-84 (150)
12 1zbf_A Ribonuclease H-related 99.4 3.4E-13 1.2E-17 97.3 7.4 80 30-113 8-91 (142)
13 4htu_A Ribonuclease H, RNAse H 99.4 4E-13 1.4E-17 96.5 5.0 79 31-113 3-85 (134)
14 2lsn_A Reverse transcriptase; 99.4 3.3E-12 1.1E-16 94.1 9.7 78 30-110 4-93 (165)
15 2zd1_A Reverse transcriptase/r 99.2 2.4E-11 8.3E-16 103.0 9.6 86 31-124 437-526 (557)
16 1mu2_A HIV-2 RT; HIV-2 reverse 99.2 1.2E-10 4.2E-15 98.7 10.3 86 31-124 434-523 (555)
17 1rw3_A POL polyprotein; RNA an 94.5 0.01 3.4E-07 48.7 1.1 78 30-112 343-429 (455)
18 2zd1_B P51 RT; P51/P66, hetero 90.1 1 3.6E-05 36.6 7.6 77 30-109 321-404 (428)
19 2zd1_A Reverse transcriptase/r 52.6 45 0.0015 27.6 7.3 76 30-109 323-406 (557)
20 2z3g_A Blasticidin-S deaminase 51.7 42 0.0014 22.8 5.9 54 45-101 27-80 (130)
21 2fr5_A Cytidine deaminase; tet 44.0 71 0.0024 22.1 6.2 54 45-101 36-91 (146)
22 3oj6_A Blasticidin-S deaminase 34.6 50 0.0017 23.5 4.2 52 46-100 52-103 (158)
23 2d30_A Cytidine deaminase; pur 28.2 1.3E+02 0.0045 20.7 5.4 53 46-101 34-88 (141)
24 1uwz_A Cytidine deaminase; CDD 26.6 1.5E+02 0.0052 20.0 6.2 53 46-101 25-79 (136)
25 3mpz_A Cytidine deaminase; ssg 24.2 1.9E+02 0.0064 20.2 5.7 53 46-101 47-101 (150)
26 2grg_A Hypothetical protein; Y 23.0 45 0.0015 22.7 2.0 17 30-46 95-111 (120)
27 2hhc_A NODZ, nodulation fucosy 22.9 92 0.0031 23.6 4.2 37 75-111 198-235 (330)
No 1
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.62 E-value=3.2e-15 Score=104.91 Aligned_cols=88 Identities=16% Similarity=0.155 Sum_probs=68.6
Q ss_pred cEEEEeeCCccCC--CcceEEEEecCc-----eeEEeecCCCCcchHHHHHHHHHHHHHHHhcCCCCceEEEEeCcHHHH
Q psy13868 33 AVVWYTDGSKTEA--GSGAGIHCVKPR-----VNISLPLGTYTGVYQAEVLAIRNCAEENINMGLSKREIYIFSDSQAAL 105 (128)
Q Consensus 33 ~i~IyTDGS~~~~--~~G~gv~~~~~~-----~~~~~~L~~~~sv~~AEl~AI~~AL~~~~~~~~~~~~i~I~SDS~sai 105 (128)
.++||||||+..+ ..|+|+++.+.. ...+..++ .+|++.||+.|++.||+++.+.+.. ++.|+|||+.++
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~a~~~~~~--~v~i~tDS~~vv 79 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIG-RATNNVAEYRGLIAGLDDAVKLGAT--EAAVLMDSKLVV 79 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEEE-EECHHHHHHHHHHHHHHHHHHHTCS--EEEEEESCHHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccCC-CCchHHHHHHHHHHHHHHHHHCCCc--eEEEEeChHHHH
Confidence 5899999999854 489999886542 23334444 7899999999999999999887654 499999999999
Q ss_pred HHhhCCC-CCchhhHHHHH
Q psy13868 106 RAIGNFQ-TKSKITWESTQ 123 (128)
Q Consensus 106 ~ai~~~~-~~s~~~~~~~~ 123 (128)
+.|.+.. .+++..+++.+
T Consensus 80 ~~i~~~~~~~~~~l~~~~~ 98 (141)
T 3hst_B 80 EQMSGRWKVKHPDLLKLYV 98 (141)
T ss_dssp HHHTTSSCCCSHHHHHHHH
T ss_pred HHHhCCcccCCHHHHHHHH
Confidence 9999864 55665565554
No 2
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.62 E-value=1.4e-15 Score=109.74 Aligned_cols=79 Identities=23% Similarity=0.329 Sum_probs=64.7
Q ss_pred cCCcEEEEeeCCccCCC-----cceEEEEecC-ceeEEeecCCCCcchHHHHHHHHHHHHHHHhcCCCCceEEEEeCcHH
Q psy13868 30 KKGAVVWYTDGSKTEAG-----SGAGIHCVKP-RVNISLPLGTYTGVYQAEVLAIRNCAEENINMGLSKREIYIFSDSQA 103 (128)
Q Consensus 30 ~~~~i~IyTDGS~~~~~-----~G~gv~~~~~-~~~~~~~L~~~~sv~~AEl~AI~~AL~~~~~~~~~~~~i~I~SDS~s 103 (128)
+.+.+.||||||+..++ .|+|+++.+. ....+.+++..+|++.||+.|++.||+++.+.+. +.+.|+|||++
T Consensus 4 ~~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~--~~v~i~tDS~~ 81 (154)
T 2qkb_A 4 MGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNI--NKLVLYTNSMF 81 (154)
T ss_dssp ETTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTC--CEEEEEESCHH
T ss_pred CCCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhCCC--ceEEEEECcHH
Confidence 46789999999997532 7999998653 2345666766789999999999999999987654 35999999999
Q ss_pred HHHHhhC
Q psy13868 104 ALRAIGN 110 (128)
Q Consensus 104 ai~ai~~ 110 (128)
+++.|.+
T Consensus 82 vi~~i~~ 88 (154)
T 2qkb_A 82 TINGITN 88 (154)
T ss_dssp HHHHHHT
T ss_pred HHhhhhh
Confidence 9999987
No 3
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.61 E-value=2.9e-15 Score=104.51 Aligned_cols=92 Identities=22% Similarity=0.220 Sum_probs=68.7
Q ss_pred CcEEEEeeCCccCC--CcceEEEEecCc--e--eEEeecCCCCcchHHHHHHHHHHHHHHHhcCCC--CceEEEEeCcHH
Q psy13868 32 GAVVWYTDGSKTEA--GSGAGIHCVKPR--V--NISLPLGTYTGVYQAEVLAIRNCAEENINMGLS--KREIYIFSDSQA 103 (128)
Q Consensus 32 ~~i~IyTDGS~~~~--~~G~gv~~~~~~--~--~~~~~L~~~~sv~~AEl~AI~~AL~~~~~~~~~--~~~i~I~SDS~s 103 (128)
+.++||||||+..+ ..|+|+++.++. . ..+..++ .+|++.||+.|++.||+++.+.+.. ..++.|+|||+.
