Query psy13875
Match_columns 105
No_of_seqs 149 out of 1070
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 22:38:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13875.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13875hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0450 AhpC Peroxiredoxin [Po 99.9 1.9E-26 4.1E-31 163.7 9.6 96 4-100 77-172 (194)
2 KOG0852|consensus 99.9 3.9E-24 8.4E-29 149.9 8.2 95 5-100 78-172 (196)
3 PRK10382 alkyl hydroperoxide r 99.9 1.5E-21 3.2E-26 138.7 9.9 93 4-100 75-168 (187)
4 PRK15000 peroxidase; Provision 99.9 1.6E-21 3.5E-26 139.6 10.0 95 5-100 79-173 (200)
5 PRK13191 putative peroxiredoxi 99.8 6.4E-21 1.4E-25 137.9 9.8 94 5-100 78-172 (215)
6 PTZ00137 2-Cys peroxiredoxin; 99.8 1.5E-20 3.3E-25 139.6 9.9 94 5-100 143-236 (261)
7 PRK13190 putative peroxiredoxi 99.8 1.2E-19 2.5E-24 129.9 9.7 94 5-100 72-165 (202)
8 PRK13189 peroxiredoxin; Provis 99.8 1.6E-19 3.4E-24 131.1 10.3 94 5-100 80-174 (222)
9 PRK13599 putative peroxiredoxi 99.8 2.8E-19 6.1E-24 129.4 10.3 95 5-101 73-168 (215)
10 cd03016 PRX_1cys Peroxiredoxin 99.8 1.1E-18 2.4E-23 124.8 10.1 94 5-100 70-165 (203)
11 PTZ00253 tryparedoxin peroxida 99.8 2.2E-18 4.8E-23 122.7 9.5 95 5-100 81-175 (199)
12 COG1225 Bcp Peroxiredoxin [Pos 99.8 2.3E-18 5E-23 119.5 8.7 76 5-89 75-156 (157)
13 TIGR03137 AhpC peroxiredoxin. 99.8 5.1E-18 1.1E-22 119.9 9.6 92 5-100 76-168 (187)
14 KOG0854|consensus 99.7 4.5E-17 9.7E-22 114.9 8.0 95 5-100 77-179 (224)
15 cd03015 PRX_Typ2cys Peroxiredo 99.7 2.1E-16 4.5E-21 109.9 10.5 94 6-100 75-168 (173)
16 PRK00522 tpx lipid hydroperoxi 99.5 1.9E-13 4.2E-18 94.9 8.8 75 5-87 87-167 (167)
17 cd03013 PRX5_like Peroxiredoxi 99.5 1.9E-13 4.1E-18 94.1 7.0 63 4-75 75-144 (155)
18 cd03014 PRX_Atyp2cys Peroxired 99.4 4.7E-12 1E-16 84.8 7.9 71 5-83 69-142 (143)
19 cd03018 PRX_AhpE_like Peroxire 99.3 2.6E-11 5.6E-16 81.4 8.0 75 5-87 73-149 (149)
20 PRK09437 bcp thioredoxin-depen 99.2 1.6E-10 3.4E-15 78.5 8.1 73 5-86 75-153 (154)
21 cd03017 PRX_BCP Peroxiredoxin 99.2 1.8E-10 3.9E-15 76.4 7.5 70 5-83 68-140 (140)
22 cd02971 PRX_family Peroxiredox 99.1 8.9E-10 1.9E-14 72.9 7.5 68 5-79 67-137 (140)
23 cd03012 TlpA_like_DipZ_like Tl 99.0 1.3E-09 2.7E-14 71.9 6.5 53 5-71 73-125 (126)
24 cd02970 PRX_like2 Peroxiredoxi 99.0 1.2E-09 2.6E-14 72.8 6.4 57 6-70 69-148 (149)
25 KOG0855|consensus 99.0 1.8E-09 4E-14 76.0 7.5 75 5-87 135-210 (211)
26 PF00578 AhpC-TSA: AhpC/TSA fa 99.0 1.6E-09 3.4E-14 70.3 6.6 55 5-67 70-124 (124)
27 COG2077 Tpx Peroxiredoxin [Pos 99.0 9.7E-10 2.1E-14 75.8 5.0 61 3-70 85-149 (158)
28 PRK15412 thiol:disulfide inter 98.9 1.5E-08 3.2E-13 71.3 8.4 66 5-88 109-175 (185)
29 PF08534 Redoxin: Redoxin; In 98.8 1.3E-08 2.9E-13 68.1 6.8 58 8-73 76-136 (146)
30 TIGR00385 dsbE periplasmic pro 98.8 2.3E-08 4.9E-13 69.6 7.9 64 6-87 105-169 (173)
31 cd02969 PRX_like1 Peroxiredoxi 98.8 4.3E-08 9.3E-13 67.7 8.9 74 5-92 77-155 (171)
32 TIGR01626 ytfJ_HI0045 conserve 98.8 1.9E-08 4E-13 71.6 6.3 58 24-88 121-182 (184)
33 PRK03147 thiol-disulfide oxido 98.8 7.4E-08 1.6E-12 66.0 8.5 65 6-88 107-171 (173)
34 PLN02412 probable glutathione 98.7 4E-08 8.6E-13 68.2 6.8 72 6-89 83-164 (167)
35 TIGR02540 gpx7 putative glutat 98.7 3.4E-08 7.4E-13 67.2 5.6 73 5-88 74-152 (153)
36 cd03010 TlpA_like_DsbE TlpA-li 98.6 1.2E-07 2.7E-12 62.1 6.6 55 5-73 67-122 (127)
37 cd00340 GSH_Peroxidase Glutath 98.6 5.1E-08 1.1E-12 66.3 4.6 61 5-72 73-143 (152)
38 cd03011 TlpA_like_ScsD_MtbDsbE 98.5 5.4E-07 1.2E-11 58.5 7.4 53 5-72 61-113 (123)
39 TIGR02661 MauD methylamine deh 98.5 4.6E-07 9.9E-12 64.1 6.0 65 5-86 115-179 (189)
40 PTZ00056 glutathione peroxidas 98.4 1.3E-06 2.9E-11 62.4 7.4 73 5-89 91-178 (199)
41 cd02968 SCO SCO (an acronym fo 98.4 1.3E-06 2.7E-11 57.9 5.9 57 5-69 74-141 (142)
42 cd02966 TlpA_like_family TlpA- 98.3 2.1E-06 4.6E-11 53.4 6.2 51 5-69 65-115 (116)
43 PLN02399 phospholipid hydroper 98.3 1.6E-06 3.4E-11 63.9 6.4 72 6-89 152-234 (236)
44 PTZ00256 glutathione peroxidas 98.3 1.4E-06 3E-11 61.3 5.5 61 24-88 105-180 (183)
45 cd02967 mauD Methylamine utili 98.1 1.1E-05 2.3E-10 51.6 5.5 48 5-68 64-112 (114)
46 PRK14018 trifunctional thiored 98.0 2.7E-05 6E-10 63.1 7.7 51 26-86 120-170 (521)
47 PRK13728 conjugal transfer pro 97.9 6.9E-05 1.5E-09 53.3 7.1 60 24-91 112-173 (181)
48 cd03008 TryX_like_RdCVF Trypar 97.8 4.4E-05 9.6E-10 52.4 4.6 49 6-68 78-129 (146)
49 PLN02919 haloacid dehalogenase 97.7 0.00014 3E-09 63.2 8.2 54 24-87 481-534 (1057)
50 cd03009 TryX_like_TryX_NRX Try 97.2 0.0004 8.7E-09 45.5 3.3 39 24-69 79-117 (131)
51 PF13911 AhpC-TSA_2: AhpC/TSA 97.2 0.0019 4.1E-08 41.7 6.4 56 7-70 26-113 (115)
52 TIGR02738 TrbB type-F conjugat 96.9 0.0034 7.3E-08 43.3 5.7 33 51-87 118-151 (153)
53 PF09695 YtfJ_HI0045: Bacteria 96.8 0.0019 4.1E-08 45.1 4.1 57 24-86 101-158 (160)
54 cd02964 TryX_like_family Trypa 96.7 0.0041 8.9E-08 41.0 5.0 30 34-69 88-117 (132)
55 PF13905 Thioredoxin_8: Thiore 96.6 0.0015 3.2E-08 40.4 2.2 28 31-64 68-95 (95)
56 COG0678 AHP1 Peroxiredoxin [Po 96.6 0.012 2.6E-07 41.0 6.6 72 5-83 84-163 (165)
57 PF13098 Thioredoxin_2: Thiore 96.4 0.011 2.3E-07 37.4 5.1 41 35-85 72-112 (112)
58 cd02950 TxlA TRX-like protein 96.1 0.031 6.6E-07 37.7 6.5 56 24-89 52-110 (142)
59 KOG0541|consensus 96.1 0.014 3.1E-07 40.8 4.7 62 5-73 90-156 (171)
60 cd02951 SoxW SoxW family; SoxW 95.9 0.022 4.7E-07 37.0 5.1 45 35-89 74-119 (125)
61 COG3054 Predicted transcriptio 95.9 0.022 4.8E-07 39.9 5.0 53 29-88 129-182 (184)
62 PRK10606 btuE putative glutath 95.6 0.067 1.5E-06 37.9 6.7 32 55-88 149-180 (183)
63 PF00837 T4_deiodinase: Iodoth 95.3 0.1 2.2E-06 38.7 7.0 56 24-88 180-236 (237)
64 TIGR02740 TraF-like TraF-like 95.1 0.064 1.4E-06 40.2 5.5 47 33-89 217-264 (271)
65 cd03065 PDI_b_Calsequestrin_N 94.9 0.072 1.6E-06 35.3 4.9 53 24-88 65-118 (120)
66 cd02956 ybbN ybbN protein fami 94.7 0.084 1.8E-06 32.4 4.6 44 31-85 52-95 (96)
67 cd02953 DsbDgamma DsbD gamma f 94.4 0.061 1.3E-06 33.7 3.3 42 34-85 61-103 (104)
68 cd02963 TRX_DnaJ TRX domain, D 94.3 0.13 2.9E-06 32.9 5.0 54 24-88 57-111 (111)
69 PRK11509 hydrogenase-1 operon 94.1 0.16 3.5E-06 34.4 5.1 54 25-89 70-124 (132)
70 cd02948 TRX_NDPK TRX domain, T 93.9 0.15 3.3E-06 32.0 4.6 51 25-88 51-102 (102)
71 cd02958 UAS UAS family; UAS is 93.8 0.25 5.3E-06 31.6 5.5 44 35-88 66-110 (114)
72 PRK09381 trxA thioredoxin; Pro 93.5 0.34 7.5E-06 30.4 5.7 46 31-87 61-106 (109)
73 TIGR01126 pdi_dom protein disu 93.2 0.28 6E-06 29.9 4.8 46 31-87 55-100 (102)
74 cd02994 PDI_a_TMX PDIa family, 93.0 0.37 8.1E-06 29.7 5.2 50 25-86 50-100 (101)
75 PRK10996 thioredoxin 2; Provis 92.7 0.38 8.3E-06 32.1 5.3 46 31-87 92-137 (139)
76 TIGR01068 thioredoxin thioredo 92.7 0.44 9.4E-06 28.8 5.1 53 24-87 46-99 (101)
77 PF05176 ATP-synt_10: ATP10 pr 92.1 0.27 5.9E-06 36.6 4.3 56 26-86 193-250 (252)
78 PF02630 SCO1-SenC: SCO1/SenC; 92.0 0.3 6.5E-06 34.0 4.2 59 4-70 102-173 (174)
79 cd02961 PDI_a_family Protein D 92.0 0.19 4E-06 30.1 2.8 51 24-84 49-100 (101)
80 PF13728 TraF: F plasmid trans 91.4 1.2 2.6E-05 32.2 6.9 41 34-84 172-213 (215)
81 cd03005 PDI_a_ERp46 PDIa famil 91.4 0.48 1E-05 29.0 4.3 42 31-83 59-100 (102)
82 COG1999 Uncharacterized protei 91.3 0.69 1.5E-05 33.3 5.5 74 4-89 118-204 (207)
83 cd02985 TRX_CDSP32 TRX family, 90.6 0.9 2E-05 28.5 5.1 51 24-86 46-100 (103)
84 cd02949 TRX_NTR TRX domain, no 90.4 0.8 1.7E-05 28.2 4.6 44 31-85 53-96 (97)
85 PRK00293 dipZ thiol:disulfide 90.2 0.41 8.9E-06 39.4 3.9 45 35-89 524-570 (571)
86 KOG0910|consensus 90.1 0.7 1.5E-05 32.1 4.5 53 24-87 93-146 (150)
87 cd02955 SSP411 TRX domain, SSP 89.9 1.8 3.9E-05 28.7 6.3 36 52-87 81-120 (124)
88 PF13778 DUF4174: Domain of un 89.8 0.68 1.5E-05 30.4 4.1 45 36-89 68-112 (118)
89 COG0386 BtuE Glutathione perox 89.7 0.7 1.5E-05 32.3 4.2 72 6-88 77-159 (162)
90 cd02996 PDI_a_ERp44 PDIa famil 89.5 0.56 1.2E-05 29.4 3.4 50 24-84 56-107 (108)
91 PF00085 Thioredoxin: Thioredo 88.6 1.7 3.7E-05 26.2 5.1 53 24-87 49-102 (103)
92 cd03004 PDI_a_ERdj5_C PDIa fam 88.6 0.76 1.7E-05 28.4 3.5 52 24-84 51-103 (104)
93 cd02954 DIM1 Dim1 family; Dim1 88.0 2.1 4.6E-05 28.2 5.5 51 31-88 54-110 (114)
94 cd03002 PDI_a_MPD1_like PDI fa 87.9 0.96 2.1E-05 28.1 3.7 42 34-85 63-108 (109)
95 PTZ00443 Thioredoxin domain-co 86.6 2.5 5.4E-05 30.9 5.7 47 31-88 92-138 (224)
96 cd02965 HyaE HyaE family; HyaE 86.5 1.7 3.8E-05 28.5 4.4 41 25-72 62-103 (111)
97 cd02997 PDI_a_PDIR PDIa family 86.5 1.6 3.4E-05 26.7 4.0 40 34-84 64-103 (104)
98 cd02998 PDI_a_ERp38 PDIa famil 86.1 1 2.2E-05 27.4 3.0 44 31-84 60-104 (105)
99 cd02984 TRX_PICOT TRX domain, 85.3 2.6 5.7E-05 25.4 4.6 40 24-70 46-86 (97)
100 cd03001 PDI_a_P5 PDIa family, 84.0 3 6.6E-05 25.3 4.5 51 25-85 51-102 (103)
101 PF03544 TonB_C: Gram-negative 83.8 1.8 3.9E-05 25.4 3.3 39 51-89 17-56 (79)
102 cd02947 TRX_family TRX family; 83.8 3.8 8.3E-05 23.5 4.7 51 24-85 41-92 (93)
103 TIGR01352 tonB_Cterm TonB fami 83.4 4.3 9.3E-05 23.4 4.8 39 51-89 11-50 (74)
104 cd02999 PDI_a_ERp44_like PDIa 83.0 2.6 5.7E-05 26.4 4.0 40 33-84 60-99 (100)
105 KOG1651|consensus 82.5 2.2 4.7E-05 30.2 3.6 17 54-70 138-154 (171)
106 TIGR02739 TraF type-F conjugat 82.3 9.9 0.00021 28.5 7.3 43 35-87 203-246 (256)
107 cd02975 PfPDO_like_N Pyrococcu 82.0 2.6 5.5E-05 27.1 3.7 53 24-88 53-109 (113)
108 COG0810 TonB Periplasmic prote 81.8 4.4 9.4E-05 29.7 5.2 50 36-90 171-221 (244)
109 smart00594 UAS UAS domain. 81.2 5.1 0.00011 26.0 5.0 45 35-85 76-121 (122)
110 PTZ00051 thioredoxin; Provisio 80.9 2.3 5E-05 25.8 3.1 41 24-71 49-90 (98)
111 cd03000 PDI_a_TMX3 PDIa family 80.2 5.1 0.00011 24.8 4.6 44 32-87 59-102 (104)
112 cd03003 PDI_a_ERdj5_N PDIa fam 79.7 3 6.5E-05 25.6 3.3 48 25-83 51-99 (101)
113 PRK10819 transport protein Ton 79.3 5 0.00011 29.8 4.9 41 49-90 181-222 (246)
114 cd02959 ERp19 Endoplasmic reti 78.8 1.8 4E-05 28.1 2.2 31 36-70 65-95 (117)
115 PF11211 DUF2997: Protein of u 78.3 6.8 0.00015 21.9 4.1 31 55-87 2-32 (48)
116 cd02989 Phd_like_TxnDC9 Phosdu 78.0 8.7 0.00019 24.6 5.2 43 24-73 53-96 (113)
117 TIGR00411 redox_disulf_1 small 77.1 9 0.00019 22.2 4.8 41 32-87 40-80 (82)
118 cd02991 UAS_ETEA UAS family, E 76.4 11 0.00025 24.5 5.5 44 35-88 66-112 (116)
119 PF11009 DUF2847: Protein of u 75.7 2.7 5.8E-05 27.4 2.2 30 34-69 66-95 (105)
120 cd02983 P5_C P5 family, C-term 74.9 15 0.00031 24.4 5.8 56 25-89 58-115 (130)
121 PF03190 Thioredox_DsbH: Prote 73.7 18 0.00039 25.4 6.2 60 27-88 74-143 (163)
122 PRK13703 conjugal pilus assemb 71.8 32 0.00069 25.6 7.5 43 36-88 197-240 (248)
123 PLN00410 U5 snRNP protein, DIM 71.4 16 0.00035 24.9 5.4 59 31-95 63-126 (142)
124 cd02993 PDI_a_APS_reductase PD 71.1 8.4 0.00018 24.1 3.8 45 31-84 62-108 (109)
125 PHA02278 thioredoxin-like prot 69.8 14 0.00031 23.4 4.6 31 35-72 62-92 (103)
126 KOG4614|consensus 69.4 6.2 0.00013 29.7 3.2 36 52-88 248-283 (287)
127 TIGR02187 GlrX_arch Glutaredox 69.1 17 0.00036 25.8 5.3 45 33-88 65-110 (215)
128 PF13103 TonB_2: TonB C termin 68.2 10 0.00022 22.6 3.5 38 49-86 25-63 (85)
129 cd02960 AGR Anterior Gradient 67.4 6.7 0.00014 26.4 2.8 23 49-71 77-99 (130)
130 PTZ00102 disulphide isomerase; 67.2 13 0.00027 29.2 4.7 53 25-89 85-138 (477)
131 PTZ00102 disulphide isomerase; 66.7 12 0.00027 29.3 4.6 55 25-89 410-465 (477)
132 COG3118 Thioredoxin domain-con 66.2 10 0.00022 29.2 3.9 46 31-87 83-128 (304)
133 TIGR00412 redox_disulf_2 small 64.8 27 0.00057 20.6 6.4 32 25-65 29-60 (76)
134 TIGR01130 ER_PDI_fam protein d 64.6 16 0.00035 28.1 4.9 53 25-88 54-108 (462)
135 cd02962 TMX2 TMX2 family; comp 64.4 17 0.00037 24.9 4.4 59 25-85 81-148 (152)
136 PF13192 Thioredoxin_3: Thiore 62.4 30 0.00064 20.3 5.1 49 24-86 28-76 (76)
137 cd03026 AhpF_NTD_C TRX-GRX-lik 58.7 15 0.00032 22.6 3.1 44 24-82 43-87 (89)
138 cd02957 Phd_like Phosducin (Ph 58.2 14 0.0003 23.3 3.0 40 24-71 55-95 (113)
139 smart00775 LNS2 LNS2 domain. T 57.7 11 0.00025 25.6 2.6 39 24-66 118-156 (157)
140 PF05228 CHASE4: CHASE4 domain 57.6 34 0.00074 22.5 4.9 18 52-69 50-67 (161)
141 PF11720 Inhibitor_I78: Peptid 57.1 17 0.00036 21.0 2.9 19 50-68 40-58 (60)
142 PF10417 1-cysPrx_C: C-termina 56.3 6.2 0.00013 21.1 0.9 14 87-100 1-14 (40)
143 PF00989 PAS: PAS fold; Inter 56.2 12 0.00026 22.3 2.3 17 53-69 12-28 (113)
144 cd02973 TRX_GRX_like Thioredox 55.9 17 0.00037 20.3 2.8 34 24-66 30-64 (67)
145 PF05988 DUF899: Bacterial pro 53.1 88 0.0019 22.9 7.1 65 6-82 118-183 (211)
146 PF14595 Thioredoxin_9: Thiore 52.9 22 0.00048 23.6 3.4 43 24-69 72-115 (129)
147 PF01217 Clat_adaptor_s: Clath 52.5 34 0.00073 22.6 4.2 35 52-86 2-36 (141)
148 KOG0907|consensus 52.1 50 0.0011 21.1 4.8 42 34-87 63-104 (106)
149 cd03006 PDI_a_EFP1_N PDIa fami 52.0 30 0.00064 22.3 3.8 48 25-83 62-111 (113)
150 PF08448 PAS_4: PAS fold; Int 51.3 16 0.00035 21.5 2.3 16 54-69 7-22 (110)
151 cd02992 PDI_a_QSOX PDIa family 50.4 30 0.00065 22.0 3.6 32 25-62 55-89 (114)
152 PHA02125 thioredoxin-like prot 49.4 51 0.0011 19.1 4.7 42 31-85 32-73 (75)
153 TIGR02794 tolA_full TolA prote 49.4 51 0.0011 25.7 5.3 19 49-67 284-302 (346)
154 PF13426 PAS_9: PAS domain; PD 48.7 19 0.00041 20.9 2.3 16 54-69 3-18 (104)
155 PHA02762 hypothetical protein; 48.6 31 0.00066 20.0 3.0 20 53-72 29-48 (62)
156 PRK11657 dsbG disulfide isomer 48.5 37 0.00079 25.0 4.2 42 34-86 208-249 (251)
157 COG3322 Predicted periplasmic 46.1 21 0.00045 27.4 2.6 35 52-86 104-141 (295)
158 cd02987 Phd_like_Phd Phosducin 45.5 33 0.00071 23.8 3.4 41 24-72 114-155 (175)
159 KOG2501|consensus 45.0 16 0.00034 25.6 1.7 29 35-69 105-133 (157)
160 TIGR01295 PedC_BrcD bacterioci 44.8 46 0.001 21.6 3.9 44 36-85 77-120 (122)
161 KOG0190|consensus 44.4 34 0.00074 28.1 3.8 46 33-89 87-132 (493)
162 cd02986 DLP Dim1 family, Dim1- 43.2 37 0.0008 22.4 3.2 51 31-88 54-110 (114)
163 PRK08671 methionine aminopepti 42.4 17 0.00037 27.2 1.7 14 52-65 275-288 (291)
164 PF09048 Cro: Cro; InterPro: 42.2 45 0.00098 19.5 3.1 38 35-72 16-57 (59)
165 PRK09974 putative regulator Pr 42.0 1E+02 0.0022 20.3 5.7 47 36-87 25-71 (111)
166 cd03073 PDI_b'_ERp72_ERp57 PDI 41.2 95 0.0021 19.8 5.3 56 24-87 51-109 (111)
167 PF02563 Poly_export: Polysacc 41.0 11 0.00025 22.7 0.5 35 53-87 30-65 (82)
168 COG5030 APS2 Clathrin adaptor 40.5 78 0.0017 21.9 4.5 41 53-94 3-44 (152)
169 PF07845 DUF1636: Protein of u 39.5 1.1E+02 0.0024 20.1 5.2 52 51-104 53-104 (116)
170 COG2143 Thioredoxin-related pr 38.8 1.1E+02 0.0024 21.7 5.2 32 35-72 105-136 (182)
171 PF02743 Cache_1: Cache domain 37.8 17 0.00036 21.4 0.8 16 52-67 53-68 (81)
172 cd02982 PDI_b'_family Protein 36.4 54 0.0012 19.6 3.1 56 24-87 44-101 (103)
173 cd08344 MhqB_like_N N-terminal 36.4 58 0.0013 19.9 3.3 19 52-70 91-109 (112)
174 PF02575 YbaB_DNA_bd: YbaB/Ebf 35.5 81 0.0018 19.2 3.8 32 53-84 31-63 (93)
175 PF01323 DSBA: DSBA-like thior 35.0 1.1E+02 0.0024 20.5 4.7 35 37-86 159-193 (193)
176 cd07244 FosA FosA, a Fosfomyci 34.0 1.1E+02 0.0023 18.9 4.3 20 52-71 92-111 (121)
177 PRK08132 FAD-dependent oxidore 32.8 1.2E+02 0.0027 24.4 5.3 47 29-87 497-543 (547)
178 PF12681 Glyoxalase_2: Glyoxal 31.6 64 0.0014 19.1 2.8 16 52-67 92-107 (108)
179 KOG4498|consensus 31.3 1.5E+02 0.0033 21.5 5.0 38 49-86 157-195 (197)
180 cd09011 Glo_EDI_BRP_like_23 Th 31.1 67 0.0015 19.7 2.9 17 52-68 101-117 (120)
181 cd07239 BphC5-RK37_C_like C-te 30.7 24 0.00052 23.3 0.8 38 53-104 100-137 (144)
182 KOG2507|consensus 30.5 1.2E+02 0.0025 24.9 4.6 32 50-85 76-107 (506)
183 PF13596 PAS_10: PAS domain; P 30.2 54 0.0012 19.9 2.3 16 54-69 11-26 (106)
184 cd01088 MetAP2 Methionine Amin 29.4 35 0.00077 25.5 1.6 14 52-65 275-288 (291)
185 PF14433 SUKH-3: SUKH-3 immuni 29.2 89 0.0019 20.6 3.4 34 52-85 102-136 (142)
186 PRK06769 hypothetical protein; 29.1 39 0.00085 23.1 1.7 32 55-87 6-42 (173)
187 PF03967 PRCH: Photosynthetic 28.9 34 0.00073 23.4 1.3 34 24-63 37-70 (136)
188 cd07252 BphC1-RGP6_N_like N-te 28.9 90 0.002 19.3 3.3 18 53-70 100-117 (120)
189 cd02995 PDI_a_PDI_a'_C PDIa fa 28.8 1.3E+02 0.0028 17.7 3.9 41 35-85 63-104 (104)
190 TIGR03027 pepcterm_export puta 27.8 71 0.0015 21.7 2.8 35 53-87 20-55 (165)
191 COG2870 RfaE ADP-heptose synth 27.4 1.6E+02 0.0034 24.1 4.9 62 22-85 141-203 (467)
192 KOG3559|consensus 26.9 55 0.0012 26.7 2.3 15 54-68 91-105 (598)
193 TIGR00501 met_pdase_II methion 26.6 43 0.00093 25.2 1.6 14 52-65 279-292 (295)
194 PF14903 WG_beta_rep: WG conta 26.4 48 0.0011 16.0 1.3 12 57-68 3-14 (35)
195 cd07561 Peptidase_S41_CPP_like 26.1 1.7E+02 0.0036 21.6 4.6 38 52-90 54-91 (256)
196 cd03007 PDI_a_ERp29_N PDIa fam 25.5 1.5E+02 0.0032 19.4 3.9 47 34-87 67-114 (116)
197 PF11453 DUF2950: Protein of u 25.5 93 0.002 23.7 3.2 31 52-87 231-261 (271)
198 PF00571 CBS: CBS domain CBS d 25.3 1.2E+02 0.0025 16.0 4.0 26 52-85 30-55 (57)
199 PF08750 CNP1: CNP1-like famil 25.2 65 0.0014 21.9 2.1 20 53-72 41-60 (139)
200 PF02643 DUF192: Uncharacteriz 24.9 85 0.0018 20.0 2.6 18 54-71 51-68 (108)
201 cd08350 BLMT_like BLMT, a bleo 24.8 98 0.0021 19.0 2.9 16 52-67 101-116 (120)
202 cd07267 THT_Oxygenase_N N-term 24.4 1.4E+02 0.003 18.2 3.5 19 52-70 92-110 (113)
203 cd07235 MRD Mitomycin C resist 24.2 1.1E+02 0.0023 18.7 3.0 17 52-68 105-121 (122)
204 cd08362 BphC5-RrK37_N_like N-t 23.8 1.3E+02 0.0028 18.2 3.2 19 52-70 99-117 (120)
205 PF13848 Thioredoxin_6: Thiore 23.6 2.2E+02 0.0048 18.7 7.0 55 24-86 127-183 (184)
206 cd08357 Glo_EDI_BRP_like_18 Th 23.5 1.2E+02 0.0026 18.3 3.1 17 52-68 107-123 (125)
207 PRK13907 rnhA ribonuclease H; 23.2 2.1E+02 0.0045 18.1 5.0 41 54-95 20-60 (128)
208 smart00701 PGRP Animal peptido 23.0 49 0.0011 22.3 1.2 15 51-65 62-76 (142)
209 cd07240 ED_TypeI_classII_N N-t 22.9 1.5E+02 0.0033 17.6 3.5 19 52-70 96-114 (117)
210 TIGR00495 crvDNA_42K 42K curve 22.9 59 0.0013 25.6 1.8 36 52-87 320-361 (389)
211 cd09012 Glo_EDI_BRP_like_24 Th 22.8 1.3E+02 0.0028 18.5 3.2 16 53-68 107-122 (124)
212 PRK06184 hypothetical protein; 22.7 2.4E+02 0.0052 22.4 5.2 48 30-89 448-495 (502)
213 cd06583 PGRP Peptidoglycan rec 22.5 80 0.0017 19.7 2.1 16 52-67 36-51 (126)
214 PF12105 SpoU_methylas_C: SpoU 22.3 29 0.00063 20.1 0.0 14 24-38 39-52 (57)
215 cd02988 Phd_like_VIAF Phosduci 22.2 2.7E+02 0.0058 19.6 4.9 41 38-85 145-188 (192)
216 cd03072 PDI_b'_ERp44 PDIb' fam 22.0 2E+02 0.0043 18.2 3.9 58 24-88 49-107 (111)
217 cd08356 Glo_EDI_BRP_like_17 Th 21.8 1.1E+02 0.0023 18.9 2.6 16 52-67 96-111 (113)
218 cd06539 CIDE_N_A CIDE_N domain 21.8 1.2E+02 0.0026 18.7 2.7 26 35-66 28-53 (78)
219 PF06491 Disulph_isomer: Disul 21.7 2.2E+02 0.0047 19.5 4.1 37 51-88 95-131 (136)
220 TIGR00213 GmhB_yaeD D,D-heptos 21.6 83 0.0018 21.3 2.2 33 55-87 3-40 (176)
221 PF13186 SPASM: Iron-sulfur cl 21.6 81 0.0018 17.1 1.8 16 52-67 4-19 (64)
222 cd08345 Fosfomycin_RP Fosfomyc 21.5 1.6E+02 0.0034 17.5 3.3 19 52-70 93-111 (113)
223 PRK08942 D,D-heptose 1,7-bisph 21.5 62 0.0013 22.0 1.5 10 56-65 6-15 (181)
224 PF01510 Amidase_2: N-acetylmu 21.4 62 0.0013 20.5 1.4 14 52-65 37-50 (132)
225 PRK14584 hmsS hemin storage sy 21.2 1.2E+02 0.0027 21.0 2.9 45 26-72 95-142 (153)
226 PF13511 DUF4124: Domain of un 21.0 71 0.0015 17.7 1.5 13 57-69 18-30 (60)
227 PF12166 DUF3595: Protein of u 21.0 2.1E+02 0.0045 22.4 4.6 67 23-96 318-394 (422)
228 KOG2792|consensus 20.9 57 0.0012 24.9 1.3 48 35-86 216-272 (280)
229 PF09631 Sen15: Sen15 protein; 20.8 95 0.0021 19.5 2.2 16 56-71 78-93 (101)
230 PF08741 YwhD: YwhD family; I 20.8 1.4E+02 0.003 21.0 3.0 49 24-74 3-51 (163)
231 PLN02798 nitrilase 20.6 1.1E+02 0.0024 22.4 2.8 18 52-69 104-121 (286)
232 PLN02309 5'-adenylylsulfate re 20.6 2.2E+02 0.0047 23.2 4.6 56 25-89 399-457 (457)
233 PRK09781 hypothetical protein; 20.6 34 0.00073 23.8 0.0 12 2-13 131-142 (181)
234 cd08363 FosB FosB, a fosfomyci 20.5 2.4E+02 0.0052 17.8 4.5 19 52-70 97-115 (131)
235 PF11954 DUF3471: Domain of un 20.4 1.5E+02 0.0033 18.0 3.1 21 52-72 66-86 (100)
236 PRK03760 hypothetical protein; 20.4 1.1E+02 0.0025 19.9 2.5 15 55-69 63-77 (117)
237 TIGR03028 EpsE polysaccharide 20.3 1.8E+02 0.004 21.0 3.9 35 53-87 21-56 (239)
238 cd07582 nitrilase_4 Uncharacte 20.2 1.1E+02 0.0025 22.5 2.8 18 52-69 109-126 (294)
239 cd07238 Glo_EDI_BRP_like_5 Thi 20.1 1.5E+02 0.0033 17.7 3.0 17 52-68 93-109 (112)
240 PRK13286 amiE acylamide amidoh 20.0 1.2E+02 0.0026 23.5 2.9 19 51-69 115-133 (345)
No 1
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.9e-26 Score=163.71 Aligned_cols=96 Identities=47% Similarity=0.826 Sum_probs=89.1
Q ss_pred chHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHH
Q psy13875 4 VDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR 83 (105)
Q Consensus 4 ~~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~ 83 (105)
.++||++|++. .++.+++++++|||++|.+++||++||+..++.|.+.|++||||++|+||++.+++.+.+|+++|+||
T Consensus 77 s~fsH~aW~~~-~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR 155 (194)
T COG0450 77 SVFSHKAWKAT-IREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILR 155 (194)
T ss_pred cHHHHHHHHhc-HHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHH
Confidence 46899999954 45557888899999999999999999999988899999999999999999999999999999999999
Q ss_pred HHHhhhhhhhcCCcccC
Q psy13875 84 LVKAFQFVDKHGEGSKR 100 (105)
Q Consensus 84 ~l~~l~~~~~~~~~~~~ 100 (105)
.|++||..++||++||+
T Consensus 156 ~idAlq~~~~hg~vcPa 172 (194)
T COG0450 156 VIDALQFVAKHGEVCPA 172 (194)
T ss_pred HHHHHHHHHHhCCCccC
Confidence 99999999999999997
No 2
>KOG0852|consensus
Probab=99.91 E-value=3.9e-24 Score=149.88 Aligned_cols=95 Identities=58% Similarity=0.976 Sum_probs=91.8
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875 5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL 84 (105)
Q Consensus 5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~ 84 (105)
+++|.||+ +++++.+|++.+++|||||.+.++|+.||++.++.|++.|..||||++|++|++-+...+.+|+++|+|+.
