RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13875
(105 letters)
>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin
peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}
Length = 194
Score = 93.7 bits (232), Expect = 4e-26
Identities = 54/78 (69%), Positives = 59/78 (75%)
Query: 19 DGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
GGLG + P+LAD K I SYGVL E G+ RGLFIID K LRQITVNDLPVGR V
Sbjct: 91 RGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDV 150
Query: 79 EEVLRLVKAFQFVDKHGE 96
+E LRLVKAFQFV+KHGE
Sbjct: 151 DEALRLVKAFQFVEKHGE 168
>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 158
Score = 91.8 bits (227), Expect = 1e-25
Identities = 48/84 (57%), Positives = 63/84 (75%), Gaps = 1/84 (1%)
Query: 9 EVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQIT 68
W+ ++ +GGLG + LL+D K+I+ YGVL+E G+ LRGLFIID GV++ ++
Sbjct: 75 LAWINTPRK-NGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLS 133
Query: 69 VNDLPVGRSVEEVLRLVKAFQFVD 92
VNDLPVGRSVEE LRLVKAFQFV+
Sbjct: 134 VNDLPVGRSVEETLRLVKAFQFVE 157
>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin
peroxidase homologue) {Crithidia fasciculata [TaxId:
5656]}
Length = 167
Score = 91.5 bits (226), Expect = 1e-25
Identities = 42/70 (60%), Positives = 55/70 (78%)
Query: 26 KYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLV 85
P+LAD K IA +YGVL E +G+ RG+FIID G LRQI +ND+P+GR+VEEV+RLV
Sbjct: 98 AIPMLADKTKAIARAYGVLDEDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLV 157
Query: 86 KAFQFVDKHG 95
+A QFV++HG
Sbjct: 158 EALQFVEEHG 167
>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin
peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 197
Score = 91.8 bits (227), Expect = 2e-25
Identities = 53/79 (67%), Positives = 61/79 (77%)
Query: 19 DGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
+GGLG L PLLAD + ++ YGVL GI RGLFIID KGVLRQITVNDLPVGRSV
Sbjct: 92 EGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSV 151
Query: 79 EEVLRLVKAFQFVDKHGEG 97
+E LRLV+AFQ+ D+HGE
Sbjct: 152 DEALRLVQAFQYTDEHGEV 170
>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA
{Helicobacter pylori [TaxId: 210]}
Length = 170
Score = 88.8 bits (219), Expect = 2e-24
Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 14 DVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLP 73
+ GG+G + +P++AD K I+ Y VL E I LRG F+ID +R +NDLP
Sbjct: 86 NTPVEKGGIGQVSFPMVADITKSISRDYDVLFE-EAIALRGAFLIDKNMKVRHAVINDLP 144
Query: 74 VGRSVEEVLRLVKAFQFVDKHGE 96
+GR+ +E+LR+V A ++HGE
Sbjct: 145 LGRNADEMLRMVDALLHFEEHGE 167
>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC
{Amphibacillus xylanus [TaxId: 1449]}
Length = 166
Score = 85.3 bits (210), Expect = 5e-23
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 26 KYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLV 85
+Y ++ D + I+ + VL E G+ RG FIID GV++ I +N +GR ++ V
Sbjct: 93 EYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKV 152
Query: 86 KAFQFVDKH-GE 96
KA Q+V ++ GE
Sbjct: 153 KAAQYVRENPGE 164
>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin
peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii
[TaxId: 5861]}
Length = 170
Score = 76.8 bits (188), Expect = 1e-19
Identities = 34/78 (43%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Query: 19 DGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
GG+G++K+ L++D K IA SY VL + LR +ID +GV++ + VN+L +GRSV
Sbjct: 85 QGGIGNIKHTLISDISKSIARSYDVLFNE-SVALRAFVLIDKQGVVQHLLVNNLALGRSV 143
Query: 79 EEVLRLVKAFQFVDKHGE 96
+E+LRL+ A Q +K+G+
Sbjct: 144 DEILRLIDALQHHEKYGD 161
>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId:
56636]}
Length = 237
Score = 71.8 bits (175), Expect = 2e-17
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 16 KQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGI-PLRGLFIIDTKGVLRQITVNDLPV 74