T Consensus 2 ~~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~ 80 (140)
T 3u3g_D 2 NKIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIG-ETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSEL 80 (140)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEE-EECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHH
T ss_pred ceEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCC-CCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHH
Confidence 35899999999753 489999986532 2 3344444 5799999999999999999876543 126999999999
Q ss_pred HHHHhhCCCC-CchhhHHHHHh
Q psy13868 104 ALRAIGNFQT-KSKITWESTQA 124 (128)
Q Consensus 104 ai~ai~~~~~-~s~~~~~~~~~ 124 (128)
+++.+.+... +++..+++.+.
T Consensus 81 vi~~i~~~~~~~~~~l~~~~~~ 102 (140)
T 3u3g_D 81 IVRQMQGVYKVKEPTLKEKFAK 102 (140)
T ss_dssp HHHHHTTSSCCCCGGGHHHHHH
T ss_pred HHHHhCCCcccCCHHHHHHHHH
Confidence 9999998663 55555554443
No 4
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.53 E-value=6.7e-14 Score=99.85 Aligned_cols=89 Identities=19% Similarity=0.159 Sum_probs=64.8
Q ss_pred cEEEEeeCCcc-C--CCcce-EEEEecCc-e--eEEeecC---CCCcchHHHHHHHHHHHHHHHhcCCCCceEEEEeCcH
Q psy13868 33 AVVWYTDGSKT-E--AGSGA-GIHCVKPR-V--NISLPLG---TYTGVYQAEVLAIRNCAEENINMGLSKREIYIFSDSQ 102 (128)
Q Consensus 33 ~i~IyTDGS~~-~--~~~G~-gv~~~~~~-~--~~~~~L~---~~~sv~~AEl~AI~~AL~~~~~~~~~~~~i~I~SDS~ 102 (128)
+++||||||+. . ++.|+ |+++.+.. . ..+..++ ...|++.||+.|++.||+++.+.+..+ +.|+|||+
T Consensus 1 m~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~--v~i~tDS~ 78 (149)
T 2ehg_A 1 MIIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISS--PIIKGDSQ 78 (149)
T ss_dssp CCEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCS--CEEEESCH
T ss_pred CEEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCE--EEEEeChH
Confidence 46899999997 2 44786 88875432 2 1223333 378999999999999999998876554 99999999
Q ss_pred HHHHHhhCCCC-CchhhHHHHH
Q psy13868 103 AALRAIGNFQT-KSKITWESTQ 123 (128)
Q Consensus 103 sai~ai~~~~~-~s~~~~~~~~ 123 (128)
.+++.+.+... +++...++.|
T Consensus 79 ~vi~~i~~~w~~~~~~~~~l~~ 100 (149)
T 2ehg_A 79 LVIKQMNGEYKVKAKRIIPLYE 100 (149)
T ss_dssp HHHHHHTTSSCCCCTTHHHHHH
T ss_pred HHHHHHhCccccCCHHHHHHHH
Confidence 99999998743 3333334433
No 5
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.52 E-value=1.9e-14 Score=102.65 Aligned_cols=74 Identities=22% Similarity=0.186 Sum_probs=59.4
Q ss_pred CcEEEEeeCCccCCC--cceEEEEecCc--eeEEeecCCCCcchHHHHHHHHHHHHHHHhcCCCCceEEEEeCcHHHHHH
Q psy13868 32 GAVVWYTDGSKTEAG--SGAGIHCVKPR--VNISLPLGTYTGVYQAEVLAIRNCAEENINMGLSKREIYIFSDSQAALRA 107 (128)
Q Consensus 32 ~~i~IyTDGS~~~~~--~G~gv~~~~~~--~~~~~~L~~~~sv~~AEl~AI~~AL~~~~~~~~~~~~i~I~SDS~sai~a 107 (128)
+.+.||||||+..++ .|+|+++.... ...+..++ .+|++.||+.|++.||+++.+ .+.+.|+|||+++++.
