RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13875
(105 letters)
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis,
thioredoxin fold; 3.00A {Schistosoma mansoni} PDB:
3zvj_A 3zvj_D
Length = 222
Score = 148 bits (377), Expect = 6e-47
Identities = 53/86 (61%), Positives = 65/86 (75%), Gaps = 1/86 (1%)
Query: 11 WLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVN 70
W ++ + GGLG +K PLLAD K+EI+ +YGV E G RGLFIID G+LRQIT+N
Sbjct: 120 WD-NLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQITIN 178
Query: 71 DLPVGRSVEEVLRLVKAFQFVDKHGE 96
D PVGRSV+E LRL+ AFQFV+KHGE
Sbjct: 179 DKPVGRSVDETLRLLDAFQFVEKHGE 204
>1e2y_A TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin, oxidoreductase;
3.2A {Crithidia fasciculata} SCOP: c.47.1.10
Length = 188
Score = 147 bits (374), Expect = 7e-47
Identities = 47/78 (60%), Positives = 61/78 (78%)
Query: 19 DGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
GGLG + P+LAD K IA +YGVL E +G+ RG+FIID G LRQI +ND+P+GR+V
Sbjct: 94 KGGLGPMAIPMLADKTKAIARAYGVLDEDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNV 153
Query: 79 EEVLRLVKAFQFVDKHGE 96
EEV+RLV+A QFV++HGE
Sbjct: 154 EEVIRLVEALQFVEEHGE 171
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A
{Larimichthys crocea}
Length = 240
Score = 148 bits (377), Expect = 8e-47
Identities = 53/78 (67%), Positives = 62/78 (79%)
Query: 19 DGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
GGLG +K PLL+D +I+ YGV +E G LRGLFIID KGVLRQIT+NDLPVGRSV
Sbjct: 135 QGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSV 194
Query: 79 EEVLRLVKAFQFVDKHGE 96
+E LRLV+AFQ+ DKHGE
Sbjct: 195 DETLRLVQAFQYTDKHGE 212
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic
reticulum, oxidoreductase; HET: CSO; 1.91A {Homo
sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A
3tks_A 3tkr_A 3tks_C
Length = 254
Score = 149 bits (378), Expect = 9e-47
Identities = 51/78 (65%), Positives = 63/78 (80%)
Query: 19 DGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
GGLG ++ PLL+D +I+ YGV +E +G LRGLFIID KG+LRQIT+NDLPVGRSV
Sbjct: 149 QGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSV 208
Query: 79 EEVLRLVKAFQFVDKHGE 96
+E LRLV+AFQ+ DKHGE
Sbjct: 209 DETLRLVQAFQYTDKHGE 226
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A
{Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A
3hy2_A*
Length = 197
Score = 147 bits (373), Expect = 1e-46
Identities = 53/78 (67%), Positives = 61/78 (78%)
Query: 19 DGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
+GGLG L PLLAD + ++ YGVL GI RGLFIID KGVLRQITVNDLPVGRSV
Sbjct: 92 EGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSV 151
Query: 79 EEVLRLVKAFQFVDKHGE 96
+E LRLV+AFQ+ D+HGE
Sbjct: 152 DEALRLVQAFQYTDEHGE 169
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol,
oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Length = 216
Score = 147 bits (374), Expect = 1e-46
Identities = 49/78 (62%), Positives = 61/78 (78%)
Query: 19 DGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
+GGLG + PLLAD ++ YGVLIE G+ LRGLFIID KGV+R IT+NDLPVGR+V
Sbjct: 110 EGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVGRNV 169
Query: 79 EEVLRLVKAFQFVDKHGE 96
+E LRLV+AFQ+ DK+G
Sbjct: 170 DEALRLVEAFQWTDKNGT 187
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase;
2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Length = 202
Score = 147 bits (373), Expect = 1e-46
Identities = 54/78 (69%), Positives = 59/78 (75%)
Query: 19 DGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
GGLG + P+LAD K I SYGVL E G+ RGLFIID K LRQITVNDLPVGR V
Sbjct: 94 RGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDV 153
Query: 79 EEVLRLVKAFQFVDKHGE 96
+E LRLVKAFQFV+KHGE
Sbjct: 154 DEALRLVKAFQFVEKHGE 171
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics
consortium, SGC; 1.80A {Homo sapiens}
Length = 211
Score = 147 bits (374), Expect = 1e-46
Identities = 51/78 (65%), Positives = 63/78 (80%)
Query: 19 DGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
GGLG ++ PLL+D +I+ YGV +E +G LRGLFIID KG+LRQIT+NDLPVGRSV
Sbjct: 106 QGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSV 165
Query: 79 EEVLRLVKAFQFVDKHGE 96
+E LRLV+AFQ+ DKHGE
Sbjct: 166 DETLRLVQAFQYTDKHGE 183
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer,
peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP:
c.47.1.10
Length = 220
Score = 147 bits (374), Expect = 2e-46
Identities = 50/78 (64%), Positives = 62/78 (79%)
Query: 19 DGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
+GGLG + LL+D K+I+ YGVL+E G+ LRGLFIID GV++ ++VNDLPVGRSV
Sbjct: 114 NGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSV 173
Query: 79 EEVLRLVKAFQFVDKHGE 96
EE LRLVKAFQFV+ HGE
Sbjct: 174 EETLRLVKAFQFVEAHGE 191
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin
dependant, mitochondrial, antioxidant, oxidoreductase,
redox-active center; 1.78A {Plasmodium falciparum}
Length = 221
Score = 143 bits (362), Expect = 9e-45
Identities = 38/86 (44%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Query: 11 WLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVN 70
W ++ GG+G++++ L++D K+I+ +Y VL + LRGLFIID G +R TVN
Sbjct: 107 WK-NMPIEKGGIGNVEFTLVSDINKDISKNYNVLYD-NSFALRGLFIIDKNGCVRHQTVN 164
Query: 71 DLPVGRSVEEVLRLVKAFQFVDKHGE 96
DLP+GR+V+EVLR + + VD GE
Sbjct: 165 DLPIGRNVQEVLRTIDSIIHVDTSGE 190
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC,
oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB:
2h66_A
Length = 213
Score = 142 bits (359), Expect = 2e-44
Identities = 32/86 (37%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 11 WLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVN 70
W GG+G++K+ LL+D K I+ Y VL + + LR +ID G+++ + VN
Sbjct: 103 WK-KTPLAKGGIGNIKHTLLSDITKSISKDYNVLFDD-SVSLRAFVLIDMNGIVQHLLVN 160
Query: 71 DLPVGRSVEEVLRLVKAFQFVDKHGE 96
+L +GRSV+E+LR++ A Q +K+G+
Sbjct: 161 NLAIGRSVDEILRIIDAIQHHEKYGD 186
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics,
SGC, structural genomics consortium, oxidoreductase;
2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Length = 192
Score = 141 bits (357), Expect = 2e-44
Identities = 34/78 (43%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Query: 19 DGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
GG+G++K+ L++D K IA SY VL + LR +ID +GV++ + VN+L +GRSV
Sbjct: 89 QGGIGNIKHTLISDISKSIARSYDVLFN-ESVALRAFVLIDKQGVVQHLLVNNLALGRSV 147
Query: 79 EEVLRLVKAFQFVDKHGE 96
+E+LRL+ A Q +K+G+
Sbjct: 148 DEILRLIDALQHHEKYGD 165
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex,
oxidoreductase; 2.95A {Helicobacter pylori} SCOP:
c.47.1.10
Length = 198
Score = 140 bits (356), Expect = 4e-44
Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 11 WLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVN 70
W + GG+G + +P++AD K I+ Y VL E I LRG F+ID +R +N
Sbjct: 84 WK-NTPVEKGGIGQVSFPMVADITKSISRDYDVLFE-EAIALRGAFLIDKNMKVRHAVIN 141
Query: 71 DLPVGRSVEEVLRLVKAFQFVDKHGE 96
DLP+GR+ +E+LR+V A ++HGE
Sbjct: 142 DLPLGRNADEMLRMVDALLHFEEHGE 167
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC,
oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP:
c.47.1.10
Length = 187
Score = 138 bits (351), Expect = 2e-43
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 19 DGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
+G ++Y ++ D + I+ + VL E G+ RG FIID GV++ I +N +GR
Sbjct: 86 SPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDA 145
Query: 79 EEVLRLVKAFQFVDKH-GE 96
++ VKA Q+V ++ GE
Sbjct: 146 STLINKVKAAQYVRENPGE 164
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin,