T Consensus 78 ~fshlAW~-ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRL 156 (196)
T KOG0852|consen 78 VFSHLAWI-NTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRL 156 (196)
T ss_pred hhhhhhHh-cCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHH
Confidence 68999999 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhcCCcccC
Q psy13875 85 VKAFQFVDKHGEGSKR 100 (105)
Q Consensus 85 l~~l~~~~~~~~~~~~ 100 (105)
+++.|..++||++||+
T Consensus 157 vqAfQ~td~~geVcPa 172 (196)
T KOG0852|consen 157 VQAFQFTDEHGEVCPA 172 (196)
T ss_pred HHHHhhhhccCccccC
Confidence 9999999999999986
No 3
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.86 E-value=1.5e-21 Score=138.68 Aligned_cols=93 Identities=25% Similarity=0.518 Sum_probs=81.6
Q ss_pred chHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHH
Q psy13875 4 VDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR 83 (105)
Q Consensus 4 ~~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~ 83 (105)
.+++|++|++.. ..+.+++||||||++++++++||+..+..|++.|+|||||++|+|+++++.....+++++++|+
T Consensus 75 ~~~~~~a~~~~~----~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~ 150 (187)
T PRK10382 75 THFTHKAWHSSS----ETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLR 150 (187)
T ss_pred CHHHHHHHHHhh----ccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHH
Confidence 357899999753 1234789999999999999999998665677889999999999999999988788899999999
Q ss_pred HHHhhhhhhhc-CCcccC
Q psy13875 84 LVKAFQFVDKH-GEGSKR 100 (105)
Q Consensus 84 ~l~~l~~~~~~-~~~~~~ 100 (105)
.|+++|+.+++ |++||+
T Consensus 151 ~l~alq~~~~~~g~~~p~ 168 (187)
T PRK10382 151 KIKAAQYVASHPGEVCPA 168 (187)
T ss_pred HHHhhhhHhhcCCeEeCC
Confidence 99999999999 799975
No 4
>PRK15000 peroxidase; Provisional
Probab=99.86 E-value=1.6e-21 Score=139.57 Aligned_cols=95 Identities=40% Similarity=0.810 Sum_probs=84.0
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875 5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL 84 (105)
Q Consensus 5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~ 84 (105)
+++|++|++.... .+++.+++||++||.+++++++||+..+..|++.|++||||++|+|+++++++.+.+|+++|+|+.
T Consensus 79 ~~~~~~w~~~~~~-~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~ 157 (200)
T PRK15000 79 EFVHNAWRNTPVD-KGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRM 157 (200)
T ss_pred HHHHHHHHhhHHH-hCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHH
Confidence 5789999865322 234446899999999999999999987767888999999999999999999999999999999999
Q ss_pred HHhhhhhhhcCCcccC
Q psy13875 85 VKAFQFVDKHGEGSKR 100 (105)
Q Consensus 85 l~~l~~~~~~~~~~~~ 100 (105)
|++||..+++|++||+
T Consensus 158 l~al~~~~~~~~~~p~ 173 (200)
T PRK15000 158 VDALQFHEEHGDVCPA 173 (200)
T ss_pred HHHhhhHHhcCCCcCC
Confidence 9999999999999986
No 5
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.85 E-value=6.4e-21 Score=137.88 Aligned_cols=94 Identities=27% Similarity=0.537 Sum_probs=81.3
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccC-CccceeEEEECCCCCEEEEEeccCCCCCCHHHHHH
Q psy13875 5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESA-GIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR 83 (105)
Q Consensus 5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~-G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~ 83 (105)
+++|++|++..... .++ +++||+|||.+++++++||+..+.. +.+.|++||||++|+|+++++++.+.+||++|+|+
T Consensus 78 ~~~h~aw~~~~~~~-~~~-~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr 155 (215)
T PRK13191 78 NISHIEWVMWIEKN-LKV-EVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILR 155 (215)
T ss_pred HHHHHHHHhhHHHh-cCC-CCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHH
Confidence 57999999644221 233 7899999999999999999976433 56789999999999999999999889999999999
Q ss_pred HHHhhhhhhhcCCcccC
Q psy13875 84 LVKAFQFVDKHGEGSKR 100 (105)
Q Consensus 84 ~l~~l~~~~~~~~~~~~ 100 (105)
.|++||..+++|++||+
T Consensus 156 ~l~alq~~~~~~~~~P~ 172 (215)
T PRK13191 156 AIRALQLVDKAGVVTPA 172 (215)
T ss_pred HHHHhhhhhhcCCCcCC
Confidence 99999999999999986
No 6
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.84 E-value=1.5e-20 Score=139.57 Aligned_cols=94 Identities=36% Similarity=0.669 Sum_probs=82.0
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875 5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL 84 (105)
Q Consensus 5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~ 84 (105)
+++|++|++... ..++..+++||+|||.+++++++||+..+ .|++.|++||||++|+|+++++++...+++++|+|++
T Consensus 143 ~~~h~aw~~~~~-~~~g~~~l~fPlLsD~~~~iakayGv~~~-~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~ 220 (261)
T PTZ00137 143 PFSHKAWKELDV-RQGGVSPLKFPLFSDISREVSKSFGLLRD-EGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRL 220 (261)
T ss_pred HHHHHHHHhhhh-hhccccCcceEEEEcCChHHHHHcCCCCc-CCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHH
Confidence 578999996321 12344588999999999999999999764 4778999999999999999999888889999999999
Q ss_pred HHhhhhhhhcCCcccC
Q psy13875 85 VKAFQFVDKHGEGSKR 100 (105)
Q Consensus 85 l~~l~~~~~~~~~~~~ 100 (105)
|+++|+.+++|++||+
T Consensus 221 l~alq~~~~~g~~cPa 236 (261)
T PTZ00137 221 FDAVQFAEKTGNVCPV 236 (261)
T ss_pred HHHhchhhhcCCCcCC
Confidence 9999999999999986
No 7
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.81 E-value=1.2e-19 Score=129.92 Aligned_cols=94 Identities=30% Similarity=0.582 Sum_probs=81.7
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875 5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL 84 (105)
Q Consensus 5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~ 84 (105)
+++|++|+++..... ++ .++||+++|++++++++||+..+..|.+.|++||||++|+|+++..++...+++++|+++.
T Consensus 72 ~~~~~~w~~~~~~~~-g~-~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~ 149 (202)
T PRK13190 72 IYSHIAWLRDIEERF-GI-KIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRI 149 (202)
T ss_pred HHHHHHHHHhHHHhc-CC-CceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHH
Confidence 478999997643222 22 4799999999999999999986656778999999999999999999888889999999999
Q ss_pred HHhhhhhhhcCCcccC
Q psy13875 85 VKAFQFVDKHGEGSKR 100 (105)
Q Consensus 85 l~~l~~~~~~~~~~~~ 100 (105)
|+++|..+++|++||+
T Consensus 150 l~~l~~~~~~~~~~p~ 165 (202)
T PRK13190 150 TKALQVNWKRKVATPA 165 (202)
T ss_pred HHHhhhHHhcCCCcCC
Confidence 9999999999999986
No 8
>PRK13189 peroxiredoxin; Provisional
Probab=99.81 E-value=1.6e-19 Score=131.14 Aligned_cols=94 Identities=35% Similarity=0.593 Sum_probs=81.0
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccC-CccceeEEEECCCCCEEEEEeccCCCCCCHHHHHH
Q psy13875 5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESA-GIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR 83 (105)
Q Consensus 5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~-G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~ 83 (105)
+++|++|++...+. .++ +++||+++|.+++++++||+..+.. +.+.|++||||++|+|+++++++.+.+++++|+++
T Consensus 80 ~~~h~aw~~~~~~~-~g~-~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr 157 (222)
T PRK13189 80 VFSHIKWVEWIKEK-LGV-EIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILR 157 (222)
T ss_pred HHHHHHHHHhHHHh-cCc-CcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHH
Confidence 57899999764322 223 6899999999999999999985432 34789999999999999999998888999999999
Q ss_pred HHHhhhhhhhcCCcccC
Q psy13875 84 LVKAFQFVDKHGEGSKR 100 (105)
Q Consensus 84 ~l~~l~~~~~~~~~~~~ 100 (105)
.|+++|..+++|++||+
T Consensus 158 ~l~alq~~~~~~~~~p~ 174 (222)
T PRK13189 158 LVKALQTSDEKGVATPA 174 (222)
T ss_pred HHHHhhhHhhcCcCcCC
Confidence 99999999999999986
No 9
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.81 E-value=2.8e-19 Score=129.37 Aligned_cols=95 Identities=29% Similarity=0.477 Sum_probs=80.4
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCC-ccceeEEEECCCCCEEEEEeccCCCCCCHHHHHH
Q psy13875 5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAG-IPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR 83 (105)
Q Consensus 5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G-~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~ 83 (105)
+++|++|++.+... .+ .+++||+++|.+++++++||+..+..| .+.|++||||++|+|+++++++...+++++++++
T Consensus 73 ~~~~~~w~~~i~~~-~~-~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr 150 (215)
T PRK13599 73 VFSHIKWVEWIKDN-TN-IAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILR 150 (215)
T ss_pred HHHHHHHHHhHHHh-cC-CCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHH
Confidence 57899999754321 11 278999999999999999999765433 2689999999999999999888888899999999
Q ss_pred HHHhhhhhhhcCCcccCC
Q psy13875 84 LVKAFQFVDKHGEGSKRV 101 (105)
Q Consensus 84 ~l~~l~~~~~~~~~~~~~ 101 (105)
+|++||..+++|++||+-
T Consensus 151 ~l~~lq~~~~~~~~~p~~ 168 (215)
T PRK13599 151 ALKALQTADQYGVALPEK 168 (215)
T ss_pred HHHHhhhhhhcCCCcCCC
Confidence 999999999999999863
No 10
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.79 E-value=1.1e-18 Score=124.82 Aligned_cols=94 Identities=32% Similarity=0.580 Sum_probs=80.8
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccC--CccceeEEEECCCCCEEEEEeccCCCCCCHHHHH
Q psy13875 5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESA--GIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVL 82 (105)
Q Consensus 5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~--G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil 82 (105)
.++|++|++++.... + .+++||+|+|++++++++||+..... +.+.|++||||++|+|+++++++...+++.++++
T Consensus 70 ~~~~~~~~~~i~~~~-~-~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell 147 (203)
T cd03016 70 VESHIKWIEDIEEYT-G-VEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEIL 147 (203)
T ss_pred HHHHHHHHhhHHHhc-C-CCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHH
Confidence 568999997654321 2 37899999999999999999986432 3468999999999999999999888899999999
Q ss_pred HHHHhhhhhhhcCCcccC
Q psy13875 83 RLVKAFQFVDKHGEGSKR 100 (105)
Q Consensus 83 ~~l~~l~~~~~~~~~~~~ 100 (105)
++|++||..+++|++||+
T Consensus 148 ~~l~~lq~~~~~~~~~p~ 165 (203)
T cd03016 148 RVVDALQLTDKHKVATPA 165 (203)
T ss_pred HHHHHHhhHhhcCcCcCC
Confidence 999999999999999986
No 11
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.77 E-value=2.2e-18 Score=122.72 Aligned_cols=95 Identities=59% Similarity=0.937 Sum_probs=81.6
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875 5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL 84 (105)
Q Consensus 5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~ 84 (105)
.++|.+|.... +..+++++++||+|+|.++++++.||++....|++.|++||||++|+|+++++++...+++++++++.
T Consensus 81 ~~~~~~~~~~~-~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~ 159 (199)
T PTZ00253 81 EYAHLQWTLQE-RKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRL 159 (199)
T ss_pred HHHHHHHHhCh-HhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHH
Confidence 46799997532 22234456899999999999999999987666778999999999999999999988889999999999
Q ss_pred HHhhhhhhhcCCcccC
Q psy13875 85 VKAFQFVDKHGEGSKR 100 (105)
Q Consensus 85 l~~l~~~~~~~~~~~~ 100 (105)
|+++|...+++++|+.
T Consensus 160 l~a~~~~~~~~~~cp~ 175 (199)
T PTZ00253 160 LEAFQFVEKHGEVCPA 175 (199)
T ss_pred HHhhhhHHhcCCEeCC
Confidence 9999999989988875
No 12
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.3e-18 Score=119.48 Aligned_cols=76 Identities=32% Similarity=0.480 Sum_probs=66.9
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccC--C----ccceeEEEECCCCCEEEEEeccCCCCCCH
Q psy13875 5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESA--G----IPLRGLFIIDTKGVLRQITVNDLPVGRSV 78 (105)
Q Consensus 5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~--G----~~~ratfiID~~G~V~~~~~~~~~~~~~~ 78 (105)
+++|++|+++. +|+||||||.+++|+++||++.+.. | ...|+|||||++|+|+++| ...+...|+
T Consensus 75 ~~~~~~F~~k~--------~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~-~~v~~~~h~ 145 (157)
T COG1225 75 PKSHKKFAEKH--------GLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW-RKVKVKGHA 145 (157)
T ss_pred HHHHHHHHHHh--------CCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe-cCCCCcccH
Confidence 68999999883 8999999999999999999987643 1 3799999999999999999 467778899
Q ss_pred HHHHHHHHhhh
Q psy13875 79 EEVLRLVKAFQ 89 (105)
Q Consensus 79 ~eil~~l~~l~ 89 (105)
++++++|+++.
T Consensus 146 ~~vl~~l~~l~ 156 (157)
T COG1225 146 DEVLAALKKLA 156 (157)
T ss_pred HHHHHHHHHhc
Confidence 99999998874
No 13
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.76 E-value=5.1e-18 Score=119.90 Aligned_cols=92 Identities=36% Similarity=0.689 Sum_probs=79.4
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875 5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL 84 (105)
Q Consensus 5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~ 84 (105)
+++|++|++... .+.+++||++||++++++++||+..+..|++.|+|||||++|+|+++++.....+++++++++.
T Consensus 76 ~~~~~~~~~~~~----~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~ 151 (187)
T TIGR03137 76 HFVHKAWHDTSE----AIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRK 151 (187)
T ss_pred HHHHHHHHhhhh----hccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHH
Confidence 468999996532 1347899999999999999999986655777899999999999999999777777899999999
Q ss_pred HHhhhhhhhc-CCcccC
Q psy13875 85 VKAFQFVDKH-GEGSKR 100 (105)
Q Consensus 85 l~~l~~~~~~-~~~~~~ 100 (105)
|++++..+++ |+.||+
T Consensus 152 l~~~~~~~~~~~~~~~~ 168 (187)
T TIGR03137 152 IKAAQYVAAHPGEVCPA 168 (187)
T ss_pred HHHhhhHHhcCCeeeCC
Confidence 9999999999 788875
No 14
>KOG0854|consensus
Probab=99.71 E-value=4.5e-17 Score=114.91 Aligned_cols=95 Identities=27% Similarity=0.514 Sum_probs=82.4
Q ss_pred hHHHHHHHHhhhcCCCCC--CCCCceEEeeCcchHHhhhCCcccc------CCccceeEEEECCCCCEEEEEeccCCCCC
Q psy13875 5 DEGDEVWLEDVKQGDGGL--GDLKYPLLADFKKEIATSYGVLIES------AGIPLRGLFIIDTKGVLRQITVNDLPVGR 76 (105)
Q Consensus 5 ~~sh~~w~~~~~~~~~~~--~~l~fpllsD~~~~vak~ygv~~~~------~G~~~ratfiID~~G~V~~~~~~~~~~~~ 76 (105)
++||++|.+++... +.. +.++||++.|++.+++-.||+..++ .|.+.|+.||||++.+|+..+.++.+++|
T Consensus 77 vesH~~Wi~DIks~-~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~lYP~ttGR 155 (224)
T KOG0854|consen 77 VESHKDWIKDIKSY-AKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSFLYPSTTGR 155 (224)
T ss_pred HHHHHHHHHHHHHH-HhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEEEcccccCc
Confidence 68999999887322 211 2489999999999999999998753 25789999999999999999999999999
Q ss_pred CHHHHHHHHHhhhhhhhcCCcccC
Q psy13875 77 SVEEVLRLVKAFQFVDKHGEGSKR 100 (105)
Q Consensus 77 ~~~eil~~l~~l~~~~~~~~~~~~ 100 (105)
|++|+||.|+.||..++.+++||.
T Consensus 156 N~dEiLRvidsLqlt~~k~VaTP~ 179 (224)
T KOG0854|consen 156 NFDEILRVIDSLQLTDKKGVATPV 179 (224)
T ss_pred CHHHHHHHHHHHhhhccccccccc
Confidence 999999999999998888888875
No 15
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.70 E-value=2.1e-16 Score=109.95 Aligned_cols=94 Identities=53% Similarity=0.939 Sum_probs=79.4
Q ss_pred HHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHH
Q psy13875 6 EGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLV 85 (105)
Q Consensus 6 ~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l 85 (105)
+++++|.+.... .+++.+++||+++|.+++++++||+.....|.+.|++||||++|+|++++++..+.+++.+++++.|
T Consensus 75 ~~~~~~~~~~~~-~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l 153 (173)
T cd03015 75 FSHLAWRNTPRK-EGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVL 153 (173)
T ss_pred HHHHHHHHhhhh-hCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHH
Confidence 467789866321 1123468999999999999999999866556778999999999999999998777778999999999
Q ss_pred HhhhhhhhcCCcccC
Q psy13875 86 KAFQFVDKHGEGSKR 100 (105)
Q Consensus 86 ~~l~~~~~~~~~~~~ 100 (105)
+.++...++|++||.
T Consensus 154 ~~~~~~~~~~~~~~~ 168 (173)
T cd03015 154 DALQFVEEHGEVCPA 168 (173)
T ss_pred HHhhhhhhcCCCcCC
Confidence 999999999999986
No 16
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.49 E-value=1.9e-13 Score=94.94 Aligned_cols=75 Identities=20% Similarity=0.323 Sum_probs=61.9
Q ss_pred hHHHHHHHHhhhcCCCCCCCCC-ceEEeeC-cchHHhhhCCcccc---CCccceeEEEECCCCCEEEEEecc-CCCCCCH
Q psy13875 5 DEGDEVWLEDVKQGDGGLGDLK-YPLLADF-KKEIATSYGVLIES---AGIPLRGLFIIDTKGVLRQITVND-LPVGRSV 78 (105)
Q Consensus 5 ~~sh~~w~~~~~~~~~~~~~l~-fpllsD~-~~~vak~ygv~~~~---~G~~~ratfiID~~G~V~~~~~~~-~~~~~~~ 78 (105)
+++|++|+++. +++ |+++||. +++++++||+.... .|++.|++||||++|+|++.+++. ....+++
T Consensus 87 ~~~~~~f~~~~--------~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~ 158 (167)
T PRK00522 87 PFAQKRFCGAE--------GLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDY 158 (167)
T ss_pred HHHHHHHHHhC--------CCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCH
Confidence 57899999772 555 8999995 56999999997543 578899999999999999999854 4556799
Q ss_pred HHHHHHHHh
Q psy13875 79 EEVLRLVKA 87 (105)
Q Consensus 79 ~eil~~l~~ 87 (105)
++++++|++
T Consensus 159 ~~~l~~l~~ 167 (167)
T PRK00522 159 DAALAALKA 167 (167)
T ss_pred HHHHHHhhC
Confidence 999998864
No 17
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.46 E-value=1.9e-13 Score=94.15 Aligned_cols=63 Identities=22% Similarity=0.298 Sum_probs=52.2
Q ss_pred chHHHHHHHHhhhcCCCCCCCC--CceEEeeCcchHHhhhCCccccC--Cc---cceeEEEECCCCCEEEEEeccCCCC
Q psy13875 4 VDEGDEVWLEDVKQGDGGLGDL--KYPLLADFKKEIATSYGVLIESA--GI---PLRGLFIIDTKGVLRQITVNDLPVG 75 (105)
Q Consensus 4 ~~~sh~~w~~~~~~~~~~~~~l--~fpllsD~~~~vak~ygv~~~~~--G~---~~ratfiID~~G~V~~~~~~~~~~~ 75 (105)
.+++|++|+++. ++ +||||||++++++++||+..+.. |+ +.|++|||| +|+|+++++...+.+
T Consensus 75 ~~~~~~~~~~~~--------~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~~~~~~~ 144 (155)
T cd03013 75 DPFVMKAWGKAL--------GAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFVEEDPGD 144 (155)
T ss_pred CHHHHHHHHHhh--------CCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEEecCCCC
Confidence 478999999773 44 89999999999999999986543 43 689999999 799999999765433
No 18
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.35 E-value=4.7e-12 Score=84.84 Aligned_cols=71 Identities=24% Similarity=0.430 Sum_probs=58.6
Q ss_pred hHHHHHHHHhhhcCCCCCCC-CCceEEeeCc-chHHhhhCCccccCCccceeEEEECCCCCEEEEEecc-CCCCCCHHHH
Q psy13875 5 DEGDEVWLEDVKQGDGGLGD-LKYPLLADFK-KEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVND-LPVGRSVEEV 81 (105)
Q Consensus 5 ~~sh~~w~~~~~~~~~~~~~-l~fpllsD~~-~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~-~~~~~~~~ei 81 (105)
++++++|.++. + .+||+++|.. ++++++||+..+..|++.|++||||++|+|++++++. ....++.+++
T Consensus 69 ~~~~~~~~~~~--------~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~ 140 (143)
T cd03014 69 PFAQKRWCGAE--------GVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAA 140 (143)
T ss_pred HHHHHHHHHhc--------CCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHH
Confidence 56789999763 3 3799999996 9999999998765677789999999999999999975 3445788877
Q ss_pred HH
Q psy13875 82 LR 83 (105)
Q Consensus 82 l~ 83 (105)
++
T Consensus 141 ~~ 142 (143)
T cd03014 141 LA 142 (143)
T ss_pred hh
Confidence 64
No 19
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.27 E-value=2.6e-11 Score=81.39 Aligned_cols=75 Identities=33% Similarity=0.552 Sum_probs=61.4
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCceEEeeCc--chHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHH
Q psy13875 5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFK--KEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVL 82 (105)
Q Consensus 5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~--~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil 82 (105)
++.+++|+++. +++||+++|.+ +++++.||+.....|++.|++||||++|+|++.+.+.....++..++.
T Consensus 73 ~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~ 144 (149)
T cd03018 73 PFSLRAWAEEN--------GLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYD 144 (149)
T ss_pred HHHHHHHHHhc--------CCCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEecCCcccccchhHH
Confidence 45789999762 67999999988 999999999865446677899999999999999998775566777777
Q ss_pred HHHHh
Q psy13875 83 RLVKA 87 (105)
Q Consensus 83 ~~l~~ 87 (105)
+.|++
T Consensus 145 ~~~~~ 149 (149)
T cd03018 145 EALDA 149 (149)
T ss_pred HHhhC
Confidence 76653
No 20
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.18 E-value=1.6e-10 Score=78.50 Aligned_cols=73 Identities=26% Similarity=0.311 Sum_probs=57.2
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccC--C----ccceeEEEECCCCCEEEEEeccCCCCCCH
Q psy13875 5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESA--G----IPLRGLFIIDTKGVLRQITVNDLPVGRSV 78 (105)
Q Consensus 5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~--G----~~~ratfiID~~G~V~~~~~~~~~~~~~~ 78 (105)
++++++|+++. +++||+++|+++.++++||+..... | ...|++||||++|+|++++.+. ....+.
T Consensus 75 ~~~~~~~~~~~--------~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~-~~~~~~ 145 (154)
T PRK09437 75 PEKLSRFAEKE--------LLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKF-KTSNHH 145 (154)
T ss_pred HHHHHHHHHHh--------CCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCC-CcchhH
Confidence 46788999762 6799999999999999999874321 1 1248999999999999999864 334578
Q ss_pred HHHHHHHH
Q psy13875 79 EEVLRLVK 86 (105)
Q Consensus 79 ~eil~~l~ 86 (105)
++++++++
T Consensus 146 ~~~~~~~~ 153 (154)
T PRK09437 146 DVVLDYLK 153 (154)
T ss_pred HHHHHHHh
Confidence 88888775
No 21
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.16 E-value=1.8e-10 Score=76.42 Aligned_cols=70 Identities=30% Similarity=0.352 Sum_probs=56.2
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCcccc---CCccceeEEEECCCCCEEEEEeccCCCCCCHHHH
Q psy13875 5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIES---AGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEV 81 (105)
Q Consensus 5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~---~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~ei 81 (105)
++..++|+++. +++||+++|.+++++++||+.... .+...|++||||++|+|++++.+.. .+++.+++
T Consensus 68 ~~~~~~~~~~~--------~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~-~~~~~~~~ 138 (140)
T cd03017 68 VESHAKFAEKY--------GLPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVK-PKGHAEEV 138 (140)
T ss_pred HHHHHHHHHHh--------CCCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecCC-ccchHHHH
Confidence 45678888762 679999999999999999988531 1335699999999999999998755 57788887
Q ss_pred HH
Q psy13875 82 LR 83 (105)
Q Consensus 82 l~ 83 (105)
++
T Consensus 139 ~~ 140 (140)
T cd03017 139 LE 140 (140)
T ss_pred hC
Confidence 63
No 22
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.06 E-value=8.9e-10 Score=72.94 Aligned_cols=68 Identities=44% Similarity=0.797 Sum_probs=53.4
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccC---CccceeEEEECCCCCEEEEEeccCCCCCCHH
Q psy13875 5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESA---GIPLRGLFIIDTKGVLRQITVNDLPVGRSVE 79 (105)
Q Consensus 5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~---G~~~ratfiID~~G~V~~~~~~~~~~~~~~~ 79 (105)
++..++|+++. ..++||+++|+++.++++||+..... +...|++||||++|+|++.+.+........+
T Consensus 67 ~~~~~~~~~~~-------~~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~~~~~~~ 137 (140)
T cd02971 67 PFSHKAWAEKE-------GGLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPLPTGRNAE 137 (140)
T ss_pred HHHHHHHHhcc-------cCCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecCCCCCcChH
Confidence 45678899662 16799999999999999999985432 3468999999999999999998765343343
No 23
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.00 E-value=1.3e-09 Score=71.93 Aligned_cols=53 Identities=19% Similarity=0.282 Sum_probs=46.4
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEecc
Q psy13875 5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVND 71 (105)
Q Consensus 5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~ 71 (105)
++..++|+++ .+++||+++|.++.+++.||+. + .|++||||++|+|++++.|+
T Consensus 73 ~~~~~~~~~~--------~~~~~p~~~D~~~~~~~~~~v~----~--~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 73 LANVKSAVLR--------YGITYPVANDNDYATWRAYGNQ----Y--WPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred HHHHHHHHHH--------cCCCCCEEECCchHHHHHhCCC----c--CCeEEEECCCCcEEEEEecC
Confidence 5577888877 2789999999999999999986 3 59999999999999999874
No 24
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.00 E-value=1.2e-09 Score=72.76 Aligned_cols=57 Identities=25% Similarity=0.438 Sum_probs=46.4
Q ss_pred HHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCcccc-----------------------CCccceeEEEECCCC
Q psy13875 6 EGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIES-----------------------AGIPLRGLFIIDTKG 62 (105)
Q Consensus 6 ~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~-----------------------~G~~~ratfiID~~G 62 (105)
+.+++|+++ .+++||+++|+++.++++||+.... .+...|++||||++|
T Consensus 69 ~~~~~~~~~--------~~~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g 140 (149)
T cd02970 69 EKLEAFDKG--------KFLPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDG 140 (149)
T ss_pred HHHHHHHHh--------cCCCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCC
Confidence 456678865 2789999999999999999996321 124699999999999
Q ss_pred CEEEEEec
Q psy13875 63 VLRQITVN 70 (105)
Q Consensus 63 ~V~~~~~~ 70 (105)
+|++.+++
T Consensus 141 ~i~~~~~~ 148 (149)
T cd02970 141 TILFAHVD 148 (149)
T ss_pred eEEEEecC
Confidence 99999975
No 25
>KOG0855|consensus
Probab=99.00 E-value=1.8e-09 Score=75.96 Aligned_cols=75 Identities=31% Similarity=0.498 Sum_probs=64.3
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccC-CccceeEEEECCCCCEEEEEeccCCCCCCHHHHHH
Q psy13875 5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESA-GIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR 83 (105)
Q Consensus 5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~-G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~ 83 (105)
..||++|+.+ .+++|.||||+.+++.+.+|+..... |++.|++||.|+.|....+....+.++.++++.+.
T Consensus 135 s~sqKaF~sK--------qnlPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~k~~ik~~~isPevsvd~a~k 206 (211)
T KOG0855|consen 135 SASQKAFASK--------QNLPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGVKQLIKNNQISPEVSVDEALK 206 (211)
T ss_pred hHHHHHhhhh--------ccCCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCeEEEEEecccCccccHHHHHH
Confidence 4699999976 39999999999999999999987443 67999999999998888887767777889999998
Q ss_pred HHHh
Q psy13875 84 LVKA 87 (105)
Q Consensus 84 ~l~~ 87 (105)
.|.+
T Consensus 207 ~~~~ 210 (211)
T KOG0855|consen 207 FLKA 210 (211)
T ss_pred HHhc
Confidence 8754
No 26
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.99 E-value=1.6e-09 Score=70.26 Aligned_cols=55 Identities=31% Similarity=0.559 Sum_probs=47.1
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEE
Q psy13875 5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQI 67 (105)
Q Consensus 5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~ 67 (105)
++.+++|.++. +++||+++|.++.++++||+.........|++||||++|+|+|+
T Consensus 70 ~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 70 PEEIKQFLEEY--------GLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHHHHHHHHH--------TCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred ccchhhhhhhh--------ccccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 45789999874 68999999999999999999865433468999999999999985
No 27
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=9.7e-10 Score=75.80 Aligned_cols=61 Identities=23% Similarity=0.457 Sum_probs=52.0
Q ss_pred CchHHHHHHHHhhhcCCCCCCCCCceEEeeCc-chHHhhhCCccccC---CccceeEEEECCCCCEEEEEec
Q psy13875 3 FVDEGDEVWLEDVKQGDGGLGDLKYPLLADFK-KEIATSYGVLIESA---GIPLRGLFIIDTKGVLRQITVN 70 (105)
Q Consensus 3 ~~~~sh~~w~~~~~~~~~~~~~l~fpllsD~~-~~vak~ygv~~~~~---G~~~ratfiID~~G~V~~~~~~ 70 (105)
-||++|++||.. .|+. +...|||.. .++.++||+...+. |+..|+.|++|.+|+|.|..+-
T Consensus 85 DLPFAq~RfC~a-----eGi~--nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~elv 149 (158)
T COG2077 85 DLPFAQKRFCGA-----EGIE--NVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSELV 149 (158)
T ss_pred CChhHHhhhhhh-----cCcc--cceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEEcc
Confidence 489999999977 4565 478899974 67999999998654 7899999999999999999874
No 28
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.87 E-value=1.5e-08 Score=71.30 Aligned_cols=66 Identities=26% Similarity=0.407 Sum_probs=51.8
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCceE-EeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHH
Q psy13875 5 DEGDEVWLEDVKQGDGGLGDLKYPL-LADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR 83 (105)
Q Consensus 5 ~~sh~~w~~~~~~~~~~~~~l~fpl-lsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~ 83 (105)
.+.+++|.++. +++||+ ++|.++.+++.||+. | .|+|||||++|+|++.+.|.+ +.+++.+
T Consensus 109 ~~~~~~~~~~~--------~~~~~~~~~D~~~~~~~~~gv~----~--~P~t~vid~~G~i~~~~~G~~----~~~~l~~ 170 (185)
T PRK15412 109 RQKAISWLKEL--------GNPYALSLFDGDGMLGLDLGVY----G--APETFLIDGNGIIRYRHAGDL----NPRVWES 170 (185)
T ss_pred HHHHHHHHHHc--------CCCCceEEEcCCccHHHhcCCC----c--CCeEEEECCCceEEEEEecCC----CHHHHHH
Confidence 35688899762 678994 899999999999987 4 699999999999999999866 3444444
Q ss_pred HHHhh
Q psy13875 84 LVKAF 88 (105)
Q Consensus 84 ~l~~l 88 (105)
.|+.+
T Consensus 171 ~i~~~ 175 (185)
T PRK15412 171 EIKPL 175 (185)
T ss_pred HHHHH
Confidence 45444
No 29
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.84 E-value=1.3e-08 Score=68.13 Aligned_cols=58 Identities=26% Similarity=0.421 Sum_probs=47.0
Q ss_pred HHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCcccc---CCccceeEEEECCCCCEEEEEeccCC
Q psy13875 8 DEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIES---AGIPLRGLFIIDTKGVLRQITVNDLP 73 (105)
Q Consensus 8 h~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~---~G~~~ratfiID~~G~V~~~~~~~~~ 73 (105)
.++|+++ .+++||+++|.++.++++||+.... .|+..|.+||||++|+|++.+.+...