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~~-~~Tnn~aEl~A~~~AL~~~~~----~~~v~I~tDS~~vi~~ 77 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYDP-ATTNNRMELMAAIKGLEALKE----PARVQLYSDSAYLVNA 77 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEE-EECHHHHHHHHHHHHHHTCSS----CCEEEEEESCHHHHHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCCC-CCcHHHHHHHHHHHHHHhcCc----cCcEEEEeChHHHHHH
Confidence 568999999998643 89999886543 23333443 678999999999999999865 2469999999999999
Q ss_pred hhC
Q psy13868 108 IGN 110 (128)
Q Consensus 108 i~~ 110 (128)
|.+
T Consensus 78 i~~ 80 (146)
T 3h08_A 78 MNE 80 (146)
T ss_dssp HHS
T ss_pred HHH
Confidence 988
No 6
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.52 E-value=1.5e-14 Score=104.06 Aligned_cols=84 Identities=15% Similarity=0.033 Sum_probs=64.9
Q ss_pred cCCcEEEEeeCCccCCCcceEEEEecCce--eEEe-ec--CC--CCcchHHHHHHHHHHHHHHHhcCCCCceEEEEeCcH
Q psy13868 30 KKGAVVWYTDGSKTEAGSGAGIHCVKPRV--NISL-PL--GT--YTGVYQAEVLAIRNCAEENINMGLSKREIYIFSDSQ 102 (128)
Q Consensus 30 ~~~~i~IyTDGS~~~~~~G~gv~~~~~~~--~~~~-~L--~~--~~sv~~AEl~AI~~AL~~~~~~~~~~~~i~I~SDS~ 102 (128)
+++.+.||||||+..+..|+|+++..... ..+. .+ +. .+|++.||+.|++.||+++.+.+. ++.|+|||+
T Consensus 3 ~~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~---~v~I~tDS~ 79 (147)
T 2kq2_A 3 DRTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV---KIRILHDYA 79 (147)
T ss_dssp TTSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC---CCCBSSCCS
T ss_pred CCCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC---eEEEEECcH
Confidence 57789999999999866999999854322 2333 23 22 368999999999999999887765 499999999
Q ss_pred HHHHHhhCCCCCch
Q psy13868 103 AALRAIGNFQTKSK 116 (128)
Q Consensus 103 sai~ai~~~~~~s~ 116 (128)
.+.+.+.+....+.
T Consensus 80 ~i~~w~~~~w~~~~ 93 (147)
T 2kq2_A 80 GIAFWATGEWKAKN 93 (147)
T ss_dssp THHHHTTSSSSCCH
T ss_pred HHHHHHhCCCccCC
Confidence 98888877655443
No 7
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.49 E-value=8.3e-14 Score=100.79 Aligned_cols=73 Identities=23% Similarity=0.144 Sum_probs=58.1
Q ss_pred cEEEEeeCCccCCC--cceEEEEecCc--eeEEeecCCCCcchHHHHHHHHHHHHHHHhcCCCCceEEEEeCcHHHHHHh
Q psy13868 33 AVVWYTDGSKTEAG--SGAGIHCVKPR--VNISLPLGTYTGVYQAEVLAIRNCAEENINMGLSKREIYIFSDSQAALRAI 108 (128)
Q Consensus 33 ~i~IyTDGS~~~~~--~G~gv~~~~~~--~~~~~~L~~~~sv~~AEl~AI~~AL~~~~~~~~~~~~i~I~SDS~sai~ai 108 (128)
.+.||||||+..++ .|+|+++.... ...+..+ ..+|++.||+.|++.||+++.+. +.+.|+|||+++++.|
T Consensus 4 ~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~~----~~v~I~tDS~~vi~~i 78 (155)
T 1jl1_A 4 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKEH----AEVILSTDSQYVRQGI 78 (155)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCSC----CEEEEEECCHHHHHHH
T ss_pred eEEEEEccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCcC----CcEEEEeCHHHHHHHH
Confidence 58999999998533 89999986433 2233334 36789999999999999998642 4699999999999999
Q ss_pred hC
Q psy13868 109 GN 110 (128)
Q Consensus 109 ~~ 110 (128)
.+
T Consensus 79 ~~ 80 (155)
T 1jl1_A 79 TQ 80 (155)
T ss_dssp HT
T ss_pred HH
Confidence 97
No 8
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.48 E-value=9.9e-14 Score=100.78 Aligned_cols=74 Identities=26% Similarity=0.140 Sum_probs=58.1
Q ss_pred CcEEEEeeCCccCC--CcceEEEEecCc--eeEEeecCCCCcchHHHHHHHHHHHHHHHhcCCCCceEEEEeCcHHHHHH
Q psy13868 32 GAVVWYTDGSKTEA--GSGAGIHCVKPR--VNISLPLGTYTGVYQAEVLAIRNCAEENINMGLSKREIYIFSDSQAALRA 107 (128)
Q Consensus 32 ~~i~IyTDGS~~~~--~~G~gv~~~~~~--~~~~~~L~~~~sv~~AEl~AI~~AL~~~~~~~~~~~~i~I~SDS~sai~a 107 (128)
..+.||||||+..+ ..|+|+++.... ...+..++ .+|++.||+.|++.||+++.+. +.+.|+|||+++++.
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~-~~tn~~aEl~A~~~AL~~~~~~----~~v~I~tDS~~vi~~ 79 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGFS-LTTNNRMELLAPIVALEALKEP----CKIILTSDSQYMRQG 79 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEEE-EECHHHHHHHHHHHHHHTCSSC----CEEEEEECCHHHHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCcC-CCccHHHHHHHHHHHHHHhccC----CeEEEEeCHHHHHHH
Confidence 46899999999853 389999885432 22333343 5789999999999999987532 569999999999999
Q ss_pred hhC
Q psy13868 108 IGN 110 (128)
Q Consensus 108 i~~ 110 (128)
|.+
T Consensus 80 i~~ 82 (158)
T 2e4l_A 80 IMT 82 (158)
T ss_dssp HHT
T ss_pred HHH
Confidence 988
No 9
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.48 E-value=2.6e-13 Score=99.95 Aligned_cols=77 Identities=22% Similarity=0.330 Sum_probs=58.6
Q ss_pred cccCCcEEEEeeCCccC--CCcceEEEEecC-ceeEEeecCCCCcchHHHHHHHHHHHHHHHhcCCCCceEEEEeCcHHH
Q psy13868 28 LLKKGAVVWYTDGSKTE--AGSGAGIHCVKP-RVNISLPLGTYTGVYQAEVLAIRNCAEENINMGLSKREIYIFSDSQAA 104 (128)
Q Consensus 28 ~~~~~~i~IyTDGS~~~--~~~G~gv~~~~~-~~~~~~~L~~~~sv~~AEl~AI~~AL~~~~~~~~~~~~i~I~SDS~sa 104 (128)
+++...+.||||||+.. +..|+|+++... .......++..+|++.||+.|+..||+++ . .+++.|+|||+++
T Consensus 18 P~~~~~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~-~----~~~v~I~tDS~~v 92 (165)
T 3p1g_A 18 PIPDADYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA-E----GKKLNVYTDSRYA 92 (165)
T ss_dssp CCTTCSEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT-B----TSEEEEEECCHHH
T ss_pred CCCCCCEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc-c----CceEEEEEchHHH
Confidence 34556799999999973 447888866432 22222246678899999999999999998 2 3469999999999
Q ss_pred HHHhh
Q psy13868 105 LRAIG 109 (128)
Q Consensus 105 i~ai~ 109 (128)
++.|-
T Consensus 93 i~~iw 97 (165)
T 3p1g_A 93 FATAH 97 (165)
T ss_dssp HHHHH
T ss_pred Hhhhh
Confidence 99984
No 10
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.43 E-value=1.8e-13 Score=100.36 Aligned_cols=74 Identities=18% Similarity=0.055 Sum_probs=57.8
Q ss_pred CcEEEEeeCCccCCC--cceEEEEecCc--eeEEeecCCCCcchHHHHHHHHHHHHHHHhcCCCCceEEEEeCcHHHHHH
Q psy13868 32 GAVVWYTDGSKTEAG--SGAGIHCVKPR--VNISLPLGTYTGVYQAEVLAIRNCAEENINMGLSKREIYIFSDSQAALRA 107 (128)
Q Consensus 32 ~~i~IyTDGS~~~~~--~G~gv~~~~~~--~~~~~~L~~~~sv~~AEl~AI~~AL~~~~~~~~~~~~i~I~SDS~sai~a 107 (128)
..+.||||||+..++ .|+|+++.... ...+..+ ..+|++.||+.|++.||+++.+. ..+.|+|||+++++.