decamer, antioxidant, peroxidase, AHPF, oxidoreductase;
2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB:
1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Length = 186
Score = 136 bits (346), Expect = 1e-42
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 19 DGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
+ +KY ++ D + ++ + E G+ R F++D +G+++ I V +GR
Sbjct: 85 SETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDA 144
Query: 79 EEVLRLVKAFQFVDKH-GE 96
++LR +KA Q+V H GE
Sbjct: 145 SDLLRKIKAAQYVAAHPGE 163
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system,
oxidoreductase, structural proteomics in EURO spine;
2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 195
Score = 123 bits (310), Expect = 4e-37
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 19 DGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
L L +P+L+D K+E++ + GVL G+ R FI+D ++ ++ VGR+V
Sbjct: 100 HNDLKTLPFPMLSDIKRELSQAAGVLNAD-GVADRVTFIVDPNNEIQFVSATAGSVGRNV 158
Query: 79 EEVLRLVKAFQFVDKHGE 96
+EVLR++ A Q E
Sbjct: 159 DEVLRVLDALQ----SDE 172
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A
{Arenicola marina} PDB: 2v32_A 2v41_A
Length = 233
Score = 123 bits (311), Expect = 6e-37
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 11 WLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESA------GIPLRGLFIIDTKGVL 64
W EDVK G GD+ YP++AD +E+A G++ + R +FII L
Sbjct: 80 WSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKL 139
Query: 65 RQITVNDLPVGRSVEEVLRLVKAFQFVDKHGE 96
+ + GR+ E+LR++ + Q +
Sbjct: 140 KLSILYPATTGRNFSEILRVIDSLQLTAQKKV 171
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics,
structural genomics consortium, SGC; 2.30A {Plasmodium
yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Length = 220
Score = 123 bits (310), Expect = 7e-37
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 11 WLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAG------IPLRGLFIIDTKGVL 64
W+ED+K G L + P++ D +E+A ++ E + R LF I + +
Sbjct: 82 WIEDIKY-YGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKI 140
Query: 65 RQITVNDLPVGRSVEEVLRLVKAFQFVDKHGE 96
+ + GR+ E+LR++K+ Q
Sbjct: 141 KATVLYPATTGRNAHEILRVLKSLQLTYTTPV 172
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular
signaling, antioxidant; 2.00A {Homo sapiens} SCOP:
c.47.1.10
Length = 224
Score = 121 bits (306), Expect = 3e-36
Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 11 WLEDVK--QGDGGLGDLKYPLLADFKKEIATSYGVLIESAG------IPLRGLFIIDTKG 62
W +D+ + L +P++ D +E+A G+L + + R +F+
Sbjct: 82 WSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDK 141
Query: 63 VLRQITVNDLPVGRSVEEVLRLVKAFQFVDKHGE 96
L+ + GR+ +E+LR+V + Q +
Sbjct: 142 KLKLSILYPATTGRNFDEILRVVISLQLTAEKRV 175
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide,
antioxidant, oxidoreductase, redox-active center; 1.65A
{Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A
2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Length = 249
Score = 119 bits (301), Expect = 3e-35
Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 11 WLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGI-PLRGLFIIDTKGVLRQITV 69
W E +++ G+ + +P++AD + +A G+L + +RG+FI+D +GV+R +
Sbjct: 84 WKEWIER-HIGV-RIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLY 141
Query: 70 NDLPVGRSVEEVLRLVKAFQFVDKHGE 96
+ +GR V+E+LR+VKA + D
Sbjct: 142 YPMELGRLVDEILRIVKALKLGDSLKR 168
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized
cystein sulfenic acid, structural genomics, PSI; 1.90A
{Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Length = 160
Score = 93.1 bits (232), Expect = 9e-26
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 23 GDLKYPLLADF--KKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEE 80
+PLL+DF ++ +YGV E AGI RG F++D G++R + R