T Consensus 76 ~~~~~~~--------~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 76 VREFLKK--------YGINFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp HHHHHHH--------TTTTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred HHHHHHh--------hCCCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 5666655 2789999999999999999976322 13468999999999999999998654
No 30
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.82 E-value=2.3e-08 Score=69.57 Aligned_cols=64 Identities=20% Similarity=0.291 Sum_probs=50.9
Q ss_pred HHHHHHHHhhhcCCCCCCCCCce-EEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875 6 EGDEVWLEDVKQGDGGLGDLKYP-LLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL 84 (105)
Q Consensus 6 ~sh~~w~~~~~~~~~~~~~l~fp-llsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~ 84 (105)
+.+++|+++. +++|| ++.|+++++++.||+. | .|++|+||++|+|++.+.|.. +.+++.+.
T Consensus 105 ~~~~~~~~~~--------~~~f~~v~~D~~~~~~~~~~v~----~--~P~~~~id~~G~i~~~~~G~~----~~~~l~~~ 166 (173)
T TIGR00385 105 QNALKFLKEL--------GNPYQAILIDPNGKLGLDLGVY----G--APETFLVDGNGVILYRHAGPL----NNEVWTEG 166 (173)
T ss_pred HHHHHHHHHc--------CCCCceEEECCCCchHHhcCCe----e--CCeEEEEcCCceEEEEEeccC----CHHHHHHH
Confidence 4577888762 67898 5689999999999987 4 699999999999999998754 45556555
Q ss_pred HHh
Q psy13875 85 VKA 87 (105)
Q Consensus 85 l~~ 87 (105)
|++
T Consensus 167 l~~ 169 (173)
T TIGR00385 167 FLP 169 (173)
T ss_pred HHH
Confidence 554
No 31
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.81 E-value=4.3e-08 Score=67.67 Aligned_cols=74 Identities=19% Similarity=0.205 Sum_probs=55.4
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCC-----CCCCHH
Q psy13875 5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLP-----VGRSVE 79 (105)
Q Consensus 5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~-----~~~~~~ 79 (105)
++..++|+++ .+++||+++|.++.+++.||+. ..|.+||||++|+|++....... ...+.+
T Consensus 77 ~~~~~~~~~~--------~~~~~~~l~D~~~~~~~~~~v~------~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~ 142 (171)
T cd02969 77 PENMKAKAKE--------HGYPFPYLLDETQEVAKAYGAA------CTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGR 142 (171)
T ss_pred HHHHHHHHHH--------CCCCceEEECCchHHHHHcCCC------cCCcEEEECCCCeEEEeecccCCcccccccccHH
Confidence 3455666654 2678999999999999999986 35999999999999988643221 123568
Q ss_pred HHHHHHHhhhhhh
Q psy13875 80 EVLRLVKAFQFVD 92 (105)
Q Consensus 80 eil~~l~~l~~~~ 92 (105)
++.++|+++....
T Consensus 143 ~~~~~i~~~l~~~ 155 (171)
T cd02969 143 DLRAALDALLAGK 155 (171)
T ss_pred HHHHHHHHHHcCC
Confidence 8888888866433
No 32
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.78 E-value=1.9e-08 Score=71.63 Aligned_cols=58 Identities=16% Similarity=0.329 Sum_probs=45.6
Q ss_pred CCCce---EEeeCcchHHhhhCCccccCCccceeE-EEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875 24 DLKYP---LLADFKKEIATSYGVLIESAGIPLRGL-FIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF 88 (105)
Q Consensus 24 ~l~fp---llsD~~~~vak~ygv~~~~~G~~~rat-fiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l 88 (105)
+..|| ++.|.++.++++||+. | .|+| ||||++|+|++.+.|.++.+ ..++++..|+++
T Consensus 121 ~~~~P~~~vllD~~g~v~~~~gv~----~--~P~T~fVIDk~GkVv~~~~G~l~~e-e~e~~~~li~~l 182 (184)
T TIGR01626 121 KKENPWSQVVLDDKGAVKNAWQLN----S--EDSAIIVLDKTGKVKFVKEGALSDS-DIQTVISLVNGL 182 (184)
T ss_pred cccCCcceEEECCcchHHHhcCCC----C--CCceEEEECCCCcEEEEEeCCCCHH-HHHHHHHHHHHH
Confidence 55777 9999999999999987 3 5788 99999999999999876422 445566666554
No 33
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.75 E-value=7.4e-08 Score=65.97 Aligned_cols=65 Identities=20% Similarity=0.446 Sum_probs=52.7
Q ss_pred HHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHH
Q psy13875 6 EGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLV 85 (105)
Q Consensus 6 ~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l 85 (105)
+.++.|+++. +++||++.|.++.++++||+. ..|++||||++|+|++.+.|.. +.+++.+.|
T Consensus 107 ~~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~g~i~~~~~g~~----~~~~l~~~l 168 (173)
T PRK03147 107 LAVKNFVNRY--------GLTFPVAIDKGRQVIDAYGVG------PLPTTFLIDKDGKVVKVITGEM----TEEQLEEYL 168 (173)
T ss_pred HHHHHHHHHh--------CCCceEEECCcchHHHHcCCC------CcCeEEEECCCCcEEEEEeCCC----CHHHHHHHH
Confidence 5677888662 779999999999999999986 3699999999999999987754 456666666
Q ss_pred Hhh
Q psy13875 86 KAF 88 (105)
Q Consensus 86 ~~l 88 (105)
+++
T Consensus 169 ~~~ 171 (173)
T PRK03147 169 EKI 171 (173)
T ss_pred HHh
Confidence 654
No 34
>PLN02412 probable glutathione peroxidase
Probab=98.74 E-value=4e-08 Score=68.25 Aligned_cols=72 Identities=15% Similarity=0.152 Sum_probs=51.4
Q ss_pred HHHHHHHHhhhcCCCCCCCCCceEEee--Ccc-hHHhhhCCccccC----C--c-cceeEEEECCCCCEEEEEeccCCCC
Q psy13875 6 EGDEVWLEDVKQGDGGLGDLKYPLLAD--FKK-EIATSYGVLIESA----G--I-PLRGLFIIDTKGVLRQITVNDLPVG 75 (105)
Q Consensus 6 ~sh~~w~~~~~~~~~~~~~l~fpllsD--~~~-~vak~ygv~~~~~----G--~-~~ratfiID~~G~V~~~~~~~~~~~ 75 (105)
+.++.|+++ .+++||+++| .++ .+++.|+++..+. | + ..|+|||||++|+|++++.+..
T Consensus 83 ~~~~~~~~~--------~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~--- 151 (167)
T PLN02412 83 EIQQTVCTR--------FKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTT--- 151 (167)
T ss_pred HHHHHHHHc--------cCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCC---
Confidence 446777765 2789999984 664 8888887543211 1 2 2699999999999999998765
Q ss_pred CCHHHHHHHHHhhh
Q psy13875 76 RSVEEVLRLVKAFQ 89 (105)
Q Consensus 76 ~~~~eil~~l~~l~ 89 (105)
+.+++.+.|+++.
T Consensus 152 -~~~~l~~~i~~~l 164 (167)
T PLN02412 152 -SPLKIEKDIQNLL 164 (167)
T ss_pred -CHHHHHHHHHHHH
Confidence 4566777776653
No 35
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.70 E-value=3.4e-08 Score=67.18 Aligned_cols=73 Identities=15% Similarity=0.281 Sum_probs=47.6
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCceEEeeC---cchHHhhhCCccccC-Ccc--ceeEEEECCCCCEEEEEeccCCCCCCH
Q psy13875 5 DEGDEVWLEDVKQGDGGLGDLKYPLLADF---KKEIATSYGVLIESA-GIP--LRGLFIIDTKGVLRQITVNDLPVGRSV 78 (105)
Q Consensus 5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~---~~~vak~ygv~~~~~-G~~--~ratfiID~~G~V~~~~~~~~~~~~~~ 78 (105)
++.+++|+++. .+++||+++|. +.....+|+...... +++ .|++||||++|+|++.+.+.. +.
T Consensus 74 ~~~~~~f~~~~-------~~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~----~~ 142 (153)
T TIGR02540 74 SKEIESFARRN-------YGVTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEE----PV 142 (153)
T ss_pred HHHHHHHHHHh-------cCCCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCC----CH
Confidence 46799999641 27899999983 334444443221111 221 345999999999999998754 46
Q ss_pred HHHHHHHHhh
Q psy13875 79 EEVLRLVKAF 88 (105)
Q Consensus 79 ~eil~~l~~l 88 (105)
+++.+.|++|
T Consensus 143 ~~l~~~i~~l 152 (153)
T TIGR02540 143 EEIRPEITAL 152 (153)
T ss_pred HHHHHHHHHh
Confidence 6777777654
No 36
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.64 E-value=1.2e-07 Score=62.09 Aligned_cols=55 Identities=27% Similarity=0.448 Sum_probs=45.6
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCce-EEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCC
Q psy13875 5 DEGDEVWLEDVKQGDGGLGDLKYP-LLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLP 73 (105)
Q Consensus 5 ~~sh~~w~~~~~~~~~~~~~l~fp-llsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~ 73 (105)
.+.+++|+++. +++|+ +++|.++.+++.||+. + .|++||||++|+|++.+.|..+
T Consensus 67 ~~~~~~~~~~~--------~~~~~~~~~D~~~~~~~~~~v~----~--~P~~~~ld~~G~v~~~~~G~~~ 122 (127)
T cd03010 67 PENALAWLARH--------GNPYAAVGFDPDGRVGIDLGVY----G--VPETFLIDGDGIIRYKHVGPLT 122 (127)
T ss_pred HHHHHHHHHhc--------CCCCceEEECCcchHHHhcCCC----C--CCeEEEECCCceEEEEEeccCC
Confidence 46778888662 56775 6699999999999997 3 6999999999999999988653
No 37
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.63 E-value=5.1e-08 Score=66.35 Aligned_cols=61 Identities=21% Similarity=0.243 Sum_probs=42.6
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCceEEeeC--cch-HHhhhCCccccC-C------ccceeEEEECCCCCEEEEEeccC
Q psy13875 5 DEGDEVWLEDVKQGDGGLGDLKYPLLADF--KKE-IATSYGVLIESA-G------IPLRGLFIIDTKGVLRQITVNDL 72 (105)
Q Consensus 5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~--~~~-vak~ygv~~~~~-G------~~~ratfiID~~G~V~~~~~~~~ 72 (105)
++.+++|+++. .+++||+++|. ++. +++.|++..... + ...|++||||++|+|++++.|.+
T Consensus 73 ~~~~~~f~~~~-------~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~ 143 (152)
T cd00340 73 NEEIKEFCETN-------YGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTT 143 (152)
T ss_pred HHHHHHHHHHh-------cCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCC
Confidence 46789999651 16899999975 454 567777431100 0 01458999999999999999865
No 38
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.54 E-value=5.4e-07 Score=58.46 Aligned_cols=53 Identities=19% Similarity=0.348 Sum_probs=45.3
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccC
Q psy13875 5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDL 72 (105)
Q Consensus 5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~ 72 (105)
.+.+++|.++. +++||+++|.++++++.|++. ..|++||||++| |+++..|..
T Consensus 61 ~~~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~i~------~~P~~~vid~~g-i~~~~~g~~ 113 (123)
T cd03011 61 DGAVARFMQKK--------GYGFPVINDPDGVISARWGVS------VTPAIVIVDPGG-IVFVTTGVT 113 (123)
T ss_pred HHHHHHHHHHc--------CCCccEEECCCcHHHHhCCCC------cccEEEEEcCCC-eEEEEeccC
Confidence 46788888762 679999999999999999987 369999999999 999888644
No 39
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.46 E-value=4.6e-07 Score=64.06 Aligned_cols=65 Identities=17% Similarity=0.189 Sum_probs=47.1
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875 5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL 84 (105)
Q Consensus 5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~ 84 (105)
++.|++|+++. +++|+.+. .++++++.||+. + .|.+||||++|+|++. +......++++++++
T Consensus 115 ~~~~~~~~~~~--------~~~~~~~~-~~~~i~~~y~v~----~--~P~~~lID~~G~I~~~--g~~~~~~~le~ll~~ 177 (189)
T TIGR02661 115 PAEHRRFLKDH--------ELGGERYV-VSAEIGMAFQVG----K--IPYGVLLDQDGKIRAK--GLTNTREHLESLLEA 177 (189)
T ss_pred HHHHHHHHHhc--------CCCcceee-chhHHHHhccCC----c--cceEEEECCCCeEEEc--cCCCCHHHHHHHHHH
Confidence 56889999772 66777654 568999999986 3 6999999999999985 333333456666655
Q ss_pred HH
Q psy13875 85 VK 86 (105)
Q Consensus 85 l~ 86 (105)
++
T Consensus 178 l~ 179 (189)
T TIGR02661 178 DR 179 (189)
T ss_pred HH
Confidence 53
No 40
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.41 E-value=1.3e-06 Score=62.38 Aligned_cols=73 Identities=11% Similarity=0.091 Sum_probs=46.6
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCceEEeeC--cc----h--------HHhhhCCccccCCcc-ceeEEEECCCCCEEEEEe
Q psy13875 5 DEGDEVWLEDVKQGDGGLGDLKYPLLADF--KK----E--------IATSYGVLIESAGIP-LRGLFIIDTKGVLRQITV 69 (105)
Q Consensus 5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~--~~----~--------vak~ygv~~~~~G~~-~ratfiID~~G~V~~~~~ 69 (105)
++.+++|+++. +++||+++|. ++ . +.+.|+......+++ .++|||||++|+|++.+.
T Consensus 91 ~e~~~~f~~~~--------~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~ 162 (199)
T PTZ00056 91 TKDIRKFNDKN--------KIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFS 162 (199)
T ss_pred HHHHHHHHHHc--------CCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeC
Confidence 46889999762 7899999973 22 2 233444321111111 258999999999999887
Q ss_pred ccCCCCCCHHHHHHHHHhhh
Q psy13875 70 NDLPVGRSVEEVLRLVKAFQ 89 (105)
Q Consensus 70 ~~~~~~~~~~eil~~l~~l~ 89 (105)
+.. +.+++.+.|+.+-
T Consensus 163 g~~----~~~~l~~~I~~ll 178 (199)
T PTZ00056 163 PRT----EPLELEKKIAELL 178 (199)
T ss_pred CCC----CHHHHHHHHHHHH
Confidence 644 4556666666554
No 41
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.36 E-value=1.3e-06 Score=57.91 Aligned_cols=57 Identities=16% Similarity=0.232 Sum_probs=44.4
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCceEEeeCc---chHHhhhCCccccC-------Cc-cceeEEEECCCCCEEEEEe
Q psy13875 5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFK---KEIATSYGVLIESA-------GI-PLRGLFIIDTKGVLRQITV 69 (105)
Q Consensus 5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~---~~vak~ygv~~~~~-------G~-~~ratfiID~~G~V~~~~~ 69 (105)
++.+++|+++. +.+|++|+|.. +.+++.||+..... ++ ..|++||||++|+|++++.
T Consensus 74 ~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 141 (142)
T cd02968 74 PEVLKAYAKAF--------GPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYG 141 (142)
T ss_pred HHHHHHHHHHh--------CCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeec
Confidence 46788888763 57999999975 79999999875321 11 2589999999999999874
No 42
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.33 E-value=2.1e-06 Score=53.39 Aligned_cols=51 Identities=31% Similarity=0.544 Sum_probs=43.3
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEe
Q psy13875 5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69 (105)
Q Consensus 5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~ 69 (105)
++..++|.++. +.+|+++.|.+..+++.||+. ..|++||+|++|+|++.+.
T Consensus 65 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~------~~P~~~l~d~~g~v~~~~~ 115 (116)
T cd02966 65 PAAVKAFLKKY--------GITFPVLLDPDGELAKAYGVR------GLPTTFLIDRDGRIRARHV 115 (116)
T ss_pred HHHHHHHHHHc--------CCCcceEEcCcchHHHhcCcC------ccceEEEECCCCcEEEEec
Confidence 56677777662 579999999999999999986 3699999999999998875
No 43
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.33 E-value=1.6e-06 Score=63.88 Aligned_cols=72 Identities=14% Similarity=0.148 Sum_probs=48.4
Q ss_pred HHHHHHH-HhhhcCCCCCCCCCceEEee--Ccc-hHHhhhCCccccC----C---ccceeEEEECCCCCEEEEEeccCCC
Q psy13875 6 EGDEVWL-EDVKQGDGGLGDLKYPLLAD--FKK-EIATSYGVLIESA----G---IPLRGLFIIDTKGVLRQITVNDLPV 74 (105)
Q Consensus 6 ~sh~~w~-~~~~~~~~~~~~l~fpllsD--~~~-~vak~ygv~~~~~----G---~~~ratfiID~~G~V~~~~~~~~~~ 74 (105)
+..++|+ ++ .+++||+++| .++ .++..|++..... | ...|+|||||++|+|++++.+..
T Consensus 152 ~ei~~f~~~~--------~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~-- 221 (236)
T PLN02399 152 PEIKQFACTR--------FKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTT-- 221 (236)
T ss_pred HHHHHHHHHh--------cCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCC--
Confidence 4677887 34 2789999965 455 5666666421100 1 12589999999999999998754
Q ss_pred CCCHHHHHHHHHhhh
Q psy13875 75 GRSVEEVLRLVKAFQ 89 (105)
Q Consensus 75 ~~~~~eil~~l~~l~ 89 (105)
+.+++.+.|+++.
T Consensus 222 --~~~~le~~I~~lL 234 (236)
T PLN02399 222 --SPFQIEKDIQKLL 234 (236)
T ss_pred --CHHHHHHHHHHHh
Confidence 4567777776653
No 44
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.31 E-value=1.4e-06 Score=61.26 Aligned_cols=61 Identities=20% Similarity=0.362 Sum_probs=38.8
Q ss_pred CCCceEEee--CcchH-HhhhCCcccc-----------CCcc-ceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875 24 DLKYPLLAD--FKKEI-ATSYGVLIES-----------AGIP-LRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF 88 (105)
Q Consensus 24 ~l~fpllsD--~~~~v-ak~ygv~~~~-----------~G~~-~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l 88 (105)
+++||+++| .++.. ++.|+.+.+. .+++ .|++||||++|+|++.+.+.. +.+++.+.|+++
T Consensus 105 ~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~----~~~~l~~~I~~l 180 (183)
T PTZ00256 105 NVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKV----NPNEMIQDIEKL 180 (183)
T ss_pred CCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCC----CHHHHHHHHHHH
Confidence 789999977 55544 4555322111 1222 347899999999999998755 344555555544
No 45
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.08 E-value=1.1e-05 Score=51.64 Aligned_cols=48 Identities=21% Similarity=0.388 Sum_probs=37.4
Q ss_pred hHHHHHHHHhhhcCCCCCCCC-CceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEE
Q psy13875 5 DEGDEVWLEDVKQGDGGLGDL-KYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQIT 68 (105)
Q Consensus 5 ~~sh~~w~~~~~~~~~~~~~l-~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~ 68 (105)
.+.+++|+++. ++ .||.+.| +.++++||+. ..|++||||++|+|++.-
T Consensus 64 ~~~~~~~~~~~--------~~~~~p~~~~--~~~~~~~~~~------~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 64 KAEHQRFLKKH--------GLEAFPYVLS--AELGMAYQVS------KLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred HHHHHHHHHHh--------CCCCCcEEec--HHHHhhcCCC------CcCeEEEECCCCeEEecc
Confidence 45678888763 55 4888764 5689999986 369999999999999864
No 46
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.00 E-value=2.7e-05 Score=63.08 Aligned_cols=51 Identities=25% Similarity=0.384 Sum_probs=43.6
Q ss_pred CceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHH
Q psy13875 26 KYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVK 86 (105)
Q Consensus 26 ~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~ 86 (105)
+||++.|.++++++.||+. .+|++||||++|+|++...|.+ +.+++.+.|+
T Consensus 120 ~~pV~~D~~~~lak~fgV~------giPTt~IIDkdGkIV~~~~G~~----~~eeL~a~Ie 170 (521)
T PRK14018 120 KLPVLTDNGGTLAQSLNIS------VYPSWAIIGKDGDVQRIVKGSI----SEAQALALIR 170 (521)
T ss_pred ccceeccccHHHHHHcCCC------CcCeEEEEcCCCeEEEEEeCCC----CHHHHHHHHH
Confidence 6899999999999999987 3799999999999999999865 4566666665
No 47
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.88 E-value=6.9e-05 Score=53.29 Aligned_cols=60 Identities=7% Similarity=0.096 Sum_probs=44.2
Q ss_pred CCCceEEee-CcchHHhhhCCccccCCccceeEEEECCCCCEEE-EEeccCCCCCCHHHHHHHHHhhhhh
Q psy13875 24 DLKYPLLAD-FKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQ-ITVNDLPVGRSVEEVLRLVKAFQFV 91 (105)
Q Consensus 24 ~l~fpllsD-~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~-~~~~~~~~~~~~~eil~~l~~l~~~ 91 (105)
.+.||++.| ..+.+.+.||+.. ...|+|||||++|+|++ ++.|.+ +.+++.+.++.+...
T Consensus 112 ~~~fPv~~dd~~~~~~~~~g~~~----~~iPttfLId~~G~i~~~~~~G~~----~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 112 DTAFPEALPAPPDVMQTFFPNIP----VATPTTFLVNVNTLEALPLLQGAT----DAAGFMARMDTVLQM 173 (181)
T ss_pred CCCCceEecCchhHHHHHhCCCC----CCCCeEEEEeCCCcEEEEEEECCC----CHHHHHHHHHHHHhh
Confidence 578999996 5677888998521 13799999999999974 788865 456666666665433
No 48
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=97.78 E-value=4.4e-05 Score=52.44 Aligned_cols=49 Identities=20% Similarity=0.488 Sum_probs=36.1
Q ss_pred HHHHHHHHhhhcCCCCCCCCCc---eEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEE
Q psy13875 6 EGDEVWLEDVKQGDGGLGDLKY---PLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQIT 68 (105)
Q Consensus 6 ~sh~~w~~~~~~~~~~~~~l~f---pllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~ 68 (105)
+..++|.++. +++| |+..+..+.++++||+. | +|++||||++|+|+...
T Consensus 78 ~~~~~f~~~~--------~~~~~~~p~~~~~~~~l~~~y~v~----~--iPt~vlId~~G~Vv~~~ 129 (146)
T cd03008 78 QQQESFLKDM--------PKKWLFLPFEDEFRRELEAQFSVE----E--LPTVVVLKPDGDVLAAN 129 (146)
T ss_pred HHHHHHHHHC--------CCCceeecccchHHHHHHHHcCCC----C--CCEEEEECCCCcEEeeC
Confidence 3466777652 4444 44455567999999986 4 79999999999999764
No 49
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.75 E-value=0.00014 Score=63.18 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=44.6
Q ss_pred CCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875 24 DLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA 87 (105)
Q Consensus 24 ~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~ 87 (105)
+++||++.|.++++.+.||+. | .|++||||++|+|++.+.++. ..+++.+.|++
T Consensus 481 ~i~~pvv~D~~~~~~~~~~V~----~--iPt~ilid~~G~iv~~~~G~~----~~~~l~~~l~~ 534 (1057)
T PLN02919 481 NISHPVVNDGDMYLWRELGVS----S--WPTFAVVSPNGKLIAQLSGEG----HRKDLDDLVEA 534 (1057)
T ss_pred CCCccEEECCchHHHHhcCCC----c--cceEEEECCCCeEEEEEeccc----CHHHHHHHHHH
Confidence 789999999999999999987 4 699999999999999988754 34555555544
No 50
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.20 E-value=0.0004 Score=45.54 Aligned_cols=39 Identities=13% Similarity=0.357 Sum_probs=30.2
Q ss_pred CCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEe
Q psy13875 24 DLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69 (105)
Q Consensus 24 ~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~ 69 (105)
.++|+. +|.+..++++||+. + .|++||||++|+|+....
T Consensus 79 ~~~~~~-~~~~~~~~~~~~v~----~--~P~~~lid~~G~i~~~~~ 117 (131)
T cd03009 79 AVPFSD-RERRSRLNRTFKIE----G--IPTLIILDADGEVVTTDA 117 (131)
T ss_pred EcccCC-HHHHHHHHHHcCCC----C--CCEEEEECCCCCEEcccH
Confidence 344544 56668899999987 3 699999999999987654
No 51
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=97.18 E-value=0.0019 Score=41.73 Aligned_cols=56 Identities=23% Similarity=0.362 Sum_probs=44.1
Q ss_pred HHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCcccc----------------------CC----------cccee
Q psy13875 7 GDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIES----------------------AG----------IPLRG 54 (105)
Q Consensus 7 sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~----------------------~G----------~~~ra 54 (105)
+.++|++. ...+|||.+|++.++-+++|+.... .| .....
T Consensus 26 ~~~~f~~~--------~~~p~~ly~D~~~~lY~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~GG 97 (115)
T PF13911_consen 26 GIEKFCEL--------TGFPFPLYVDPERKLYKALGLKRGLKWSLLPPALWSGLSNIVQSAKNGGIPGNKDQGDGWQLGG 97 (115)
T ss_pred HHHHHHhc--------cCCCCcEEEeCcHHHHHHhCCccccccCCCchHHHHHHHHHHHHHHHcCCCCcccCCCceecCe
Confidence 57889855 2789999999999999999986520 01 23678
Q ss_pred EEEECCCCCEEEEEec
Q psy13875 55 LFIIDTKGVLRQITVN 70 (105)
Q Consensus 55 tfiID~~G~V~~~~~~ 70 (105)
+||+|++|+|++.|..
T Consensus 98 ~fv~d~~g~v~~~hr~ 113 (115)
T PF13911_consen 98 TFVFDPGGKVLYEHRD 113 (115)
T ss_pred EEEEcCCCeEEEEEec
Confidence 9999999999999873
No 52
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=96.89 E-value=0.0034 Score=43.32 Aligned_cols=33 Identities=6% Similarity=0.094 Sum_probs=23.2
Q ss_pred cceeEEEECCCCCE-EEEEeccCCCCCCHHHHHHHHHh
Q psy13875 51 PLRGLFIIDTKGVL-RQITVNDLPVGRSVEEVLRLVKA 87 (105)
Q Consensus 51 ~~ratfiID~~G~V-~~~~~~~~~~~~~~~eil~~l~~ 87 (105)
..|++||||++|++ +.++.|.+ +.+++.+.|+.
T Consensus 118 ~iPTt~LID~~G~~i~~~~~G~~----s~~~l~~~I~~ 151 (153)
T TIGR02738 118 VTPATFLVNVNTRKAYPVLQGAV----DEAELANRMDE 151 (153)
T ss_pred CCCeEEEEeCCCCEEEEEeeccc----CHHHHHHHHHH
Confidence 47999999999886 54677755 45555555544
No 53
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=96.82 E-value=0.0019 Score=45.12 Aligned_cols=57 Identities=16% Similarity=0.373 Sum_probs=43.0
Q ss_pred CCCce-EEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHH
Q psy13875 24 DLKYP-LLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVK 86 (105)
Q Consensus 24 ~l~fp-llsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~ 86 (105)
..++. ++.|.+|.+.++|++..+ .-+.+|+|++|+|++..-|.++. .++++++..|+
T Consensus 101 ~~p~s~~vlD~~G~~~~aW~L~~~-----~SaiiVlDK~G~V~F~k~G~Ls~-~Ev~qVi~Ll~ 158 (160)
T PF09695_consen 101 EFPWSQFVLDSNGVVRKAWQLQEE-----SSAIIVLDKQGKVQFVKEGALSP-AEVQQVIALLK 158 (160)
T ss_pred hCCCcEEEEcCCCceeccccCCCC-----CceEEEEcCCccEEEEECCCCCH-HHHHHHHHHHh
Confidence 44666 679999999999998743 35688999999999999887742 24555555554
No 54
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=96.72 E-value=0.0041 Score=40.96 Aligned_cols=30 Identities=13% Similarity=0.344 Sum_probs=24.7
Q ss_pred cchHHhhhCCccccCCccceeEEEECCCCCEEEEEe
Q psy13875 34 KKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69 (105)
Q Consensus 34 ~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~ 69 (105)
.+.+++.||+. | .|++||||++|+|++...
T Consensus 88 ~~~~~~~~~v~----~--iPt~~lid~~G~iv~~~~ 117 (132)
T cd02964 88 RELLEKQFKVE----G--IPTLVVLKPDGDVVTTNA 117 (132)
T ss_pred HHHHHHHcCCC----C--CCEEEEECCCCCEEchhH
Confidence 35788889986 3 699999999999997654
No 55
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=96.62 E-value=0.0015 Score=40.37 Aligned_cols=28 Identities=25% Similarity=0.525 Sum_probs=22.8
Q ss_pred eeCcchHHhhhCCccccCCccceeEEEECCCCCE
Q psy13875 31 ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVL 64 (105)
Q Consensus 31 sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V 64 (105)
.|.+..+.+.|++. ..|+.+|||++|+|
T Consensus 68 ~~~~~~l~~~~~i~------~iP~~~lld~~G~I 95 (95)
T PF13905_consen 68 DDNNSELLKKYGIN------GIPTLVLLDPDGKI 95 (95)
T ss_dssp THHHHHHHHHTT-T------SSSEEEEEETTSBE
T ss_pred cchHHHHHHHCCCC------cCCEEEEECCCCCC
Confidence 34467899999987 47999999999997
No 56
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.012 Score=41.03 Aligned_cols=72 Identities=17% Similarity=0.299 Sum_probs=52.3
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccC--C---ccceeEEEECCCCCEEEEEeccCCCC---C
Q psy13875 5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESA--G---IPLRGLFIIDTKGVLRQITVNDLPVG---R 76 (105)
Q Consensus 5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~--G---~~~ratfiID~~G~V~~~~~~~~~~~---~ 76 (105)
++..+||++.. + ..+ +.-+|+|.++++.|+.|+..+.. | .+.|-+-|| +||+|.+.++.+.... .
T Consensus 84 ~FVm~AWak~~----g-~~~-~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~iE~p~~~~~vS 156 (165)
T COG0678 84 AFVMNAWAKSQ----G-GEG-NIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLFIEPPGDPFTVS 156 (165)
T ss_pred HHHHHHHHHhc----C-CCc-cEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEEEEecCCCCceeec
Confidence 46789999774 2 212 68889999999999999987543 3 368889999 7999999998652211 2
Q ss_pred CHHHHHH
Q psy13875 77 SVEEVLR 83 (105)
Q Consensus 77 ~~~eil~ 83 (105)
+.+.+|+
T Consensus 157 ~a~~mL~ 163 (165)
T COG0678 157 SADTMLA 163 (165)
T ss_pred CHHHHHh
Confidence 4555554
No 57
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=96.37 E-value=0.011 Score=37.42 Aligned_cols=41 Identities=34% Similarity=0.516 Sum_probs=29.8
Q ss_pred chHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHH
Q psy13875 35 KEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLV 85 (105)
Q Consensus 35 ~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l 85 (105)
.++++.||+. | .|+.+++|++|+++++..|-. +.+++++.|
T Consensus 72 ~~l~~~~~v~----g--tPt~~~~d~~G~~v~~~~G~~----~~~~l~~~L 112 (112)
T PF13098_consen 72 KELAQRYGVN----G--TPTIVFLDKDGKIVYRIPGYL----SPEELLKML 112 (112)
T ss_dssp HHHHHHTT------S--SSEEEECTTTSCEEEEEESS------HHHHHHHH
T ss_pred HHHHHHcCCC----c--cCEEEEEcCCCCEEEEecCCC----CHHHHHhhC
Confidence 3688888887 4 699999999999999888754 567776654
No 58
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=96.09 E-value=0.031 Score=37.75 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=39.0
Q ss_pred CCCceEE-eeCc--chHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875 24 DLKYPLL-ADFK--KEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ 89 (105)
Q Consensus 24 ~l~fpll-sD~~--~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~ 89 (105)
.+.|-.+ .|.+ ..+++.|++. | .|+++++|++|+++..+.|.. ..+++.+.|+++.