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~Ai~~AL~~~~~~----~~v~I~tDS~~vi~~ 81 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGE-ACTTNNRMELKAAIEGLKALKEP----CEVDLYTDSHYLKKA 81 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEE-EEECHHHHHHHHHHHHHHSCCSC----CEEEEECCCHHHHHH
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCC-CCCcHHHHHHHHHHHHHHHhccC----CeEEEEeChHHHHHH
Confidence 578999999998543 89999985432 2222223 35789999999999999987543 359999999999999
Q ss_pred hhC
Q psy13868 108 IGN 110 (128)
Q Consensus 108 i~~ 110 (128)
|.+
T Consensus 82 i~~ 84 (166)
T 1ril_A 82 FTE 84 (166)
T ss_dssp HHS
T ss_pred Hhh
Confidence 998
No 11
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.43 E-value=4.3e-13 Score=97.11 Aligned_cols=74 Identities=30% Similarity=0.328 Sum_probs=58.7
Q ss_pred cCCcEEEEeeCCccCCC--cceEEEEecCceeEEeecCCCCcchHHHHHHHHHHHHHHHhcCCCCceEEEEeCcHHHHHH
Q psy13868 30 KKGAVVWYTDGSKTEAG--SGAGIHCVKPRVNISLPLGTYTGVYQAEVLAIRNCAEENINMGLSKREIYIFSDSQAALRA 107 (128)
Q Consensus 30 ~~~~i~IyTDGS~~~~~--~G~gv~~~~~~~~~~~~L~~~~sv~~AEl~AI~~AL~~~~~~~~~~~~i~I~SDS~sai~a 107 (128)
+.+.+.||||||+..++ .|+|+++.+... ....+ ..+|++.||+.|+..||+.+ .+++.|+|||+++++.
T Consensus 9 ~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~-~~~~~-~~~Tnn~aEl~A~i~AL~~~------~~~v~i~tDS~~v~~~ 80 (150)
T 3qio_A 9 IVGAETFYVDGAANRETKLGKAGYVTNRGRQ-KVVTL-TDTTNQKTELQAIYLALQDS------GLEVNIVTDSQYALGI 80 (150)
T ss_dssp CTTCEEEEEEEEECTTTCCEEEEEEETTSCE-EEEEE-SSCCHHHHHHHHHHHHHHHS------CSEEEEEESCHHHHHH
T ss_pred CCCCEEEEEccCCCCCCCCeEEEEEEEcCCE-EEEeC-CCCCHHHHHHHHHHHHHHhC------CCcEEEEeCcHHHHHH
Confidence 46789999999997433 888888865432 23344 47899999999999999984 2569999999999999
Q ss_pred hhCC
Q psy13868 108 IGNF 111 (128)
Q Consensus 108 i~~~ 111 (128)
|.+.
T Consensus 81 i~~w 84 (150)
T 3qio_A 81 ITQW 84 (150)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9874
No 12
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.42 E-value=3.4e-13 Score=97.32 Aligned_cols=80 Identities=15% Similarity=-0.056 Sum_probs=62.5
Q ss_pred cCCcEEEEeeCCccCC--CcceEEEEecCc--eeEEeecCCCCcchHHHHHHHHHHHHHHHhcCCCCceEEEEeCcHHHH
Q psy13868 30 KKGAVVWYTDGSKTEA--GSGAGIHCVKPR--VNISLPLGTYTGVYQAEVLAIRNCAEENINMGLSKREIYIFSDSQAAL 105 (128)
Q Consensus 30 ~~~~i~IyTDGS~~~~--~~G~gv~~~~~~--~~~~~~L~~~~sv~~AEl~AI~~AL~~~~~~~~~~~~i~I~SDS~sai 105 (128)
+.+.+.||||||+..+ ..|+|+++.... ...+..++ .+|++.||+.|++.||+++.+.+. .+.|+|||+.++
T Consensus 8 ~~~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~-~~TNN~aEl~A~i~aL~~~~~~~~---~v~i~tDS~~vi 83 (142)
T 1zbf_A 8 EIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIP-IGTNNMGEFLAIVHGLRYLKERNS---RKPIYSNSQTAI 83 (142)
T ss_dssp CCCSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEE-EECHHHHHHHHHHHHHHHHHHTTC---CCCEEESCHHHH
T ss_pred CCCeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccC-CcCcHHHHHHHHHHHHHHHHhCCC---eEEEEEehHHHH
Confidence 3567899999999743 389999985321 22222333 578999999999999999988765 499999999999
Q ss_pred HHhhCCCC
Q psy13868 106 RAIGNFQT 113 (128)
Q Consensus 106 ~ai~~~~~ 113 (128)
+.+++...
