Query psy13876
Match_columns 118
No_of_seqs 121 out of 1116
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 22:40:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13876.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13876hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f8t_A Predicted ATPase involv 99.9 2.8E-24 9.5E-29 173.9 10.7 97 6-117 129-235 (506)
2 3f9v_A Minichromosome maintena 99.9 2.2E-23 7.6E-28 171.9 6.8 107 6-116 199-316 (595)
3 1ltl_A DNA replication initiat 99.8 1.6E-20 5.5E-25 142.6 6.0 83 5-91 191-279 (279)
4 2vl6_A SSO MCM N-TER, minichro 99.6 4.2E-16 1.4E-20 117.4 8.2 57 5-61 204-267 (268)
5 1nnx_A Protein YGIW; structura 91.9 0.44 1.5E-05 31.0 5.7 44 13-60 63-108 (109)
6 3nbx_X ATPase RAVA; AAA+ ATPas 82.4 1.1 3.7E-05 36.1 3.6 33 83-115 10-42 (500)
7 2wkd_A ORF34P2; SSB, single-st 81.6 1.3 4.3E-05 28.8 3.0 24 21-44 49-72 (119)
8 3vdy_A SSB, single-stranded DN 79.4 4.9 0.00017 25.6 5.5 53 10-62 48-109 (116)
9 3fhw_A Primosomal replication 79.0 9.3 0.00032 24.7 6.7 48 14-62 49-99 (115)
10 3k8a_A Putative primosomal rep 76.8 7.9 0.00027 24.5 5.8 45 14-59 55-101 (103)
11 3e0e_A Replication protein A; 74.5 6.1 0.00021 24.4 4.7 30 13-42 50-80 (97)
12 3ull_A DNA binding protein; DN 74.2 8.1 0.00028 25.2 5.5 52 11-62 66-127 (132)
13 3tqy_A Single-stranded DNA-bin 72.9 9.9 0.00034 25.8 5.8 53 11-63 55-116 (158)
14 3kdf_D Replication protein A 3 71.4 8.4 0.00029 25.0 5.0 35 23-61 77-111 (132)
15 2r44_A Uncharacterized protein 70.4 4.3 0.00015 29.7 3.8 32 83-114 15-46 (331)
16 4gop_B Putative uncharacterize 68.4 16 0.00056 23.7 6.0 35 23-61 82-116 (136)
17 2vw9_A Single-stranded DNA bin 67.9 16 0.00054 23.9 5.8 52 11-62 48-108 (134)
18 1e1o_A Lysyl-tRNA synthetase, 64.4 26 0.00089 28.2 7.5 47 13-62 93-148 (504)
19 3mxn_B RECQ-mediated genome in 63.4 28 0.00094 23.7 6.3 32 26-61 99-130 (150)
20 1wjj_A Hypothetical protein F2 60.6 8.2 0.00028 26.1 3.3 32 13-44 74-105 (145)
21 1z9f_A Single-strand binding p 59.6 17 0.00059 24.5 4.9 52 11-62 62-122 (153)
22 2pi2_A Replication protein A 3 57.4 33 0.0011 25.0 6.5 35 23-61 117-151 (270)
23 1qvc_A Single stranded DNA bin 57.4 19 0.00064 23.9 4.7 53 10-62 51-115 (145)
24 1txy_A Primosomal replication 56.6 33 0.0011 21.3 6.2 46 14-60 50-101 (104)
25 3plx_B Aspartate 1-decarboxyla 55.9 11 0.00036 24.2 3.1 23 16-38 44-66 (102)
26 3koj_A Uncharacterized protein 55.4 33 0.0011 21.7 5.5 47 11-57 52-107 (108)
27 2fxq_A Single-strand binding p 54.7 27 0.00091 25.3 5.6 52 11-62 171-230 (264)
28 3eiv_A Single-stranded DNA-bin 54.6 32 0.0011 24.4 5.7 49 10-58 51-108 (199)
29 3ulp_A Single-strand binding p 54.3 31 0.0011 22.0 5.3 52 10-61 52-119 (124)
30 1vc3_B L-aspartate-alpha-decar 54.3 10 0.00035 24.0 2.7 26 15-40 44-69 (96)
31 1uhe_A Aspartate 1-decarboxyla 54.0 12 0.00041 23.7 3.1 28 13-40 40-67 (97)
32 2z0t_A Putative uncharacterize 53.8 5.6 0.00019 25.7 1.5 39 12-60 20-58 (109)
33 1se8_A Single-strand binding p 53.5 29 0.00097 26.0 5.6 52 11-62 175-234 (301)
34 1n9w_A Aspartyl-tRNA synthetas 53.3 48 0.0016 25.9 7.1 45 14-62 43-88 (422)
35 3dm3_A Replication factor A; p 53.1 39 0.0013 21.1 7.6 42 13-55 53-95 (105)
36 3oug_A Aspartate 1-decarboxyla 52.7 13 0.00043 24.3 3.1 25 15-39 71-95 (114)
37 3bju_A Lysyl-tRNA synthetase; 51.2 46 0.0016 26.8 6.9 47 13-62 85-141 (521)
38 3a74_A Lysyl-tRNA synthetase; 49.5 37 0.0012 27.2 6.0 47 13-62 85-139 (493)
39 4ex5_A Lysine--tRNA ligase; st 49.4 38 0.0013 27.5 6.1 47 13-62 115-169 (529)
40 3nem_A Aspartyl-tRNA synthetas 49.0 75 0.0026 24.9 7.7 49 13-62 45-101 (438)
41 3afp_A Single-stranded DNA-bin 48.3 44 0.0015 22.7 5.5 46 11-56 52-106 (168)
42 3au7_A TIAS, putative uncharac 47.8 23 0.00078 27.9 4.4 41 13-59 315-361 (402)
43 2kct_A Cytochrome C-type bioge 46.7 33 0.0011 21.4 4.3 28 12-39 43-70 (94)