Sbjct: 91 SGFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRL 150
Query: 81 VLRLVKAFQ 89
+ A
Sbjct: 151 WTDALAALT 159
>2ywn_A Peroxiredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 1.60A {Sulfolobus tokodaii} PDB:
3hjp_A
Length = 157
Score = 59.5 bits (145), Expect = 9e-13
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 24 DLKYPLLADFKKEIATSYGVLIESAGIP-----LRGLFIIDTKGVLRQITVNDLPVGRS- 77
L + +L+D+ +E+ Y V E +P R +F+ID +G +R V+D P
Sbjct: 86 KLNFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPP 145
Query: 78 VEEVLRLVKA 87
+E+ ++VK+
Sbjct: 146 YDEIEKVVKS 155
>2cx4_A Bacterioferritin comigratory protein; oxidoreductase, antioxidant
enzyme, reactive oxygen species, thioredoxin fold,
structural genomics; 2.30A {Aeropyrum pernix} SCOP:
c.47.1.10 PDB: 2cx3_A
Length = 164
Score = 59.2 bits (144), Expect = 1e-12
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 24 DLKYPLLADFKKEIATSYGVLIESAG----IPLRGLFIIDTKGVLRQITVNDLPVGRS-V 78
L + LL+D+ +E+ Y V E + R +FI+ G + V D P+
Sbjct: 89 RLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDY 148
Query: 79 EEVLRLVKAFQ 89
+EV+R
Sbjct: 149 DEVVREANKIA 159
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog;
bacterioferritin comigratory protein, oxidore; HET: CIT;
2.15A {Sulfolobus solfataricus}
Length = 161
Score = 49.1 bits (118), Expect = 8e-09
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 24 DLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR 83
L + L++D K+I YG R F+ID KG++R I + + V E L+
Sbjct: 85 KLPFILVSDPDKKIRELYGAK-GFILP-ARITFVIDKKGIIRHIYNSQMNPANHVNEALK 142
Query: 84 LVKAFQ 89
+K +
Sbjct: 143 ALKQIK 148
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI,
structure initiative, NEW YORK SGX research center for
STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP:
c.47.1.10
Length = 163
Score = 44.9 bits (107), Expect = 3e-07
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 23 GDLKYPLLADFK-KEIATSYGVLIESAGIPLRGLFIIDTKGVLR--QITVNDLPVGRSVE 79
G +L+D+ Y +LI + R +F++DT +R + V+++ + E
Sbjct: 96 GLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEY-VDNINSEPNFE 154
Query: 80 EVLRLVKA 87
+ KA
Sbjct: 155 AAIAAAKA 162
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET:
PG4; 1.96A {Staphylococcus aureus}
Length = 166
Score = 42.2 bits (100), Expect = 3e-06
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 23 GDLKYPLLADFK-KEIATSYGVLIESAGIPLRGLFIIDTKGVLR 65
G L+D + +YGV++E + R +F++D +
Sbjct: 99 GLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVV 142
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI,
protein structur initiative, TB structural genomics
consortium, TBSGC; 1.75A {Mycobacterium tuberculosis}
SCOP: c.47.1.10 PDB: 1y25_A
Length = 175
Score = 40.3 bits (95), Expect = 1e-05
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 6/74 (8%)
Query: 26 KYPLLADFKKEIATSYGVLIES---AGIPLRGLFIIDTKGVLR--QITVNDLPVGRSVEE 80
+ F+ YGV I AG+ R + +I G + ++ V ++ + E
Sbjct: 100 NVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTEL-VPEIAQEPNYEA 158
Query: 81 VLRLVKAFQFVDKH 94
L + A H
Sbjct: 159 ALAALGATSGSHHH 172
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant,
oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Length = 167
Score = 39.9 bits (94), Expect = 2e-05
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 26 KYPLLADFK-KEIATSYGVLIESAGIPLRGLFIIDTKGVLR 65
K L+D + ++GV I+ + R +F++D G +
Sbjct: 101 KVETLSDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKVV 141
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys,
oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV}
PDB: 3gkk_A 3gkm_A
Length = 163
Score = 39.9 bits (94), Expect = 2e-05
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 24 DLKYPLLADFKKEIATSYGVLIE-------SAGIPLRGLFIIDTKGVLRQITVNDLPVGR 76