T Consensus 84 ~w~~~~~~ 91 (142)
T 1zbf_A 84 KWVKDKKA 91 (142)
T ss_dssp HHHHHTCC
T ss_pred HHHHcCCc
Confidence 99998873
No 13
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.37 E-value=4e-13 Score=96.47 Aligned_cols=79 Identities=15% Similarity=-0.057 Sum_probs=58.4
Q ss_pred CCcEEEEeeCCccCCC--cceEEEEecC--ceeEEeecCCCCcchHHHHHHHHHHHHHHHhcCCCCceEEEEeCcHHHHH
Q psy13868 31 KGAVVWYTDGSKTEAG--SGAGIHCVKP--RVNISLPLGTYTGVYQAEVLAIRNCAEENINMGLSKREIYIFSDSQAALR 106 (128)
Q Consensus 31 ~~~i~IyTDGS~~~~~--~G~gv~~~~~--~~~~~~~L~~~~sv~~AEl~AI~~AL~~~~~~~~~~~~i~I~SDS~sai~ 106 (128)
+....||||||+..+. .|.|.|+... ....+..++ .+|++.||++|++.||+.+.+.+.. +.|+|||+++++
T Consensus 3 p~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~~-~tTNN~aEl~A~i~aL~~l~~~~~~---v~i~tDSqyVi~ 78 (134)
T 4htu_A 3 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIP-IGTNNMGEFLAIVHGLRYLKERNSR---KPIYSNSQTAIK 78 (134)
T ss_dssp CCSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEEE-EECHHHHHHHHHHHHHHHHHHTTCC---CCEEESCHHHHH
T ss_pred ccceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCCC-CCchHHHHHHHHHHHHHHHHhCCCC---EEEEcchHHHHH
Confidence 3456799999997433 7885555332 223333444 6899999999999999999876532 799999999999
Q ss_pred HhhCCCC
Q psy13868 107 AIGNFQT 113 (128)
Q Consensus 107 ai~~~~~ 113 (128)
.|.+...
T Consensus 79 wi~~~~~ 85 (134)
T 4htu_A 79 WVKDKKA 85 (134)
T ss_dssp HHHHTCC
T ss_pred HHHcCCc
Confidence 9986543
No 14
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.36 E-value=3.3e-12 Score=94.12 Aligned_cols=78 Identities=21% Similarity=0.291 Sum_probs=57.2
Q ss_pred cCCcEEEEeeCCccCC--C-----cceEEEEec--C--ceeEEeecC-CCCcchHHHHHHHHHHHHHHHhcCCCCceEEE
Q psy13868 30 KKGAVVWYTDGSKTEA--G-----SGAGIHCVK--P--RVNISLPLG-TYTGVYQAEVLAIRNCAEENINMGLSKREIYI 97 (128)
Q Consensus 30 ~~~~i~IyTDGS~~~~--~-----~G~gv~~~~--~--~~~~~~~L~-~~~sv~~AEl~AI~~AL~~~~~~~~~~~~i~I 97 (128)
....+.|||||||..+ + .|+|||+.. + .....+.++ ...+.+.||+.|+..||+.+++.+ .+|.|
T Consensus 4 ~~~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~~---~~v~I 80 (165)
T 2lsn_A 4 GQYEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKIP---GPVLV 80 (165)
T ss_dssp CCCSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHSS---SCEEE
T ss_pred CCceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcCC---CeEEE
Confidence 4566899999999742 2 799998742 2 223333333 456788899999999998887654 24999
Q ss_pred EeCcHHHHHHhhC
Q psy13868 98 FSDSQAALRAIGN 110 (128)
Q Consensus 98 ~SDS~sai~ai~~ 110 (128)
+|||+++++.|..
T Consensus 81 ~TDS~Yvi~~it~ 93 (165)
T 2lsn_A 81 ITDSFYVAESANK 93 (165)
T ss_dssp EESCHHHHHHHHT
T ss_pred EeChHHHHhhhhh
Confidence 9999999999964
No 15
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.24 E-value=2.4e-11 Score=103.05 Aligned_cols=86 Identities=30% Similarity=0.333 Sum_probs=64.4
Q ss_pred CCcEEEEeeCCccCC-C-cceEEEEecCceeEEeecCCCCcchHHHHHHHHHHHHHHHhcCCCCceEEEEeCcHHHHHHh
Q psy13868 31 KGAVVWYTDGSKTEA-G-SGAGIHCVKPRVNISLPLGTYTGVYQAEVLAIRNCAEENINMGLSKREIYIFSDSQAALRAI 108 (128)
Q Consensus 31 ~~~i~IyTDGS~~~~-~-~G~gv~~~~~~~~~~~~L~~~~sv~~AEl~AI~~AL~~~~~~~~~~~~i~I~SDS~sai~ai 108 (128)
.+.+.||||||+..+ + .|+|+++.... .....+ ..+||+.||+.|++.||+.+ .+.+.|+|||+++++.|
T Consensus 437 ~~~~~iytDGs~~~n~g~~g~g~v~~~~~-~~~~~~-~~~TNn~aEl~Ai~~aL~~~------~~~v~I~tDS~~vi~~i 508 (557)
T 2zd1_A 437 VGAETFYVDGAANRETKLGKAGYVTNKGR-QKVVPL-TNTTNQKTELQAIYLALQDS------GLEVNIVTDSQYALGII 508 (557)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEEETTSC-EEEEEE-CSCCHHHHHHHHHHHHHHHS------CSEEEEEECCHHHHHHH
T ss_pred CCCEEEEEccCCCCCCCceEEEEEEECCc-EEEecC-CCCCHHHHHHHHHHHHHHhC------CCcEEEEeChHHHHHHH
Confidence 567999999999743 3 78888875432 222333 36899999999999999988 24599999999999999
Q ss_pred hCCCCC--chhhHHHHHh
Q psy13868 109 GNFQTK--SKITWESTQA 124 (128)
Q Consensus 109 ~~~~~~--s~~~~~~~~~ 124 (128)
.+...+ .++..++.+.