44 4dka_C RNA-editing complex pro 46.3 35 0.0012 21.9 4.3 31 12-42 41-77 (105)
45 2fxq_A Single-strand binding p 43.2 68 0.0023 23.1 6.2 52 11-62 51-110 (264)
46 2kbn_A Conserved protein; nucl 42.6 37 0.0013 21.2 4.2 32 13-44 47-79 (109)
47 2c45_A Aspartate 1-decarboxyla 41.8 22 0.00076 23.9 3.0 23 15-37 68-90 (139)
48 1se8_A Single-strand binding p 41.7 60 0.002 24.2 5.8 52 11-62 51-112 (301)
49 1wyd_A Hypothetical aspartyl-t 41.5 75 0.0026 24.8 6.5 48 14-62 46-98 (429)
50 2vb2_X Copper protein, cation 41.5 17 0.00059 22.2 2.3 26 12-37 47-73 (88)
51 1c0a_A Aspartyl tRNA synthetas 41.4 75 0.0026 25.9 6.7 50 13-62 44-105 (585)
52 1o7i_A SSB, SSO2364, single st 41.1 42 0.0014 21.1 4.3 29 13-41 50-79 (119)
53 2k50_A Replication factor A re 40.9 41 0.0014 20.8 4.2 27 13-39 55-84 (115)
54 2vqe_Q 30S ribosomal protein S 40.4 32 0.0011 22.0 3.5 30 11-42 37-66 (105)
55 1x54_A Asparaginyl-tRNA synthe 38.2 66 0.0023 25.2 5.7 48 14-62 46-101 (434)
56 2do3_A Transcription elongatio 37.2 9.3 0.00032 22.7 0.5 17 20-36 12-28 (69)
57 1pqh_A Aspartate 1-decarboxyla 36.9 19 0.00066 24.3 2.1 26 15-40 85-110 (143)
58 2cu3_A Unknown function protei 36.4 20 0.0007 20.1 1.9 25 11-35 27-58 (64)
59 1eov_A ASPRS, aspartyl-tRNA sy 35.5 1.3E+02 0.0044 23.9 7.1 50 13-62 66-130 (487)
60 2z1c_A Hydrogenase expression/ 34.0 22 0.00075 21.3 1.9 16 20-35 30-45 (75)
61 3m4p_A Ehasnrs, asparaginyl-tR 33.5 1.4E+02 0.0048 23.5 7.0 50 13-62 60-122 (456)
62 3lgj_A Single-stranded DNA-bin 33.2 89 0.003 21.2 5.2 53 10-62 69-135 (169)
63 1vjk_A Molybdopterin convertin 32.8 30 0.001 21.1 2.4 28 8-35 62-92 (98)
64 3j20_R 30S ribosomal protein S 32.3 50 0.0017 21.3 3.5 21 17-37 71-91 (113)
65 1v1q_A Primosomal replication 31.5 1.1E+02 0.0038 20.1 7.8 49 13-61 66-119 (134)
66 4dam_A Single-stranded DNA-bin 31.5 71 0.0024 20.6 4.3 50 10-59 61-118 (128)
67 2exd_A NFED short homolog; mem 31.2 30 0.001 20.7 2.2 14 24-37 46-59 (80)
68 2kl0_A Putative thiamin biosyn 31.1 26 0.00089 20.5 1.9 25 11-35 28-59 (73)
69 3r8n_Q 30S ribosomal protein S 31.1 25 0.00085 21.3 1.8 18 23-41 47-64 (80)
70 2xgt_A Asparaginyl-tRNA synthe 30.9 1.6E+02 0.0054 22.9 6.9 49 13-61 41-96 (435)
71 2l55_A SILB,silver efflux prot 30.7 36 0.0012 20.5 2.5 25 13-37 34-59 (82)
72 4gs3_A Single-stranded DNA-bin 30.2 1.1E+02 0.0036 19.4 6.1 50 10-59 48-105 (107)
73 2qcp_X Cation efflux system pr 30.1 20 0.0007 21.4 1.3 26 12-37 39-65 (80)
74 1tyg_B YJBS; alpha beta barrel 30.0 24 0.00082 21.6 1.6 26 11-36 50-82 (87)
75 2xzm_Q Ribosomal protein S17 c 29.9 55 0.0019 22.4 3.6 21 17-37 107-127 (157)
76 1eqq_A Single stranded DNA bin 29.7 27 0.00093 24.1 2.0 51 11-61 53-115 (178)
77 2g1e_A Hypothetical protein TA 29.6 38 0.0013 19.8 2.5 26 10-35 52-84 (90)
78 1qd7_I S17 ribosomal protein; 29.3 46 0.0016 20.5 2.8 29 12-42 37-65 (89)
79 3u5c_L RP41, S18, YS12, 40S ri 29.1 58 0.002 22.2 3.6 27 14-41 105-131 (156)
80 1f0z_A THis protein; ubiquitin 28.7 18 0.00062 20.4 0.8 25 11-35 29-60 (66)
81 3dwg_C 9.5 kDa culture filtrat 28.3 41 0.0014 20.0 2.5 29 7-35 52-87 (93)
82 3pgz_A Single-stranded DNA-bin 28.1 1.1E+02 0.0037 21.5 4.9 52 11-62 73-138 (193)
83 2e6z_A Transcription elongatio 28.1 21 0.00071 20.1 1.0 11 25-35 7-17 (59)
84 3b9c_A HSPC159; beta sandwich, 28.0 41 0.0014 22.2 2.6 26 15-40 9-34 (144)
85 1l0w_A Aspartyl-tRNA synthetas 27.7 1.8E+02 0.0061 23.7 6.8 50 13-62 45-103 (580)
86 2d7e_A Primosomal protein N'; 26.9 36 0.0012 21.0 2.1 23 10-34 12-34 (105)
87 1ixl_A Hypothetical protein PH 26.9 1E+02 0.0035 18.9 4.4 31 11-41 66-96 (131)
88 1sr3_A APO-CCME; OB fold, beta 26.7 94 0.0032 20.6 4.2 28 12-39 60-87 (136)
89 2hba_A BL17, 50S ribosomal pro 26.6 31 0.0011 19.1 1.5 21 14-34 1-21 (52)
90 3cdd_A Prophage MUSO2, 43 kDa 26.4 51 0.0018 24.6 3.2 33 2-34 23-65 (361)