T Consensus 52 ~~~~v~v~vd~~~~~~~~~~~~V~----~--iPt~v~~~~~G~~v~~~~G~~----~~~~l~~~l~~l~ 110 (142)
T cd02950 52 QVNFVMLNVDNPKWLPEIDRYRVD----G--IPHFVFLDREGNEEGQSIGLQ----PKQVLAQNLDALV 110 (142)
T ss_pred CeeEEEEEcCCcccHHHHHHcCCC----C--CCEEEEECCCCCEEEEEeCCC----CHHHHHHHHHHHH
Confidence 3455544 2332 3688999987 3 799999999999999998754 3555666665543
No 59
>KOG0541|consensus
Probab=96.06 E-value=0.014 Score=40.82 Aligned_cols=62 Identities=16% Similarity=0.251 Sum_probs=47.7
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccC----C-ccceeEEEECCCCCEEEEEeccCC
Q psy13875 5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESA----G-IPLRGLFIIDTKGVLRQITVNDLP 73 (105)
Q Consensus 5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~----G-~~~ratfiID~~G~V~~~~~~~~~ 73 (105)
|+..++|.+.+.. +-..-+++|++++..+++|+..+.. | ...|-..++ .||+|.+..+.+..
T Consensus 90 pFv~~aW~k~~g~------~~~V~f~aD~~g~ftk~lgleld~~d~~~g~RS~R~a~vv-engkV~~~nvE~~g 156 (171)
T KOG0541|consen 90 PFVMKAWAKSLGA------NDHVKFVADPAGEFTKSLGLELDLSDKLLGVRSRRYALVV-ENGKVTVVNVEEGG 156 (171)
T ss_pred HHHHHHHHhhcCc------cceEEEEecCCCceeeeccceeeeccccCccccccEEEEE-eCCeEEEEEeccCC
Confidence 6788999987521 2356789999999999999876532 2 357888888 69999999986543
No 60
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=95.94 E-value=0.022 Score=36.99 Aligned_cols=45 Identities=24% Similarity=0.246 Sum_probs=34.3
Q ss_pred chHHhhhCCccccCCccceeEEEECCC-CCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875 35 KEIATSYGVLIESAGIPLRGLFIIDTK-GVLRQITVNDLPVGRSVEEVLRLVKAFQ 89 (105)
Q Consensus 35 ~~vak~ygv~~~~~G~~~ratfiID~~-G~V~~~~~~~~~~~~~~~eil~~l~~l~ 89 (105)
..++++|++. ..|+++++|++ |+++....|.. ..+++.+.|+.+.
T Consensus 74 ~~l~~~~~v~------~~Pt~~~~~~~gg~~~~~~~G~~----~~~~~~~~l~~~~ 119 (125)
T cd02951 74 KELARKYRVR------FTPTVIFLDPEGGKEIARLPGYL----PPDEFLAYLEYVQ 119 (125)
T ss_pred HHHHHHcCCc------cccEEEEEcCCCCceeEEecCCC----CHHHHHHHHHHHH
Confidence 5788999986 36999999999 89999888754 3556666665543
No 61
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=95.87 E-value=0.022 Score=39.87 Aligned_cols=53 Identities=17% Similarity=0.367 Sum_probs=40.6
Q ss_pred EEeeCcchHHh-hhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875 29 LLADFKKEIAT-SYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF 88 (105)
Q Consensus 29 llsD~~~~vak-~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l 88 (105)
++-|.+| +++ +|++..+ .-+.+++|++|+|.++.-|..+ ..++++++..|.+|
T Consensus 129 ~vlD~~g-vak~AWqL~e~-----~SaivVlDk~G~VkfvkeGaLt-~aevQ~Vi~ll~~l 182 (184)
T COG3054 129 FVLDSNG-VAKNAWQLKEE-----SSAVVVLDKDGRVKFVKEGALT-QAEVQQVIDLLQKL 182 (184)
T ss_pred eEEccch-hhhhhhccccc-----cceEEEEcCCCcEEEEecCCcc-HHHHHHHHHHHHHh
Confidence 5678888 666 9998743 3788999999999999987664 34677777776654
No 62
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=95.57 E-value=0.067 Score=37.90 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=22.5
Q ss_pred EEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875 55 LFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF 88 (105)
Q Consensus 55 tfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l 88 (105)
-||||++|+|+.++-.. ..+...++.+.|+++
T Consensus 149 KFLv~~~G~vv~r~~~~--~~p~~~~i~~~i~~~ 180 (183)
T PRK10606 149 KFLVGRDGQVIQRFSPD--MTPEDPIVMESIKLA 180 (183)
T ss_pred EEEECCCCcEEEEECCC--CCCCHHHHHHHHHHH
Confidence 89999999999998532 234444566666554
No 63
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=95.31 E-value=0.1 Score=38.70 Aligned_cols=56 Identities=29% Similarity=0.482 Sum_probs=42.8
Q ss_pred CCCceEEeeC-cchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875 24 DLKYPLLADF-KKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF 88 (105)
Q Consensus 24 ~l~fpllsD~-~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l 88 (105)
...+|++.|. ++...++||.. +.| .||| .+|+|.|.= ++.+.+-+.+|+.++|+++
T Consensus 180 ~~~~pi~vD~mdN~~~~~YgA~------PeR-lyIi-~~gkv~Y~G-g~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 180 FPQCPIVVDTMDNNFNKAYGAL------PER-LYII-QDGKVVYKG-GPGPFGYSPEELREWLEKY 236 (237)
T ss_pred CCCCCEEEEccCCHHHHHhCCC------cce-EEEE-ECCEEEEeC-CCCCCcCCHHHHHHHHHhc
Confidence 3578999997 89999999987 345 4555 599998864 3444566899999999875
No 64
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=95.07 E-value=0.064 Score=40.16 Aligned_cols=47 Identities=13% Similarity=0.167 Sum_probs=33.9
Q ss_pred CcchHHhhhCCccccCCccceeEEEECC-CCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875 33 FKKEIATSYGVLIESAGIPLRGLFIIDT-KGVLRQITVNDLPVGRSVEEVLRLVKAFQ 89 (105)
Q Consensus 33 ~~~~vak~ygv~~~~~G~~~ratfiID~-~G~V~~~~~~~~~~~~~~~eil~~l~~l~ 89 (105)
.+..+++.||+. ..|++||+|+ .|+|..+..|.+ +.+++.+.+..+.
T Consensus 217 ~d~~la~~~gV~------~vPtl~Lv~~~~~~v~~v~~G~~----s~~eL~~~i~~~a 264 (271)
T TIGR02740 217 PDAGQAQQLKIR------TVPAVFLADPDPNQFTPIGFGVM----SADELVDRILLAA 264 (271)
T ss_pred CCHHHHHHcCCC------cCCeEEEEECCCCEEEEEEeCCC----CHHHHHHHHHHHh
Confidence 345688999986 3799999999 567766666654 5667776665543
No 65
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=94.92 E-value=0.072 Score=35.34 Aligned_cols=53 Identities=6% Similarity=0.225 Sum_probs=40.1
Q ss_pred CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875 24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF 88 (105)
Q Consensus 24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l 88 (105)
++.|--+ .|.+.++|++||+. | +|+.+++ ++|+++. +.|. ++.+.+.++|++|
T Consensus 65 ~v~~~kVD~d~~~~La~~~~I~----~--iPTl~lf-k~G~~v~-~~G~----~~~~~l~~~l~~~ 118 (120)
T cd03065 65 GIGFGLVDSKKDAKVAKKLGLD----E--EDSIYVF-KDDEVIE-YDGE----FAADTLVEFLLDL 118 (120)
T ss_pred CCEEEEEeCCCCHHHHHHcCCc----c--ccEEEEE-ECCEEEE-eeCC----CCHHHHHHHHHHH
Confidence 4555544 67789999999997 4 6988888 6999876 6653 3678888888765
No 66
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=94.74 E-value=0.084 Score=32.36 Aligned_cols=44 Identities=18% Similarity=0.300 Sum_probs=33.5
Q ss_pred eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHH
Q psy13875 31 ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLV 85 (105)
Q Consensus 31 sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l 85 (105)
.|.+..+++.|++. ..|++++++ +|+++..+.|.. +.+++..+|
T Consensus 52 ~~~~~~l~~~~~i~------~~Pt~~~~~-~g~~~~~~~g~~----~~~~l~~~l 95 (96)
T cd02956 52 CDAQPQIAQQFGVQ------ALPTVYLFA-AGQPVDGFQGAQ----PEEQLRQML 95 (96)
T ss_pred ccCCHHHHHHcCCC------CCCEEEEEe-CCEEeeeecCCC----CHHHHHHHh
Confidence 56778999999987 369999996 999887776633 556666554
No 67
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=94.35 E-value=0.061 Score=33.69 Aligned_cols=42 Identities=12% Similarity=0.094 Sum_probs=32.3
Q ss_pred cchHHhhhCCccccCCccceeEEEECC-CCCEEEEEeccCCCCCCHHHHHHHH
Q psy13875 34 KKEIATSYGVLIESAGIPLRGLFIIDT-KGVLRQITVNDLPVGRSVEEVLRLV 85 (105)
Q Consensus 34 ~~~vak~ygv~~~~~G~~~ratfiID~-~G~V~~~~~~~~~~~~~~~eil~~l 85 (105)
...++++||+. ..|+++++++ +|++...+.|.. +.+++.+.|
T Consensus 61 ~~~~~~~~~i~------~~Pti~~~~~~~g~~~~~~~G~~----~~~~l~~~l 103 (104)
T cd02953 61 ITALLKRFGVF------GPPTYLFYGPGGEPEPLRLPGFL----TADEFLEAL 103 (104)
T ss_pred HHHHHHHcCCC------CCCEEEEECCCCCCCCccccccc----CHHHHHHHh
Confidence 35788999987 4799999999 899888776643 566666655
No 68
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=94.33 E-value=0.13 Score=32.93 Aligned_cols=54 Identities=13% Similarity=0.229 Sum_probs=38.2
Q ss_pred CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875 24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF 88 (105)
Q Consensus 24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l 88 (105)
++.|--+ .|.+..++++||+. ..|+++++ ++|+++....|. .+.+++.++|++|
T Consensus 57 ~v~~~~vd~d~~~~l~~~~~V~------~~Pt~~i~-~~g~~~~~~~G~----~~~~~l~~~i~~~ 111 (111)
T cd02963 57 GVGIATVNAGHERRLARKLGAH------SVPAIVGI-INGQVTFYHDSS----FTKQHVVDFVRKL 111 (111)
T ss_pred CceEEEEeccccHHHHHHcCCc------cCCEEEEE-ECCEEEEEecCC----CCHHHHHHHHhcC
Confidence 3454433 46677999999987 46999999 599887766653 3567777777654
No 69
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=94.10 E-value=0.16 Score=34.43 Aligned_cols=54 Identities=15% Similarity=0.298 Sum_probs=41.0
Q ss_pred CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875 25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ 89 (105)
Q Consensus 25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~ 89 (105)
+.|-.+ .|.+..++.+||+. .+|+.++. ++|+++....|.. +.+++++.|+++-
T Consensus 70 v~~akVDiD~~~~LA~~fgV~------siPTLl~F-kdGk~v~~i~G~~----~k~~l~~~I~~~L 124 (132)
T PRK11509 70 WQVAIADLEQSEAIGDRFGVF------RFPATLVF-TGGNYRGVLNGIH----PWAELINLMRGLV 124 (132)
T ss_pred eEEEEEECCCCHHHHHHcCCc------cCCEEEEE-ECCEEEEEEeCcC----CHHHHHHHHHHHh
Confidence 455554 56678999999987 36988888 8999999888743 5688888887653
No 70
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=93.91 E-value=0.15 Score=32.04 Aligned_cols=51 Identities=14% Similarity=0.178 Sum_probs=36.1
Q ss_pred CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875 25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF 88 (105)
Q Consensus 25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l 88 (105)
+.|-.+ .| +.+++++|++. + .| ||++-++|+++....|. +.++++++|++|
T Consensus 51 ~~~~~vd~d-~~~~~~~~~v~----~--~P-t~~~~~~g~~~~~~~G~-----~~~~~~~~i~~~ 102 (102)
T cd02948 51 LHFATAEAD-TIDTLKRYRGK----C--EP-TFLFYKNGELVAVIRGA-----NAPLLNKTITEL 102 (102)
T ss_pred EEEEEEeCC-CHHHHHHcCCC----c--Cc-EEEEEECCEEEEEEecC-----ChHHHHHHHhhC
Confidence 445544 34 67889999987 3 57 56666899999888762 567788777654
No 71
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=93.82 E-value=0.25 Score=31.64 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=34.3
Q ss_pred chHHhhhCCccccCCccceeEEEECC-CCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875 35 KEIATSYGVLIESAGIPLRGLFIIDT-KGVLRQITVNDLPVGRSVEEVLRLVKAF 88 (105)
Q Consensus 35 ~~vak~ygv~~~~~G~~~ratfiID~-~G~V~~~~~~~~~~~~~~~eil~~l~~l 88 (105)
..+++.|++. + .|+.++||+ +|+++....|.. +.++++..|+..
T Consensus 66 ~~~~~~~~~~----~--~P~~~~i~~~~g~~l~~~~G~~----~~~~f~~~L~~~ 110 (114)
T cd02958 66 QRFLQSYKVD----K--YPHIAIIDPRTGEVLKVWSGNI----TPEDLLSQLIEF 110 (114)
T ss_pred HHHHHHhCcc----C--CCeEEEEeCccCcEeEEEcCCC----CHHHHHHHHHHH
Confidence 3677888875 3 699999999 899999887754 577787777653
No 72
>PRK09381 trxA thioredoxin; Provisional
Probab=93.48 E-value=0.34 Score=30.37 Aligned_cols=46 Identities=22% Similarity=0.355 Sum_probs=34.1
Q ss_pred eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875 31 ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA 87 (105)
Q Consensus 31 sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~ 87 (105)
.|.+..+++.|++. ..|+.+++ ++|++++...|.. +.+++...|++
T Consensus 61 ~~~~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~i~~ 106 (109)
T PRK09381 61 IDQNPGTAPKYGIR------GIPTLLLF-KNGEVAATKVGAL----SKGQLKEFLDA 106 (109)
T ss_pred CCCChhHHHhCCCC------cCCEEEEE-eCCeEEEEecCCC----CHHHHHHHHHH
Confidence 56667888999987 46988888 7999998887643 45666666654
No 73
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=93.21 E-value=0.28 Score=29.88 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=33.8
Q ss_pred eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875 31 ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA 87 (105)
Q Consensus 31 sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~ 87 (105)
.|.+..+++.||+. + .|+.+++++++. ...+.|. .+.+++..+|++
T Consensus 55 ~~~~~~~~~~~~i~----~--~P~~~~~~~~~~-~~~~~g~----~~~~~l~~~i~~ 100 (102)
T TIGR01126 55 ATAEKDLASRFGVS----G--FPTIKFFPKGKK-PVDYEGG----RDLEAIVEFVNE 100 (102)
T ss_pred ccchHHHHHhCCCC----c--CCEEEEecCCCc-ceeecCC----CCHHHHHHHHHh
Confidence 55678999999987 3 699999998887 4455543 357777777764
No 74
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=92.97 E-value=0.37 Score=29.73 Aligned_cols=50 Identities=12% Similarity=0.263 Sum_probs=33.9
Q ss_pred CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHH
Q psy13875 25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVK 86 (105)
Q Consensus 25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~ 86 (105)
+.|--+ .|.+..++++|++. ..|+.+++ ++|++ ..+.| .++.+++.++|+
T Consensus 50 v~~~~vd~~~~~~~~~~~~i~------~~Pt~~~~-~~g~~-~~~~G----~~~~~~l~~~i~ 100 (101)
T cd02994 50 INVAKVDVTQEPGLSGRFFVT------ALPTIYHA-KDGVF-RRYQG----PRDKEDLISFIE 100 (101)
T ss_pred eEEEEEEccCCHhHHHHcCCc------ccCEEEEe-CCCCE-EEecC----CCCHHHHHHHHh
Confidence 343333 45667899999987 36998887 88986 45554 336677777664
No 75
>PRK10996 thioredoxin 2; Provisional
Probab=92.71 E-value=0.38 Score=32.14 Aligned_cols=46 Identities=7% Similarity=0.234 Sum_probs=34.3
Q ss_pred eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875 31 ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA 87 (105)
Q Consensus 31 sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~ 87 (105)
.|.+..++++||+. | .|+.+++ ++|+++..+.|.. +.+++.++|++
T Consensus 92 ~~~~~~l~~~~~V~----~--~Ptlii~-~~G~~v~~~~G~~----~~e~l~~~l~~ 137 (139)
T PRK10996 92 TEAERELSARFRIR----S--IPTIMIF-KNGQVVDMLNGAV----PKAPFDSWLNE 137 (139)
T ss_pred CCCCHHHHHhcCCC----c--cCEEEEE-ECCEEEEEEcCCC----CHHHHHHHHHH
Confidence 45568999999997 4 5887766 5999998887643 46667777765
No 76
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=92.69 E-value=0.44 Score=28.78 Aligned_cols=53 Identities=23% Similarity=0.402 Sum_probs=37.4
Q ss_pred CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875 24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA 87 (105)
Q Consensus 24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~ 87 (105)
++.|-.+ .|.+..+++.||+. ..|+.+++ ++|++.....|.. +.+++.++|++
T Consensus 46 ~~~~~~vd~~~~~~~~~~~~v~------~~P~~~~~-~~g~~~~~~~g~~----~~~~l~~~l~~ 99 (101)
T TIGR01068 46 KVKFVKLNVDENPDIAAKYGIR------SIPTLLLF-KNGKEVDRSVGAL----PKAALKQLINK 99 (101)
T ss_pred CeEEEEEECCCCHHHHHHcCCC------cCCEEEEE-eCCcEeeeecCCC----CHHHHHHHHHh
Confidence 3555544 45677899999987 47999999 6888877666533 56677776654
No 77
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=92.13 E-value=0.27 Score=36.61 Aligned_cols=56 Identities=16% Similarity=0.283 Sum_probs=36.3
Q ss_pred CceEEeeC--cchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHH
Q psy13875 26 KYPLLADF--KKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVK 86 (105)
Q Consensus 26 ~fpllsD~--~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~ 86 (105)
.|=++.+. ...+-+.+|+.+.. .--+||||.+|+||+.-.|..+ ....+.+.+.++
T Consensus 193 ~Yf~~~~~~~~~~iRe~Lgi~N~~----~GYvyLVD~~grIRWagsG~At-~~E~~~L~k~~~ 250 (252)
T PF05176_consen 193 RYFIVYRGQLSDDIREALGINNSY----VGYVYLVDPNGRIRWAGSGPAT-PEELESLWKCVK 250 (252)
T ss_pred eEEEEeCCcccHHHHHHhCCCCCC----cCeEEEECCCCeEEeCccCCCC-HHHHHHHHHHHh
Confidence 45454433 56788899988653 4569999999999998776442 223344444443
No 78
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=92.05 E-value=0.3 Score=33.95 Aligned_cols=59 Identities=20% Similarity=0.202 Sum_probs=38.3
Q ss_pred chHHHHHHHHhhhcCCCCCCCCCceEEee---CcchHHhhhCCccccC--------C--ccceeEEEECCCCCEEEEEec
Q psy13875 4 VDEGDEVWLEDVKQGDGGLGDLKYPLLAD---FKKEIATSYGVLIESA--------G--IPLRGLFIIDTKGVLRQITVN 70 (105)
Q Consensus 4 ~~~sh~~w~~~~~~~~~~~~~l~fpllsD---~~~~vak~ygv~~~~~--------G--~~~ratfiID~~G~V~~~~~~ 70 (105)
+|+..++|++.. +.+|..+.- .-.++++.|++..... + .-.-.+||||++|+|+.++.+
T Consensus 102 Tp~~L~~Y~~~~--------~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 102 TPEVLKKYAKKF--------GPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp -HHHHHHHHHCH--------TTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred CHHHHHHHHHhc--------CCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence 577889999764 334444432 2357888998875310 1 135689999999999998853
No 79
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=92.04 E-value=0.19 Score=30.12 Aligned_cols=51 Identities=10% Similarity=0.173 Sum_probs=35.1
Q ss_pred CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875 24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL 84 (105)
Q Consensus 24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~ 84 (105)
++.|-.+ .|.+..+++.||+. ..|+.++++++|.....+.+. .+.++++++
T Consensus 49 ~~~~~~v~~~~~~~~~~~~~i~------~~Pt~~~~~~~~~~~~~~~g~----~~~~~i~~~ 100 (101)
T cd02961 49 KVVVAKVDCTANNDLCSEYGVR------GYPTIKLFPNGSKEPVKYEGP----RTLESLVEF 100 (101)
T ss_pred ceEEEEeeccchHHHHHhCCCC------CCCEEEEEcCCCcccccCCCC----cCHHHHHhh
Confidence 4555555 45568999999986 369999999887555544432 367776654
No 80
>PF13728 TraF: F plasmid transfer operon protein
Probab=91.41 E-value=1.2 Score=32.23 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=28.9
Q ss_pred cchHHhhhCCccccCCccceeEEEECCCC-CEEEEEeccCCCCCCHHHHHHH
Q psy13875 34 KKEIATSYGVLIESAGIPLRGLFIIDTKG-VLRQITVNDLPVGRSVEEVLRL 84 (105)
Q Consensus 34 ~~~vak~ygv~~~~~G~~~ratfiID~~G-~V~~~~~~~~~~~~~~~eil~~ 84 (105)
+..+++.||+. ..|++|||++++ ++.-+-.|.+ +.+++++.
T Consensus 172 ~~g~~~~l~v~------~~Pal~Lv~~~~~~~~pv~~G~~----s~~~L~~r 213 (215)
T PF13728_consen 172 DPGQAKRLGVK------VTPALFLVNPNTKKWYPVSQGFM----SLDELEDR 213 (215)
T ss_pred CHHHHHHcCCC------cCCEEEEEECCCCeEEEEeeecC----CHHHHHHh
Confidence 56788889886 579999999998 5444444544 56666543
No 81
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=91.39 E-value=0.48 Score=28.99 Aligned_cols=42 Identities=10% Similarity=0.170 Sum_probs=30.1
Q ss_pred eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHH
Q psy13875 31 ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR 83 (105)
Q Consensus 31 sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~ 83 (105)
.|.+..+++.|++. ..|+.+++ ++|+++..+.|.. +.+++.+
T Consensus 59 ~~~~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~G~~----~~~~l~~ 100 (102)
T cd03005 59 CTQHRELCSEFQVR------GYPTLLLF-KDGEKVDKYKGTR----DLDSLKE 100 (102)
T ss_pred CCCChhhHhhcCCC------cCCEEEEE-eCCCeeeEeeCCC----CHHHHHh
Confidence 45567899999986 36988888 7888877777643 4555443
No 82
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=91.25 E-value=0.69 Score=33.27 Aligned_cols=74 Identities=22% Similarity=0.244 Sum_probs=47.0
Q ss_pred chHHHHHHHH-hhhcCCCCCCCCCceEEe---eCcchHHhhhCCccc---cC----C--ccceeEEEECCCCCEEEEEec
Q psy13875 4 VDEGDEVWLE-DVKQGDGGLGDLKYPLLA---DFKKEIATSYGVLIE---SA----G--IPLRGLFIIDTKGVLRQITVN 70 (105)
Q Consensus 4 ~~~sh~~w~~-~~~~~~~~~~~l~fplls---D~~~~vak~ygv~~~---~~----G--~~~ratfiID~~G~V~~~~~~ 70 (105)
+++..+++.+ .. .-.+--+. +...+++++|++... .. . .-.-..|+||++|+++..+.+
T Consensus 118 tp~~lk~Y~~~~~--------~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~ 189 (207)
T COG1999 118 TPEVLKKYAELNF--------DPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDY 189 (207)
T ss_pred CHHHHHHHhcccC--------CCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecC
Confidence 4566677775 21 22333333 334688999999841 11 1 125678999999999988865
Q ss_pred cCCCCCCHHHHHHHHHhhh
Q psy13875 71 DLPVGRSVEEVLRLVKAFQ 89 (105)
Q Consensus 71 ~~~~~~~~~eil~~l~~l~ 89 (105)
.. ..+++++.|+.+-
T Consensus 190 ~~----~~~~i~~~l~~l~ 204 (207)
T COG1999 190 GE----PPEEIAADLKKLL 204 (207)
T ss_pred CC----ChHHHHHHHHHHh
Confidence 32 3788888887754
No 83
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=90.64 E-value=0.9 Score=28.52 Aligned_cols=51 Identities=16% Similarity=0.192 Sum_probs=33.3
Q ss_pred CCCceEE-eeCc---chHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHH
Q psy13875 24 DLKYPLL-ADFK---KEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVK 86 (105)
Q Consensus 24 ~l~fpll-sD~~---~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~ 86 (105)
++.|-.+ .|.+ ..+++.|++. + .|+ |++-++|+++..+.|. +.+++.+.+.
T Consensus 46 ~v~~~~vd~d~~~~~~~l~~~~~V~----~--~Pt-~~~~~~G~~v~~~~G~-----~~~~l~~~~~ 100 (103)
T cd02985 46 DVVFLLVNGDENDSTMELCRREKII----E--VPH-FLFYKDGEKIHEEEGI-----GPDELIGDVL 100 (103)
T ss_pred CCEEEEEECCCChHHHHHHHHcCCC----c--CCE-EEEEeCCeEEEEEeCC-----CHHHHHHHHH
Confidence 4555433 2333 3789999987 4 576 5555999999888763 4566665553
No 84
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=90.44 E-value=0.8 Score=28.25 Aligned_cols=44 Identities=16% Similarity=0.117 Sum_probs=30.9
Q ss_pred eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHH
Q psy13875 31 ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLV 85 (105)
Q Consensus 31 sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l 85 (105)
.|.+.++++.||+. ..|+.++++ +|+++....+.. ..+++.++|
T Consensus 53 ~d~~~~l~~~~~v~------~vPt~~i~~-~g~~v~~~~g~~----~~~~~~~~l 96 (97)
T cd02949 53 IDEDQEIAEAAGIM------GTPTVQFFK-DKELVKEISGVK----MKSEYREFI 96 (97)
T ss_pred CCCCHHHHHHCCCe------eccEEEEEE-CCeEEEEEeCCc----cHHHHHHhh
Confidence 34567899999986 369999994 899988777632 345554443
No 85
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=90.15 E-value=0.41 Score=39.38 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=34.3
Q ss_pred chHHhhhCCccccCCccceeEEEECCCCCEE--EEEeccCCCCCCHHHHHHHHHhhh
Q psy13875 35 KEIATSYGVLIESAGIPLRGLFIIDTKGVLR--QITVNDLPVGRSVEEVLRLVKAFQ 89 (105)
Q Consensus 35 ~~vak~ygv~~~~~G~~~ratfiID~~G~V~--~~~~~~~~~~~~~~eil~~l~~l~ 89 (105)
.+++++||+. | .|+.+++|++|+++ ..+.+. .+.+++++.|++++
T Consensus 524 ~~l~~~~~v~----g--~Pt~~~~~~~G~~i~~~r~~G~----~~~~~f~~~L~~~~ 570 (571)
T PRK00293 524 VALLKHYNVL----G--LPTILFFDAQGQEIPDARVTGF----MDAAAFAAHLRQLQ 570 (571)
T ss_pred HHHHHHcCCC----C--CCEEEEECCCCCCcccccccCC----CCHHHHHHHHHHhc
Confidence 5788999987 4 69999999999985 344443 36788888887754
No 86
>KOG0910|consensus
Probab=90.15 E-value=0.7 Score=32.05 Aligned_cols=53 Identities=19% Similarity=0.286 Sum_probs=39.5
Q ss_pred CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875 24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA 87 (105)
Q Consensus 24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~ 87 (105)
.+.|--+ .|.+.+++..|++. +.|+++++ ++|..+...+|.. +.+.+...|++
T Consensus 93 ~~k~~kvdtD~~~ela~~Y~I~------avPtvlvf-knGe~~d~~vG~~----~~~~l~~~i~k 146 (150)
T KOG0910|consen 93 KFKLYKVDTDEHPELAEDYEIS------AVPTVLVF-KNGEKVDRFVGAV----PKEQLRSLIKK 146 (150)
T ss_pred eEEEEEEccccccchHhhccee------eeeEEEEE-ECCEEeeeecccC----CHHHHHHHHHH
Confidence 5565544 77888999999987 57999999 7999998888754 34555555554
No 87
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=89.94 E-value=1.8 Score=28.68 Aligned_cols=36 Identities=6% Similarity=-0.253 Sum_probs=26.0
Q ss_pred ceeEEEECCCCCEEEEEeccC----CCCCCHHHHHHHHHh
Q psy13875 52 LRGLFIIDTKGVLRQITVNDL----PVGRSVEEVLRLVKA 87 (105)
Q Consensus 52 ~ratfiID~~G~V~~~~~~~~----~~~~~~~eil~~l~~ 87 (105)
.|+++++|++|++++...+-. ..+....++++.++.
T Consensus 81 ~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (124)
T cd02955 81 WPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIRE 120 (124)
T ss_pred CCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHHH
Confidence 699999999999999886532 123456667766654
No 88
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=89.80 E-value=0.68 Score=30.41 Aligned_cols=45 Identities=11% Similarity=0.116 Sum_probs=34.6
Q ss_pred hHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875 36 EIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ 89 (105)
Q Consensus 36 ~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~ 89 (105)
.+.+.|++.. ..=+.+||++||.|...+-.++ +.+++.+.|+++.
T Consensus 68 ~lr~~l~~~~-----~~f~~vLiGKDG~vK~r~~~p~----~~~~lf~~ID~MP 112 (118)
T PF13778_consen 68 ALRKRLRIPP-----GGFTVVLIGKDGGVKLRWPEPI----DPEELFDTIDAMP 112 (118)
T ss_pred HHHHHhCCCC-----CceEEEEEeCCCcEEEecCCCC----CHHHHHHHHhCCc
Confidence 5666777652 1357899999999999875444 7999999999875
No 89
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=89.72 E-value=0.7 Score=32.34 Aligned_cols=72 Identities=15% Similarity=0.185 Sum_probs=40.1
Q ss_pred HHHHHHHHhhhcCCCCCCCCCceEEee--CcchHH-hhhCCccccC-----Ccc---ceeEEEECCCCCEEEEEeccCCC
Q psy13875 6 EGDEVWLEDVKQGDGGLGDLKYPLLAD--FKKEIA-TSYGVLIESA-----GIP---LRGLFIIDTKGVLRQITVNDLPV 74 (105)
Q Consensus 6 ~sh~~w~~~~~~~~~~~~~l~fpllsD--~~~~va-k~ygv~~~~~-----G~~---~ratfiID~~G~V~~~~~~~~~~ 74 (105)
+..++||+.. .+++|||++= -+|+=+ =.|.-+.... |-. .=+-||||++|+|+.++....