T Consensus 509 ~~~~~~~~~~l~~~~~~~ 526 (557)
T 2zd1_A 509 QAQPDKSESELVNQIIEQ 526 (557)
T ss_dssp TTCCSEESSHHHHHHHHH
T ss_pred hcCCccCCHHHHHHHHHH
Confidence 997766 2344444443
No 16
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.17 E-value=1.2e-10 Score=98.71 Aligned_cols=86 Identities=26% Similarity=0.268 Sum_probs=62.8
Q ss_pred CCcEEEEeeCCccCCC--cceEEEEecCceeEEeecCCCCcchHHHHHHHHHHHHHHHhcCCCCceEEEEeCcHHHHHHh
Q psy13868 31 KGAVVWYTDGSKTEAG--SGAGIHCVKPRVNISLPLGTYTGVYQAEVLAIRNCAEENINMGLSKREIYIFSDSQAALRAI 108 (128)
Q Consensus 31 ~~~i~IyTDGS~~~~~--~G~gv~~~~~~~~~~~~L~~~~sv~~AEl~AI~~AL~~~~~~~~~~~~i~I~SDS~sai~ai 108 (128)
.+.+.||||||+..++ .|+|+++.... ..+..++ .+|++.||+.|++.||+. + .+.+.|+|||+++++.|
T Consensus 434 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~-~~~~~~~-~~TNn~aEl~A~i~aL~~----~--~~~v~I~tDS~~v~~~i 505 (555)
T 1mu2_A 434 PGAETFYTDGSCNRQSKEGKAGYVTDRGK-DKVKKLE-QTTNQQAELEAFAMALTD----S--GPKVNIIVDSQYVMGIV 505 (555)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSC-EEEEEES-SCCHHHHHHHHHHHHHHT----S--CSEEEEEESCHHHHHHH
T ss_pred CCceEEEEcccccCCCCCceEEEEEEeCC-EeeccCC-CCCHHHHHHHHHHHHHHc----C--CCeEEEEEehHHHHHHH
Confidence 5679999999997543 78888885433 2233343 678999999999999997 2 34699999999999999
Q ss_pred hCCC--CCchhhHHHHHh
Q psy13868 109 GNFQ--TKSKITWESTQA 124 (128)
Q Consensus 109 ~~~~--~~s~~~~~~~~~ 124 (128)
++.. ...++..++.+.
T Consensus 506 ~~~~~~~~~~l~~~~~~~ 523 (555)
T 1mu2_A 506 ASQPTESESKIVNQIIEE 523 (555)
T ss_dssp HTCCSEESCHHHHHHHHH
T ss_pred hcccccccHHHHHHHHHH
Confidence 9754 223344444433
No 17
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=94.47 E-value=0.01 Score=48.69 Aligned_cols=78 Identities=13% Similarity=0.055 Sum_probs=49.6
Q ss_pred cCCcEEEEeeCCccCCCcceEEEEec------CceeEEeecC---CCCcchHHHHHHHHHHHHHHHhcCCCCceEEEEeC
Q psy13868 30 KKGAVVWYTDGSKTEAGSGAGIHCVK------PRVNISLPLG---TYTGVYQAEVLAIRNCAEENINMGLSKREIYIFSD 100 (128)
Q Consensus 30 ~~~~i~IyTDGS~~~~~~G~gv~~~~------~~~~~~~~L~---~~~sv~~AEl~AI~~AL~~~~~~~~~~~~i~I~SD 100 (128)
+...+.+|||+|. .++| ||+.-. +....+-++. ...+++..|++||..|++.....-. .+.+.|+||
T Consensus 343 ~~~~~~l~~DAS~--~~~g-avL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~-g~~~~v~tD 418 (455)
T 1rw3_A 343 LTKPFELFVDEKQ--GYAK-GVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTM-GQPLVIKAP 418 (455)
T ss_dssp SCCTTSCEEEEEE--CSSS-BEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGC-SSCEEEECS
T ss_pred CCCcEEEEEeccC--Ccce-eEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcC-CCcEEEEec
Confidence 3567789999985 3344 344321 1112222332 3467889999999999998865422 245999999
Q ss_pred cHHHHHHhhCCC
Q psy13868 101 SQAALRAIGNFQ 112 (128)
Q Consensus 101 S~sai~ai~~~~ 112 (128)
+. ++..+.+..
T Consensus 419 h~-~~~~l~~~~ 429 (455)
T 1rw3_A 419 HA-VEALVKQPP 429 (455)
T ss_dssp SC-TTTTSSSTT
T ss_pred Ch-HHHHhCCCc
Confidence 97 666666544
No 18
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=90.13 E-value=1 Score=36.62 Aligned_cols=77 Identities=4% Similarity=-0.144 Sum_probs=47.1
Q ss_pred cCCcEEEEeeCCccCCCcceEEEEecC--ceeE--EeecCCCCcchHHHHHH-HHHHHHHHHhc--CCCCceEEEEeCcH
Q psy13868 30 KKGAVVWYTDGSKTEAGSGAGIHCVKP--RVNI--SLPLGTYTGVYQAEVLA-IRNCAEENINM--GLSKREIYIFSDSQ 102 (128)
Q Consensus 30 ~~~~i~IyTDGS~~~~~~G~gv~~~~~--~~~~--~~~L~~~~sv~~AEl~A-I~~AL~~~~~~--~~~~~~i~I~SDS~ 102 (128)
+...+.++||+|.. + .+|.+..++ .... ++.-......+.-|++| |..||+..... |.....++++||.+
T Consensus 321 ~~~~~~l~~das~~--g-~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td~~ 397 (428)
T 2zd1_B 321 PSKDLIAEIQKQGQ--G-QWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKET 397 (428)
T ss_dssp TTSCCEEEEEEEET--T-EEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCHHH
T ss_pred CCCCEEEEEecCCC--C-cEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCccHHH
Confidence 57889999999952 2 223333322 2222 23322344556777777 99999976432 54445678899998
Q ss_pred HHHHHhh
Q psy13868 103 AALRAIG 109 (128)
Q Consensus 103 sai~ai~ 109 (128)
..-.-..