+PL++D + + ++ V+ E GI R F++ +G + Q + V
Sbjct: 91 GFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGI-ERSTFLLSPEGQVVQAWRK-VKVAG 148
Query: 77 SVEEVLRLVKAFQ 89
+ VL +KA
Sbjct: 149 HADAVLAALKAHA 161
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein,
oxidoreductase; 1.60A {Xylella fastidiosa}
Length = 179
Score = 40.0 bits (94), Expect = 2e-05
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 24 DLKYPLLADFKKEIATSYGVLIE-------SAGIPLRGLFIIDTKGVLRQITVNDLPVGR 76
+PL++D + ++ V+ E GI R F+I + + + V
Sbjct: 107 GFTFPLVSDSDAILCKAFDVIKEKTMYGRQVIGI-ERSTFLIGPTHRIVEAWRQ-VKVPG 164
Query: 77 SVEEVLRLVKAFQ 89
EEVL +KA
Sbjct: 165 HAEEVLNKLKAHA 177
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant,
oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex
aeolicus}
Length = 171
Score = 39.6 bits (93), Expect = 3e-05
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 23 GDLKYPLLADFKKEIATSYGVLIES---AGIPLRGLFIIDTKGVLR--QITVNDLPVGRS 77
+ +DF+ YGVLI GI R +FIID +G + Q+ V ++ +
Sbjct: 101 NIQNVTVASDFRYRDMEKYGVLIGEGALKGILARAVFIIDKEGKVAYVQL-VPEITEEPN 159
Query: 78 VEEVLRLVKA 87
+EV+ VK
Sbjct: 160 YDEVVNKVKE 169
>4evm_A Thioredoxin family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.51A
{Streptococcus pneumoniae}
Length = 138
Score = 38.0 bits (89), Expect = 8e-05
Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 6/70 (8%)
Query: 3 FVDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKG 62
E D K GL P+L D ++ +YGV P ID +G
Sbjct: 62 SPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETYGVR----SYPT--QAFIDKEG 115
Query: 63 VLRQITVNDL 72
L + +
Sbjct: 116 KLVKTHPGFM 125
>2lrn_A Thiol:disulfide interchange protein; structural genomics,
thioredoxin-like, NEW YORK structural G research
consortium, oxidoreductase; NMR {Bacteroides SP}
Length = 152
Score = 37.3 bits (87), Expect = 2e-04
Identities = 15/83 (18%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 4 VDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGV 63
D +E W + ++ + + L D K++ SY ++ G P + ++D +G
Sbjct: 70 TDRREEDWKKAIE--EDKSYWNQVLLQKDDVKDVLESYCIV----GFP--HIILVDPEGK 121
Query: 64 LRQITVNDLPVGRSVEEVLRLVK 86
+ + + +VE+ + K
Sbjct: 122 IVAKELRGDDLYNTVEKFVNGAK 144
>2ls5_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, NEW structural genomics research
consortium; NMR {Bacteroides thetaiotaomicron}
Length = 159
Score = 36.9 bits (86), Expect = 2e-04
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 9/66 (13%)
Query: 4 VDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGV 63
DE E L K + YPL D +I Y + AGI +ID +G
Sbjct: 76 RDEPLEKVLAFAKSTG-----VTYPLGLDPGADIFAKYAL--RDAGITR--NVLIDREGK 126
Query: 64 LRQITV 69
+ ++T
Sbjct: 127 IVKLTR 132
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET:
MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB:
1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A
3c73_A
Length = 151
Score = 35.7 bits (83), Expect = 7e-04
Identities = 13/84 (15%), Positives = 35/84 (41%), Gaps = 12/84 (14%)
Query: 4 VDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGV 63
V E +K + +P++ D +++ +Y V + +P F+I+ +G
Sbjct: 67 VGESKIAVHNFMKSYG-----VNFPVVLDTDRQVLDAYDV----SPLPT--TFLINPEGK 115
Query: 64 LRQITVNDLPVGRSVEEVLRLVKA 87
+ ++ + + + + L+K
Sbjct: 116 VVKVVTGTMT-ESMIHDYMNLIKP 138
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin,
thioredoxin-fold, ROS PR; 1.74A {Yersinia
pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A
4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Length = 200
Score = 35.4 bits (82), Expect = 0.001
Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 23 GDLKYPLLADFK-KEIATSYGVLIES---AGIPLRGLFIIDTKGVLR--QITVNDLPVGR 76
G L+ + + +YGV I AG+ R + ++D + + ++ VN++