+ +P++AD + +A G+L + +RG+FI+D +GV+R + + +
Sbjct: 83 WIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMEL 142
Query: 75 GRSVEEVLRLVKAFQFVDKHGE 96
GR V+E+LR+VKA + D
Sbjct: 143 GRLVDEILRIVKALKLGDSLKR 164
>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 169
Score = 69.3 bits (168), Expect = 6e-17
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 23 GDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVL 82
L +P+L+D K+E++ + GVL G+ R FI+D ++ ++ VGR+V+EVL
Sbjct: 103 KTLPFPMLSDIKRELSQAAGVLNAD-GVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVL 161
Query: 83 RLVKAFQ 89
R++ A Q
Sbjct: 162 RVLDALQ 168
>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii
yoelii [TaxId: 73239]}
Length = 219
Score = 67.9 bits (165), Expect = 5e-16
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 20 GGLGDLKYPLLADFKKEIATSYGVLIESA------GIPLRGLFIIDTKGVLRQITVNDLP 73
G L + P++ D +E+A ++ E + R LF I + ++ +
Sbjct: 89 GKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPAT 148
Query: 74 VGRSVEEVLRLVKAFQFVDKHGE 96
GR+ E+LR++K+ Q
Sbjct: 149 TGRNAHEILRVLKSLQLTYTTPV 171
>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 220
Score = 67.5 bits (164), Expect = 8e-16
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 20 GGLGDLKYPLLADFKKEIATSYGVLIESAG------IPLRGLFIIDTKGVLRQITVNDLP 73
L +P++ D +E+A G+L + + R +F+ L+ +
Sbjct: 89 EPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPAT 148
Query: 74 VGRSVEEVLRLVKAFQFVDKHGE 96
GR+ +E+LR+V + Q +
Sbjct: 149 TGRNFDEILRVVISLQLTAEKRV 171
>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC
{Salmonella typhimurium [TaxId: 90371]}
Length = 186
Score = 66.0 bits (160), Expect = 2e-15
Identities = 20/76 (26%), Positives = 40/76 (52%)
Query: 19 DGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
+ +KY ++ D + ++ + E G+ R F++D +G+++ I V +GR
Sbjct: 85 SETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDA 144
Query: 79 EEVLRLVKAFQFVDKH 94
++LR +KA Q+V H
Sbjct: 145 SDLLRKIKAAQYVAAH 160
>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein
{Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 160
Score = 53.1 bits (126), Expect = 1e-10
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 23 GDLKYPLLADFKKEIATSYGVLIESA----GIPLRGLFIIDTKGVLRQITVNDLPVGR-S 77
L + LL+D+ +E+ Y V E + R +FI+ G + V D P+
Sbjct: 85 NRLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPD 144
Query: 78 VEEVLRLVKAFQ 89
+EV+R
Sbjct: 145 YDEVVREANKIA 156
>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 153
Score = 50.9 bits (120), Expect = 6e-10
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 25 LKYPLLADFKK--EIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVL 82
+PLL+DF ++ +YGV E AGI RG F++D G++R + R
Sbjct: 86 FTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWT 145
Query: 83 RLVKA 87
+ A
Sbjct: 146 DALAA 150
>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 156
Score = 48.8 bits (115), Expect = 4e-09
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 31 ADFKKEIATSYGVLIESAGIPLRGLFII-DTKGVLRQITVN-DLPVGRSVEEVLRLVKAF 88
+D K+E G +R FI D K +++ ++ ++ V + +EVL + + F
Sbjct: 95 SDPKREFIGLLGAKKTPLSGSIRSHFIFVDGKLKFKRVKISPEVSVNDAKKEVLEVAEKF 154
Query: 89 Q 89
+
Sbjct: 155 K 155
>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 163
Score = 46.8 bits (110), Expect = 3e-08
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 32 DFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQI-TVNDLPVGRSVEEVLRLVKA 87
F Y +LI + R +F++DT +R + V+++ + E + KA
Sbjct: 106 YFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA 162
>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 166
Score = 39.5 bits (91), Expect = 1e-05
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 4/72 (5%)