91 1xne_A Hypothetical protein PF 26.0 28 0.00095 22.4 1.4 25 12-36 21-45 (113)
92 3k7u_C MP18 RNA editing comple 25.4 74 0.0025 21.2 3.6 33 10-42 50-87 (148)
93 4ah6_A Aspartate--tRNA ligase, 25.4 1.9E+02 0.0066 23.8 6.7 50 13-62 50-113 (617)
94 2f41_A Transcription factor FA 25.0 74 0.0025 19.6 3.4 27 13-39 60-86 (121)
95 1bxv_A Plastocyanin; copper pr 24.9 74 0.0025 18.2 3.2 11 25-35 22-32 (91)
96 3nv1_A Galectin-9, galectin 9 24.8 59 0.002 21.1 2.9 23 18-40 10-32 (138)
97 3bnv_A CJ0977; virulence facto 24.8 1E+02 0.0034 20.1 4.1 30 12-41 86-115 (152)
98 3d6r_B NS1, NS1A, non-structur 24.5 43 0.0015 22.4 2.2 20 94-114 91-112 (158)
99 3cp0_A Membrane protein implic 24.2 49 0.0017 19.4 2.2 14 24-37 58-71 (82)
100 3jxo_A TRKA-N domain protein; 23.8 43 0.0015 19.3 1.9 14 24-37 59-72 (86)
101 4b6m_A Tubulin-specific chaper 23.6 61 0.0021 19.7 2.6 18 24-41 4-26 (84)
102 2isb_A Fumarase, FUM-1; NP_069 23.3 24 0.00082 25.0 0.7 27 14-40 15-45 (192)
103 1w9z_A VP9, bannavirus VP9; vi 23.2 9 0.00031 27.8 -1.5 21 20-40 212-232 (283)
104 3en2_A Probable primosomal rep 22.7 95 0.0033 19.3 3.5 29 14-42 50-81 (101)
105 1j6q_A Cytochrome C maturation 22.6 94 0.0032 20.6 3.6 28 12-39 65-92 (136)
106 1q0v_A Hydrophilic protein; ha 22.6 46 0.0016 20.3 1.9 12 101-112 13-24 (81)
107 1wru_A 43 kDa tail protein; ba 22.6 56 0.0019 24.7 2.8 32 3-34 22-56 (379)
108 1r6x_A ATP:sulfate adenylyltra 22.5 72 0.0025 24.9 3.4 39 1-41 71-117 (395)
109 3i7f_A Aspartyl-tRNA synthetas 22.4 2E+02 0.0069 23.3 6.2 49 13-61 91-152 (548)
110 3rvc_A NS1, NS1A, non-structur 22.2 52 0.0018 21.8 2.2 20 94-114 85-106 (152)
111 3zxf_A Galectin-7; sugar bindi 21.9 31 0.0011 22.5 1.1 22 18-39 8-29 (138)
112 2zkq_q 40S ribosomal protein S 21.9 52 0.0018 22.6 2.2 13 25-37 119-131 (158)
113 2f3x_A Transcription factor FA 21.9 1.2E+02 0.004 20.0 4.0 28 12-39 95-122 (157)
114 2yro_A Galectin-8; GAL-BIND le 21.8 47 0.0016 22.2 2.0 27 14-40 15-41 (155)
115 3v2d_E 50S ribosomal protein L 21.6 55 0.0019 23.4 2.4 33 7-39 70-109 (206)
116 3hur_A Alanine racemase; struc 21.6 41 0.0014 26.0 1.8 13 25-37 328-340 (395)
117 1ryj_A Unknown; beta/alpha pro 21.5 53 0.0018 18.6 2.0 25 11-35 37-64 (70)
118 1gvh_A Flavohemoprotein; oxido 21.4 84 0.0029 23.5 3.6 28 12-39 215-250 (396)
119 2k75_A Uncharacterized protein 21.3 1.5E+02 0.005 18.3 4.2 25 13-40 50-75 (106)
120 3i8t_A Galectin-4; S-type lect 20.8 77 0.0026 21.4 2.9 22 18-39 31-52 (164)
121 2k14_A YUAF protein; NFED-like 20.6 60 0.002 19.1 2.1 12 26-37 60-71 (84)
122 1xe1_A Hypothetical protein PF 20.5 64 0.0022 20.9 2.3 21 15-35 77-97 (116)
123 3i4o_A Translation initiation 20.5 48 0.0017 19.9 1.6 11 25-35 53-63 (79)
124 1dul_A Signal recognition part 20.3 13 0.00043 22.0 -1.0 12 2-13 40-51 (69)
125 2zjr_B 50S ribosomal protein L 20.2 55 0.0019 23.4 2.1 16 23-38 93-108 (211)
126 1v47_A ATP sulfurylase; produc 20.2 1.2E+02 0.0042 23.0 4.2 36 1-40 45-87 (349)
127 3r8s_D 50S ribosomal protein L 20.1 61 0.0021 23.2 2.3 17 23-39 98-114 (209)
No 1
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.91 E-value=2.8e-24 Score=173.91 Aligned_cols=97 Identities=20% Similarity=0.187 Sum_probs=84.5
Q ss_pred CCCCCccEEEEEEeeCccc------ceecCCeEEEEEEEEEcCCCCccceEEEEEEEEEccccccCCCCCCCCCHHH---
Q psy13876 6 GASMVGKHWILGLLRYWQN------PTMLQNYCILHGLFVCSSPGLLSDTYIEAQRIQCLSKALEDDKPAGTLSEEE--- 76 (118)
Q Consensus 6 ~~g~~Pr~i~v~l~~dLvd------~~~pGd~V~v~Gi~~~~~~~~~~~~yl~a~~I~~~~~~~~~~~~~~~~~~e~--- 76 (118)
+.|++||+++|+|++|||| +|+|||+|+|+|||+.. ||+||||++ ++.+ ....+++++
T Consensus 129 ~~G~~Prsi~v~l~~dLvd~~~~~~~~~pGd~V~v~GI~~~~--------~l~a~~i~~-~~~~----~~~~~t~ed~~~ 195 (506)
T 3f8t_A 129 RGAERLEHAIVDTGSELVAVRLHGHRLGPGLRVEILGIVRSA--------TLDALEVHK-KDPI----PEVHPDPAELEE 195 (506)
T ss_dssp EESSSEEEEEEECSSSEEEEECTTCCCCTTCEEEEEEEEETT--------EEEEEEEEE-ECSS----CCCCCCHHHHHH