Sbjct: 132 GLSNVITLSTLRGADFKQAYGVAITEGPLAGLTARAVVVLDGQDNVIYSEL-VNEITTEP 190
Query: 77 SVEEVLRLVK 86
+ + L +K
Sbjct: 191 NYDAALAALK 200
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase,
PSI-II, structural genomics, protein structure
initiative; 2.09A {Chlorobium tepidum tls}
Length = 152
Score = 34.9 bits (81), Expect = 0.001
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 11/70 (15%)
Query: 4 VDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGV 63
+D ++ + Q ++ + D K + YGV G+P F+ID G
Sbjct: 69 LDAKTGDAMKFLAQVP-----AEFTVAFDPKGQTPRLYGV----KGMPT--SFLIDRNGK 117
Query: 64 LRQITVNDLP 73
+ V P
Sbjct: 118 VLLQHVGFRP 127
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys
peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces
cerevisiae} SCOP: c.47.1.10
Length = 159
Score = 34.9 bits (81), Expect = 0.001
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 24 DLKYPLLADFKKEIATSYGVLIESAGIPLRGLFII-DTKGVLRQITVND-LPVGRSVEEV 81
+L Y LL+D K+E G +R FI D K +++ ++ + V + +EV
Sbjct: 90 NLPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIFVDGKLKFKRVKISPEVSVNDAKKEV 149
Query: 82 LRLVKAFQ 89
L + + F+
Sbjct: 150 LEVAEKFK 157
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein
structure initiative; 1.90A {Haemophilus influenzae}
SCOP: c.47.1.10
Length = 165
Score = 34.6 bits (80), Expect = 0.002
Identities = 9/47 (19%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 23 GDLKYPLLADFK-KEIATSYGVLIES---AGIPLRGLFIIDTKGVLR 65
G ++ F+ + + GV I++ AG+ R + ++D + +
Sbjct: 97 GIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVL 143
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics,
unknown function, thioredoxin-like; NMR {Bacteroides
vulgatus}
Length = 152
Score = 33.8 bits (78), Expect = 0.004
Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 10/66 (15%)
Query: 4 VDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGV 63
D+ + W V + L + +Y + GIP ++D G
Sbjct: 71 CDKNKKAWENMVTK----DQLKGIQLHMGTDRTFMDAYLI----NGIPR--FILLDRDGK 120
Query: 64 LRQITV 69
+ +
Sbjct: 121 IISANM 126
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G
midwest center for structural genomics, protein
structure initiative; 1.70A {Aeropyrum pernix}
Length = 165
Score = 33.3 bits (76), Expect = 0.005
Identities = 8/64 (12%), Positives = 19/64 (29%), Gaps = 8/64 (12%)
Query: 24 DLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR 83
++ + + V I + I+D + P +E V++
Sbjct: 109 GDPSWIMVMDDGSLVEKFNV----RSIDY--IVIMDKSSNVLYAGTT--PSLGELESVIK 160
Query: 84 LVKA 87
V+
Sbjct: 161 SVQG 164
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP:
c.47.1.10 PDB: 3ios_A
Length = 136
Score = 32.6 bits (75), Expect = 0.009
Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 10/65 (15%)
Query: 4 VDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGV 63
+ E V + + LAD + ++GV P +D G
Sbjct: 64 GLDQVPAMQEFVNK----YPVKTFTQLADTDGSVWANFGV----TQQPA--YAFVDPHGN 113
Query: 64 LRQIT 68
+ +
Sbjct: 114 VDVVR 118
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2,
protein struct initiative; NMR {Neisseria meningitidis
serogroup B}
Length = 153
Score = 32.7 bits (75), Expect = 0.010
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 24 DLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR 83
L + ++ D K + ++G P +I KG + + V + G+ +E+
Sbjct: 85 GLPFTVMYDADKAVGQAFGT----QVYPT--SVLIGKKGEILKTYVGEPDFGKLYQEIDT 138
Query: 84 LVK 86
+
Sbjct: 139 AWR 141
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2,
Pro structure initiative; HET: MSE; 1.80A
{Chromobacterium violaceum}
Length = 224
Score = 32.1 bits (73), Expect = 0.018
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 26 KYPLLADFK-KEIATSYGVLIES---AGIPLRGLFIIDTKGVLR 65
LL+ + ++ YGVLI +G + + D V+
Sbjct: 107 NIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAANVVH 150