Query: 20 GGLGDLKYPLLADFKKEIATSYGVLIES---AGIPLRGLFIIDTKGVLRQI-TVNDLPVG 75
G G + F+ YGV I AG+ R + +I G + V ++
Sbjct: 93 GAEGTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTELVPEIAQE 152
Query: 76 RSVEEVLRLVKA 87
+ E L + A
Sbjct: 153 PNYEAALAALGA 164
>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 161
Score = 38.4 bits (88), Expect = 3e-05
Identities = 8/67 (11%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Query: 27 YPLLADFKKEIATSYGVLIESAGIPL------RGLFIIDTKGVLRQITVNDLPVGRSVEE 80
LLAD +L++ + + + + ++ G+++ + V G +
Sbjct: 94 VRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSL 153
Query: 81 VLRLVKA 87
++
Sbjct: 154 APNIISQ 160
>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ),
soluble domain {Baker's yeast(Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 169
Score = 28.2 bits (61), Expect = 0.15
Identities = 5/36 (13%), Positives = 16/36 (44%)
Query: 53 RGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF 88
+++D +G + V++++ VK++
Sbjct: 131 IFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSY 166
>d1y1xa_ a.39.1.8 (A:) Programmed cell death 6 protein-like
protein {Leishmania major [TaxId: 5664]}
Length = 182
Score = 28.1 bits (61), Expect = 0.15
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 73 PVGRSVEEVLRLVKAFQFVDKHGEGS 98
P R + + L++ F+ VD G G+
Sbjct: 9 PSARHMNDNQELMEWFRAVDTDGSGA 34
>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 165
Score = 25.8 bits (55), Expect = 1.00
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 77 SVEEVLRLVKAFQFVDKHGEGS 98
+E+ RL K F+ +D GS
Sbjct: 11 DADEIKRLGKRFKKLDLDNSGS 32
>d1s6ia_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD
{Soybean (Glycine max) [TaxId: 3847]}
Length = 182
Score = 24.2 bits (51), Expect = 3.4
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 77 SVEEVLRLVKAFQFVDKHGEGS 98
S EE+ L + F+ +D G+
Sbjct: 5 SEEEIGGLKELFKMIDTDNSGT 26
>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 146
Score = 23.3 bits (49), Expect = 7.2
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 77 SVEEVLRLVKAFQFVDKHGEGS 98
+ E++ +AF DK GS
Sbjct: 5 TEEQIAEFKEAFALFDKDNNGS 26
>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD
{Soybean (Glycine max) [TaxId: 3847]}
Length = 87
Score = 22.6 bits (48), Expect = 7.8
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 77 SVEEVLRLVKAFQFVDKHGEGS 98
S EE+ L + F+ +D G+
Sbjct: 18 SEEEIGGLKELFKMIDTDNSGT 39
>d2zfda1 a.39.1.5 (A:32-214) Calcineurin B-like protein 2 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 183
Score = 23.4 bits (49), Expect = 7.9
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 77 SVEEVLRLVKAFQFVDKHGEGSKRV 101
SV E+ L + F+ + +
Sbjct: 12 SVSEIEALYELFKKISSAVIDDGLI 36
>d1hq1a_ a.36.1.1 (A:) Signal sequence binding protein Ffh
{Escherichia coli [TaxId: 562]}
Length = 104
Score = 23.0 bits (49), Expect = 8.2
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 75 GRSVEEVLRLVKAFQ 89
G V++V RL+K F
Sbjct: 80 GMQVQDVNRLLKQFD 94
>d1dula_ a.36.1.1 (A:) Signal sequence binding protein Ffh
{Escherichia coli [TaxId: 562]}
Length = 69
Score = 22.0 bits (47), Expect = 9.7
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 75 GRSVEEVLRLVKAFQ 89
G V++V RL+K F
Sbjct: 46 GMQVQDVNRLLKQFD 60
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.143 0.415
Gapped
Lambda K H
0.267 0.0448 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 397,236
Number of extensions: 17025
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 34
Length of query: 105
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 40
Effective length of database: 1,515,146
Effective search space: 60605840
Effective search space used: 60605840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.6 bits)