T ss_pred CCCCCCceEEEEecccccCcccccccccCCCEEEEEEEEEEe--------EEEEEEEEE-cCcc----ccCCCCHHHHHH
Confidence 4789999999999999999 99999999999999965 999999998 3333 235678766
Q ss_pred HHhhc-ChhHHHHHHHhhcccccCcHHHHHHHHHHHhcCccC
Q psy13876 77 MAELG-GDQFYSKLAASLAPEIYGHEDVKKALLLLLVGGVDR 117 (118)
Q Consensus 77 i~~l~-~~~~~~~L~~SiaP~I~G~~~vK~ailL~L~GG~~k 117 (118)
|++|+ + ++|+.|++|||| ||||+++|+|++|+|+||..|
T Consensus 196 i~~l~~~-~~~~~l~~sIap-I~G~e~vK~aLll~L~GG~~k 235 (506)
T 3f8t_A 196 FRELADK-DPLTTFARAIAP-LPGAEEVGKMLALQLFSCVGK 235 (506)
T ss_dssp HHHHHHS-CHHHHHHHHHCC-STTCHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHH-HHHHHHHHHhcc-cCCCHHHHHHHHHHHcCCccc
Confidence 45566 7 999999999999 999999999999999999743
No 2
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.88 E-value=2.2e-23 Score=171.90 Aligned_cols=107 Identities=24% Similarity=0.375 Sum_probs=92.3
Q ss_pred CCCCCccEEEEEEeeCcccceecCCeEEEEEEEEEcCC-------CCccceEEEEEEEEEccccccCCCCCCCCCHHH--
Q psy13876 6 GASMVGKHWILGLLRYWQNPTMLQNYCILHGLFVCSSP-------GLLSDTYIEAQRIQCLSKALEDDKPAGTLSEEE-- 76 (118)
Q Consensus 6 ~~g~~Pr~i~v~l~~dLvd~~~pGd~V~v~Gi~~~~~~-------~~~~~~yl~a~~I~~~~~~~~~~~~~~~~~~e~-- 76 (118)
++|++||+++|+|++||||+|+|||+|+|||||+..+. +++|++|++|++|+..++... ..++++++
T Consensus 199 ~~g~~pr~~~v~l~~dlv~~~~pGd~v~v~Gi~~~~~~~~~~~~~~~~~~~~i~a~~i~~~~~~~~----~~~~t~~~~~ 274 (595)
T 3f9v_A 199 PSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQKVLD----EVIISEEDEK 274 (595)
T ss_dssp CTTSCCCEEEEEEEGGGTTCSCSSCEEEEEEECCCCCSSTTSCTTCCCCCCCCEEEEEEECCCCCC----CCCCTTSTHH
T ss_pred CCCCCCceEEEEEecccccccccCCEEEEEEEEEecccccccCCCcceEEEEEEEEeecccccccc----cCCCCHHHHH
Confidence 57899999999999999999999999999999987742 368999999999998776543 23455544
Q ss_pred -HHhhc-ChhHHHHHHHhhcccccCcHHHHHHHHHHHhcCcc
Q psy13876 77 -MAELG-GDQFYSKLAASLAPEIYGHEDVKKALLLLLVGGVD 116 (118)
Q Consensus 77 -i~~l~-~~~~~~~L~~SiaP~I~G~~~vK~ailL~L~GG~~ 116 (118)
+.+++ ++++|+.|.+|++|+|+|++++|+|++++|+||.+
T Consensus 275 ~i~~~~~~~~~~~~l~~~l~~~I~G~e~vk~al~~~l~~g~~ 316 (595)
T 3f9v_A 275 KIKDLAKDPWIRDRIISSIAPSIYGHWELKEALALALFGGVP 316 (595)
T ss_dssp HHHTTSSTTTGGGTHHHHTSSTTSCCHHHHHHHTTTTTCCCC
T ss_pred HHHHHhhCcHHHHHHHHhhcchhcChHHHHHHHHHHHhCCCc
Confidence 55666 89999999999999999999999999999999964
No 3
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=99.81 E-value=1.6e-20 Score=142.58 Aligned_cols=83 Identities=14% Similarity=0.146 Sum_probs=50.5
Q ss_pred cCCCCCccEEEEEEeeCcccceecCCeEEEEEEEEEcC--CCCccceEEEEEEEEEccccccCCCCCCCCCHHH---HHh
Q psy13876 5 TGASMVGKHWILGLLRYWQNPTMLQNYCILHGLFVCSS--PGLLSDTYIEAQRIQCLSKALEDDKPAGTLSEEE---MAE 79 (118)
Q Consensus 5 ~~~g~~Pr~i~v~l~~dLvd~~~pGd~V~v~Gi~~~~~--~~~~~~~yl~a~~I~~~~~~~~~~~~~~~~~~e~---i~~ 79 (118)
.++|++||+++|+|++||||+|+|||+|+|||||+..+ ..++|++||+||||+..++.++ ..++|+++ |++
T Consensus 191 vp~G~~Prsi~V~l~~dLvd~~~PGDrV~vtGI~~~~~~~~~~~~~~~l~a~~I~~~~~~~~----~~~~t~ed~~~i~~ 266 (279)
T 1ltl_A 191 LSGGEQPRQITVVLEDDLVDTLTPGDIVRVTGTLRTVRDERTKRFKNFIYGNYTEFLEQEFE----ELQISEEDEEKIKE 266 (279)
T ss_dssp CCSSCCCCEEEEEEEGGGTTCCCTTCEEEEEEEEEEEEETTTTEEEEEEEEEECCBC-----------------------
T ss_pred CCCCCCCeEEEEEEcccccCccCCCCEEEEEEEEEEeeCCCCceEEEEEEEEEEEEecCccc----cCCCCHHHHHHHHH
Confidence 35899999999999999999999999999999999864 3578999999999998776543 24566654 666
Q ss_pred hc-ChhHHHHHHH
Q psy13876 80 LG-GDQFYSKLAA 91 (118)
Q Consensus 80 l~-~~~~~~~L~~ 91 (118)
|+ +||+|++|++
T Consensus 267 ls~~~~iy~~L~~ 279 (279)
T 1ltl_A 267 LAGDPNIYEKIIR 279 (279)
T ss_dssp -------------
T ss_pred HhcCCCHHHHhhC
Confidence 78 8999999874
No 4
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=99.64 E-value=4.2e-16 Score=117.41 Aligned_cols=57 Identities=11% Similarity=0.109 Sum_probs=50.0
Q ss_pred cCCCCCccEEEEEEeeCcccceecCCeEEEEEEEEEcCC-------CCccceEEEEEEEEEccc
Q psy13876 5 TGASMVGKHWILGLLRYWQNPTMLQNYCILHGLFVCSSP-------GLLSDTYIEAQRIQCLSK 61 (118)