T Consensus 398 ~~~~~~~ 404 (428)
T 2zd1_B 398 WETWWTE 404 (428)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7654443
No 19
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=52.63 E-value=45 Score=27.65 Aligned_cols=76 Identities=4% Similarity=-0.111 Sum_probs=44.8
Q ss_pred cCCcEEEEeeCCccCCCcceEEEEec--Cce--eEEeecCCCCcchHHHHHH-HHHHHHHHHhc--CCCCceEEE-EeCc
Q psy13868 30 KKGAVVWYTDGSKTEAGSGAGIHCVK--PRV--NISLPLGTYTGVYQAEVLA-IRNCAEENINM--GLSKREIYI-FSDS 101 (128)
Q Consensus 30 ~~~~i~IyTDGS~~~~~~G~gv~~~~--~~~--~~~~~L~~~~sv~~AEl~A-I~~AL~~~~~~--~~~~~~i~I-~SDS 101 (128)
+...+.+|||+|.. +. +|.+..+ ... ...+.-......+.-|++| +..+|+..... |... .+.+ ++|+
T Consensus 323 ~~~~~~l~~das~~--g~-~g~vl~q~~~~~~~~~~~~~~~~y~~~e~e~la~vv~~l~~~~~~l~g~~p-~~~vp~~~~ 398 (557)
T 2zd1_A 323 PSKDLIAEIQKQGQ--GQ-WTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTP-KFKLPIQKE 398 (557)
T ss_dssp TTSCCEEEEEEEET--TE-EEEEEEEETTEEEEEEEEECCSCSEECHHHHHHHHHHHHHHHHHHHHSSCC-EEEESBCHH
T ss_pred CCCCEEEEEecCCC--Cc-EEEEEecCCCceeeeeecccccccCCChHHHHHHHHHHhhhhheEEeCCCC-CEECCCcHH
Confidence 57789999999863 21 2333322 211 2223333455677889999 99999875332 4332 3555 7998
Q ss_pred HHHHHHhh
Q psy13868 102 QAALRAIG 109 (128)
Q Consensus 102 ~sai~ai~ 109 (128)
+.......
T Consensus 399 ~~~~~~~~ 406 (557)
T 2zd1_A 399 TWETWWTE 406 (557)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 86555443
No 20
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=51.70 E-value=42 Score=22.76 Aligned_cols=54 Identities=13% Similarity=0.093 Sum_probs=32.9
Q ss_pred CCcceEEEEecCceeEEeecCCCCcchHHHHHHHHHHHHHHHhcCCCCceEEEEeCc
Q psy13868 45 AGSGAGIHCVKPRVNISLPLGTYTGVYQAEVLAIRNCAEENINMGLSKREIYIFSDS 101 (128)
Q Consensus 45 ~~~G~gv~~~~~~~~~~~~L~~~~sv~~AEl~AI~~AL~~~~~~~~~~~~i~I~SDS 101 (128)
-.+|++++..+.++.....+..+..-..||..||..|... ....-+.+++++|.
T Consensus 27 f~VGAal~~~dG~i~~G~NvE~~~~t~cAE~~Ai~~A~~~---G~~~~~~i~vv~~~ 80 (130)
T 2z3g_A 27 YSVASAALSSDGRIFTGVNVYHFTGGPCAELVVLGTAAAA---AAGNLTCIVAIGNE 80 (130)
T ss_dssp SCEEEEEEETTSCEEEEECCCCTTTCCCHHHHHHHHHHHT---TCCCEEEEEEEETT
T ss_pred CCEEEEEEecCCeEEEEeccccCCcccCHHHHHHHHHHHc---CCCceEEEEEEECC
Confidence 3588888876654433333322222457999999999873 22234457888874
No 21
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=44.00 E-value=71 Score=22.15 Aligned_cols=54 Identities=26% Similarity=0.099 Sum_probs=33.5
Q ss_pred CCcceEEEEecCceeEEeecCC--CCcchHHHHHHHHHHHHHHHhcCCCCceEEEEeCc
Q psy13868 45 AGSGAGIHCVKPRVNISLPLGT--YTGVYQAEVLAIRNCAEENINMGLSKREIYIFSDS 101 (128)
Q Consensus 45 ~~~G~gv~~~~~~~~~~~~L~~--~~sv~~AEl~AI~~AL~~~~~~~~~~~~i~I~SDS 101 (128)
..+|++++..+.++........ +..-..||..||..|... ....-+.+.|++|.
T Consensus 36 f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~---G~~~l~~i~v~~~~ 91 (146)
T 2fr5_A 36 FPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE---GYKDFRAIAISSDL 91 (146)
T ss_dssp CCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT---TCCCEEEEEEEESC
T ss_pred CCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC---CCCceEEEEEEeCC
Confidence 4588888876655444333321 112356999999999863 22234568888873
No 22
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=34.57 E-value=50 Score=23.46 Aligned_cols=52 Identities=13% Similarity=0.081 Sum_probs=30.6
Q ss_pred CcceEEEEecCceeEEeecCCCCcchHHHHHHHHHHHHHHHhcCCCCceEEEEeC
Q psy13868 46 GSGAGIHCVKPRVNISLPLGTYTGVYQAEVLAIRNCAEENINMGLSKREIYIFSD 100 (128)
Q Consensus 46 ~~G~gv~~~~~~~~~~~~L~~~~sv~~AEl~AI~~AL~~~~~~~~~~~~i~I~SD 100 (128)
++|+++...+.++.....+..+..-..||..||..|+. +....-+.+++.+|
T Consensus 52 ~VGAAll~~dG~i~tG~NVEn~~~~lCAEr~Ai~~Avs---~G~~~~~ai~vv~~ 103 (158)
T 3oj6_A 52 SVASAAISDDGRVFSGVNVYHFNGGPCAELVVLGVAAA---AGATKLTHIVAIAN 103 (158)
T ss_dssp CEEEEEEETTSCEEEEECCCCTTTCCCHHHHHHHHHHH---TTCCCEEEEEEEET
T ss_pred cEEEEEEeCCCCEEEEEccccCCccccHHHHHHHHHHH---hCCCceEEEEEEeC
Confidence 58999888766544433332222234799999999985 22222233555555
No 23
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=28.16 E-value=1.3e+02 Score=20.66 Aligned_cols=53 Identities=21% Similarity=0.122 Sum_probs=33.2
Q ss_pred CcceEEEEecCceeEEeecC--CCCcchHHHHHHHHHHHHHHHhcCCCCceEEEEeCc
Q psy13868 46 GSGAGIHCVKPRVNISLPLG--TYTGVYQAEVLAIRNCAEENINMGLSKREIYIFSDS 101 (128)
Q Consensus 46 ~~G~gv~~~~~~~~~~~~L~--~~~sv~~AEl~AI~~AL~~~~~~~~~~~~i~I~SDS 101 (128)
++|++++..+.++.....+. .+..-..||..||..|... ....-+.|.|.+|.