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus
subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Length = 148
Score = 31.5 bits (72), Expect = 0.022
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 6/63 (9%)
Query: 24 DLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR 83
D+ P+ D + ++ +P ++ D G LR + + V R
Sbjct: 89 DITQPIFVDSDHALTDAFEN----EYVP--AYYVFDKTGQLRHFQAGGSGMKMLEKRVNR 142
Query: 84 LVK 86
++
Sbjct: 143 VLA 145
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural
genomics, joint center F structural genomics, JCSG;
2.02A {Parabacteroides distasonis}
Length = 143
Score = 31.2 bits (71), Expect = 0.032
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 4 VDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGV 63
+DE + ++ E VK D ++ + E+ Y + F+I+ +GV
Sbjct: 73 MDEKESIFTETVKI-DKLDLSTQFHEGLGKESELYKKYDL----RKGF--KNFLINDEGV 125
Query: 64 LRQITVND 71
+ V
Sbjct: 126 IIAANVTP 133
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural
genomics, PSI, protein structure initiative; 1.12A
{Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 136
Score = 30.7 bits (70), Expect = 0.037
Identities = 10/60 (16%), Positives = 16/60 (26%), Gaps = 9/60 (15%)
Query: 24 DLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR 83
+L + L D I Y V P G + + P ++ L
Sbjct: 78 NLNFTNLNDADGVIWARYNV----PWQPA--FVFYRADGTSTFV---NNPTAAMSQDELS 128
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB;
reduced, thiol-disulfide exchange, oxidoreductase; 1.60A
{Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Length = 164
Score = 30.1 bits (68), Expect = 0.081
Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Query: 13 EDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69
+ ++ GL K P++ D IA + + + P +I G +++I
Sbjct: 89 GEFQKWYAGLNYPKLPVVTDNGGTIAQNLNI----SVYPSW--ALIGKDGDVQRIVK 139
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural
genomics, PSI-2, protein structure initiative; 1.77A
{Geobacter metallireducens gs-15}
Length = 158
Score = 30.0 bits (68), Expect = 0.086
Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 25 LKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL 84
+ + L+D ++ YG +P FI+D KG++RQ + +V+
Sbjct: 95 VSFNFLSDATGQVQQRYGAN----RLPD--TFIVDRKGIIRQRVTGGIE--WDAPKVVSY 146
Query: 85 VKAFQ 89
+K+ +
Sbjct: 147 LKSLE 151
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI,
structural genomics, protein initiative; 2.45A
{Geobacter metallireducens gs-15}
Length = 154
Score = 30.0 bits (68), Expect = 0.089
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 10/76 (13%)
Query: 25 LKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL 84
P+L D K + YG G+P F+ID GV+ + V + EV+
Sbjct: 86 FTLPVLLDADKRVGKLYGTT----GVPE--TFVIDRHGVILKKVVG--AMEWDHPEVIAF 137
Query: 85 VKAFQFVDKHGEGSKR 100
+ + K EG
Sbjct: 138 LN--NELSKAREGHHH 151
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB
struct genomics consortium, TBSGC, unknown function;
1.90A {Mycobacterium tuberculosis}
Length = 352
Score = 30.0 bits (67), Expect = 0.100
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 6/46 (13%)
Query: 24 DLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69
+ YP+ D T+Y P ++ID G +R I
Sbjct: 143 GISYPIALDNNYATWTNYRNR----YWP--AEYLIDATGTVRHIKF 182
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like
fold, RESA-like fold, dithiol, STOA, redox-active
center; 2.50A {Bacillus subtilis}
Length = 145
Score = 29.6 bits (67), Expect = 0.10
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 25 LKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69
L +P++ D K E+ Y + IP F+++ KG + + +
Sbjct: 94 LTFPIVLDSKGELMKEYHI----ITIPT--SFLLNEKGEIEKTKI 132
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG,
structural genomics, midwest center for structural