Q Consensus 5 ~~~g~~Pr~i~v~l~~dLvd~~~pGd~V~v~Gi~~~~~~-------~~~~~~yl~a~~I~~~~~ 61 (118)
.++|++||+++|+|++||||+|+|||+|+|||||+..+. +++|++||+||||+..++
T Consensus 204 vp~G~~Prsi~v~l~~dLvd~~~PGDrV~vtGI~~~~~~~~~~~~~~~~~~~yl~an~I~~~~~ 267 (268)
T 2vl6_A 204 VPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQK 267 (268)
T ss_dssp SCTTSCCCEEEEEEEGGGTTSSCTTCEEEEEEEEEEECSSTTCCSSCCEEEEEEEEEEEEEC--
T ss_pred CCCCCCCcEEEEEEccCccCcccCCCEEEEEEEEEEeecccccCCCceEEEEEEEEEEEEEecc
Confidence 458999999999999999999999999999999988642 378999999999998764
No 5
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=91.92 E-value=0.44 Score=31.02 Aligned_cols=44 Identities=9% Similarity=0.028 Sum_probs=35.1
Q ss_pred EEEEEEeeCccc--ceecCCeEEEEEEEEEcCCCCccceEEEEEEEEEcc
Q psy13876 13 HWILGLLRYWQN--PTMLQNYCILHGLFVCSSPGLLSDTYIEAQRIQCLS 60 (118)
Q Consensus 13 ~i~v~l~~dLvd--~~~pGd~V~v~Gi~~~~~~~~~~~~yl~a~~I~~~~ 60 (118)
+|.|++++++-. .+.|+|+|+|.|-+-... ..+.|++.+|++.+
T Consensus 63 ~I~VeId~~~w~g~~v~p~~~Vri~GevDkd~----~~~eIdV~~i~~~~ 108 (109)
T 1nnx_A 63 TINVDIDHKRWNGVTVTPKDTVEIQGEVDKDW----NSVEIDVKQIRKVN 108 (109)
T ss_dssp EEEEECCGGGSTTCCCCTTSCEEEEEEEEEET----TEEEEEEEEEEEC-
T ss_pred cEEEEEChhhcCCcccCCCCEEEEEEEECCCC----CceEEEEEEEEEcc
Confidence 588889998777 889999999999998543 35678888888753
No 6
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=82.43 E-value=1.1 Score=36.11 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=29.4
Q ss_pred hhHHHHHHHhhcccccCcHHHHHHHHHHHhcCc
Q psy13876 83 DQFYSKLAASLAPEIYGHEDVKKALLLLLVGGV 115 (118)
Q Consensus 83 ~~~~~~L~~SiaP~I~G~~~vK~ailL~L~GG~ 115 (118)
.+.++.+.++++|.|+|++.+++++++.+.+|.
T Consensus 10 ~~~~~~l~~~l~~~ivGq~~~i~~l~~al~~~~ 42 (500)
T 3nbx_X 10 AERISRLSSSLEKGLYERSHAIRLCLLAALSGE 42 (500)
T ss_dssp HHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCC
Confidence 457889999999999999999999999988764
No 7
>2wkd_A ORF34P2; SSB, single-stranded DNA binding, DNA binding protein; 2.10A {Lactococcus phage P2} PDB: 2wkc_A
Probab=81.62 E-value=1.3 Score=28.82 Aligned_cols=24 Identities=8% Similarity=0.205 Sum_probs=18.8
Q ss_pred CcccceecCCeEEEEEEEEEcCCC
Q psy13876 21 YWQNPTMLQNYCILHGLFVCSSPG 44 (118)
Q Consensus 21 dLvd~~~pGd~V~v~Gi~~~~~~~ 44 (118)
=|-|++++||.|+|.|-.++..+|
T Consensus 49 f~pd~v~~GDivTvsgri~~ke~G 72 (119)
T 2wkd_A 49 FMPDFIQMGDTVTVSGRVQAKESG 72 (119)
T ss_dssp ECCTTCCTTCEEEEEEEEEEC---
T ss_pred eccccccCCcEEEEeceeeeeccC
Confidence 466899999999999999988765
No 8
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=79.35 E-value=4.9 Score=25.59 Aligned_cols=53 Identities=13% Similarity=-0.016 Sum_probs=39.2
Q ss_pred CccEEEEEEeeCccc----ceecCCeEEEEEEEEEcC----CC-CccceEEEEEEEEEcccc
Q psy13876 10 VGKHWILGLLRYWQN----PTMLQNYCILHGLFVCSS----PG-LLSDTYIEAQRIQCLSKA 62 (118)
Q Consensus 10 ~Pr~i~v~l~~dLvd----~~~pGd~V~v~Gi~~~~~----~~-~~~~~yl~a~~I~~~~~~ 62 (118)
-+..+.|.+-+.+.+ .++.|+.|.|.|-++... .| ..+.+.+.|.+|+.++..
T Consensus 48 ~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~l~~~~~~d~dG~~~~~~ev~a~~i~~l~~~ 109 (116)
T 3vdy_A 48 EADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTRSYENEEGVNVYVTEVLADTVRFMDPK 109 (116)
T ss_dssp CEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEEEC----CCEEEEEEEEEEEEECC--
T ss_pred ccEEEEEEEECHHHHHHHHhCCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 456789999888764 478999999999998762 24 456777999999887654
No 9
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=79.05 E-value=9.3 Score=24.75 Aligned_cols=48 Identities=10% Similarity=0.016 Sum_probs=37.5
Q ss_pred EEEEEeeCcc---cceecCCeEEEEEEEEEcCCCCccceEEEEEEEEEcccc
Q psy13876 14 WILGLLRYWQ---NPTMLQNYCILHGLFVCSSPGLLSDTYIEAQRIQCLSKA 62 (118)
Q Consensus 14 i~v~l~~dLv---d~~~pGd~V~v~Gi~~~~~~~~~~~~yl~a~~I~~~~~~ 62 (118)
+.|.+-+.+. ..++.|+.|.|.|-++.+.... +.+.|.|.+|+..+..