T Consensus 34 ~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~---G~~~~~aiav~~~~ 88 (141)
T 2d30_A 34 QVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSE---GDKEFVAIAIVADT 88 (141)
T ss_dssp CEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHT---TCCCEEEEEEEESC
T ss_pred cEEEEEEeCCCCEEEeeccccCCCCcccCHHHHHHHHHHHC---CCCceEEEEEEeCC
Confidence 58888887665444433332 1222356999999999863 22334568888885
No 24
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=26.55 E-value=1.5e+02 Score=20.01 Aligned_cols=53 Identities=17% Similarity=0.143 Sum_probs=31.9
Q ss_pred CcceEEEEecCceeEEeecC--CCCcchHHHHHHHHHHHHHHHhcCCCCceEEEEeCc
Q psy13868 46 GSGAGIHCVKPRVNISLPLG--TYTGVYQAEVLAIRNCAEENINMGLSKREIYIFSDS 101 (128)
Q Consensus 46 ~~G~gv~~~~~~~~~~~~L~--~~~sv~~AEl~AI~~AL~~~~~~~~~~~~i~I~SDS 101 (128)
.+|++++..+.++....... .+..-..||..||..|... ....-+.+.+++|.
T Consensus 25 ~VGAal~~~dG~i~~G~Nvena~~~~t~cAE~~Ai~~A~~~---G~~~~~~~~l~~~~ 79 (136)
T 1uwz_A 25 QVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSE---GDTEFQMLAVAADT 79 (136)
T ss_dssp CEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHH---TCCCEEEEEEEESC
T ss_pred CEEEEEEeCCCeEEEEeCcccCCCCCccCHHHHHHHHHHHC---CCCCeEEEEEEeCC
Confidence 47888777554444333332 1222356999999999874 22234568888873
No 25
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=24.21 E-value=1.9e+02 Score=20.25 Aligned_cols=53 Identities=13% Similarity=-0.027 Sum_probs=32.4
Q ss_pred CcceEEEEecCceeEEeecCC--CCcchHHHHHHHHHHHHHHHhcCCCCceEEEEeCc
Q psy13868 46 GSGAGIHCVKPRVNISLPLGT--YTGVYQAEVLAIRNCAEENINMGLSKREIYIFSDS 101 (128)
Q Consensus 46 ~~G~gv~~~~~~~~~~~~L~~--~~sv~~AEl~AI~~AL~~~~~~~~~~~~i~I~SDS 101 (128)
++|+++...+.++..-..+.+ +..-..||..||..|+.. ....-+.+.|.+|.
T Consensus 47 ~VGAAll~~dG~i~tG~NvEnasy~~t~CAEr~Ai~~Avs~---G~~~i~aiavv~~~ 101 (150)
T 3mpz_A 47 PVGAAALVDDGRTVTGCNVENVSYGLGLCAECAVVCALHSG---GGGRLVALSCVGPD 101 (150)
T ss_dssp CCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT---TCCCEEEEEEECTT
T ss_pred CEEEEEEeCCCCEEEEEecccccCCccccHHHHHHHHHHHc---CCCceEEEEEEcCC
Confidence 589998887665444333321 112246999999999873 22233457777763
No 26
>2grg_A Hypothetical protein; YNR034W-AP; helix/beta strand protein, structural genomics, PSI, protein structure initiative; NMR {Saccharomyces cerevisiae} SCOP: d.110.10.1
Probab=22.96 E-value=45 Score=22.71 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=14.2
Q ss_pred cCCcEEEEeeCCccCCC
Q psy13868 30 KKGAVVWYTDGSKTEAG 46 (128)
Q Consensus 30 ~~~~i~IyTDGS~~~~~ 46 (128)
...++.+||+++|.+.|
T Consensus 95 dGkTlvvYT~~nk~~e~ 111 (120)
T 2grg_A 95 AGHFIVYFTPKNKNREG 111 (120)
T ss_dssp TTEEEEEEESCCCSCCC
T ss_pred CCcEEEEEccCCcCCcc
Confidence 67889999999998655
No 27
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=22.95 E-value=92 Score=23.60 Aligned_cols=37 Identities=8% Similarity=0.241 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhcCC-CCceEEEEeCcHHHHHHhhCC
Q psy13868 75 VLAIRNCAEENINMGL-SKREIYIFSDSQAALRAIGNF 111 (128)
Q Consensus 75 l~AI~~AL~~~~~~~~-~~~~i~I~SDS~sai~ai~~~ 111 (128)
+--+..|++....... ..+.+.|+||+..+++.+++.
T Consensus 198 l~~~~~~i~~~~~~~~~~~~~vfvaSDd~~~~~~lk~~ 235 (330)
T 2hhc_A 198 LHQVCMAIRKAKALSYPKPVKVFLCTDSAQVLDQVSGL 235 (330)
T ss_dssp HHHHHHHHHHHHTSCCSSCEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcCceEEEEEeCCHHHHHHHHHH
Confidence 3345666666654422 245799999999999888764
Done!