T Consensus 77 eEI~~fC~~~-------YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t-- 147 (162)
T COG0386 77 EEIAKFCQLN-------YGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKT-- 147 (162)
T ss_pred HHHHHHHHhc-------cCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCC--
Confidence 4567888652 3889999864 344222 1221111110 111 336799999999999996322
Q ss_pred CCCHHHHHHHHHhh
Q psy13875 75 GRSVEEVLRLVKAF 88 (105)
Q Consensus 75 ~~~~~eil~~l~~l 88 (105)
..+++...|+++
T Consensus 148 --~P~d~~~~Ie~l 159 (162)
T COG0386 148 --KPEDIELAIEKL 159 (162)
T ss_pred --ChhhHHHHHHHH
Confidence 334444455554
No 90
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=89.45 E-value=0.56 Score=29.44 Aligned_cols=50 Identities=20% Similarity=0.300 Sum_probs=34.8
Q ss_pred CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEE-EEEeccCCCCCCHHHHHHH
Q psy13875 24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLR-QITVNDLPVGRSVEEVLRL 84 (105)
Q Consensus 24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~-~~~~~~~~~~~~~~eil~~ 84 (105)
.+.|--+ +|.+..++++||+. ..|+.++. ++|++. ..+.| .++.+++.++
T Consensus 56 ~~~~~~vd~d~~~~l~~~~~v~------~~Ptl~~~-~~g~~~~~~~~g----~~~~~~l~~f 107 (108)
T cd02996 56 KVVWGKVDCDKESDIADRYRIN------KYPTLKLF-RNGMMMKREYRG----QRSVEALAEF 107 (108)
T ss_pred cEEEEEEECCCCHHHHHhCCCC------cCCEEEEE-eCCcCcceecCC----CCCHHHHHhh
Confidence 3555433 78889999999997 46999888 788854 33333 4567777655
No 91
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=88.61 E-value=1.7 Score=26.21 Aligned_cols=53 Identities=19% Similarity=0.394 Sum_probs=37.2
Q ss_pred CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875 24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA 87 (105)
Q Consensus 24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~ 87 (105)
++.|--+ .|.+..+++.|++. ..|+.+++ .+|+....+.+. .+.+++.++|++
T Consensus 49 ~v~~~~vd~~~~~~l~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~i~~ 102 (103)
T PF00085_consen 49 NVKFAKVDCDENKELCKKYGVK------SVPTIIFF-KNGKEVKRYNGP----RNAESLIEFIEK 102 (103)
T ss_dssp TSEEEEEETTTSHHHHHHTTCS------SSSEEEEE-ETTEEEEEEESS----SSHHHHHHHHHH
T ss_pred ccccchhhhhccchhhhccCCC------CCCEEEEE-ECCcEEEEEECC----CCHHHHHHHHHc
Confidence 3444444 34457899999987 36998888 677777767654 378888888764
No 92
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=88.58 E-value=0.76 Score=28.45 Aligned_cols=52 Identities=4% Similarity=-0.012 Sum_probs=35.2
Q ss_pred CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875 24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL 84 (105)
Q Consensus 24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~ 84 (105)
.+.|--+ .|.+.++++.||+. ..|+.+++...|+....+.|..+ +.+++.++
T Consensus 51 ~~~~~~vd~~~~~~~~~~~~i~------~~Pt~~~~~~g~~~~~~~~G~~~---~~~~l~~~ 103 (104)
T cd03004 51 KVKVGSVDCQKYESLCQQANIR------AYPTIRLYPGNASKYHSYNGWHR---DADSILEF 103 (104)
T ss_pred CcEEEEEECCchHHHHHHcCCC------cccEEEEEcCCCCCceEccCCCC---CHHHHHhh
Confidence 3455333 56678999999987 36999999776687777766431 35666544
No 93
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=88.03 E-value=2.1 Score=28.17 Aligned_cols=51 Identities=8% Similarity=0.103 Sum_probs=37.2
Q ss_pred eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCC------CCCHHHHHHHHHhh
Q psy13875 31 ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPV------GRSVEEVLRLVKAF 88 (105)
Q Consensus 31 sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~------~~~~~eil~~l~~l 88 (105)
.|.+.++++.||+. .+|+.+++ ++|+++.+..|..+. -.+-+++++.++-+
T Consensus 54 vD~~~~la~~~~V~------~iPTf~~f-k~G~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02954 54 IDEVPDFNKMYELY------DPPTVMFF-FRNKHMKIDLGTGNNNKINWVFEDKQEFIDIIETI 110 (114)
T ss_pred CCCCHHHHHHcCCC------CCCEEEEE-ECCEEEEEEcCCCCCceEEEecCcHHHHHHHHHHH
Confidence 66778999999998 36887777 799999999875422 13556666666543
No 94
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=87.91 E-value=0.96 Score=28.06 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=29.9
Q ss_pred cchHHhhhCCccccCCccceeEEEECCCCC----EEEEEeccCCCCCCHHHHHHHH
Q psy13875 34 KKEIATSYGVLIESAGIPLRGLFIIDTKGV----LRQITVNDLPVGRSVEEVLRLV 85 (105)
Q Consensus 34 ~~~vak~ygv~~~~~G~~~ratfiID~~G~----V~~~~~~~~~~~~~~~eil~~l 85 (105)
+..+++.|++. + .|+.+++++.+. +...+.| .++.+++.++|
T Consensus 63 ~~~~~~~~~i~----~--~Pt~~~~~~~~~~~~~~~~~~~G----~~~~~~l~~fi 108 (109)
T cd03002 63 NKPLCGKYGVQ----G--FPTLKVFRPPKKASKHAVEDYNG----ERSAKAIVDFV 108 (109)
T ss_pred cHHHHHHcCCC----c--CCEEEEEeCCCcccccccccccC----ccCHHHHHHHh
Confidence 56899999987 3 699999988873 3343433 34777777765
No 95
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=86.62 E-value=2.5 Score=30.91 Aligned_cols=47 Identities=23% Similarity=0.316 Sum_probs=34.3
Q ss_pred eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875 31 ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF 88 (105)
Q Consensus 31 sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l 88 (105)
.|.+..++++|++. | .|+.++++ +|++.....+ .++.+++.+++.+.
T Consensus 92 ~~~~~~l~~~~~I~----~--~PTl~~f~-~G~~v~~~~G----~~s~e~L~~fi~~~ 138 (224)
T PTZ00443 92 ATRALNLAKRFAIK----G--YPTLLLFD-KGKMYQYEGG----DRSTEKLAAFALGD 138 (224)
T ss_pred CcccHHHHHHcCCC----c--CCEEEEEE-CCEEEEeeCC----CCCHHHHHHHHHHH
Confidence 45667899999987 3 69999997 7877654433 35778888777654
No 96
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=86.53 E-value=1.7 Score=28.47 Aligned_cols=41 Identities=15% Similarity=0.194 Sum_probs=31.0
Q ss_pred CCc-eEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccC
Q psy13875 25 LKY-PLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDL 72 (105)
Q Consensus 25 l~f-pllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~ 72 (105)
+.| -+-.|.+.+++..||+. + +|+.++. ++|+++....|..
T Consensus 62 v~f~kVdid~~~~la~~f~V~----s--IPTli~f-kdGk~v~~~~G~~ 103 (111)
T cd02965 62 FRAAVVGRADEQALAARFGVL----R--TPALLFF-RDGRYVGVLAGIR 103 (111)
T ss_pred EEEEEEECCCCHHHHHHcCCC----c--CCEEEEE-ECCEEEEEEeCcc
Confidence 444 34466778999999998 3 6877777 7999999988744
No 97
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=86.48 E-value=1.6 Score=26.65 Aligned_cols=40 Identities=13% Similarity=0.276 Sum_probs=26.7
Q ss_pred cchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875 34 KKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL 84 (105)
Q Consensus 34 ~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~ 84 (105)
+..+++.||+. + .|+. ++.++|++...+.|.. +.+++.++
T Consensus 64 ~~~~~~~~~i~----~--~Pt~-~~~~~g~~~~~~~g~~----~~~~l~~~ 103 (104)
T cd02997 64 HDALKEEYNVK----G--FPTF-KYFENGKFVEKYEGER----TAEDIIEF 103 (104)
T ss_pred cHHHHHhCCCc----c--ccEE-EEEeCCCeeEEeCCCC----CHHHHHhh
Confidence 67888999986 3 5765 5557899877766533 45555543
No 98
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=86.11 E-value=1 Score=27.41 Aligned_cols=44 Identities=23% Similarity=0.318 Sum_probs=30.4
Q ss_pred eeC-cchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875 31 ADF-KKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL 84 (105)
Q Consensus 31 sD~-~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~ 84 (105)
.+. +..+++.|++. ..|+.+++++.|+....+.+. .+.+++.++
T Consensus 60 ~~~~~~~~~~~~~i~------~~P~~~~~~~~~~~~~~~~g~----~~~~~l~~~ 104 (105)
T cd02998 60 ADEANKDLAKKYGVS------GFPTLKFFPKGSTEPVKYEGG----RDLEDLVKF 104 (105)
T ss_pred CCCcchhhHHhCCCC------CcCEEEEEeCCCCCccccCCc----cCHHHHHhh
Confidence 344 57899999987 369999998887665555442 356666543
No 99
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=85.33 E-value=2.6 Score=25.44 Aligned_cols=40 Identities=10% Similarity=0.229 Sum_probs=28.3
Q ss_pred CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEec
Q psy13875 24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVN 70 (105)
Q Consensus 24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~ 70 (105)
++.|--+ .+...++++.|++. + .|+.+++ .+|+++....|
T Consensus 46 ~i~~~~vd~~~~~~~~~~~~i~----~--~Pt~~~~-~~g~~~~~~~g 86 (97)
T cd02984 46 SVLFLSIEAEELPEISEKFEIT----A--VPTFVFF-RNGTIVDRVSG 86 (97)
T ss_pred ceEEEEEccccCHHHHHhcCCc----c--ccEEEEE-ECCEEEEEEeC
Confidence 3444433 34467899999987 3 6888888 58999887775
No 100
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=84.01 E-value=3 Score=25.32 Aligned_cols=51 Identities=22% Similarity=0.332 Sum_probs=32.6
Q ss_pred CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHH
Q psy13875 25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLV 85 (105)
Q Consensus 25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l 85 (105)
+.|-.+ .|.+.++++.||+. + .|+.++++.+......+.+ +.+.+++.+++
T Consensus 51 ~~~~~id~~~~~~~~~~~~i~----~--~P~~~~~~~~~~~~~~~~g----~~~~~~l~~~~ 102 (103)
T cd03001 51 VKVGAVDADVHQSLAQQYGVR----G--FPTIKVFGAGKNSPQDYQG----GRTAKAIVSAA 102 (103)
T ss_pred ceEEEEECcchHHHHHHCCCC----c--cCEEEEECCCCcceeecCC----CCCHHHHHHHh
Confidence 444433 45678899999987 3 6999999755343333333 35677776654
No 101
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=83.78 E-value=1.8 Score=25.42 Aligned_cols=39 Identities=26% Similarity=0.267 Sum_probs=27.7
Q ss_pred cceeEEEECCCCCEEEEEeccCCCCC-CHHHHHHHHHhhh
Q psy13875 51 PLRGLFIIDTKGVLRQITVNDLPVGR-SVEEVLRLVKAFQ 89 (105)
Q Consensus 51 ~~ratfiID~~G~V~~~~~~~~~~~~-~~~eil~~l~~l~ 89 (105)
.....|.||++|+|..+.+-...... =.++++++++.++
T Consensus 17 ~v~v~~~I~~~G~v~~~~v~~s~~~~~l~~~a~~~v~~~~ 56 (79)
T PF03544_consen 17 TVVVEFTIDPDGRVSDVRVIQSSGPPILDEAALRAVKKWR 56 (79)
T ss_dssp EEEEEEEEETTTEEEEEEEEEESSSSCSHHHHHHHHCC-E
T ss_pred EEEEEEEEeCCCCEEEEEEEEccCHHHHHHHHHHHHHhCC
Confidence 36889999999999998875433222 4667788887743
No 102
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=83.76 E-value=3.8 Score=23.54 Aligned_cols=51 Identities=22% Similarity=0.322 Sum_probs=33.6
Q ss_pred CCCceEEe-eCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHH
Q psy13875 24 DLKYPLLA-DFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLV 85 (105)
Q Consensus 24 ~l~fplls-D~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l 85 (105)
++.|-.+. |.+..+++.||+. + .|+.++. .+|.+...+.+.. ..+++...|
T Consensus 41 ~~~~~~i~~~~~~~~~~~~~v~----~--~P~~~~~-~~g~~~~~~~g~~----~~~~l~~~i 92 (93)
T cd02947 41 KVKFVKVDVDENPELAEEYGVR----S--IPTFLFF-KNGKEVDRVVGAD----PKEELEEFL 92 (93)
T ss_pred CceEEEEECCCChhHHHhcCcc----c--ccEEEEE-ECCEEEEEEecCC----CHHHHHHHh
Confidence 55665543 3458899999987 3 6888888 5777777776533 345555444
No 103
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=83.42 E-value=4.3 Score=23.40 Aligned_cols=39 Identities=15% Similarity=0.206 Sum_probs=26.1
Q ss_pred cceeEEEECCCCCEEEEEeccCCCCCC-HHHHHHHHHhhh
Q psy13875 51 PLRGLFIIDTKGVLRQITVNDLPVGRS-VEEVLRLVKAFQ 89 (105)
Q Consensus 51 ~~ratfiID~~G~V~~~~~~~~~~~~~-~~eil~~l~~l~ 89 (105)
.....|.||++|+|....+-..+..+. -++++++++.+.
T Consensus 11 ~v~v~~~i~~~G~v~~~~i~~ssg~~~ld~~a~~av~~~~ 50 (74)
T TIGR01352 11 TVVVRFTVDADGRVTSVSVLKSSGDEALDRAALEAVRKAR 50 (74)
T ss_pred EEEEEEEECCCCCEEEEEEEEcCCChhHHHHHHHHHHhCC
Confidence 367889999999999988743322222 345666776654
No 104
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=82.98 E-value=2.6 Score=26.36 Aligned_cols=40 Identities=15% Similarity=0.365 Sum_probs=28.0
Q ss_pred CcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875 33 FKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL 84 (105)
Q Consensus 33 ~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~ 84 (105)
.+..++++|++. ..|+++++++ | .+..+.|. ++.+++.++
T Consensus 60 ~~~~l~~~~~V~------~~PT~~lf~~-g-~~~~~~G~----~~~~~l~~f 99 (100)
T cd02999 60 IKPSLLSRYGVV------GFPTILLFNS-T-PRVRYNGT----RTLDSLAAF 99 (100)
T ss_pred CCHHHHHhcCCe------ecCEEEEEcC-C-ceeEecCC----CCHHHHHhh
Confidence 357899999987 3699999974 5 55666653 466666554
No 105
>KOG1651|consensus
Probab=82.51 E-value=2.2 Score=30.22 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=15.0
Q ss_pred eEEEECCCCCEEEEEec
Q psy13875 54 GLFIIDTKGVLRQITVN 70 (105)
Q Consensus 54 atfiID~~G~V~~~~~~ 70 (105)
+-||||++|.|+.+|..
T Consensus 138 ~KFLVd~~G~vv~Ry~p 154 (171)
T KOG1651|consen 138 TKFLVDKDGHVVKRFSP 154 (171)
T ss_pred EEEeECCCCcEEEeeCC
Confidence 57999999999999963
No 106
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=82.29 E-value=9.9 Score=28.46 Aligned_cols=43 Identities=16% Similarity=0.256 Sum_probs=29.3
Q ss_pred chHHhhhCCccccCCccceeEEEECCC-CCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875 35 KEIATSYGVLIESAGIPLRGLFIIDTK-GVLRQITVNDLPVGRSVEEVLRLVKA 87 (105)
Q Consensus 35 ~~vak~ygv~~~~~G~~~ratfiID~~-G~V~~~~~~~~~~~~~~~eil~~l~~ 87 (105)
...++.+|+. ..|++|||+++ +++.-+-.|.+ +.+++.+.|..
T Consensus 203 ~gqa~~l~v~------~~Pal~Lv~~~t~~~~pv~~G~i----S~deL~~Ri~~ 246 (256)
T TIGR02739 203 SGQAQHLGVK------YFPALYLVNPKSQKMSPLAYGFI----SQDELKERILN 246 (256)
T ss_pred hHHHHhcCCc------cCceEEEEECCCCcEEEEeeccC----CHHHHHHHHHH
Confidence 3467777775 47999999999 55554555544 57777665544
No 107
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=81.96 E-value=2.6 Score=27.08 Aligned_cols=53 Identities=23% Similarity=0.219 Sum_probs=32.9
Q ss_pred CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCC---CCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875 24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTK---GVLRQITVNDLPVGRSVEEVLRLVKAF 88 (105)
Q Consensus 24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~---G~V~~~~~~~~~~~~~~~eil~~l~~l 88 (105)
.+.|-.+ .|.+.+++++||+. ..|+.++.+.. |.+ .+.|.. .-.++.+.|+++
T Consensus 53 ~i~~~~vd~d~~~~l~~~~~v~------~vPt~~i~~~g~~~~~~--~~~G~~----~~~el~~~i~~i 109 (113)
T cd02975 53 KLKLEIYDFDEDKEKAEKYGVE------RVPTTIFLQDGGKDGGI--RYYGLP----AGYEFASLIEDI 109 (113)
T ss_pred ceEEEEEeCCcCHHHHHHcCCC------cCCEEEEEeCCeecceE--EEEecC----chHHHHHHHHHH
Confidence 4556555 56778999999987 46988888653 334 344422 334555555544
No 108
>COG0810 TonB Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]
Probab=81.77 E-value=4.4 Score=29.65 Aligned_cols=50 Identities=20% Similarity=0.382 Sum_probs=34.2
Q ss_pred hHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCH-HHHHHHHHhhhh
Q psy13875 36 EIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV-EEVLRLVKAFQF 90 (105)
Q Consensus 36 ~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~-~eil~~l~~l~~ 90 (105)
..|++-|+. | ...-.|.||++|.|..+.+...+..+.. .+.|++++.+..
T Consensus 171 ~~A~~~g~~----G-~V~V~f~i~~~G~v~~v~v~~SSg~~~lD~aal~air~~~~ 221 (244)
T COG0810 171 AQARARGIE----G-TVKVKFTIDPDGNVTNVRVLKSSGSPALDRAALEAIRKWRF 221 (244)
T ss_pred HHHHhcCCC----c-eEEEEEEECCCCCEeeeEEeecCCcHHHHHHHHHHHHHhcc
Confidence 355555553 5 5789999999999999998654433333 456777777653
No 109
>smart00594 UAS UAS domain.
Probab=81.25 E-value=5.1 Score=25.97 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=29.1
Q ss_pred chHHhhhCCccccCCccceeEEEECCCC-CEEEEEeccCCCCCCHHHHHHHH
Q psy13875 35 KEIATSYGVLIESAGIPLRGLFIIDTKG-VLRQITVNDLPVGRSVEEVLRLV 85 (105)
Q Consensus 35 ~~vak~ygv~~~~~G~~~ratfiID~~G-~V~~~~~~~~~~~~~~~eil~~l 85 (105)
.++++.|++. | .|+..|+|++| ......++......+.++++..|
T Consensus 76 ~~l~~~~~~~----~--~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 76 QRVSQFYKLD----S--FPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred HHHHHhcCcC----C--CCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 5788888876 3 69999999997 22222332232234678887765
No 110
>PTZ00051 thioredoxin; Provisional
Probab=80.88 E-value=2.3 Score=25.79 Aligned_cols=41 Identities=10% Similarity=0.157 Sum_probs=28.9
Q ss_pred CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEecc
Q psy13875 24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVND 71 (105)
Q Consensus 24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~ 71 (105)
++.|-.+ .|....+++.|++. + .|+. ++-++|+++..+.|.
T Consensus 49 ~~~~~~vd~~~~~~~~~~~~v~----~--~Pt~-~~~~~g~~~~~~~G~ 90 (98)
T PTZ00051 49 KMVFVKVDVDELSEVAEKENIT----S--MPTF-KVFKNGSVVDTLLGA 90 (98)
T ss_pred CcEEEEEECcchHHHHHHCCCc----e--eeEE-EEEeCCeEEEEEeCC
Confidence 4555433 34457899999987 3 5864 555899999998874
No 111
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=80.23 E-value=5.1 Score=24.81 Aligned_cols=44 Identities=11% Similarity=0.206 Sum_probs=29.8
Q ss_pred eCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875 32 DFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA 87 (105)
Q Consensus 32 D~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~ 87 (105)
|....+++.|++. ..|+.++++ +|. ...+.| ..+.+++.+.+++
T Consensus 59 ~~~~~~~~~~~I~------~~Pt~~l~~-~~~-~~~~~G----~~~~~~l~~~~~~ 102 (104)
T cd03000 59 TAYSSIASEFGVR------GYPTIKLLK-GDL-AYNYRG----PRTKDDIVEFANR 102 (104)
T ss_pred ccCHhHHhhcCCc------cccEEEEEc-CCC-ceeecC----CCCHHHHHHHHHh
Confidence 4567899999987 369999994 454 344544 2357777776654
No 112
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=79.71 E-value=3 Score=25.65 Aligned_cols=48 Identities=17% Similarity=0.291 Sum_probs=31.5
Q ss_pred CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHH
Q psy13875 25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR 83 (105)
Q Consensus 25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~ 83 (105)
+.|--+ .|.+..++++|++. ..|+.+++ ++|+....+.| .++.+++.+
T Consensus 51 ~~~~~vd~~~~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~G----~~~~~~l~~ 99 (101)
T cd03003 51 IRIGAVNCGDDRMLCRSQGVN------SYPSLYVF-PSGMNPEKYYG----DRSKESLVK 99 (101)
T ss_pred eEEEEEeCCccHHHHHHcCCC------ccCEEEEE-cCCCCcccCCC----CCCHHHHHh
Confidence 444333 56678999999986 36988888 78987655544 335555543
No 113
>PRK10819 transport protein TonB; Provisional
Probab=79.31 E-value=5 Score=29.78 Aligned_cols=41 Identities=15% Similarity=0.338 Sum_probs=27.9
Q ss_pred CccceeEEEECCCCCEEEEEeccCCCCCCH-HHHHHHHHhhhh
Q psy13875 49 GIPLRGLFIIDTKGVLRQITVNDLPVGRSV-EEVLRLVKAFQF 90 (105)
Q Consensus 49 G~~~ratfiID~~G~V~~~~~~~~~~~~~~-~eil~~l~~l~~ 90 (105)
| .....|.||.+|+|..+.+-..+....+ .+++++++++.+
T Consensus 181 G-~V~V~f~I~~~G~V~~v~V~~Ssg~~~fD~aal~Avr~wr~ 222 (246)
T PRK10819 181 G-QVKVKFDVDEDGRVDNVRILSAEPRNMFEREVKQAMRKWRY 222 (246)
T ss_pred e-EEEEEEEECCCCCEEEEEEeccCChHHHHHHHHHHHHhcCC
Confidence 5 4678899999999999988433212223 356777777654
No 114
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=78.76 E-value=1.8 Score=28.07 Aligned_cols=31 Identities=13% Similarity=0.215 Sum_probs=23.3
Q ss_pred hHHhhhCCccccCCccceeEEEECCCCCEEEEEec
Q psy13875 36 EIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVN 70 (105)
Q Consensus 36 ~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~ 70 (105)
...+.|++. |...|+.+++|++|+++...++
T Consensus 65 ~~~~~~~~~----g~~vPt~~f~~~~Gk~~~~~~~ 95 (117)
T cd02959 65 PKDEEFSPD----GGYIPRILFLDPSGDVHPEIIN 95 (117)
T ss_pred chhhhcccC----CCccceEEEECCCCCCchhhcc
Confidence 455677665 4347999999999999886654
No 115
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=78.25 E-value=6.8 Score=21.90 Aligned_cols=31 Identities=19% Similarity=0.137 Sum_probs=23.2
Q ss_pred EEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875 55 LFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA 87 (105)
Q Consensus 55 tfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~ 87 (105)
.|.|++||+|.-.-.|-. +.+..++.+.|++
T Consensus 2 ~~~I~~dG~V~~~v~G~~--G~~C~~~t~~lE~ 32 (48)
T PF11211_consen 2 EFTIYPDGRVEEEVEGFK--GSSCLEATAALEE 32 (48)
T ss_pred EEEECCCcEEEEEEEecc--ChhHHHHHHHHHH
Confidence 488999999998887643 5567777776654
No 116
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=77.99 E-value=8.7 Score=24.58 Aligned_cols=43 Identities=12% Similarity=0.089 Sum_probs=31.4
Q ss_pred CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCC
Q psy13875 24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLP 73 (105)
Q Consensus 24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~ 73 (105)
++.|--+ .|....++++|++. ..|+..+. ++|+++....+...
T Consensus 53 ~i~f~~Vd~~~~~~l~~~~~v~------~vPt~l~f-k~G~~v~~~~g~~~ 96 (113)
T cd02989 53 ETKFIKVNAEKAPFLVEKLNIK------VLPTVILF-KNGKTVDRIVGFEE 96 (113)
T ss_pred CCEEEEEEcccCHHHHHHCCCc------cCCEEEEE-ECCEEEEEEECccc
Confidence 4455433 66678899999987 46877777 79999988877543
No 117
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=77.08 E-value=9 Score=22.20 Aligned_cols=41 Identities=20% Similarity=0.354 Sum_probs=26.6
Q ss_pred eCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875 32 DFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA 87 (105)
Q Consensus 32 D~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~ 87 (105)
|.+.+.+++||+. + .|+.++ +|++ .+.|. .+.+++.+.|++
T Consensus 40 ~~~~~~~~~~~v~----~--vPt~~~---~g~~--~~~G~----~~~~~l~~~l~~ 80 (82)
T TIGR00411 40 MENPQKAMEYGIM----A--VPAIVI---NGDV--EFIGA----PTKEELVEAIKK 80 (82)
T ss_pred ccCHHHHHHcCCc----c--CCEEEE---CCEE--EEecC----CCHHHHHHHHHh
Confidence 4567888999987 3 588765 6654 34442 356777777765
No 118
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=76.36 E-value=11 Score=24.45 Aligned_cols=44 Identities=9% Similarity=0.052 Sum_probs=32.9
Q ss_pred chHHhhhCCccccCCccceeEEEE---CCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875 35 KEIATSYGVLIESAGIPLRGLFII---DTKGVLRQITVNDLPVGRSVEEVLRLVKAF 88 (105)
Q Consensus 35 ~~vak~ygv~~~~~G~~~ratfiI---D~~G~V~~~~~~~~~~~~~~~eil~~l~~l 88 (105)
.+++..+++. ..|...+| +.+..|+....|.. +.++++..|+..
T Consensus 66 ~~la~~l~~~------~~P~~~~l~~~~~~~~vv~~i~G~~----~~~~ll~~L~~~ 112 (116)
T cd02991 66 YRVSQALRER------TYPFLAMIMLKDNRMTIVGRLEGLI----QPEDLINRLTFI 112 (116)
T ss_pred HHHHHHhCCC------CCCEEEEEEecCCceEEEEEEeCCC----CHHHHHHHHHHH
Confidence 4677777776 47999999 66677777777644 688888887664
No 119
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=75.66 E-value=2.7 Score=27.43 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=22.0
Q ss_pred cchHHhhhCCccccCCccceeEEEECCCCCEEEEEe
Q psy13875 34 KKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69 (105)
Q Consensus 34 ~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~ 69 (105)
...||+.|||..+ .|..+|| ++|++++--.
T Consensus 66 Sn~IAe~~~V~He-----SPQ~ili-~~g~~v~~aS 95 (105)
T PF11009_consen 66 SNAIAEDFGVKHE-----SPQVILI-KNGKVVWHAS 95 (105)
T ss_dssp HHHHHHHHT---------SSEEEEE-ETTEEEEEEE
T ss_pred HHHHHHHhCCCcC-----CCcEEEE-ECCEEEEECc
Confidence 3689999999864 6999999 7999988654
No 120
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=74.89 E-value=15 Score=24.39 Aligned_cols=56 Identities=5% Similarity=0.078 Sum_probs=37.1
Q ss_pred CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEE-EeccCCCCCCHHHHHHHHHhhh
Q psy13875 25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQI-TVNDLPVGRSVEEVLRLVKAFQ 89 (105)
Q Consensus 25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~-~~~~~~~~~~~~eil~~l~~l~ 89 (105)
+.|-.+ ++....+.+.||+..+ ..|+..+++.++. +|. +.++. +.+.+.++++...
T Consensus 58 i~Fv~vd~~~~~~~~~~fgl~~~----~~P~v~i~~~~~~-KY~~~~~~~----t~e~i~~Fv~~~l 115 (130)
T cd02983 58 WGWLWTEAGAQLDLEEALNIGGF----GYPAMVAINFRKM-KFATLKGSF----SEDGINEFLRELS 115 (130)
T ss_pred EEEEEEeCcccHHHHHHcCCCcc----CCCEEEEEecccC-ccccccCcc----CHHHHHHHHHHHH
Confidence 566654 3334569999998632 3699999999877 776 33333 5677777776644
No 121
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=73.74 E-value=18 Score=25.35 Aligned_cols=60 Identities=15% Similarity=0.103 Sum_probs=34.2
Q ss_pred ceEEeeCc--chHHhhhCCcc----ccCCccceeEEEECCCCCEEEEEeccCCC----CCCHHHHHHHHHhh
Q psy13875 27 YPLLADFK--KEIATSYGVLI----ESAGIPLRGLFIIDTKGVLRQITVNDLPV----GRSVEEVLRLVKAF 88 (105)
Q Consensus 27 fpllsD~~--~~vak~ygv~~----~~~G~~~ratfiID~~G~V~~~~~~~~~~----~~~~~eil~~l~~l 88 (105)
+|+..|.+ ..+.+.|.-.. ...| .|.+++++++|+..+.-.+..+. .....++|+.|..+
T Consensus 74 I~VkvDree~Pdid~~y~~~~~~~~~~gG--wPl~vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i~~~ 143 (163)
T PF03190_consen 74 IPVKVDREERPDIDKIYMNAVQAMSGSGG--WPLTVFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERIAEL 143 (163)
T ss_dssp EEEEEETTT-HHHHHHHHHHHHHHHS-----SSEEEEE-TTS-EEEEESS--SS-BTTB--HHHHHHHHHHH
T ss_pred EEEEeccccCccHHHHHHHHHHHhcCCCC--CCceEEECCCCCeeeeeeecCCCCCCCCccHHHHHHHHHHH
Confidence 57778865 57777772110 0114 69999999999999886654322 13567777766554
No 122
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=71.82 E-value=32 Score=25.64 Aligned_cols=43 Identities=16% Similarity=0.291 Sum_probs=29.3
Q ss_pred hHHhhhCCccccCCccceeEEEECCCC-CEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875 36 EIATSYGVLIESAGIPLRGLFIIDTKG-VLRQITVNDLPVGRSVEEVLRLVKAF 88 (105)
Q Consensus 36 ~vak~ygv~~~~~G~~~ratfiID~~G-~V~~~~~~~~~~~~~~~eil~~l~~l 88 (105)
..++.+|+. ..|++|||+++. ++.-+-.|.+ +.+++.+.|...
T Consensus 197 gqa~~l~v~------~~PAl~Lv~~~t~~~~pv~~G~i----S~deL~~Ri~~v 240 (248)
T PRK13703 197 GQAQRLGVK------YFPALMLVDPKSGSVRPLSYGFI----TQDDLAKRFLNV 240 (248)
T ss_pred hHHHhcCCc------ccceEEEEECCCCcEEEEeeccC----CHHHHHHHHHHH
Confidence 355666664 479999999995 6666666655 577777666443
No 123
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=71.39 E-value=16 Score=24.91 Aligned_cols=59 Identities=8% Similarity=0.090 Sum_probs=37.7
Q ss_pred eeCcchHHhhhCCccccCCccceeEEEECCCCC-EEEEEeccCC----CCCCHHHHHHHHHhhhhhhhcC
Q psy13875 31 ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGV-LRQITVNDLP----VGRSVEEVLRLVKAFQFVDKHG 95 (105)
Q Consensus 31 sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~-V~~~~~~~~~----~~~~~~eil~~l~~l~~~~~~~ 95 (105)
.|.+.++++.|++. + .|+++++=++|. .+....|..+ ...+.+++++.++.+......|
T Consensus 63 VDe~~dla~~y~I~----~--~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~~g 126 (142)
T PLN00410 63 ITEVPDFNTMYELY----D--PCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKG 126 (142)
T ss_pred CCCCHHHHHHcCcc----C--CCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 45667999999987 2 467774447887 5555544211 1246788888888765554444
No 124
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=71.13 E-value=8.4 Score=24.14 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=29.9
Q ss_pred eeC-cchHHh-hhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875 31 ADF-KKEIAT-SYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL 84 (105)
Q Consensus 31 sD~-~~~vak-~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~ 84 (105)
+|. +..+++ .|++. ..|+.+++++++...+.+.++ .++.+.++.+
T Consensus 62 ~d~~~~~~~~~~~~v~------~~Pti~~f~~~~~~~~~y~g~---~~~~~~l~~f 108 (109)
T cd02993 62 ADGEQREFAKEELQLK------SFPTILFFPKNSRQPIKYPSE---QRDVDSLLMF 108 (109)
T ss_pred CCccchhhHHhhcCCC------cCCEEEEEcCCCCCceeccCC---CCCHHHHHhh
Confidence 454 356675 48876 369999998887766555442 2577777654
No 125
>PHA02278 thioredoxin-like protein
Probab=69.76 E-value=14 Score=23.43 Aligned_cols=31 Identities=10% Similarity=0.149 Sum_probs=24.5
Q ss_pred chHHhhhCCccccCCccceeEEEECCCCCEEEEEeccC
Q psy13875 35 KEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDL 72 (105)
Q Consensus 35 ~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~ 72 (105)
..++++|++. + .|+.++. ++|+.+....|..