T Consensus 49 i~vv~~Gk~AE~~~~l~kGs~V~VeGrL~trs~~G-~kl~l~a~~Ie~l~~~ 99 (115)
T 3fhw_A 49 ISAVALGDLALLLADTPLGTEMQVQGFLAPARKDS-VKVKLHLQQARRIAGS 99 (115)
T ss_dssp EEEEEETHHHHHHTTCCTTCEEEEEEEEEESSTTC-SSEEEEEEEEEECCCS
T ss_pred EEEEEEhHHHHhhhccCCCCEEEEEEEEEECCCCC-CEEEEEEEEEEEcCCC
Confidence 5677766655 5788899999999999875333 7889999999887654
No 10
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=76.78 E-value=7.9 Score=24.46 Aligned_cols=45 Identities=13% Similarity=0.044 Sum_probs=33.5
Q ss_pred EEEEEeeCc--ccceecCCeEEEEEEEEEcCCCCccceEEEEEEEEEc
Q psy13876 14 WILGLLRYW--QNPTMLQNYCILHGLFVCSSPGLLSDTYIEAQRIQCL 59 (118)
Q Consensus 14 i~v~l~~dL--vd~~~pGd~V~v~Gi~~~~~~~~~~~~yl~a~~I~~~ 59 (118)
+.|.+-+.+ +.+++.|+.|.|.|-++.++-+.. .+.|++.+|+..
T Consensus 55 i~vv~~gk~Ae~~~l~KG~~v~veGrL~~rs~~~~-~lvlhi~~i~~i 101 (103)
T 3k8a_A 55 IPARILGRQAEEWQYRQGDCATVEGFLAQKSRRSL-MPMLRIQNIKEY 101 (103)
T ss_dssp EEEEEEHHHHHHSTTCTTCEEEEEEEEEESSSSCC-CEEEEEEEEEEC
T ss_pred EEEEEEhHHhhhhccCCCCEEEEEEEEEECccCCc-cEEEEEEEEEEc
Confidence 566665544 466888999999999998853333 888888888764
No 11
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=74.47 E-value=6.1 Score=24.45 Aligned_cols=30 Identities=7% Similarity=-0.116 Sum_probs=24.6
Q ss_pred EEEEEEeeCccc-ceecCCeEEEEEEEEEcC
Q psy13876 13 HWILGLLRYWQN-PTMLQNYCILHGLFVCSS 42 (118)
Q Consensus 13 ~i~v~l~~dLvd-~~~pGd~V~v~Gi~~~~~ 42 (118)
++.+.+-++.++ .++|||.|.|.|-.+...
T Consensus 50 ~I~~tlW~~~~~~~i~~Gdvv~i~g~v~~~~ 80 (97)
T 3e0e_A 50 SIRGTLWNELADFEVKKGDIAEVSGYVKQGY 80 (97)
T ss_dssp EEEEEEEGGGGGCCCCTTCEEEEEEEEEEC-
T ss_pred cEEEEEECCccccccCCCCEEEEEEEEEEcC
Confidence 688888999999 599999999999665443
No 12
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=74.25 E-value=8.1 Score=25.21 Aligned_cols=52 Identities=17% Similarity=0.068 Sum_probs=37.2
Q ss_pred ccEEEEEEeeC-cc----cceecCCeEEEEEEEEEcC----CC-CccceEEEEEEEEEcccc
Q psy13876 11 GKHWILGLLRY-WQ----NPTMLQNYCILHGLFVCSS----PG-LLSDTYIEAQRIQCLSKA 62 (118)
Q Consensus 11 Pr~i~v~l~~d-Lv----d~~~pGd~V~v~Gi~~~~~----~~-~~~~~yl~a~~I~~~~~~ 62 (118)
+-.+.|.+-++ +. ..++.|+.|.|.|-++... .| ..+.+-+.|.+|+-+...
T Consensus 66 t~w~~v~~wg~~~Ae~~~~~l~KG~~V~V~G~L~~~~~~d~dG~~r~~~ev~a~~i~~l~~~ 127 (132)
T 3ull_A 66 TTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQ 127 (132)
T ss_dssp EEEEEEEECSTTHHHHHHHHCCTTCEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC---
T ss_pred eEEEEEEEEchHHHHHHHhhCCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 45677888774 54 4578899999999998763 34 466777999999877654
No 13
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=72.95 E-value=9.9 Score=25.79 Aligned_cols=53 Identities=11% Similarity=0.016 Sum_probs=39.3
Q ss_pred ccEEEEEEeeCccc----ceecCCeEEEEEEEEEcC----CC-CccceEEEEEEEEEccccc
Q psy13876 11 GKHWILGLLRYWQN----PTMLQNYCILHGLFVCSS----PG-LLSDTYIEAQRIQCLSKAL 63 (118)
Q Consensus 11 Pr~i~v~l~~dLvd----~~~pGd~V~v~Gi~~~~~----~~-~~~~~yl~a~~I~~~~~~~ 63 (118)
+-.+.|.+-+.+.+ .++.|+.|.|.|-++... .| ..+.+.|.|.+|+.+....
T Consensus 55 t~~i~vv~wg~~Ae~~~~~l~KG~~V~VeG~L~~~~~~dkdG~~r~~~eV~a~~i~~L~~k~ 116 (158)
T 3tqy_A 55 TEWHRIAFFNRLAEIVGEYLRKGSKIYIEGSLRTRKWQDKNGVDRYTTEIIANEMHMLDNRG 116 (158)
T ss_dssp EEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEECC---
T ss_pred eEEEEEEEEhHHHHHHHhhcCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEeEEEEccCCc
Confidence 56788988887764 478999999999998762 34 4567779999998876543
No 14
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=71.38 E-value=8.4 Score=25.05 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=27.5
Q ss_pred ccceecCCeEEEEEEEEEcCCCCccceEEEEEEEEEccc
Q psy13876 23 QNPTMLQNYCILHGLFVCSSPGLLSDTYIEAQRIQCLSK 61 (118)
Q Consensus 23 vd~~~pGd~V~v~Gi~~~~~~~~~~~~yl~a~~I~~~~~ 61 (118)
...+++|+.|.|.|.++.... +.+|.+.+|...+.
