BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13876
         (118 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3F9V|A Chain A, Crystal Structure Of A Near Full-Length Archaeal Mcm:
           Functional Insights For An Aaa+ Hexameric Helicase
          Length = 595

 Score = 32.0 bits (71), Expect = 0.094,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 48  DTYIEAQRIQCLSKALEDDKPAGTLSEEEMAELGGDQFY-SKLAASLAPEIYGHEDVKKA 106
           D Y++   I+   K L D+       E+++ +L  D +   ++ +S+AP IYGH ++K+A
Sbjct: 248 DIYMKVSSIEVSQKVL-DEVIISEEDEKKIKDLAKDPWIRDRIISSIAPSIYGHWELKEA 306


>pdb|1Q7C|A Chain A, The Structure Of Betaketoacyl-[acp] Reductase Y151f Mutant
           In Complex With Nadph Fragment
 pdb|1Q7C|B Chain B, The Structure Of Betaketoacyl-[acp] Reductase Y151f Mutant
           In Complex With Nadph Fragment
          Length = 244

 Score = 28.5 bits (62), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 59  LSKALEDDKPAGTLSEEEMAELGGDQFYSKLAASLAPE 96
           +++AL DD+ AG L++     LGG Q  +   A LA +
Sbjct: 188 MTRALSDDQRAGILAQVPAGRLGGAQEIANAVAFLASD 225


>pdb|1I01|A Chain A, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
           Reductase From E. Coli.
 pdb|1I01|B Chain B, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
           Reductase From E. Coli.
 pdb|1I01|C Chain C, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
           Reductase From E. Coli.
 pdb|1I01|D Chain D, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
           Reductase From E. Coli.
 pdb|1I01|E Chain E, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
           Reductase From E. Coli.
 pdb|1I01|F Chain F, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
           Reductase From E. Coli.
 pdb|1I01|G Chain G, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
           Reductase From E. Coli.
 pdb|1I01|H Chain H, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
           Reductase From E. Coli.
 pdb|1Q7B|A Chain A, The Structure Of Betaketoacyl-[acp] Reductase From E. Coli
           In Complex With Nadp+
 pdb|1Q7B|B Chain B, The Structure Of Betaketoacyl-[acp] Reductase From E. Coli
           In Complex With Nadp+
 pdb|1Q7B|C Chain C, The Structure Of Betaketoacyl-[acp] Reductase From E. Coli
           In Complex With Nadp+
 pdb|1Q7B|D Chain D, The Structure Of Betaketoacyl-[acp] Reductase From E. Coli
           In Complex With Nadp+
          Length = 244

 Score = 28.5 bits (62), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 59  LSKALEDDKPAGTLSEEEMAELGGDQFYSKLAASLAPE 96
           +++AL DD+ AG L++     LGG Q  +   A LA +
Sbjct: 188 MTRALSDDQRAGILAQVPAGRLGGAQEIANAVAFLASD 225


>pdb|4G6Q|A Chain A, The Crystal Structure Of A Functionally Unknown Protein
           Kfla_6221 From Kribbella Flavida Dsm 17836
 pdb|4G6Q|B Chain B, The Crystal Structure Of A Functionally Unknown Protein
           Kfla_6221 From Kribbella Flavida Dsm 17836
          Length = 182

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 6/61 (9%)

Query: 37  LFVCSSPGLLSDTYIEAQRIQCLSKALEDDKPAGTLSEEEMAELGGDQFYSKLAASLAPE 96
           +FV    G L D Y+E ++I  L+  +   + A  LS+EE+AE     F +     LAP 
Sbjct: 108 VFVAGVGGHL-DQYLEREQIDPLADGIAFRQTALNLSDEELAE-----FLTAFGEFLAPY 161

Query: 97  I 97
           +
Sbjct: 162 V 162


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,334,964
Number of Sequences: 62578
Number of extensions: 116860
Number of successful extensions: 212
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 209
Number of HSP's gapped (non-prelim): 5
length of query: 118
length of database: 14,973,337
effective HSP length: 81
effective length of query: 37
effective length of database: 9,904,519
effective search space: 366467203
effective search space used: 366467203
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)