Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>psy13868
MAVEENFDNPVNVVIETAGNWGVKETQLLKKGAVVWYTDGSKTEAGSGAGIHCVKPRVNI
SLPLGTYTGVYQAEVLAIRNCAEENINMGLSKREIYIFSDSQAALRAIGNFQTKSKITWE
STQAICGK

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy13868
        (128 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TIGR_CMR|BA_1623 - symbol:BA_1623 "RNase H" species:19809...   106  4.3e-06   1


>TIGR_CMR|BA_1623 [details] [associations]
            symbol:BA_1623 "RNase H" species:198094 "Bacillus anthracis
            str. Ames" [GO:0004523 "ribonuclease H activity" evidence=ISS]
            [GO:0006401 "RNA catabolic process" evidence=ISS]
            InterPro:IPR002156 InterPro:IPR012337 PROSITE:PS50879 EMBL:AE016879
            EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
            SUPFAM:SSF53098 GO:GO:0004523 KO:K03469 HSSP:P00647
            HOGENOM:HOG000040466 RefSeq:NP_844070.1 RefSeq:YP_018257.1
            RefSeq:YP_027774.1 ProteinModelPortal:Q81SM5 DNASU:1087188
            EnsemblBacteria:EBBACT00000013087 EnsemblBacteria:EBBACT00000014495
            EnsemblBacteria:EBBACT00000020813 GeneID:1087188 GeneID:2815012
            GeneID:2851527 KEGG:ban:BA_1623 KEGG:bar:GBAA_1623 KEGG:bat:BAS1507
            OMA:NTDHERW ProtClustDB:PRK13907
            BioCyc:BANT260799:GJAJ-1579-MONOMER
            BioCyc:BANT261594:GJ7F-1644-MONOMER Uniprot:Q81SM5
        Length = 128

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 35/88 (39%), Positives = 48/88 (54%)

Query:    37 YTDG-SKTEAG-SGAGIHC--VKPRVNISLPLGT---YTGVYQAEVLAIRNCAEENINMG 89
             Y DG SK   G SGAG+    V+P V +SLPLGT   +   Y A + A++ C E N N+ 
Sbjct:     5 YIDGASKGNPGPSGAGVFIKGVQPAVQLSLPLGTMSNHEAEYHALLAALKYCTEHNYNI- 63

Query:    90 LSKREIYIFSDSQAALRAIGNFQTKSKI 117
             +S R     +DSQ   RA+     K+K+
Sbjct:    64 VSFR-----TDSQLVERAVEKEYAKNKM 86


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.131   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      128       128   0.00091  102 3  11 23  0.43    31
                                                     29  0.41    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  579 (62 KB)
  Total size of DFA:  137 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:05
  No. of threads or processors used:  24
  Search cpu time:  11.80u 0.08s 11.88t   Elapsed:  00:00:15
  Total cpu time:  11.80u 0.08s 11.88t   Elapsed:  00:00:20
  Start:  Thu Aug 15 13:46:53 2013   End:  Thu Aug 15 13:47:13 2013

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