T Consensus 77 ~~~~~~g~yVrV~G~l~~f~g----~~qi~~~~ir~v~d 111 (132)
T 3kdf_D 77 NTVVPPETYVKVAGHLRSFQN----KKSLVAFKIMPLED 111 (132)
T ss_dssp -CCCCTTCEEEEEEEEEEETT----EEEEEEEEEEECSS
T ss_pred cccccCCCEEEEEEEEEeECC----EEEEEEEEEEEcCC
Confidence 467899999999999997652 46788888887754
No 15
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=70.36 E-value=4.3 Score=29.73 Aligned_cols=32 Identities=13% Similarity=0.220 Sum_probs=28.6
Q ss_pred hhHHHHHHHhhcccccCcHHHHHHHHHHHhcC
Q psy13876 83 DQFYSKLAASLAPEIYGHEDVKKALLLLLVGG 114 (118)
Q Consensus 83 ~~~~~~L~~SiaP~I~G~~~vK~ailL~L~GG 114 (118)
.+.++.+..++.+.|+|++.+++++++.+.+|
T Consensus 15 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~ 46 (331)
T 2r44_A 15 RNKIKEVIDEVGKVVVGQKYMINRLLIGICTG 46 (331)
T ss_dssp HHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccceeCcHHHHHHHHHHHHcC
Confidence 46788899999999999999999999988765
No 16
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=68.42 E-value=16 Score=23.72 Aligned_cols=35 Identities=9% Similarity=0.048 Sum_probs=27.8
Q ss_pred ccceecCCeEEEEEEEEEcCCCCccceEEEEEEEEEccc
Q psy13876 23 QNPTMLQNYCILHGLFVCSSPGLLSDTYIEAQRIQCLSK 61 (118)
Q Consensus 23 vd~~~pGd~V~v~Gi~~~~~~~~~~~~yl~a~~I~~~~~ 61 (118)
...+++|+.|.|.|.++.... +.+|.+.+|...+.
T Consensus 82 ~~~~~~g~yVrV~G~v~~f~g----~~qi~~~~ir~v~d 116 (136)
T 4gop_B 82 ASEIRNNVYVRVLGTLKSFQN----RRSISSGHMRPVID 116 (136)
T ss_dssp CCSCCTTCEEEEEEEEEEETT----EEEEEESEEEECSS
T ss_pred ccccCCCCEEEEEEEEEEeCC----EEEEEEEEEEECCC
Confidence 568999999999999987652 46788888877654
No 17
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=67.86 E-value=16 Score=23.93 Aligned_cols=52 Identities=17% Similarity=0.066 Sum_probs=39.0
Q ss_pred ccEEEEEEeeCccc----ceecCCeEEEEEEEEEcC----CC-CccceEEEEEEEEEcccc
Q psy13876 11 GKHWILGLLRYWQN----PTMLQNYCILHGLFVCSS----PG-LLSDTYIEAQRIQCLSKA 62 (118)
Q Consensus 11 Pr~i~v~l~~dLvd----~~~pGd~V~v~Gi~~~~~----~~-~~~~~yl~a~~I~~~~~~ 62 (118)
+-.+.|.+-+.+.+ .++.||.|.|.|-++... .| ..+.+-+.|.+|+.+...
T Consensus 48 t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~L~~~~~~dkdG~~r~~~ev~a~~i~~l~~~ 108 (134)
T 2vw9_A 48 VCFIDARLFGRTAEIANQYLSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDKK 108 (134)
T ss_dssp EEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCC
T ss_pred cEEEEEEEEcHHHHHHHHhCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEEEEEEccCC
Confidence 45788888887664 467899999999998762 23 345666888899877654
No 18
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=64.42 E-value=26 Score=28.15 Aligned_cols=47 Identities=19% Similarity=0.128 Sum_probs=35.1
Q ss_pred EEEEEEeeC---------cccceecCCeEEEEEEEEEcCCCCccceEEEEEEEEEcccc
Q psy13876 13 HWILGLLRY---------WQNPTMLQNYCILHGLFVCSSPGLLSDTYIEAQRIQCLSKA 62 (118)
Q Consensus 13 ~i~v~l~~d---------Lvd~~~pGd~V~v~Gi~~~~~~~~~~~~yl~a~~I~~~~~~ 62 (118)
.+.|++..+ ...++..||.|.|+|++...+.| +.-|.|..++...+.
T Consensus 93 ~iQvv~~~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~g---e~ei~~~~i~vl~~a 148 (504)
T 1e1o_A 93 RIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQTG---ELSIHCTELRLLTKA 148 (504)
T ss_dssp EEEEEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEECTTC---CEEEEEEEEEEEECC
T ss_pred eEEEEEECCcCCHHHHHHHHhcCCCCCEEEEEEEEEecCCc---eEEEEEEEEEEeccc
Confidence 477877654 44578999999999999887654 556777777776653
No 19
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=63.40 E-value=28 Score=23.74 Aligned_cols=32 Identities=19% Similarity=0.368 Sum_probs=26.2
Q ss_pred eecCCeEEEEEEEEEcCCCCccceEEEEEEEEEccc
Q psy13876 26 TMLQNYCILHGLFVCSSPGLLSDTYIEAQRIQCLSK 61 (118)
Q Consensus 26 ~~pGd~V~v~Gi~~~~~~~~~~~~yl~a~~I~~~~~ 61 (118)
+.+|.+|.|.|.+.... .+..|+|+-+..++.
T Consensus 99 l~~G~YVMV~G~v~~~s----~eP~i~AvKm~DLS~ 130 (150)
T 3mxn_B 99 LVPGKYVMVMGVVQACS----PEPCLQAVKMTDLSD 130 (150)
T ss_dssp CSTTCEEEEEEEEEECS----SSCEEEEEEEEECCS
T ss_pred cCCCCEEEEEEEEEecC----CCceEEEEEeeeCCC
Confidence 57999999999998654 278899988887765
No 20
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=60.58 E-value=8.2 Score=26.06 Aligned_cols=32 Identities=9% Similarity=-0.119 Sum_probs=26.8
Q ss_pred EEEEEEeeCcccceecCCeEEEEEEEEEcCCC
Q psy13876 13 HWILGLLRYWQNPTMLQNYCILHGLFVCSSPG 44 (118)
Q Consensus 13 ~i~v~l~~dLvd~~~pGd~V~v~Gi~~~~~~~ 44 (118)
.|.+.+-++.++.++|||.|.+.+.+....+|
T Consensus 74 ~I~ftlW~e~~~~l~~Gd~v~i~na~v~~~~G 105 (145)
T 1wjj_A 74 CILFTARNDQVDLMKPGATVILRNSRIDMFKG 105 (145)
T ss_dssp EEEEEECTTHHHHTCTTCEEEEEEEEEEEETT
T ss_pred EEEEEEecCCcCcCCCCCEEEEeccEEEeECC
Confidence 57788889999999999999999987655444
No 21
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=59.57 E-value=17 Score=24.46 Aligned_cols=52 Identities=6% Similarity=0.055 Sum_probs=38.6
Q ss_pred ccEEEEEEeeCccc----ceecCCeEEEEEEEEEcC----CC-CccceEEEEEEEEEcccc
Q psy13876 11 GKHWILGLLRYWQN----PTMLQNYCILHGLFVCSS----PG-LLSDTYIEAQRIQCLSKA 62 (118)
Q Consensus 11 Pr~i~v~l~~dLvd----~~~pGd~V~v~Gi~~~~~----~~-~~~~~yl~a~~I~~~~~~ 62 (118)
+-.+.|.+-+.+.+ .++.|+.|.|.|-++... .| ..+.+-+.|.+|+.+...