genomics; 1.75A {Corynebacterium glutamicum}
Length = 183
Score = 28.2 bits (63), Expect = 0.38
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 9/65 (13%)
Query: 25 LKYPLLADFKKEIATSYGVLIESAGIPLRGL---FIIDTKGVLRQITVNDLPVGRSVEEV 81
L YP + D A S G G+P + ++D + + + ++ ++
Sbjct: 123 LDYPSIYDPPFMTAASLG------GVPASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVA 176
Query: 82 LRLVK 86
L LV
Sbjct: 177 LPLVD 181
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 1.1
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 22/87 (25%)
Query: 2 KFVDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIA---TSYGVLIESAGIPLRGL--- 55
F E + +E V + G L EI + +AG LR L
Sbjct: 1820 SFSQEALQYVVERVGKRTGWL------------VEIVNYNVENQQYV-AAG-DLRALDTV 1865
Query: 56 -FIIDTKGVLRQITVNDLPVGRSVEEV 81
+++ + ++I + +L S+EEV
Sbjct: 1866 TNVLNFIKL-QKIDIIELQKSLSLEEV 1891
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2,
NYSGXRC, structu genomics, protein structure initiative;
1.76A {Thermus thermophilus}
Length = 154
Score = 26.9 bits (60), Expect = 1.1
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 14/89 (15%)
Query: 4 VDEGDEVWLEDVKQGDGGLGDLKYPLLA---DFKKEIATSYGVLIESAGIPLRGLFIIDT 60
+ EV LE +K PLLA D E+A + V G P F++D
Sbjct: 70 PRDTREVVLEYMKT----YP-RFIPLLASDRDRPHEVAARFKV----LGQPW--TFVVDR 118
Query: 61 KGVLRQITVNDLPVGRSVEEVLRLVKAFQ 89
+G + + ++ +L +
Sbjct: 119 EGKVVALFAGRAGREALLDALLLAGADLE 147
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II,
NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides
thetaiotaomicron vpi-5482}
Length = 612
Score = 27.0 bits (59), Expect = 1.5
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 43 VLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGR 76
+L+E+ G G I D KG+ ++ +
Sbjct: 443 ILVEAMGRMNFGKGIYDWKGITEKVELQSDKGVE 476
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 1.5
Identities = 14/78 (17%), Positives = 21/78 (26%), Gaps = 14/78 (17%)
Query: 29 LLADF----KKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL 84
+ DF +K S + + + K I ND R V +L
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNT----LQQLKFYKPYICDNDPKYERLVNAILD- 550
Query: 85 VKAFQFVDKHGEGSKRVP 102
F+ K E
Sbjct: 551 -----FLPKIEENLICSK 563
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous
protein, calcium-binding protein, NHE1 regulating
protein; 2.70A {Homo sapiens}
Length = 202
Score = 25.9 bits (57), Expect = 2.8
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 77 SVEEVLRLVKAFQFVDKHGEGS 98
S +LRL F+ +D++ +G
Sbjct: 24 SQASLLRLHHRFRALDRNKKGY 45
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein;
2.20A {Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 25.5 bits (56), Expect = 3.7
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 77 SVEEVLRLVKAFQFVDKHGEGS 98
S ++ RL F +DK G+
Sbjct: 24 SHSQITRLYSRFTSLDKGENGT 45
>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A
{Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A
2hzy_A* 1qco_A 1qqj_A
Length = 421
Score = 25.1 bits (54), Expect = 5.8
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 2 KFVDEGDEVWLEDVKQGDG---GLGDL 25
F+ +GDEV + QGDG G G
Sbjct: 384 TFLLDGDEVIITGHCQGDGYRVGFGQC 410
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.143 0.415
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,677,700
Number of extensions: 95496
Number of successful extensions: 409
Number of sequences better than 10.0: 1
Number of HSP's gapped: 391
Number of HSP's successfully gapped: 68
Length of query: 105
Length of database: 6,701,793
Length adjustment: 70
Effective length of query: 35
Effective length of database: 4,747,323
Effective search space: 166156305
Effective search space used: 166156305
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.5 bits)