T Consensus 62 ~~l~~~~~I~----~--iPT~i~f-k~G~~v~~~~G~~ 92 (103)
T PHA02278 62 EKAVKLFDIM----S--TPVLIGY-KDGQLVKKYEDQV 92 (103)
T ss_pred HHHHHHCCCc----c--ccEEEEE-ECCEEEEEEeCCC
Confidence 4799999987 3 6876666 7899999888743
No 126
>KOG4614|consensus
Probab=69.41 E-value=6.2 Score=29.69 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=24.3
Q ss_pred ceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875 52 LRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF 88 (105)
Q Consensus 52 ~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l 88 (105)
.--+|+||+.|+||+.=.|..+ ...++.++.+++-|
T Consensus 248 ~GyV~L~D~s~kIRW~g~G~aT-p~Eve~L~~~~k~L 283 (287)
T KOG4614|consen 248 TGYVLLLDKSGKIRWQGFGTAT-PEEVEQLLSCTKLL 283 (287)
T ss_pred eEEEEEEccCceEEEeecCCCC-HHHHHHHHHHHHHH
Confidence 4568999999999998877542 22455555555443
No 127
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=69.11 E-value=17 Score=25.82 Aligned_cols=45 Identities=22% Similarity=0.161 Sum_probs=29.8
Q ss_pred CcchHHhhhCCccccCCccceeEEEECCCCCEE-EEEeccCCCCCCHHHHHHHHHhh
Q psy13875 33 FKKEIATSYGVLIESAGIPLRGLFIIDTKGVLR-QITVNDLPVGRSVEEVLRLVKAF 88 (105)
Q Consensus 33 ~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~-~~~~~~~~~~~~~~eil~~l~~l 88 (105)
.+.++++.||+. ..|+..+++ +|... ..+.|.. ..+++.+.|+++
T Consensus 65 ~~~~l~~~~~V~------~~Pt~~~f~-~g~~~~~~~~G~~----~~~~l~~~i~~~ 110 (215)
T TIGR02187 65 EDKEEAEKYGVE------RVPTTIILE-EGKDGGIRYTGIP----AGYEFAALIEDI 110 (215)
T ss_pred ccHHHHHHcCCC------ccCEEEEEe-CCeeeEEEEeecC----CHHHHHHHHHHH
Confidence 578999999987 368877775 67665 3666633 334555555554
No 128
>PF13103 TonB_2: TonB C terminal; PDB: 1LR0_A.
Probab=68.19 E-value=10 Score=22.65 Aligned_cols=38 Identities=16% Similarity=0.291 Sum_probs=20.8
Q ss_pred CccceeEEEECCCCCEEEEEeccCCCCCCHH-HHHHHHH
Q psy13875 49 GIPLRGLFIIDTKGVLRQITVNDLPVGRSVE-EVLRLVK 86 (105)
Q Consensus 49 G~~~ratfiID~~G~V~~~~~~~~~~~~~~~-eil~~l~ 86 (105)
++.....|-||++|+|..+.+...+.....+ .++++|+
T Consensus 25 ~~~~~V~i~i~~dG~v~~~~i~~sSG~~~~D~av~~ai~ 63 (85)
T PF13103_consen 25 GLSVTVRITIDPDGRVISVRIVKSSGNPAFDAAVRRAIR 63 (85)
T ss_dssp T--EEEEEEE-TTSBEEEEEEEE--S-HHHHHHHHHHHH
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCCHHHHHHHHHHHH
Confidence 3457889999999999777664433223333 3444554
No 129
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=67.43 E-value=6.7 Score=26.42 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=19.3
Q ss_pred CccceeEEEECCCCCEEEEEecc
Q psy13875 49 GIPLRGLFIIDTKGVLRQITVND 71 (105)
Q Consensus 49 G~~~ratfiID~~G~V~~~~~~~ 71 (105)
|...|+++++|++|+++....|-
T Consensus 77 g~~vPtivFld~~g~vi~~i~Gy 99 (130)
T cd02960 77 GQYVPRIMFVDPSLTVRADITGR 99 (130)
T ss_pred CcccCeEEEECCCCCCccccccc
Confidence 34579999999999999888764
No 130
>PTZ00102 disulphide isomerase; Provisional
Probab=67.21 E-value=13 Score=29.20 Aligned_cols=53 Identities=17% Similarity=0.318 Sum_probs=37.1
Q ss_pred CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875 25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ 89 (105)
Q Consensus 25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~ 89 (105)
+.|--+ ++.+..++++||+. | .|+.++++..+.+ .+.| .++.+++.++++++.
T Consensus 85 i~~~~vd~~~~~~l~~~~~i~----~--~Pt~~~~~~g~~~--~y~g----~~~~~~l~~~l~~~~ 138 (477)
T PTZ00102 85 IVLASVDATEEMELAQEFGVR----G--YPTIKFFNKGNPV--NYSG----GRTADGIVSWIKKLT 138 (477)
T ss_pred EEEEEEECCCCHHHHHhcCCC----c--ccEEEEEECCceE--EecC----CCCHHHHHHHHHHhh
Confidence 444433 56778999999987 4 6999999765544 3433 357888888887653
No 131
>PTZ00102 disulphide isomerase; Provisional
Probab=66.72 E-value=12 Score=29.25 Aligned_cols=55 Identities=7% Similarity=0.062 Sum_probs=38.4
Q ss_pred CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875 25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ 89 (105)
Q Consensus 25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~ 89 (105)
+.+-.+ .|.+...++.|++. | .|+.++++.++++...+.| .++.+++.+.|++..
T Consensus 410 v~~~~id~~~~~~~~~~~~v~----~--~Pt~~~~~~~~~~~~~~~G----~~~~~~l~~~i~~~~ 465 (477)
T PTZ00102 410 IIVAKMNGTANETPLEEFSWS----A--FPTILFVKAGERTPIPYEG----ERTVEGFKEFVNKHA 465 (477)
T ss_pred EEEEEEECCCCccchhcCCCc----c--cCeEEEEECCCcceeEecC----cCCHHHHHHHHHHcC
Confidence 444433 34556677888876 4 6999999988887555555 357888888887754
No 132
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.23 E-value=10 Score=29.21 Aligned_cols=46 Identities=11% Similarity=0.202 Sum_probs=35.0
Q ss_pred eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875 31 ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA 87 (105)
Q Consensus 31 sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~ 87 (105)
+|.+..|+..||+. ++|++|++ ++|+=+.-+.|.. ..+.+.++|+.
T Consensus 83 ~D~~p~vAaqfgiq------sIPtV~af-~dGqpVdgF~G~q----Pesqlr~~ld~ 128 (304)
T COG3118 83 CDAEPMVAAQFGVQ------SIPTVYAF-KDGQPVDGFQGAQ----PESQLRQFLDK 128 (304)
T ss_pred CCcchhHHHHhCcC------cCCeEEEe-eCCcCccccCCCC----cHHHHHHHHHH
Confidence 78888999999987 58999999 8999888887643 23444445544
No 133
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=64.78 E-value=27 Score=20.59 Aligned_cols=32 Identities=16% Similarity=0.114 Sum_probs=19.7
Q ss_pred CCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEE
Q psy13875 25 LKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLR 65 (105)
Q Consensus 25 l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~ 65 (105)
..+.++.=.+...+..||+. ..|+.+| +|+++
T Consensus 29 ~~~~~~~v~~~~~a~~~~v~------~vPti~i---~G~~~ 60 (76)
T TIGR00412 29 IDAEFEKVTDMNEILEAGVT------ATPGVAV---DGELV 60 (76)
T ss_pred CCeEEEEeCCHHHHHHcCCC------cCCEEEE---CCEEE
Confidence 34444432234457788887 3687666 88777
No 134
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=64.64 E-value=16 Score=28.12 Aligned_cols=53 Identities=25% Similarity=0.315 Sum_probs=35.6
Q ss_pred CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCE-EEEEeccCCCCCCHHHHHHHHHhh
Q psy13875 25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVL-RQITVNDLPVGRSVEEVLRLVKAF 88 (105)
Q Consensus 25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V-~~~~~~~~~~~~~~~eil~~l~~l 88 (105)
+.|-.+ +|.+.++++.||+. + .|+.+++ ++|+. ...+.| .++.+++.++++.+
T Consensus 54 v~~~~vd~~~~~~l~~~~~i~----~--~Pt~~~~-~~g~~~~~~~~g----~~~~~~l~~~i~~~ 108 (462)
T TIGR01130 54 IKLAKVDATEEKDLAQKYGVS----G--YPTLKIF-RNGEDSVSDYNG----PRDADGIVKYMKKQ 108 (462)
T ss_pred eEEEEEECCCcHHHHHhCCCc----c--ccEEEEE-eCCccceeEecC----CCCHHHHHHHHHHh
Confidence 444433 66678999999997 3 6877777 67776 455554 34677777777654
No 135
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=64.38 E-value=17 Score=24.87 Aligned_cols=59 Identities=19% Similarity=0.132 Sum_probs=36.2
Q ss_pred CCceEE-eeCcchHHhhhCCccccCC-ccceeEEEECCCCCEEEEEeccC-------CCCCCHHHHHHHH
Q psy13875 25 LKYPLL-ADFKKEIATSYGVLIESAG-IPLRGLFIIDTKGVLRQITVNDL-------PVGRSVEEVLRLV 85 (105)
Q Consensus 25 l~fpll-sD~~~~vak~ygv~~~~~G-~~~ratfiID~~G~V~~~~~~~~-------~~~~~~~eil~~l 85 (105)
+.|--+ .|.+.+++++|++.... | -..|+.++. ++|+......|.. +..-+.+++.+.+
T Consensus 81 v~f~~VDvd~~~~la~~~~V~~~~-~v~~~PT~ilf-~~Gk~v~r~~G~~~~~~~~~~~~~~~~~~~~~~ 148 (152)
T cd02962 81 LKFGKIDIGRFPNVAEKFRVSTSP-LSKQLPTIILF-QGGKEVARRPYYNDSKGRAVPFTFSKENVIRHF 148 (152)
T ss_pred eEEEEEECCCCHHHHHHcCceecC-CcCCCCEEEEE-ECCEEEEEEeccccCccccccccccHHHHHHhc
Confidence 444333 56678999999986210 1 125877777 6999999888621 1223456666654
No 136
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=62.36 E-value=30 Score=20.33 Aligned_cols=49 Identities=24% Similarity=0.374 Sum_probs=28.1
Q ss_pred CCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHH
Q psy13875 24 DLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVK 86 (105)
Q Consensus 24 ~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~ 86 (105)
++++.+..-.+..-.+.||+. ..|+. +|| |+++ +.|.. ++.+++.++|+
T Consensus 28 ~i~~ei~~~~~~~~~~~ygv~------~vPal-vIn--g~~~--~~G~~---p~~~el~~~l~ 76 (76)
T PF13192_consen 28 GIEVEIIDIEDFEEIEKYGVM------SVPAL-VIN--GKVV--FVGRV---PSKEELKELLE 76 (76)
T ss_dssp TEEEEEEETTTHHHHHHTT-S------SSSEE-EET--TEEE--EESS-----HHHHHHHHHH
T ss_pred CCeEEEEEccCHHHHHHcCCC------CCCEE-EEC--CEEE--EEecC---CCHHHHHHHhC
Confidence 456665543444444899987 46888 664 7766 44422 35677766654
No 137
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=58.68 E-value=15 Score=22.65 Aligned_cols=44 Identities=16% Similarity=0.422 Sum_probs=29.0
Q ss_pred CCCceEEe-eCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHH
Q psy13875 24 DLKYPLLA-DFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVL 82 (105)
Q Consensus 24 ~l~fplls-D~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil 82 (105)
+++|-++- |...++++.||+. ..|+.++ +|++++. | ....++++
T Consensus 43 ~i~~~~vd~~~~~e~a~~~~V~------~vPt~vi---dG~~~~~--G----~~~~~e~~ 87 (89)
T cd03026 43 NIEHEMIDGALFQDEVEERGIM------SVPAIFL---NGELFGF--G----RMTLEEIL 87 (89)
T ss_pred CceEEEEEhHhCHHHHHHcCCc------cCCEEEE---CCEEEEe--C----CCCHHHHh
Confidence 56777763 3456799999997 3688864 6877653 4 22566655
No 138
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=58.17 E-value=14 Score=23.30 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=28.3
Q ss_pred CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEecc
Q psy13875 24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVND 71 (105)
Q Consensus 24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~ 71 (105)
++.|--+ .|.+ .+++.|++. ..|+.++. ++|+++....|.
T Consensus 55 ~v~f~~vd~~~~-~l~~~~~i~------~~Pt~~~f-~~G~~v~~~~G~ 95 (113)
T cd02957 55 ETKFVKINAEKA-FLVNYLDIK------VLPTLLVY-KNGELIDNIVGF 95 (113)
T ss_pred CcEEEEEEchhh-HHHHhcCCC------cCCEEEEE-ECCEEEEEEecH
Confidence 4455433 3334 899999987 36876666 799999998874
No 139
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=57.68 E-value=11 Score=25.64 Aligned_cols=39 Identities=26% Similarity=0.337 Sum_probs=27.5
Q ss_pred CCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEE
Q psy13875 24 DLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQ 66 (105)
Q Consensus 24 ~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~ 66 (105)
+++|-+.-|...+-..+|.-. |++.--+|+||+.|+|..
T Consensus 118 ~~~f~~~~gn~~~D~~~y~~~----gi~~~~i~~i~~~~~~~~ 156 (157)
T smart00775 118 GNPFYAGFGNRITDVISYSAV----GIPPSRIFTINPKGEVHQ 156 (157)
T ss_pred CCCEEEEeCCCchhHHHHHHc----CCChhhEEEECCCCcccc
Confidence 345554455556677777544 778889999999999863
No 140
>PF05228 CHASE4: CHASE4 domain; InterPro: IPR007892 CHASE4 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in prokaryotes. Specifically, CHASE4 domains are found in histidine kinases in archaea and in predicted diguanylate cyclases/phosphodiesterases in bacteria. Environmental factors that are recognised by CHASE4 domains are not known at this time [].
Probab=57.58 E-value=34 Score=22.47 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=15.0
Q ss_pred ceeEEEECCCCCEEEEEe
Q psy13875 52 LRGLFIIDTKGVLRQITV 69 (105)
Q Consensus 52 ~ratfiID~~G~V~~~~~ 69 (105)
.=.+|++|++|++++...
T Consensus 50 ~d~~~~~d~~g~~~~~~~ 67 (161)
T PF05228_consen 50 LDLIFILDPDGRVLYSSS 67 (161)
T ss_pred ccEEEEEcCCCCEEEEec
Confidence 467999999999998444
No 141
>PF11720 Inhibitor_I78: Peptidase inhibitor I78 family; InterPro: IPR021719 This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.
Probab=57.14 E-value=17 Score=20.97 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=16.6
Q ss_pred ccceeEEEECCCCCEEEEE
Q psy13875 50 IPLRGLFIIDTKGVLRQIT 68 (105)
Q Consensus 50 ~~~ratfiID~~G~V~~~~ 68 (105)
.+-|-+|.+|.+|+|..+.
T Consensus 40 r~dRLnv~~D~~g~I~~v~ 58 (60)
T PF11720_consen 40 RPDRLNVEVDDDGVITRVR 58 (60)
T ss_pred CCCcEEEEECCCCcEEEEe
Confidence 3689999999999998775
No 142
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=56.25 E-value=6.2 Score=21.08 Aligned_cols=14 Identities=50% Similarity=0.797 Sum_probs=11.8
Q ss_pred hhhhhhhcCCcccC
Q psy13875 87 AFQFVDKHGEGSKR 100 (105)
Q Consensus 87 ~l~~~~~~~~~~~~ 100 (105)
+||..+++|++||+
T Consensus 1 ALQ~~d~~~v~tPa 14 (40)
T PF10417_consen 1 ALQFTDKHGVATPA 14 (40)
T ss_dssp HHHHHHHHSSBBCT
T ss_pred CceehhhhCcccCc
Confidence 47888999999986
No 143
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain []. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A ....
Probab=56.23 E-value=12 Score=22.26 Aligned_cols=17 Identities=29% Similarity=0.665 Sum_probs=14.3
Q ss_pred eeEEEECCCCCEEEEEe
Q psy13875 53 RGLFIIDTKGVLRQITV 69 (105)
Q Consensus 53 ratfiID~~G~V~~~~~ 69 (105)
-..|++|.+|+|.++--
T Consensus 12 ~~i~~~d~~g~I~~~N~ 28 (113)
T PF00989_consen 12 DGIFVIDEDGRILYVNQ 28 (113)
T ss_dssp SEEEEEETTSBEEEECH
T ss_pred ceEEEEeCcCeEEEECH
Confidence 56899999999998754
No 144
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=55.86 E-value=17 Score=20.34 Aligned_cols=34 Identities=21% Similarity=0.442 Sum_probs=22.0
Q ss_pred CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEE
Q psy13875 24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQ 66 (105)
Q Consensus 24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~ 66 (105)
++.|-.+ .|.+.++++.||+. ..|+.+| +|++++
T Consensus 30 ~i~~~~id~~~~~~l~~~~~i~------~vPti~i---~~~~~~ 64 (67)
T cd02973 30 NISAEMIDAAEFPDLADEYGVM------SVPAIVI---NGKVEF 64 (67)
T ss_pred ceEEEEEEcccCHhHHHHcCCc------ccCEEEE---CCEEEE
Confidence 4666666 34456789999986 3687654 455554
No 145
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=53.09 E-value=88 Score=22.90 Aligned_cols=65 Identities=18% Similarity=0.388 Sum_probs=45.4
Q ss_pred HHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccC-CccceeEEEECCCCCEEEEEeccCCCCCCHHHHH
Q psy13875 6 EGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESA-GIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVL 82 (105)
Q Consensus 6 ~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~-G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil 82 (105)
+...+|.+.. +-.||.+|.....+...|++..++. .++.=++|+-|. |+|.+.+.. ..|..+.+.
T Consensus 118 ~~i~afk~rm--------GW~~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg-~~VfhTyst---~~RG~e~l~ 183 (211)
T PF05988_consen 118 EKIEAFKRRM--------GWTFPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDG-GRVFHTYST---YGRGGERLM 183 (211)
T ss_pred HHHHHHHHhc--------CCCceEEEcCCCcccccccceeccCCCceeEEEEEEcC-CEEEEEeec---CCCCchhhh
Confidence 4567888762 6789999999999999999855322 233447888877 999888863 234444444
No 146
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=52.89 E-value=22 Score=23.56 Aligned_cols=43 Identities=16% Similarity=0.219 Sum_probs=27.2
Q ss_pred CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEe
Q psy13875 24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69 (105)
Q Consensus 24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~ 69 (105)
++++-++ -|.+.++..+|--. .+..+|+.+++|.+|.+..+|.
T Consensus 72 ~i~~~~i~rd~~~el~~~~lt~---g~~~IP~~I~~d~~~~~lg~wg 115 (129)
T PF14595_consen 72 NIEVRIILRDENKELMDQYLTN---GGRSIPTFIFLDKDGKELGRWG 115 (129)
T ss_dssp TEEEEEE-HHHHHHHTTTTTT----SS--SSEEEEE-TT--EEEEEE
T ss_pred CCeEEEEEecCChhHHHHHHhC---CCeecCEEEEEcCCCCEeEEEc
Confidence 4566655 45567777777442 2457999999999999999886
No 147
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=52.55 E-value=34 Score=22.58 Aligned_cols=35 Identities=6% Similarity=0.107 Sum_probs=21.8
Q ss_pred ceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHH
Q psy13875 52 LRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVK 86 (105)
Q Consensus 52 ~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~ 86 (105)
+.+.||+|.+|+++....+..........+++.+.
T Consensus 2 I~~i~i~n~~G~~i~~k~y~~~~~~~~~~~~~~~~ 36 (141)
T PF01217_consen 2 IKAILILNSQGKRILSKYYRDVSEEERQKLFEKFI 36 (141)
T ss_dssp EEEEEEEETTSEEEEEEESSTSTSHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCEEEehhcCCccHHHHHHHHHHHH
Confidence 46789999999988877663222223344444443
No 148
>KOG0907|consensus
Probab=52.12 E-value=50 Score=21.14 Aligned_cols=42 Identities=14% Similarity=0.193 Sum_probs=30.6
Q ss_pred cchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875 34 KKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA 87 (105)
Q Consensus 34 ~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~ 87 (105)
..++++.|++. .+|+-.++ ++|..+...+|. +.+++.+.+.+
T Consensus 63 ~~~~~~~~~V~------~~PTf~f~-k~g~~~~~~vGa-----~~~~l~~~i~~ 104 (106)
T KOG0907|consen 63 LEEVAKEFNVK------AMPTFVFY-KGGEEVDEVVGA-----NKAELEKKIAK 104 (106)
T ss_pred CHhHHHhcCce------EeeEEEEE-ECCEEEEEEecC-----CHHHHHHHHHh
Confidence 38899999987 45777766 899999888864 45566555543
No 149
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=52.04 E-value=30 Score=22.33 Aligned_cols=48 Identities=0% Similarity=-0.126 Sum_probs=30.3
Q ss_pred CCceEE-eeCcchHH-hhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHH
Q psy13875 25 LKYPLL-ADFKKEIA-TSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR 83 (105)
Q Consensus 25 l~fpll-sD~~~~va-k~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~ 83 (105)
+.|--+ .|.+..++ +.|++. + .|+..+. ++|+....+.|. +..++++.
T Consensus 62 v~~~~Vd~d~~~~l~~~~~~I~----~--~PTl~lf-~~g~~~~~y~G~----~~~~~i~~ 111 (113)
T cd03006 62 VLFVAINCWWPQGKCRKQKHFF----Y--FPVIHLY-YRSRGPIEYKGP----MRAPYMEK 111 (113)
T ss_pred eEEEEEECCCChHHHHHhcCCc----c--cCEEEEE-ECCccceEEeCC----CCHHHHHh
Confidence 443333 45566788 589987 3 6887777 788876666553 35555544
No 150
>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3K3D_A 3K3C_B 3KX0_X 3FC7_B 3LUQ_D 3MXQ_A 3BWL_C 3FG8_A.
Probab=51.33 E-value=16 Score=21.55 Aligned_cols=16 Identities=31% Similarity=0.640 Sum_probs=12.6
Q ss_pred eEEEECCCCCEEEEEe
Q psy13875 54 GLFIIDTKGVLRQITV 69 (105)
Q Consensus 54 atfiID~~G~V~~~~~ 69 (105)
..+++|++|+|++.-.
T Consensus 7 ~i~v~D~~~~i~~~N~ 22 (110)
T PF08448_consen 7 GIFVIDPDGRIVYANQ 22 (110)
T ss_dssp EEEEEETTSBEEEE-H
T ss_pred eeEEECCCCEEEEEHH
Confidence 4688999999998754
No 151
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=50.39 E-value=30 Score=21.98 Aligned_cols=32 Identities=13% Similarity=0.226 Sum_probs=21.8
Q ss_pred CCceEEe---eCcchHHhhhCCccccCCccceeEEEECCCC
Q psy13875 25 LKYPLLA---DFKKEIATSYGVLIESAGIPLRGLFIIDTKG 62 (105)
Q Consensus 25 l~fplls---D~~~~vak~ygv~~~~~G~~~ratfiID~~G 62 (105)
+.|..+- |.+..+++.||+. + .|+.+++.+..
T Consensus 55 v~~~~vd~~~~~~~~~~~~~~i~----~--~Pt~~lf~~~~ 89 (114)
T cd02992 55 VRVAAVDCADEENVALCRDFGVT----G--YPTLRYFPPFS 89 (114)
T ss_pred eEEEEEeccchhhHHHHHhCCCC----C--CCEEEEECCCC
Confidence 4554442 3456899999986 3 69999995554
No 152
>PHA02125 thioredoxin-like protein
Probab=49.41 E-value=51 Score=19.13 Aligned_cols=42 Identities=17% Similarity=0.105 Sum_probs=26.3
Q ss_pred eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHH
Q psy13875 31 ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLV 85 (105)
Q Consensus 31 sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l 85 (105)
.|.+.+++++|++. + .|+. + +|..+....|. .++..++.+.|
T Consensus 32 ~~~~~~l~~~~~v~----~--~PT~-~---~g~~~~~~~G~---~~~~~~l~~~~ 73 (75)
T PHA02125 32 TDEGVELTAKHHIR----S--LPTL-V---NTSTLDRFTGV---PRNVAELKEKL 73 (75)
T ss_pred CCCCHHHHHHcCCc----e--eCeE-E---CCEEEEEEeCC---CCcHHHHHHHh
Confidence 44567899999987 3 5764 3 57666666653 33555555443
No 153
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=49.36 E-value=51 Score=25.68 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=16.2
Q ss_pred CccceeEEEECCCCCEEEE
Q psy13875 49 GIPLRGLFIIDTKGVLRQI 67 (105)
Q Consensus 49 G~~~ratfiID~~G~V~~~ 67 (105)
|+.....|.|+++|+|..+
T Consensus 284 g~~v~V~I~L~pdG~V~~I 302 (346)
T TIGR02794 284 GKTCRLRIRLAPDGTLLSV 302 (346)
T ss_pred CCEEEEEEEECCCCCEEee
Confidence 5667889999999999983
No 154
>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A ....
Probab=48.69 E-value=19 Score=20.91 Aligned_cols=16 Identities=31% Similarity=0.704 Sum_probs=12.8
Q ss_pred eEEEECCCCCEEEEEe
Q psy13875 54 GLFIIDTKGVLRQITV 69 (105)
Q Consensus 54 atfiID~~G~V~~~~~ 69 (105)
+.+++|++|+|.++--
T Consensus 3 ~i~i~d~~g~i~~~N~ 18 (104)
T PF13426_consen 3 GIFILDPDGRILYVNP 18 (104)
T ss_dssp EEEEEETTSBEEEE-H
T ss_pred EEEEECCcCcEEehhH
Confidence 4789999999998754
No 155
>PHA02762 hypothetical protein; Provisional
Probab=48.57 E-value=31 Score=20.00 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=16.2
Q ss_pred eeEEEECCCCCEEEEEeccC
Q psy13875 53 RGLFIIDTKGVLRQITVNDL 72 (105)
Q Consensus 53 ratfiID~~G~V~~~~~~~~ 72 (105)
=.|+=||++|+|.|+.+.+.
T Consensus 29 fvtigide~g~iayisiep~ 48 (62)
T PHA02762 29 FVTIGIDENDKISYISIEPL 48 (62)
T ss_pred EEEEeECCCCcEEEEEeccc
Confidence 45777999999999998543
No 156
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=48.46 E-value=37 Score=25.00 Aligned_cols=42 Identities=12% Similarity=0.321 Sum_probs=27.1
Q ss_pred cchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHH
Q psy13875 34 KKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVK 86 (105)
Q Consensus 34 ~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~ 86 (105)
+.++++.+|+. | .|+.|+.|.+|.+..+. |-. ..+++.+.|.
T Consensus 208 n~~l~~~lGv~----G--TPaiv~~d~~G~~~~v~-G~~----~~~~L~~~l~ 249 (251)
T PRK11657 208 NQKLMDDLGAN----A--TPAIYYMDKDGTLQQVV-GLP----DPAQLAEIMG 249 (251)
T ss_pred HHHHHHHcCCC----C--CCEEEEECCCCCEEEec-CCC----CHHHHHHHhC
Confidence 34566777776 4 69999999999765433 322 4566665553
No 157
>COG3322 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=46.07 E-value=21 Score=27.37 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=24.0
Q ss_pred ceeEEEECCCCCEEEEEeccCCCCCC---HHHHHHHHH
Q psy13875 52 LRGLFIIDTKGVLRQITVNDLPVGRS---VEEVLRLVK 86 (105)
Q Consensus 52 ~ratfiID~~G~V~~~~~~~~~~~~~---~~eil~~l~ 86 (105)
.-..|+||++|+++|..........+ .+++++.+.
T Consensus 104 ~d~vf~vd~~G~~vy~~~~d~~t~~~~~~~~~L~~~i~ 141 (295)
T COG3322 104 LDGVFVVDPSGKLVYSKLVDQETATELPLPESLLEDIR 141 (295)
T ss_pred ccEEEEECCCCCEEEEeeeccccccccCCcHHHHHHHh
Confidence 46789999999999998865433332 345555554
No 158
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=45.45 E-value=33 Score=23.84 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=29.2
Q ss_pred CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccC
Q psy13875 24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDL 72 (105)
Q Consensus 24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~ 72 (105)
.+.|--+ +|.. .++..|++. .+|+.+|+ ++|+++...++..
T Consensus 114 ~vkF~kVd~d~~-~l~~~f~v~------~vPTllly-k~G~~v~~~vG~~ 155 (175)
T cd02987 114 AVKFCKIRASAT-GASDEFDTD------ALPALLVY-KGGELIGNFVRVT 155 (175)
T ss_pred CeEEEEEeccch-hhHHhCCCC------CCCEEEEE-ECCEEEEEEechH
Confidence 3455433 4444 788889887 46888777 7999999888754
No 159
>KOG2501|consensus
Probab=45.02 E-value=16 Score=25.57 Aligned_cols=29 Identities=17% Similarity=0.363 Sum_probs=21.5
Q ss_pred chHHhhhCCccccCCccceeEEEECCCCCEEEEEe
Q psy13875 35 KEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69 (105)
Q Consensus 35 ~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~ 69 (105)
.++++.|++. .+|+..+|+++|+++....
T Consensus 105 ~~l~~ky~v~------~iP~l~i~~~dG~~v~~d~ 133 (157)
T KOG2501|consen 105 QKLSEKYEVK------GIPALVILKPDGTVVTEDA 133 (157)
T ss_pred HHHHHhcccC------cCceeEEecCCCCEehHhh
Confidence 4555566654 4799999999998886553
No 160
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=44.85 E-value=46 Score=21.58 Aligned_cols=44 Identities=11% Similarity=0.215 Sum_probs=26.7
Q ss_pred hHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHH
Q psy13875 36 EIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLV 85 (105)
Q Consensus 36 ~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l 85 (105)
++.+.|++...- +..|+.+++ ++|+.+....|.. ...+++.+.+
T Consensus 77 ~~~~~~~i~~~i--~~~PT~v~~-k~Gk~v~~~~G~~---~~~~~l~~~~ 120 (122)
T TIGR01295 77 AFRSRFGIPTSF--MGTPTFVHI-TDGKQVSVRCGSS---TTAQELQDIA 120 (122)
T ss_pred HHHHHcCCcccC--CCCCEEEEE-eCCeEEEEEeCCC---CCHHHHHHHh
Confidence 444666654211 236888888 8999998888742 2355554443
No 161
>KOG0190|consensus
Probab=44.41 E-value=34 Score=28.11 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=35.0
Q ss_pred CcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875 33 FKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ 89 (105)
Q Consensus 33 ~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~ 89 (105)
.++.+|.+|++. | .|++-|. ++|+....+.| .|..+.|+.++++..
T Consensus 87 ~~~~~~~~y~v~----g--yPTlkiF-rnG~~~~~Y~G----~r~adgIv~wl~kq~ 132 (493)
T KOG0190|consen 87 EESDLASKYEVR----G--YPTLKIF-RNGRSAQDYNG----PREADGIVKWLKKQS 132 (493)
T ss_pred hhhhhHhhhcCC----C--CCeEEEE-ecCCcceeccC----cccHHHHHHHHHhcc
Confidence 368999999998 6 4887777 99998444443 568999999987643
No 162
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=43.16 E-value=37 Score=22.36 Aligned_cols=51 Identities=6% Similarity=0.104 Sum_probs=35.3
Q ss_pred eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCC------CCCHHHHHHHHHhh
Q psy13875 31 ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPV------GRSVEEVLRLVKAF 88 (105)
Q Consensus 31 sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~------~~~~~eil~~l~~l 88 (105)
.|...++++.|++. +.|++.++ ++|+-..+..|.... -.+-++++..++.+
T Consensus 54 VDev~dva~~y~I~------amPtfvff-kngkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 54 VDKVPVYTQYFDIS------YIPSTIFF-FNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred ccccHHHHHhcCce------eCcEEEEE-ECCcEEEEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 45678999999987 46888888 788888887764211 12346676666543
No 163
>PRK08671 methionine aminopeptidase; Provisional
Probab=42.36 E-value=17 Score=27.22 Aligned_cols=14 Identities=14% Similarity=0.143 Sum_probs=10.7
Q ss_pred ceeEEEECCCCCEE
Q psy13875 52 LRGLFIIDTKGVLR 65 (105)
Q Consensus 52 ~ratfiID~~G~V~ 65 (105)
.-.|++|.++|.++
T Consensus 275 ~~~Tv~v~~~g~~~ 288 (291)
T PRK08671 275 AEHTVIVTEDGCEV 288 (291)
T ss_pred EEEEEEECCCCcEE
Confidence 46788888888765
No 164
>PF09048 Cro: Cro; InterPro: IPR000655 Bacteriophage lambda encodes two repressors: the Cro repressor that acts to turn off early gene transcription during the lytic cycle, and the lambda or cI repressor that is required to maintain lysogenic growth. Together the Cro and cI repressors form a helix-turn-helix (HTH) superfamily. The lambda Cro repressor binds to DNA as a highly flexible dimer. The crystal structure of the lambda Cro repressor [] reveals a HTH DNA-binding protein with an alpha/beta fold that differs from other Cro family members, possibly by an evolutionary fold change []. Most Cro proteins, such as Enterobacteria phage P22 Cro and Bacteriophage 434 Cro, have an all-alpha structure that is thought to be ancestral to lambda Cro, where the fourth and fifth helices are replaced by a beta-sheet, possibly as a result of secondary structure switching rather than by nonhomologous replacement []. This entry represents the lambda-type Cro repressor with an alpha/beta topology.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 5CRO_A 2ECS_A 2OVG_A 6CRO_A 1D1L_A 2ORC_A 1D1M_B 3ORC_A 1ORC_A 2A63_A ....
Probab=42.20 E-value=45 Score=19.54 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=24.2
Q ss_pred chHHhhhCCccccCC---ccceeEEEE-CCCCCEEEEEeccC
Q psy13875 35 KEIATSYGVLIESAG---IPLRGLFII-DTKGVLRQITVNDL 72 (105)
Q Consensus 35 ~~vak~ygv~~~~~G---~~~ratfiI-D~~G~V~~~~~~~~ 72 (105)
.+.|+++|+...... ...|..||. .+||.+....+-+.
T Consensus 16 ~kaA~~lGV~Q~AIsKAlr~gR~I~v~~~~dGs~~A~EirpF 57 (59)
T PF09048_consen 16 AKAARALGVTQSAISKALRAGRNIFVTIMPDGSVEAEEIRPF 57 (59)
T ss_dssp HHHHHHHTS-HHHHHHHHHCT-EEEEEEETTSEEEEEEEEES
T ss_pred HHHHHHcCCcHHHHHHHHHcCCcEEEEEcCCCeEEEEEecCC
Confidence 367888888754210 135888876 89999988876543
No 165
>PRK09974 putative regulator PrlF; Provisional
Probab=42.04 E-value=1e+02 Score=20.34 Aligned_cols=47 Identities=11% Similarity=0.006 Sum_probs=33.6
Q ss_pred hHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875 36 EIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA 87 (105)
Q Consensus 36 ~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~ 87 (105)
+|-+++|+.. | -+-.|.+.++|.|+-.-......++-+..+|.+|.+
T Consensus 25 ~IR~~Lgl~~---G--dkI~f~i~~dG~V~i~~~~~~~~Dp~ig~FL~fLa~ 71 (111)
T PRK09974 25 PVRKALKLKK---R--DSIHYEILPGGQVFICRLGDEEEDPVLGAFLDFLAA 71 (111)
T ss_pred HHHHHcCCCC---C--CEEEEEEeCCCEEEEEECCCCCCCchHHHHHHHHHH
Confidence 6777888763 3 588899989999887766444344557778877755
No 166
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=41.24 E-value=95 Score=19.85 Aligned_cols=56 Identities=14% Similarity=0.252 Sum_probs=35.5
Q ss_pred CCCceEEeeCc--chHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCC-CHHHHHHHHHh
Q psy13875 24 DLKYPLLADFK--KEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGR-SVEEVLRLVKA 87 (105)
Q Consensus 24 ~l~fpllsD~~--~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~-~~~eil~~l~~ 87 (105)
++.|-++ |.+ +.+.+.||+..+. + ..|+..|+|.++ -+|. +...- +.+.|.+.++.
T Consensus 51 ki~Fv~~-D~~~~~~~l~~fgl~~~~-~-~~P~~~i~~~~~-~KY~----~~~~~~t~e~i~~F~~~ 109 (111)
T cd03073 51 KLNFAVA-DKEDFSHELEEFGLDFSG-G-EKPVVAIRTAKG-KKYV----MEEEFSDVDALEEFLED 109 (111)
T ss_pred eEEEEEE-cHHHHHHHHHHcCCCccc-C-CCCEEEEEeCCC-CccC----CCcccCCHHHHHHHHHH
Confidence 5777774 443 4588899987431 1 269999999776 3443 22233 67778777765
No 167
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=41.01 E-value=11 Score=22.73 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=23.5
Q ss_pred eeEEEECCCCCEEEEEeccCCC-CCCHHHHHHHHHh
Q psy13875 53 RGLFIIDTKGVLRQITVNDLPV-GRSVEEVLRLVKA 87 (105)
Q Consensus 53 ratfiID~~G~V~~~~~~~~~~-~~~~~eil~~l~~ 87 (105)
-..|.||++|.|..=.+|.+.. +.+.+|+-+.|++
T Consensus 30 ~~~~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~ 65 (82)
T PF02563_consen 30 SGEYTVDPDGTISLPLIGPVKVAGLTLEEAEEEIKQ 65 (82)
T ss_dssp CCSEE--TTSEEEETTTEEEE-TT--HHHHHHHHHH
T ss_pred ccceEECCCCcEeecccceEEECCCCHHHHHHHHHH
Confidence 3489999999999888776544 5688888887765
No 168
>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]
Probab=40.50 E-value=78 Score=21.90 Aligned_cols=41 Identities=10% Similarity=0.128 Sum_probs=25.8
Q ss_pred eeEEEECCCCCEEEEEec-cCCCCCCHHHHHHHHHhhhhhhhc
Q psy13875 53 RGLFIIDTKGVLRQITVN-DLPVGRSVEEVLRLVKAFQFVDKH 94 (105)
Q Consensus 53 ratfiID~~G~V~~~~~~-~~~~~~~~~eil~~l~~l~~~~~~ 94 (105)
-..++++++|++|....+ +++ .+.-..+++.+-++-.++++
T Consensus 3 ~~vli~nrqgk~RL~K~yt~~~-~~e~~kli~~i~~lIs~R~~ 44 (152)
T COG5030 3 KFVLIFNRQGKPRLVKWYTPVS-DPEQAKLIADIYELISARKP 44 (152)
T ss_pred EEEEEEcCCCceeeeEeeccCC-cHHHHHHHHHHHHHHHcCCc
Confidence 467899999999988554 332 23344466666555444433
No 169
>PF07845 DUF1636: Protein of unknown function (DUF1636); InterPro: IPR012863 The sequences featured in this family are derived from a number of hypothetical prokaryotic proteins. The region in question is approximately 130 amino acids long.
Probab=39.48 E-value=1.1e+02 Score=20.10 Aligned_cols=52 Identities=13% Similarity=0.117 Sum_probs=38.8
Q ss_pred cceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhhhhhhcCCcccCCCCC
Q psy13875 51 PLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQFVDKHGEGSKRVPSG 104 (105)
Q Consensus 51 ~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~~~~~~~~~~~~~~~~ 104 (105)
..+-|+-+-..|+.-|.+- .+....+.++|++..+.... ...|-+..+-.|+
T Consensus 53 ~r~CtVA~~~~gK~tYlfG-dl~p~~~a~~il~~a~~Y~~-s~dG~vp~~~rP~ 104 (116)
T PF07845_consen 53 DRPCTVALQAPGKWTYLFG-DLDPDEDAEDILAFAALYAA-SPDGLVPWRERPE 104 (116)
T ss_pred CCceEEEEEcCCCcEEEEe-cCCcccCHHHHHHHHHHHHh-CCCCccccccCCH
Confidence 3688888889999999884 66665789999988877654 4467777665554
No 170
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=38.80 E-value=1.1e+02 Score=21.72 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=24.9
Q ss_pred chHHhhhCCccccCCccceeEEEECCCCCEEEEEeccC
Q psy13875 35 KEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDL 72 (105)
Q Consensus 35 ~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~ 72 (105)
.++|+.|++. +.|+-++.|.+|+-+...-|=+
T Consensus 105 ~ELa~kf~vr------stPtfvFfdk~Gk~Il~lPGY~ 136 (182)
T COG2143 105 EELAQKFAVR------STPTFVFFDKTGKTILELPGYM 136 (182)
T ss_pred HHHHHHhccc------cCceEEEEcCCCCEEEecCCCC
Confidence 4788888887 4699999999998777654433
No 171
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=37.82 E-value=17 Score=21.39 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=12.9
Q ss_pred ceeEEEECCCCCEEEE
Q psy13875 52 LRGLFIIDTKGVLRQI 67 (105)
Q Consensus 52 ~ratfiID~~G~V~~~ 67 (105)
.-..||+|++|+|++.
T Consensus 53 ~g~~~ivd~~G~ii~h 68 (81)
T PF02743_consen 53 NGYAFIVDKNGTIIAH 68 (81)
T ss_dssp TBEEEEEETTSBBCE-
T ss_pred CEEEEEEECCCCEEEe
Confidence 4579999999998864
No 172
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=36.42 E-value=54 Score=19.64 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=33.4
Q ss_pred CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCC-CCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875 24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTK-GVLRQITVNDLPVGRSVEEVLRLVKA 87 (105)
Q Consensus 24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~-G~V~~~~~~~~~~~~~~~eil~~l~~ 87 (105)
.+.|-.+ .|....+++.||+..+ ..|+..+++.. |.. +..... .-+.+++.++++.
T Consensus 44 ~v~f~~vd~~~~~~~~~~~~i~~~----~~P~~~~~~~~~~~k-~~~~~~---~~~~~~l~~fi~~ 101 (103)
T cd02982 44 KLLFVVVDADDFGRHLEYFGLKEE----DLPVIAIINLSDGKK-YLMPEE---ELTAESLEEFVED 101 (103)
T ss_pred eEEEEEEchHhhHHHHHHcCCChh----hCCEEEEEecccccc-cCCCcc---ccCHHHHHHHHHh
Confidence 4666655 4445789999998732 36888888763 432 211111 1256777777764
No 173
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=36.35 E-value=58 Score=19.88 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=16.0
Q ss_pred ceeEEEECCCCCEEEEEec
Q psy13875 52 LRGLFIIDTKGVLRQITVN 70 (105)
Q Consensus 52 ~ratfiID~~G~V~~~~~~ 70 (105)
.+..|+.||+|.....+.+
T Consensus 91 ~~~~~~~DP~Gn~iel~~~ 109 (112)
T cd08344 91 PDGVWFRDPDGNLLQVKVA 109 (112)
T ss_pred CCEEEEECCCCCEEEEecC
Confidence 4679999999999987765
No 174
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=35.48 E-value=81 Score=19.16 Aligned_cols=32 Identities=16% Similarity=0.179 Sum_probs=20.4
Q ss_pred eeEEEECCCCCEEEEEeccCCCC-CCHHHHHHH
Q psy13875 53 RGLFIIDTKGVLRQITVNDLPVG-RSVEEVLRL 84 (105)
Q Consensus 53 ratfiID~~G~V~~~~~~~~~~~-~~~~eil~~ 84 (105)
-.++.+|.+|.|+.+.+.+.-.. .+.+++-+.
T Consensus 31 ~V~V~v~g~g~v~~i~i~~~~~~~~~~~~L~~~ 63 (93)
T PF02575_consen 31 LVTVTVNGNGEVVDIEIDPSALRPLDPEELEDL 63 (93)
T ss_dssp TEEEEEETTS-EEEEEE-GGGGCTS-HHHHHHH
T ss_pred EEEEEEecCceEEEEEEehHhhccCCHHHHHHH
Confidence 47899999999999999764333 345554433
No 175
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=34.99 E-value=1.1e+02 Score=20.49 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=19.0
Q ss_pred HHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHH
Q psy13875 37 IATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVK 86 (105)
Q Consensus 37 vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~ 86 (105)
.+..+|+. | .|+.+| +|+ +...|.. ..+++.+.|+
T Consensus 159 ~a~~~gv~----G--vP~~vv---~g~--~~~~G~~----~~~~l~~~l~ 193 (193)
T PF01323_consen 159 EARQLGVF----G--VPTFVV---NGK--YRFFGAD----RLDELEDALQ 193 (193)
T ss_dssp HHHHTTCS----S--SSEEEE---TTT--EEEESCS----SHHHHHHHH-
T ss_pred HHHHcCCc----c--cCEEEE---CCE--EEEECCC----CHHHHHHHhC
Confidence 34455554 4 466655 555 5565533 5666666653
No 176
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=33.97 E-value=1.1e+02 Score=18.91 Aligned_cols=20 Identities=15% Similarity=0.346 Sum_probs=16.8
Q ss_pred ceeEEEECCCCCEEEEEecc
Q psy13875 52 LRGLFIIDTKGVLRQITVND 71 (105)
Q Consensus 52 ~ratfiID~~G~V~~~~~~~ 71 (105)
.+..++.||+|...-++.+.
T Consensus 92 ~~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 92 GDSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred ccEEEEECCCCCEEEEEeCC
Confidence 36889999999999888763
No 177
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=32.83 E-value=1.2e+02 Score=24.41 Aligned_cols=47 Identities=13% Similarity=0.087 Sum_probs=34.4
Q ss_pred EEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875 29 LLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA 87 (105)
Q Consensus 29 llsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~ 87 (105)
.+.|.++.+++.||+. ....+||=|||-|.+.+.. ...+.+++.|+.
T Consensus 497 ~~~d~~~~~~~~~~~~-------~~~~~LvRPDg~va~~~~~-----~~~~~~~~~l~~ 543 (547)
T PRK08132 497 VLEDADGLAAERYDAR-------PGTVYLIRPDQHVAARWRT-----PDAAAVRAALAR 543 (547)
T ss_pred cccCcccHHHHHhCCC-------CCeEEEECCCceEEEEecC-----CCHHHHHHHHHH
Confidence 3457788888888875 2568899999999887642 256777776665
No 178
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=31.62 E-value=64 Score=19.13 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=11.6
Q ss_pred ceeEEEECCCCCEEEE
Q psy13875 52 LRGLFIIDTKGVLRQI 67 (105)
Q Consensus 52 ~ratfiID~~G~V~~~ 67 (105)
.+..++.|++|.+.-.
T Consensus 92 ~~~~~~~DPdG~~ie~ 107 (108)
T PF12681_consen 92 QRSFYFIDPDGNRIEF 107 (108)
T ss_dssp EEEEEEE-TTS-EEEE
T ss_pred eEEEEEECCCCCEEEe
Confidence 4899999999987654
No 179
>KOG4498|consensus
Probab=31.27 E-value=1.5e+02 Score=21.46 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=28.7
Q ss_pred CccceeEEEECCCCCEEEEEeccCC-CCCCHHHHHHHHH
Q psy13875 49 GIPLRGLFIIDTKGVLRQITVNDLP-VGRSVEEVLRLVK 86 (105)
Q Consensus 49 G~~~ratfiID~~G~V~~~~~~~~~-~~~~~~eil~~l~ 86 (105)
++..+.+++|.+.|+|.++++.... ...+.+++++.+.
T Consensus 157 ~~~~gG~~~V~~G~~il~~h~dk~~gD~~~i~~Vl~v~~ 195 (197)
T KOG4498|consen 157 GLLSGGVLVVGRGKKILFIHVDKETGDHVPIDSVLQVVG 195 (197)
T ss_pred hHHhCCeEEEecCCeEEEEEecCCCCCCcCHHHHHHHhh
Confidence 3568999999999999999985332 2347888887764
No 180
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=31.12 E-value=67 Score=19.74 Aligned_cols=17 Identities=12% Similarity=0.100 Sum_probs=14.4
Q ss_pred ceeEEEECCCCCEEEEE
Q psy13875 52 LRGLFIIDTKGVLRQIT 68 (105)
Q Consensus 52 ~ratfiID~~G~V~~~~ 68 (105)
.|..++.||+|.++.+.
T Consensus 101 ~r~~~~~DPdGn~iei~ 117 (120)
T cd09011 101 QRVVRFYDPDKHIIEVG 117 (120)
T ss_pred cEEEEEECCCCCEEEEe
Confidence 48999999999987654
No 181
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=30.68 E-value=24 Score=23.28 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=23.7
Q ss_pred eeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhhhhhhcCCcccCCCCC
Q psy13875 53 RGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQFVDKHGEGSKRVPSG 104 (105)
Q Consensus 53 ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~~~~~~~~~~~~~~~~ 104 (105)
+..|+.|++|..+-.... ..+......||-+--+|||+
T Consensus 100 ~~~yf~DPdG~~iE~~~~--------------~~~~~~~~~~~~~~~~~~~~ 137 (144)
T cd07239 100 TFAYFLDPGGFVIEYTSE--------------LEQVDEDTTHGPVVWRPPPE 137 (144)
T ss_pred EEEEEECCCCcEEEeccC--------------ceEECCCCCcCceecCCCCc
Confidence 457899999988754432 12233334567777777775
No 182
>KOG2507|consensus
Probab=30.49 E-value=1.2e+02 Score=24.95 Aligned_cols=32 Identities=13% Similarity=0.309 Sum_probs=23.5
Q ss_pred ccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHH
Q psy13875 50 IPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLV 85 (105)
Q Consensus 50 ~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l 85 (105)
.++|+.|+|+..|+=+.+-.+.+. .+|+...|
T Consensus 76 v~vPs~ffIg~sGtpLevitg~v~----adeL~~~i 107 (506)
T KOG2507|consen 76 VSVPSIFFIGFSGTPLEVITGFVT----ADELASSI 107 (506)
T ss_pred ccccceeeecCCCceeEEeecccc----HHHHHHHH
Confidence 368999999999998888776542 55554443
No 183
>PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D.
Probab=30.24 E-value=54 Score=19.94 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=12.8
Q ss_pred eEEEECCCCCEEEEEe
Q psy13875 54 GLFIIDTKGVLRQITV 69 (105)
Q Consensus 54 atfiID~~G~V~~~~~ 69 (105)
++.+||++++|++.--
T Consensus 11 ~i~~vD~~~~I~~~n~ 26 (106)
T PF13596_consen 11 GIIFVDRNLRIRYFNP 26 (106)
T ss_dssp EEEEEETTSBEEEE-S
T ss_pred CEEEEcCCCeEEEeCh
Confidence 5788999999998764
No 184
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=29.38 E-value=35 Score=25.51 Aligned_cols=14 Identities=14% Similarity=0.192 Sum_probs=9.8
Q ss_pred ceeEEEECCCCCEE
Q psy13875 52 LRGLFIIDTKGVLR 65 (105)
Q Consensus 52 ~ratfiID~~G~V~ 65 (105)
.-.|++|.++|.++
T Consensus 275 ~~~T~~v~~~g~~~ 288 (291)
T cd01088 275 FEHTIIVREDGKEV 288 (291)
T ss_pred EEEEEEECCCCcEe
Confidence 35677887887765
No 185
>PF14433 SUKH-3: SUKH-3 immunity protein
Probab=29.22 E-value=89 Score=20.61 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=24.6
Q ss_pred ceeEEEECCCCCEEEEEe-ccCCCCCCHHHHHHHH
Q psy13875 52 LRGLFIIDTKGVLRQITV-NDLPVGRSVEEVLRLV 85 (105)
Q Consensus 52 ~ratfiID~~G~V~~~~~-~~~~~~~~~~eil~~l 85 (105)
..++++||.+|+|-...- +....+.+..+.|..|
T Consensus 102 ~~~~l~ide~Grvy~~~~~~~~~lG~~~~~al~~L 136 (142)
T PF14433_consen 102 GHAILAIDESGRVYGLDDTGLWYLGDDIDEALENL 136 (142)
T ss_pred CCEEEEEeCCCCEEEecCCeeEEeCCCHHHHHHHH
Confidence 679999999999977664 2234466777776654
No 186
>PRK06769 hypothetical protein; Validated
Probab=29.11 E-value=39 Score=23.07 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=17.2
Q ss_pred EEEECCCCCEEEEEec-----cCCCCCCHHHHHHHHHh
Q psy13875 55 LFIIDTKGVLRQITVN-----DLPVGRSVEEVLRLVKA 87 (105)
Q Consensus 55 tfiID~~G~V~~~~~~-----~~~~~~~~~eil~~l~~ 87 (105)
.++||.||+|.. +.+ ....-+.+.++|+.|++
T Consensus 6 ~~~~d~d~~~~~-~~~~~~~~~~~~~pgv~e~L~~Lk~ 42 (173)
T PRK06769 6 AIFIDRDGTIGG-DTTIHYPGSFTLFPFTKASLQKLKA 42 (173)
T ss_pred EEEEeCCCcccC-CCCCCCHHHeEECCCHHHHHHHHHH
Confidence 467888888842 211 12223456666666644
No 187
>PF03967 PRCH: Photosynthetic reaction centre, H-chain N-terminal region; InterPro: IPR015810 The photosynthetic apparatus in non-oxygenic bacteria consists of light-harvesting (LH) protein-pigment complexes LH1 and LH2, which use carotenoid and bacteriochlorophyll as primary donors []. LH1 acts as the energy collection hub, temporarily storing it before its transfer to the photosynthetic reaction centre (RC) []. Electrons are transferred from the primary donor via an intermediate acceptor (bacteriopheophytin) to the primary acceptor (quinine Qa), and finally to the secondary acceptor (quinone Qb), resulting in the formation of ubiquinol QbH2. RC uses the excitation energy to shuffle electrons across the membrane, transferring them via ubiquinol to the cytochrome bc1 complex in order to establish a proton gradient across the membrane, which is used by ATP synthetase to form ATP [, , ]. The core complex is anchored in the cell membrane, consisting of one unit of RC surrounded by LH1; in some species there may be additional subunits []. RC consists of three subunits: L (light), M (medium), and H (heavy). Subunits L and M provide the scaffolding for the chromophore, while subunit H contains a cytoplasmic domain []. In Rhodopseudomonas viridis, there is also a non-membranous tetrahaem cytochrome (4Hcyt) subunit on the periplasmic surface. This entry represents the N-terminal domain of the photosynthetic reaction centre H subunit, which includes the transmembrane domain and part of the cytoplasmic domain [].; GO: 0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, 0019684 photosynthesis, light reaction, 0030077 plasma membrane light-harvesting complex; PDB: 1RZZ_H 1PST_H 2J8D_H 3DUQ_H 1FNP_H 1KBY_H 1E14_H 2HG3_H 1UMX_H 1YST_H ....
Probab=28.95 E-value=34 Score=23.38 Aligned_cols=34 Identities=26% Similarity=0.311 Sum_probs=20.1
Q ss_pred CCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCC
Q psy13875 24 DLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGV 63 (105)
Q Consensus 24 ~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~ 63 (105)
.=.|||.+|..+ -++..|.. .++.|-||++ ++|.
T Consensus 37 REGYPLe~d~~~-~~~~~g~~----~~P~pKTF~L-~~G~ 70 (136)
T PF03967_consen 37 REGYPLESDDGG-RAKNQGFP----PLPSPKTFKL-PHGR 70 (136)
T ss_dssp SSSTSSB-TTSS-CSSSSHCC----TS---EEEEE-TTTT
T ss_pred ccCCCcccCCCC-ccccCCCC----CCCCCCEEEC-CCCC
Confidence 447999998654 23333433 5789999999 7888
No 188
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=28.95 E-value=90 Score=19.29 Aligned_cols=18 Identities=11% Similarity=0.051 Sum_probs=15.1
Q ss_pred eeEEEECCCCCEEEEEec
Q psy13875 53 RGLFIIDTKGVLRQITVN 70 (105)
Q Consensus 53 ratfiID~~G~V~~~~~~ 70 (105)
+..|+.||+|.....+.+
T Consensus 100 ~~~~~~DPdG~~iE~~~~ 117 (120)
T cd07252 100 GLIRFADPDGNRHELFWG 117 (120)
T ss_pred EEEEEECCCCCEEEEEec
Confidence 678999999998877664
No 189
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=28.79 E-value=1.3e+02 Score=17.70 Aligned_cols=41 Identities=7% Similarity=0.227 Sum_probs=24.4
Q ss_pred chHHhhhCCccccCCccceeEEEECCCCC-EEEEEeccCCCCCCHHHHHHHH
Q psy13875 35 KEIATSYGVLIESAGIPLRGLFIIDTKGV-LRQITVNDLPVGRSVEEVLRLV 85 (105)
Q Consensus 35 ~~vak~ygv~~~~~G~~~ratfiID~~G~-V~~~~~~~~~~~~~~~eil~~l 85 (105)
..++..+++. ..|+.+++..+++ -...+.| ..+.++++++|
T Consensus 63 ~~~~~~~~~~------~~Pt~~~~~~~~~~~~~~~~g----~~~~~~l~~fi 104 (104)
T cd02995 63 NDVPSEFVVD------GFPTILFFPAGDKSNPIKYEG----DRTLEDLIKFI 104 (104)
T ss_pred hhhhhhccCC------CCCEEEEEcCCCcCCceEccC----CcCHHHHHhhC
Confidence 4677777764 3699999865542 2222333 34677776653
No 190
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=27.79 E-value=71 Score=21.74 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=27.8
Q ss_pred eeEEEECCCCCEEEEEeccCCC-CCCHHHHHHHHHh
Q psy13875 53 RGLFIIDTKGVLRQITVNDLPV-GRSVEEVLRLVKA 87 (105)
Q Consensus 53 ratfiID~~G~V~~~~~~~~~~-~~~~~eil~~l~~ 87 (105)
...+.||++|.|..=++|.+.. +.+.+++-+.|++
T Consensus 20 ~~~~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~ 55 (165)
T TIGR03027 20 SGSVPVRPDGKITTPLVGDLVASGKTPTQLARDIEE 55 (165)
T ss_pred ccceEECCCCeEeecccCeEEECCCCHHHHHHHHHH
Confidence 4568999999999999887553 5788888877765
No 191
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=27.41 E-value=1.6e+02 Score=24.09 Aligned_cols=62 Identities=15% Similarity=0.098 Sum_probs=35.2
Q ss_pred CCCCCceEEeeCcc-hHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHH
Q psy13875 22 LGDLKYPLLADFKK-EIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLV 85 (105)
Q Consensus 22 ~~~l~fpllsD~~~-~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l 85 (105)
+.++.--+|||... -+...=.+..- ....--.++|||.|+=...|.+..-..+|..|+.+++
T Consensus 141 l~~~~~vVLSDY~KG~L~~~q~~I~~--ar~~~~pVLvDPKg~Df~~Y~GAtLiTPN~~E~~~~v 203 (467)
T COG2870 141 LKSFDALVLSDYAKGVLTNVQKMIDL--AREAGIPVLVDPKGKDFEKYRGATLITPNLKEFEEAV 203 (467)
T ss_pred hhcCCEEEEeccccccchhHHHHHHH--HHHcCCcEEECCCCcchhhhCCCeecCCCHHHHHHHH
Confidence 34678889999863 22220111100 0011234799999987777776544456777766554
No 192
>KOG3559|consensus
Probab=26.94 E-value=55 Score=26.73 Aligned_cols=15 Identities=20% Similarity=0.465 Sum_probs=13.2
Q ss_pred eEEEECCCCCEEEEE
Q psy13875 54 GLFIIDTKGVLRQIT 68 (105)
Q Consensus 54 atfiID~~G~V~~~~ 68 (105)
-.||++++|+|.|+-
T Consensus 91 F~fvva~dGkimYIS 105 (598)
T KOG3559|consen 91 FIFVVAPDGKIMYIS 105 (598)
T ss_pred eEEEEeCCCCEEEEe
Confidence 479999999999974
No 193
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=26.58 E-value=43 Score=25.19 Aligned_cols=14 Identities=7% Similarity=0.174 Sum_probs=9.7
Q ss_pred ceeEEEECCCCCEE
Q psy13875 52 LRGLFIIDTKGVLR 65 (105)
Q Consensus 52 ~ratfiID~~G~V~ 65 (105)
.-.|++|.++|.++
T Consensus 279 ~~~Tv~v~~~g~~~ 292 (295)
T TIGR00501 279 WEHTILVEEHGKEV 292 (295)
T ss_pred EEEEEEECCCccEE
Confidence 35677887887754
No 194
>PF14903 WG_beta_rep: WG containing repeat
Probab=26.44 E-value=48 Score=15.98 Aligned_cols=12 Identities=25% Similarity=0.285 Sum_probs=9.2
Q ss_pred EECCCCCEEEEE
Q psy13875 57 IIDTKGVLRQIT 68 (105)
Q Consensus 57 iID~~G~V~~~~ 68 (105)
+||.+|+++--.
T Consensus 3 ~id~~G~~vi~~ 14 (35)
T PF14903_consen 3 YIDKNGKIVIPP 14 (35)
T ss_pred EEeCCCCEEEEc
Confidence 689999987543
No 195
>cd07561 Peptidase_S41_CPP_like C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.
Probab=26.08 E-value=1.7e+02 Score=21.61 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=28.8
Q ss_pred ceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhhh
Q psy13875 52 LRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQF 90 (105)
Q Consensus 52 ~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~~ 90 (105)
-|-+||.+.+++|-|+.+...... ..+++.++++.++.
T Consensus 54 ~~fs~~~~~~~~IGYi~i~~F~~~-~~~~l~~a~~~l~~ 91 (256)
T cd07561 54 DRFSYIVDGGKKVGYLVYNSFTSG-YDDELNQAFAEFKA 91 (256)
T ss_pred CceEEEeeCCCcEEEEEECccccc-hHHHHHHHHHHHHH
Confidence 489999999999999999765432 45667777776653
No 196
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=25.55 E-value=1.5e+02 Score=19.40 Aligned_cols=47 Identities=15% Similarity=0.295 Sum_probs=29.7
Q ss_pred cchHHhhhCCccccCCccceeEEEECCCCCE-EEEEeccCCCCCCHHHHHHHHHh
Q psy13875 34 KKEIATSYGVLIESAGIPLRGLFIIDTKGVL-RQITVNDLPVGRSVEEVLRLVKA 87 (105)
Q Consensus 34 ~~~vak~ygv~~~~~G~~~ratfiID~~G~V-~~~~~~~~~~~~~~~eil~~l~~ 87 (105)
+.+++++|||..+ | .|+.++.. +|.- ..+.+ .. .+|+.+.++++|.+
T Consensus 67 ~~~L~~~y~I~~~--g--yPTl~lF~-~g~~~~~~~Y-~G-~~r~~~~lv~~v~~ 114 (116)
T cd03007 67 NMELGERYKLDKE--S--YPVIYLFH-GGDFENPVPY-SG-ADVTVDALQRFLKG 114 (116)
T ss_pred hHHHHHHhCCCcC--C--CCEEEEEe-CCCcCCCccC-CC-CcccHHHHHHHHHh
Confidence 4679999999632 3 59888884 4531 11111 11 13789999988865
No 197
>PF11453 DUF2950: Protein of unknown function (DUF2950); InterPro: IPR021556 This is a bacterial family of uncharacterised proteins.
Probab=25.46 E-value=93 Score=23.66 Aligned_cols=31 Identities=10% Similarity=0.125 Sum_probs=21.5
Q ss_pred ceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875 52 LRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA 87 (105)
Q Consensus 52 ~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~ 87 (105)
-=-||+||.+|+|-...+|+ +...+-+.|+.
T Consensus 231 GVmtF~Vn~~g~VYqkDLG~-----~t~~~A~ai~~ 261 (271)
T PF11453_consen 231 GVMTFMVNQDGQVYQKDLGP-----DTAAKAAAITS 261 (271)
T ss_pred ceEEEEECCCCcEEecccCc-----chHHHhhhhhc
Confidence 35799999999997776653 44555555544
No 198
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=25.29 E-value=1.2e+02 Score=15.99 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=19.1
Q ss_pred ceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHH
Q psy13875 52 LRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLV 85 (105)
Q Consensus 52 ~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l 85 (105)
.+..+|+|.+|+++.+.. ..++++++
T Consensus 30 ~~~~~V~d~~~~~~G~is--------~~dl~~~l 55 (57)
T PF00571_consen 30 ISRLPVVDEDGKLVGIIS--------RSDLLKAL 55 (57)
T ss_dssp SSEEEEESTTSBEEEEEE--------HHHHHHHH
T ss_pred CcEEEEEecCCEEEEEEE--------HHHHHhhh
Confidence 588999999999887653 45555554
No 199
>PF08750 CNP1: CNP1-like family; InterPro: IPR014861 This group of proteins are likely to be lipoproteins. CNP1 (cryptic neisserial protein) has been expressed in Escherichia coli and shown to be localised periplasmicly [].
Probab=25.17 E-value=65 Score=21.95 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=15.6
Q ss_pred eeEEEECCCCCEEEEEeccC
Q psy13875 53 RGLFIIDTKGVLRQITVNDL 72 (105)
Q Consensus 53 ratfiID~~G~V~~~~~~~~ 72 (105)
+.++=|.+||.|||+.+...
T Consensus 41 ~~Sisvg~DgvVRY~lv~~S 60 (139)
T PF08750_consen 41 PKSISVGPDGVVRYTLVVRS 60 (139)
T ss_pred hhheEECCCCcEEEEEEEcC
Confidence 56666779999999998543
No 200
>PF02643 DUF192: Uncharacterized ACR, COG1430; InterPro: IPR003795 This entry describes proteins of unknown function.; PDB: 3M7A_B 3PJY_B.
Probab=24.86 E-value=85 Score=20.01 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=13.8
Q ss_pred eEEEECCCCCEEEEEecc
Q psy13875 54 GLFIIDTKGVLRQITVND 71 (105)
Q Consensus 54 atfiID~~G~V~~~~~~~ 71 (105)
..+.||.+|+|+.+....
T Consensus 51 Di~fld~~g~Vv~i~~~~ 68 (108)
T PF02643_consen 51 DIAFLDSDGRVVKIERMV 68 (108)
T ss_dssp EEEEE-TTSBEEEEEEEE
T ss_pred EEEEECCCCeEEEEEccC
Confidence 457789999999998753
No 201
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=24.78 E-value=98 Score=19.02 Aligned_cols=16 Identities=25% Similarity=0.548 Sum_probs=13.4
Q ss_pred ceeEEEECCCCCEEEE
Q psy13875 52 LRGLFIIDTKGVLRQI 67 (105)
Q Consensus 52 ~ratfiID~~G~V~~~ 67 (105)
.|..|+.||+|..+..
T Consensus 101 ~~~~~~~DPdG~~ie~ 116 (120)
T cd08350 101 MREFALVDPDGNLLRF 116 (120)
T ss_pred eeEEEEECCCCCEEEe
Confidence 5889999999987654
No 202
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=24.44 E-value=1.4e+02 Score=18.20 Aligned_cols=19 Identities=11% Similarity=0.188 Sum_probs=15.5
Q ss_pred ceeEEEECCCCCEEEEEec
Q psy13875 52 LRGLFIIDTKGVLRQITVN 70 (105)
Q Consensus 52 ~ratfiID~~G~V~~~~~~ 70 (105)
.+..|+-||+|...-...+
T Consensus 92 ~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 92 GKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred ceEEEEECCCCCEEEEEec
Confidence 4678999999998877664
No 203
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=24.22 E-value=1.1e+02 Score=18.71 Aligned_cols=17 Identities=24% Similarity=0.258 Sum_probs=13.9
Q ss_pred ceeEEEECCCCCEEEEE
Q psy13875 52 LRGLFIIDTKGVLRQIT 68 (105)
Q Consensus 52 ~ratfiID~~G~V~~~~ 68 (105)
.+..++-||+|.+...+
T Consensus 105 ~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 105 QRYAIVKDPDGNLVDLF 121 (122)
T ss_pred CEEEEEECCCCCEEEEe
Confidence 47789999999987654
No 204
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=23.83 E-value=1.3e+02 Score=18.18 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=15.3
Q ss_pred ceeEEEECCCCCEEEEEec
Q psy13875 52 LRGLFIIDTKGVLRQITVN 70 (105)
Q Consensus 52 ~ratfiID~~G~V~~~~~~ 70 (105)
.+..++.||+|..+.+..+
T Consensus 99 ~~~~~~~DP~G~~iel~~~ 117 (120)
T cd08362 99 GYGFRFFDPDGRLIEFSAD 117 (120)
T ss_pred ceEEEEECCCCCEEEEEec
Confidence 4678999999998877654
No 205
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=23.58 E-value=2.2e+02 Score=18.66 Aligned_cols=55 Identities=13% Similarity=0.170 Sum_probs=33.8
Q ss_pred CCCceEEeeCc--chHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHH
Q psy13875 24 DLKYPLLADFK--KEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVK 86 (105)
Q Consensus 24 ~l~fpllsD~~--~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~ 86 (105)
.+.|-. +|.+ ..+.+.||+.. -..|+..|++....- +.+. . ....+.+.|.++++
T Consensus 127 ~~~f~~-~d~~~~~~~~~~~~i~~----~~~P~~vi~~~~~~~-~~~~-~-~~~~~~~~i~~Fl~ 183 (184)
T PF13848_consen 127 KINFVY-VDADDFPRLLKYFGIDE----DDLPALVIFDSNKGK-YYYL-P-EGEITPESIEKFLN 183 (184)
T ss_dssp TSEEEE-EETTTTHHHHHHTTTTT----SSSSEEEEEETTTSE-EEE----SSCGCHHHHHHHHH
T ss_pred eEEEEE-eehHHhHHHHHHcCCCC----ccCCEEEEEECCCCc-EEcC-C-CCCCCHHHHHHHhc
Confidence 455544 4554 67888888863 247999999965543 2222 1 22446777777765
No 206
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=23.51 E-value=1.2e+02 Score=18.33 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=13.6
Q ss_pred ceeEEEECCCCCEEEEE
Q psy13875 52 LRGLFIIDTKGVLRQIT 68 (105)
Q Consensus 52 ~ratfiID~~G~V~~~~ 68 (105)
.+..|+.||+|.++-+.
T Consensus 107 ~~~~~~~DPdG~~iE~~ 123 (125)
T cd08357 107 QETFFLKDPSGNALEFK 123 (125)
T ss_pred eeEEEEECCCCCEEEEe
Confidence 37899999999887543
No 207
>PRK13907 rnhA ribonuclease H; Provisional
Probab=23.20 E-value=2.1e+02 Score=18.15 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=27.1
Q ss_pred eEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhhhhhhcC
Q psy13875 54 GLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQFVDKHG 95 (105)
Q Consensus 54 atfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~~~~~~~ 95 (105)
+.+|.|.+|.+...... .....+..|+...+.+|+...+.|
T Consensus 20 G~vi~~~~~~~~~~~~~-~~~tn~~AE~~All~aL~~a~~~g 60 (128)
T PRK13907 20 GVFIKGVQPAVQLSLPL-GTMSNHEAEYHALLAALKYCTEHN 60 (128)
T ss_pred EEEEEECCeeEEEEecc-cccCCcHHHHHHHHHHHHHHHhCC
Confidence 45567777876654321 122347888999999988877665
No 208
>smart00701 PGRP Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. The bacteriophage molecule, but not its moth homologue, has been shown to have N-acetylmuramoyl-L-alanine amidase activity. One member of this family, Tag7, is a cytokine.
Probab=23.04 E-value=49 Score=22.25 Aligned_cols=15 Identities=13% Similarity=0.255 Sum_probs=12.6
Q ss_pred cceeEEEECCCCCEE
Q psy13875 51 PLRGLFIIDTKGVLR 65 (105)
Q Consensus 51 ~~ratfiID~~G~V~ 65 (105)
.+...|+||++|+|-
T Consensus 62 DIgYhflI~~dG~Iy 76 (142)
T smart00701 62 DIGYNFLVGGDGKVY 76 (142)
T ss_pred CcCCeEEEcCCCEEE
Confidence 367899999999874
No 209
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=22.92 E-value=1.5e+02 Score=17.60 Aligned_cols=19 Identities=37% Similarity=0.441 Sum_probs=15.9
Q ss_pred ceeEEEECCCCCEEEEEec
Q psy13875 52 LRGLFIIDTKGVLRQITVN 70 (105)
Q Consensus 52 ~ratfiID~~G~V~~~~~~ 70 (105)
.+..++.||+|.+..+...
T Consensus 96 ~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 96 GRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred ceEEEEECCCCCEEEEEEc
Confidence 4788999999999887754
No 210
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=22.90 E-value=59 Score=25.64 Aligned_cols=36 Identities=11% Similarity=0.153 Sum_probs=22.0
Q ss_pred ceeEEEECCCCCEEEEEec-c---CCCC--CCHHHHHHHHHh
Q psy13875 52 LRGLFIIDTKGVLRQITVN-D---LPVG--RSVEEVLRLVKA 87 (105)
Q Consensus 52 ~ratfiID~~G~V~~~~~~-~---~~~~--~~~~eil~~l~~ 87 (105)
.-.|++|.++|.++-.-.. + .... -.-++++..|..
T Consensus 320 f~~Tv~v~~~g~~~~t~~~~~~~~~~s~~~~~d~~~~~~l~~ 361 (389)
T TIGR00495 320 FKFTVLLMPNGPMRITSGEFEPDLYKSEMEVQDPEIKALLAS 361 (389)
T ss_pred EEEEEEECCCCcEEeCCCCCCHhhcCCCCCCCCHHHHHHHhC
Confidence 5679999999998765421 1 0111 235667777654
No 211
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=22.84 E-value=1.3e+02 Score=18.53 Aligned_cols=16 Identities=25% Similarity=0.302 Sum_probs=13.0
Q ss_pred eeEEEECCCCCEEEEE
Q psy13875 53 RGLFIIDTKGVLRQIT 68 (105)
Q Consensus 53 ratfiID~~G~V~~~~ 68 (105)
+..|+.||||.++-+.
T Consensus 107 ~~~~~~DPdG~~ie~~ 122 (124)
T cd09012 107 YGRSFADLDGHLWEVL 122 (124)
T ss_pred EEEEEECCCCCEEEEE
Confidence 5789999999987654
No 212
>PRK06184 hypothetical protein; Provisional
Probab=22.66 E-value=2.4e+02 Score=22.44 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=33.2
Q ss_pred EeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875 30 LADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ 89 (105)
Q Consensus 30 lsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~ 89 (105)
+.|.++.+.+.||+. .-+.+||=|||-|.+..-. ...+.+++.++.+-
T Consensus 448 ~~d~~g~~~~~~~~~-------~~~~~lvRPDg~v~~~~~~-----~~~~~~~~~l~~~~ 495 (502)
T PRK06184 448 LVDDAGHFRDAYGLT-------GGTLVLVRPDGYVGLIAAG-----DDAAALEAYLARVG 495 (502)
T ss_pred eeCCCccHHHHhcCC-------CCcEEEECCCcceEEEecC-----CCHHHHHHHHHHhc
Confidence 456677777777764 3468899999999876421 26777777776653
No 213
>cd06583 PGRP Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls. PGRPs have been divided into three classes: short PGRPs (PGRP-S), that are small (20 kDa) extracellular proteins; intermediate PGRPs (PGRP-I) that are 40-45 kDa and are predicted to be transmembrane proteins; and long PGRPs (PGRP-L), up to 90 kDa, which may be either intracellular or transmembrane. Several structures of PGRPs are known in insects and mammals, some bound with substrates like Muramyl Tripeptide (MTP) or Tracheal Cytotoxin (TCT). The substrate binding site is conserved in PGRP-LCx, PGRP-LE, and PGRP-Ialpha proteins. This family includes Zn-dependent N-Acetylmuramoyl-L-alanine Amidase, EC:3.5.1.28. This enzyme cleaves the amide bond between N-acetylmuramoyl and L-amino acids, preferentially D-lactyl-L-Ala, in bacterial cell walls. The structure for the bacteriophage T7 lysozyme shows that two of
Probab=22.54 E-value=80 Score=19.72 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=13.0
Q ss_pred ceeEEEECCCCCEEEE
Q psy13875 52 LRGLFIIDTKGVLRQI 67 (105)
Q Consensus 52 ~ratfiID~~G~V~~~ 67 (105)
.-..|+||++|+|...
T Consensus 36 ~~~H~~I~~~G~i~q~ 51 (126)
T cd06583 36 ISYHFLVGGDGRIYQG 51 (126)
T ss_pred cCceEEEcCCCEEEEE
Confidence 5789999999987653
No 214
>PF12105 SpoU_methylas_C: SpoU, rRNA methylase, C-terminal; InterPro: IPR022724 This domain is found in bacteria and is about 60 amino acids in length. It is found in association with PF00588 from PFAM. This domain has a conserved LFE sequence motif. Some members of the Pfam family SpoU_methylase, PF00588 from PFAM, carry this very distinctive sequence at their extreme C terminus. The exact function of this domain is not known. ; GO: 0009020 tRNA (guanosine-2'-O-)-methyltransferase activity; PDB: 1ZJR_A.
Probab=22.29 E-value=29 Score=20.13 Aligned_cols=14 Identities=43% Similarity=0.539 Sum_probs=0.0
Q ss_pred CCCceEEeeCcchHH
Q psy13875 24 DLKYPLLADFKKEIA 38 (105)
Q Consensus 24 ~l~fpllsD~~~~va 38 (105)
+++||-|. .+|+|.
T Consensus 39 g~pYP~Ld-e~GeI~ 52 (57)
T PF12105_consen 39 GLPYPPLD-EDGEII 52 (57)
T ss_dssp ---------------
T ss_pred cccccccc-cccccc
Confidence 77888764 455443
No 215
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=22.21 E-value=2.7e+02 Score=19.61 Aligned_cols=41 Identities=17% Similarity=0.280 Sum_probs=26.8
Q ss_pred HhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCC---CCHHHHHHHH
Q psy13875 38 ATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVG---RSVEEVLRLV 85 (105)
Q Consensus 38 ak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~---~~~~eil~~l 85 (105)
+..|++. ..|+.+|. ++|.++...+|....+ -..+++...|
T Consensus 145 ~~~~~i~------~lPTlliy-k~G~~v~~ivG~~~~gg~~~~~~~lE~~L 188 (192)
T cd02988 145 IPNYPDK------NLPTILVY-RNGDIVKQFIGLLEFGGMNTTMEDLEWLL 188 (192)
T ss_pred HhhCCCC------CCCEEEEE-ECCEEEEEEeCchhhCCCCCCHHHHHHHH
Confidence 4566654 36877777 8999999999865443 2344444444
No 216
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=22.02 E-value=2e+02 Score=18.23 Aligned_cols=58 Identities=9% Similarity=-0.044 Sum_probs=34.8
Q ss_pred CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875 24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF 88 (105)
Q Consensus 24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l 88 (105)
++.|-++ +|..+.+++.||+..+ ..|+..|++-++.-.|.. ....-..+.|.++++..
T Consensus 49 ki~Fv~~d~~~~~~~~~~fgl~~~----~~P~i~i~~~~~~~Ky~~---~~~~~t~~~i~~Fv~~~ 107 (111)
T cd03072 49 AINFLTADGDKFRHPLLHLGKTPA----DLPVIAIDSFRHMYLFPD---FEDVYVPGKLKQFVLDL 107 (111)
T ss_pred eEEEEEEechHhhhHHHHcCCCHh----HCCEEEEEcchhcCcCCC---CccccCHHHHHHHHHHH
Confidence 5677664 2333458899998743 268888888766333331 22233567777776654
No 217
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=21.83 E-value=1.1e+02 Score=18.89 Aligned_cols=16 Identities=44% Similarity=0.659 Sum_probs=13.3
Q ss_pred ceeEEEECCCCCEEEE
Q psy13875 52 LRGLFIIDTKGVLRQI 67 (105)
Q Consensus 52 ~ratfiID~~G~V~~~ 67 (105)
.|..++.||+|..+.+
T Consensus 96 ~r~f~~~DPdGn~~~~ 111 (113)
T cd08356 96 GREFFLHDPSGVLWHI 111 (113)
T ss_pred cEEEEEECCCccEEEe
Confidence 4889999999987653
No 218
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=21.77 E-value=1.2e+02 Score=18.68 Aligned_cols=26 Identities=4% Similarity=0.087 Sum_probs=18.7
Q ss_pred chHHhhhCCccccCCccceeEEEECCCCCEEE
Q psy13875 35 KEIATSYGVLIESAGIPLRGLFIIDTKGVLRQ 66 (105)
Q Consensus 35 ~~vak~ygv~~~~~G~~~ratfiID~~G~V~~ 66 (105)
.++++.|++. ....+.+++.||+++.
T Consensus 28 ~K~~~~l~~~------~~~~~lvL~eDGT~Vd 53 (78)
T cd06539 28 SKTLDALVIT------SGLVTLVLEEDGTVVD 53 (78)
T ss_pred HHHHHHhCCC------CCCcEEEEeCCCCEEc
Confidence 4566666654 2368899999999884
No 219
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=21.72 E-value=2.2e+02 Score=19.48 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=23.9
Q ss_pred cceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875 51 PLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF 88 (105)
Q Consensus 51 ~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l 88 (105)
+.|+.-|+ +||.+++..--..-.+++.++|.+-|...
T Consensus 95 SSPS~ALf-KdGelvh~ieRh~IEGr~a~~Ia~~L~~a 131 (136)
T PF06491_consen 95 SSPSIALF-KDGELVHFIERHHIEGRPAEEIAENLQDA 131 (136)
T ss_dssp -SSEEEEE-ETTEEEEEE-GGGTTTS-HHHHHHHHHHH
T ss_pred CCchheee-eCCEEEEEeehhhcCCCCHHHHHHHHHHH
Confidence 47887777 89999886543322467888887777653
No 220
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=21.63 E-value=83 Score=21.30 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=17.2
Q ss_pred EEEECCCCCEEEEEec-----cCCCCCCHHHHHHHHHh
Q psy13875 55 LFIIDTKGVLRQITVN-----DLPVGRSVEEVLRLVKA 87 (105)
Q Consensus 55 tfiID~~G~V~~~~~~-----~~~~~~~~~eil~~l~~ 87 (105)
.+++|.||++..-.-+ .....+.+.++|+.|++
T Consensus 3 ~~~~D~Dgtl~~~~~~~~~~~~~~~~pgv~e~L~~Lk~ 40 (176)
T TIGR00213 3 AIFLDRDGTINIDHGYVHEIDNFEFIDGVIDALRELKK 40 (176)
T ss_pred EEEEeCCCCEeCCCCCCCCHHHeEECCCHHHHHHHHHH
Confidence 4677888888731100 11112356666666654
No 221
>PF13186 SPASM: Iron-sulfur cluster-binding domain
Probab=21.59 E-value=81 Score=17.08 Aligned_cols=16 Identities=19% Similarity=0.113 Sum_probs=12.7
Q ss_pred ceeEEEECCCCCEEEE
Q psy13875 52 LRGLFIIDTKGVLRQI 67 (105)
Q Consensus 52 ~ratfiID~~G~V~~~ 67 (105)
....+.|+++|.|.--
T Consensus 4 ~~~~~~I~~dG~v~pC 19 (64)
T PF13186_consen 4 GWNSLYIDPDGDVYPC 19 (64)
T ss_pred cCeEEEEeeCccEEeC
Confidence 3677889999998764
No 222
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=21.46 E-value=1.6e+02 Score=17.52 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=15.7
Q ss_pred ceeEEEECCCCCEEEEEec
Q psy13875 52 LRGLFIIDTKGVLRQITVN 70 (105)
Q Consensus 52 ~ratfiID~~G~V~~~~~~ 70 (105)
.+..|+.||+|...-++.+
T Consensus 93 ~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 93 GRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred ceEEEEECCCCCEEEEEeC
Confidence 4788999999998877754
No 223
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=21.45 E-value=62 Score=21.95 Aligned_cols=10 Identities=30% Similarity=0.763 Sum_probs=5.4
Q ss_pred EEECCCCCEE
Q psy13875 56 FIIDTKGVLR 65 (105)
Q Consensus 56 fiID~~G~V~ 65 (105)
+++|.||+|.
T Consensus 6 ~~~d~~~t~~ 15 (181)
T PRK08942 6 IFLDRDGVIN 15 (181)
T ss_pred EEEECCCCcc
Confidence 4555666543
No 224
>PF01510 Amidase_2: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002502 Proteins families containing this domain include zinc amidases that have N-acetylmuramoyl-L-alanine amidase activity 3.5.1.28 from EC This enzyme domain cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls (preferentially: D-lactyl-L-Ala). The structure is known for the Bacteriophage T7 structure and shows that two of the conserved histidines are zinc binding.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 2RKQ_A 2EAV_A 2EAX_B 2XZ4_A 3TRU_A 3NKW_B 3QS0_B 3NW3_C 2Z9N_C 3NNO_B ....
Probab=21.37 E-value=62 Score=20.49 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=11.3
Q ss_pred ceeEEEECCCCCEE
Q psy13875 52 LRGLFIIDTKGVLR 65 (105)
Q Consensus 52 ~ratfiID~~G~V~ 65 (105)
.-..|+||++|+|.
T Consensus 37 ~s~H~~I~~dG~i~ 50 (132)
T PF01510_consen 37 ASYHYVIDRDGTIY 50 (132)
T ss_dssp -SSSEEEETTSEEE
T ss_pred ceEEEEEecCCeEE
Confidence 46789999999984
No 225
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=21.18 E-value=1.2e+02 Score=21.02 Aligned_cols=45 Identities=20% Similarity=0.138 Sum_probs=31.4
Q ss_pred CceEEeeCcchHHhhhCCccccC---CccceeEEEECCCCCEEEEEeccC
Q psy13875 26 KYPLLADFKKEIATSYGVLIESA---GIPLRGLFIIDTKGVLRQITVNDL 72 (105)
Q Consensus 26 ~fpllsD~~~~vak~ygv~~~~~---G~~~ratfiID~~G~V~~~~~~~~ 72 (105)
.-|.++| .++|+.|++..+.. --....|+--|.+|+|+.+..+..
T Consensus 95 ~~~~l~~--dElA~sF~l~~e~i~qLr~~kiltVh~De~G~Ii~V~~~~~ 142 (153)
T PRK14584 95 HRPDLDD--DELASSFALSPELIAQLKSGSCLTLYNDEHGHIIDVKEGLQ 142 (153)
T ss_pred CCCCCCh--HHHHHHcCCCHHHHHHHHhCCeEEEEECCCCCEEEeecCCC
Confidence 3344443 46999999975421 024678889999999999987644
No 226
>PF13511 DUF4124: Domain of unknown function (DUF4124)
Probab=21.02 E-value=71 Score=17.73 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=10.9
Q ss_pred EECCCCCEEEEEe
Q psy13875 57 IIDTKGVLRQITV 69 (105)
Q Consensus 57 iID~~G~V~~~~~ 69 (105)
-+|.+|+|.|...
T Consensus 18 ~~D~~G~v~ysd~ 30 (60)
T PF13511_consen 18 WVDENGVVHYSDT 30 (60)
T ss_pred EECCCCCEEECcc
Confidence 4699999998776
No 227
>PF12166 DUF3595: Protein of unknown function (DUF3595); InterPro: IPR021999 This family of proteins is functionally uncharacterised.This family of proteins is found in eukaryotes. Proteins in this family are typically between 578 and 2525 amino acids in length.
Probab=21.01 E-value=2.1e+02 Score=22.43 Aligned_cols=67 Identities=18% Similarity=0.494 Sum_probs=42.9
Q ss_pred CCCCceEEeeCcc----hHHhhhCCccccCCccceeEEEECC------CCCEEEEEeccCCCCCCHHHHHHHHHhhhhhh
Q psy13875 23 GDLKYPLLADFKK----EIATSYGVLIESAGIPLRGLFIIDT------KGVLRQITVNDLPVGRSVEEVLRLVKAFQFVD 92 (105)
Q Consensus 23 ~~l~fpllsD~~~----~vak~ygv~~~~~G~~~ratfiID~------~G~V~~~~~~~~~~~~~~~eil~~l~~l~~~~ 92 (105)
.++.|-++||.-. .....||+. |+..=-+++|.+ .|....+.+.++ ++++.+++..+.+..+|
T Consensus 318 ~~l~~~v~sdkv~~~~~~~l~~~gIi----glY~svVl~igrfiR~~~~~~~~~i~feel---p~~d~ll~lc~dI~~aR 390 (422)
T PF12166_consen 318 NGLEFVVFSDKVSPSSLSFLSGYGII----GLYVSVVLVIGRFIRSFFSGISHRIMFEEL---PNPDRLLKLCQDIYLAR 390 (422)
T ss_pred CCcEEEEEECCCCCchhhheecccce----eeeEEEEeEhHHHHHHHHcCccceEEEcCC---CChHHHHHHHHHHHHHH
Confidence 4778889999753 445566766 654444444433 344444444333 58999999998888888
Q ss_pred hcCC
Q psy13875 93 KHGE 96 (105)
Q Consensus 93 ~~~~ 96 (105)
+.|+
T Consensus 391 e~g~ 394 (422)
T PF12166_consen 391 EEGD 394 (422)
T ss_pred hcCc
Confidence 7764
No 228
>KOG2792|consensus
Probab=20.88 E-value=57 Score=24.87 Aligned_cols=48 Identities=17% Similarity=0.296 Sum_probs=29.8
Q ss_pred chHHhhhCCcccc----CC---c--cceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHH
Q psy13875 35 KEIATSYGVLIES----AG---I--PLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVK 86 (105)
Q Consensus 35 ~~vak~ygv~~~~----~G---~--~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~ 86 (105)
.+||++|.|+... .+ + ..=..|||||+|..+..+ | ..++.+++.+.|.
T Consensus 216 k~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~-G---rN~~~~~~~~~I~ 272 (280)
T KOG2792|consen 216 KQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYY-G---RNYDADELADSIL 272 (280)
T ss_pred HHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhh-c---ccCCHHHHHHHHH
Confidence 3577777776421 01 1 134579999999877644 3 2456777776653
No 229
>PF09631 Sen15: Sen15 protein; InterPro: IPR018593 The Sen15 subunit of the tRNA intron-splicing endonuclease is one of the two structural subunits of this heterotetrameric enzyme. Residues 36-157 of this subunit possess a novel homodimeric fold. Each monomer consists of three alpha-helices and a mixed antiparallel/parallel beta-sheet. Two monomers of Sen15 fold with two monomers of Sen34, one of the two catalytic subunits, to form an alpha2-beta2 tetramer as part of the functional endonuclease assembly []. ; PDB: 2GW6_B.
Probab=20.79 E-value=95 Score=19.51 Aligned_cols=16 Identities=19% Similarity=0.374 Sum_probs=11.0
Q ss_pred EEECCCCCEEEEEecc
Q psy13875 56 FIIDTKGVLRQITVND 71 (105)
Q Consensus 56 fiID~~G~V~~~~~~~ 71 (105)
=|+|.||+|+|-.+..
T Consensus 78 Aiv~~DsTiVYY~i~~ 93 (101)
T PF09631_consen 78 AIVDDDSTIVYYKIHD 93 (101)
T ss_dssp EEE-TTS-EEEEEEE-
T ss_pred EEEcCCCCEEEEEEeC
Confidence 4789999999988854
No 230
>PF08741 YwhD: YwhD family; InterPro: IPR014852 The members of this entry are currently uncharacterised. They are around 170 amino acids in length.
Probab=20.75 E-value=1.4e+02 Score=21.02 Aligned_cols=49 Identities=8% Similarity=0.104 Sum_probs=32.1
Q ss_pred CCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCC
Q psy13875 24 DLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPV 74 (105)
Q Consensus 24 ~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~ 74 (105)
++.|.++++..-.--+-||+-.- .+..=+-+|||.++.-.++..+.+..
T Consensus 3 ~~~fnIi~~d~tdgH~G~g~Gsi--~L~nvspViID~e~~ea~vD~GAmHA 51 (163)
T PF08741_consen 3 KIGFNIIKNDSTDGHGGFGAGSI--SLNNVSPVIIDVEEGEAFVDMGAMHA 51 (163)
T ss_pred CcceEEecCCCCCCCCCcceeeE--eccccccEEEecCCCEEEEecccccc
Confidence 67899998653333445655311 23456778999987778888887753
No 231
>PLN02798 nitrilase
Probab=20.58 E-value=1.1e+02 Score=22.39 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=13.8
Q ss_pred ceeEEEECCCCCEEEEEe
Q psy13875 52 LRGLFIIDTKGVLRQITV 69 (105)
Q Consensus 52 ~ratfiID~~G~V~~~~~ 69 (105)
.-+.++|+++|.|+..+.
T Consensus 104 yNs~~vi~~~G~i~~~y~ 121 (286)
T PLN02798 104 YNTHVLIDDSGEIRSSYR 121 (286)
T ss_pred EEEEEEECCCCCEEEEEE
Confidence 456889999999876553
No 232
>PLN02309 5'-adenylylsulfate reductase
Probab=20.58 E-value=2.2e+02 Score=23.17 Aligned_cols=56 Identities=21% Similarity=0.334 Sum_probs=34.5
Q ss_pred CCceEE-ee-CcchHHh-hhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875 25 LKYPLL-AD-FKKEIAT-SYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ 89 (105)
Q Consensus 25 l~fpll-sD-~~~~vak-~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~ 89 (105)
+.|--+ .| .+..+++ .|++. ..|+.++..+... ..+.+ . ...++++.++.++++++
T Consensus 399 V~f~kVD~d~~~~~la~~~~~I~------~~PTil~f~~g~~-~~v~Y-~-~~~R~~~~L~~fv~~~~ 457 (457)
T PLN02309 399 VKVAKFRADGDQKEFAKQELQLG------SFPTILLFPKNSS-RPIKY-P-SEKRDVDSLLSFVNSLR 457 (457)
T ss_pred eEEEEEECCCcchHHHHhhCCCc------eeeEEEEEeCCCC-Ceeec-C-CCCcCHHHHHHHHHHhC
Confidence 444433 34 4456775 58887 3699999954433 22222 1 12579999999998763
No 233
>PRK09781 hypothetical protein; Provisional
Probab=20.57 E-value=34 Score=23.80 Aligned_cols=12 Identities=8% Similarity=0.529 Sum_probs=10.0
Q ss_pred CCchHHHHHHHH
Q psy13875 2 KFVDEGDEVWLE 13 (105)
Q Consensus 2 ~~~~~sh~~w~~ 13 (105)
+.++++||.||+
T Consensus 131 ~~~~~s~K~WCK 142 (181)
T PRK09781 131 HYANFSHKSWCK 142 (181)
T ss_pred hhcCccchhhhh
Confidence 567899999994
No 234
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=20.53 E-value=2.4e+02 Score=17.82 Aligned_cols=19 Identities=11% Similarity=0.347 Sum_probs=15.9
Q ss_pred ceeEEEECCCCCEEEEEec
Q psy13875 52 LRGLFIIDTKGVLRQITVN 70 (105)
Q Consensus 52 ~ratfiID~~G~V~~~~~~ 70 (105)
.++.|+.|++|...-+..+
T Consensus 97 ~~~~~f~DPdG~~iEl~~~ 115 (131)
T cd08363 97 RKSIYFTDPDGHKLEVHTG 115 (131)
T ss_pred ceEEEEECCCCCEEEEecC
Confidence 4889999999998877753
No 235
>PF11954 DUF3471: Domain of unknown function (DUF3471); InterPro: IPR021860 This entry represents the C-terminal domain of a family of peptidases which belong to MEROPS peptidase family S12, clan SE. The structure of the Pyrococcus abyssi Pab87 peptidase has been determined at 2.2 A resolution []. Pab87 is a self-compartmentalizing proteases that orchestrates protein turnover through an original architecture characterised by a central catalytic chamber.
Probab=20.40 E-value=1.5e+02 Score=18.00 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=17.6
Q ss_pred ceeEEEECCCCCEEEEEeccC
Q psy13875 52 LRGLFIIDTKGVLRQITVNDL 72 (105)
Q Consensus 52 ~ratfiID~~G~V~~~~~~~~ 72 (105)
...+|.+|.+|+|....+...
T Consensus 66 ~~i~F~~d~~G~v~~l~l~~~ 86 (100)
T PF11954_consen 66 AQITFERDADGKVTGLTLHQN 86 (100)
T ss_pred CEEEEEECCCCCEEEEEEEec
Confidence 569999999999999887543
No 236
>PRK03760 hypothetical protein; Provisional
Probab=20.35 E-value=1.1e+02 Score=19.94 Aligned_cols=15 Identities=7% Similarity=0.277 Sum_probs=12.1
Q ss_pred EEEECCCCCEEEEEe
Q psy13875 55 LFIIDTKGVLRQITV 69 (105)
Q Consensus 55 tfiID~~G~V~~~~~ 69 (105)
...||++|+|+.+..
T Consensus 63 iiFld~~g~Vv~i~~ 77 (117)
T PRK03760 63 VIFLDSNRRVVDFKT 77 (117)
T ss_pred EEEECCCCeEEEEEe
Confidence 467899999999753
No 237
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=20.26 E-value=1.8e+02 Score=20.96 Aligned_cols=35 Identities=9% Similarity=0.097 Sum_probs=28.3
Q ss_pred eeEEEECCCCCEEEEEeccCC-CCCCHHHHHHHHHh
Q psy13875 53 RGLFIIDTKGVLRQITVNDLP-VGRSVEEVLRLVKA 87 (105)
Q Consensus 53 ratfiID~~G~V~~~~~~~~~-~~~~~~eil~~l~~ 87 (105)
...+.||++|.|..=++|... .+...+|+-+.|++
T Consensus 21 ~~~~~V~~dG~I~~P~iG~v~v~G~T~~e~~~~I~~ 56 (239)
T TIGR03028 21 TTDTRVSESGSITFPLIGEVKLGGETPAAAERKIAS 56 (239)
T ss_pred ceeEEECCCCeEEeeecceEEECCCCHHHHHHHHHH
Confidence 456899999999999999876 35788888777764
No 238
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=20.24 E-value=1.1e+02 Score=22.47 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=14.5
Q ss_pred ceeEEEECCCCCEEEEEe
Q psy13875 52 LRGLFIIDTKGVLRQITV 69 (105)
Q Consensus 52 ~ratfiID~~G~V~~~~~ 69 (105)
.=+.++|+++|+|+..+.
T Consensus 109 yNsa~~i~~~G~i~~~yr 126 (294)
T cd07582 109 FNTAFIIDPSGEIILRYR 126 (294)
T ss_pred EEEEEEECCCCcEEEEEe
Confidence 568899999999876654
No 239
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=20.06 E-value=1.5e+02 Score=17.73 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=13.5
Q ss_pred ceeEEEECCCCCEEEEE
Q psy13875 52 LRGLFIIDTKGVLRQIT 68 (105)
Q Consensus 52 ~ratfiID~~G~V~~~~ 68 (105)
.+..++.||+|..+.+.
T Consensus 93 ~~~~~~~DP~Gn~i~~~ 109 (112)
T cd07238 93 VRRFFVRDPFGKLVNIL 109 (112)
T ss_pred eEEEEEECCCCCEEEEE
Confidence 37789999999887654
No 240
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=20.03 E-value=1.2e+02 Score=23.46 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=15.3
Q ss_pred cceeEEEECCCCCEEEEEe
Q psy13875 51 PLRGLFIIDTKGVLRQITV 69 (105)
Q Consensus 51 ~~ratfiID~~G~V~~~~~ 69 (105)
..-+.++||++|+|+..+.
T Consensus 115 ~yNta~vi~~~G~i~~~Yr 133 (345)
T PRK13286 115 PYNTLILINDKGEIVQKYR 133 (345)
T ss_pred eeEEEEEECCCCeEEEEEE
Confidence 3568999999999877665
Done!