T Consensus 62 t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL~~~~~~dkdG~~r~~~eV~a~~i~~l~~~ 122 (153)
T 1z9f_A 62 TDFFRIVTFGRLAEFARTYLTKGRLVLVEGEMRMRRWETPTGEKRVSPEVVANVVRFMDRK 122 (153)
T ss_dssp EEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEC-------CCCEEEEEEEEEEECC--
T ss_pred eEEEEEEEECHHHHHHHhhCCCCCEEEEEEEEEeceEECCCCCEEEEEEEEEEEEEEccCC
Confidence 56789998887764 467899999999998763 23 456677889999887654
No 22
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=57.39 E-value=33 Score=25.00 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=27.2
Q ss_pred ccceecCCeEEEEEEEEEcCCCCccceEEEEEEEEEccc
Q psy13876 23 QNPTMLQNYCILHGLFVCSSPGLLSDTYIEAQRIQCLSK 61 (118)
Q Consensus 23 vd~~~pGd~V~v~Gi~~~~~~~~~~~~yl~a~~I~~~~~ 61 (118)
...+++|+.|.|.|.++..+ -+.+|.+.+|...+.
T Consensus 117 ~~~~~~G~yVrV~G~v~~f~----g~~qi~i~~ir~v~d 151 (270)
T 2pi2_A 117 NTVVPPETYVKVAGHLRSFQ----NKKSLVAFKIMPLED 151 (270)
T ss_dssp CCCCCTTCEEEEEEEEEEET----TEEEEEEEEEEECSC
T ss_pred hhcCCCCCEEEEEEEEEecC----CeeEEEEEEEEecCC
Confidence 46789999999999998765 246777778877653
No 23
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=57.35 E-value=19 Score=23.89 Aligned_cols=53 Identities=11% Similarity=-0.003 Sum_probs=38.2
Q ss_pred CccEEEEEEeeCccc----ceecCCeEEEEEEEEEcC----CC-CccceEE---EEEEEEEcccc
Q psy13876 10 VGKHWILGLLRYWQN----PTMLQNYCILHGLFVCSS----PG-LLSDTYI---EAQRIQCLSKA 62 (118)
Q Consensus 10 ~Pr~i~v~l~~dLvd----~~~pGd~V~v~Gi~~~~~----~~-~~~~~yl---~a~~I~~~~~~ 62 (118)
-+-.+.|.+-+.+.+ .++.||.|.|.|-++... .| ..+.+-| .|.+|+.+...
T Consensus 51 ~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~L~~~~~~d~dG~~r~~~ei~a~va~~i~~l~~~ 115 (145)
T 1qvc_A 51 QTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGR 115 (145)
T ss_dssp CCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEEECSSSSCEEEEEEEECTTCEEEECCCCS
T ss_pred ccEEEEEEEehHHHHHHHHhcCCCCEEEEEEEEEeeEEECCCCcEEEEEEEeeeEeCEEEEccCC
Confidence 467899999988765 468899999999998762 23 3455567 56677766543
No 24
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=56.55 E-value=33 Score=21.25 Aligned_cols=46 Identities=13% Similarity=0.221 Sum_probs=31.4
Q ss_pred EEEEEeeCcccc----eecCCeEEEEEEEEEcC--CCCccceEEEEEEEEEcc
Q psy13876 14 WILGLLRYWQNP----TMLQNYCILHGLFVCSS--PGLLSDTYIEAQRIQCLS 60 (118)
Q Consensus 14 i~v~l~~dLvd~----~~pGd~V~v~Gi~~~~~--~~~~~~~yl~a~~I~~~~ 60 (118)
+.|.+-+.+.+. ++.|+.|.|.|-++... .|.. .+-+.|.+|+-.+
T Consensus 50 ~~vv~~g~~Ae~~~~~l~KG~~V~V~G~L~~~~~~~G~~-r~~v~~~~i~~l~ 101 (104)
T 1txy_A 50 MPVIVSGHENQAITHSITVGSRITVQGFISCHKAKNGLS-KMVLHAEQIELID 101 (104)
T ss_dssp EEEEEESSTTHHHHTTCCTTCEEEEEEEEEC---------CCEEEEEEEEEC-
T ss_pred EEEEEEhHHHHHHHhhCCCCCEEEEEEEEEeccCCCCCE-EEEEEEEEEEECc
Confidence 788888887654 68899999999998762 2322 3778888887654
No 25
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=55.88 E-value=11 Score=24.19 Aligned_cols=23 Identities=9% Similarity=-0.071 Sum_probs=19.9
Q ss_pred EEEeeCcccceecCCeEEEEEEE
Q psy13876 16 LGLLRYWQNPTMLQNYCILHGLF 38 (118)
Q Consensus 16 v~l~~dLvd~~~pGd~V~v~Gi~ 38 (118)
+.|.+...-.++|||+|.|..--
T Consensus 44 I~lNGAAArl~~~GD~vII~aY~ 66 (102)
T 3plx_B 44 VCLNGAAARLAEVGDKVIIMSYA 66 (102)
T ss_dssp EEEEGGGGGGCCTTCEEEEEEEE
T ss_pred EEeCcHHHhccCCCCEEEEEEcc
Confidence 66788999999999999998753
No 26
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=55.36 E-value=33 Score=21.72 Aligned_cols=47 Identities=15% Similarity=0.093 Sum_probs=33.3
Q ss_pred ccEEEEEEeeCcccc----eecCCeEEEEEEEEEcC----CC-CccceEEEEEEEE
Q psy13876 11 GKHWILGLLRYWQNP----TMLQNYCILHGLFVCSS----PG-LLSDTYIEAQRIQ 57 (118)
Q Consensus 11 Pr~i~v~l~~dLvd~----~~pGd~V~v~Gi~~~~~----~~-~~~~~yl~a~~I~ 57 (118)
+..+.|.+-+.+.+. ++.||.|.|.|-++.++ .| ..+.+-+.|..|.
T Consensus 52 t~fi~vv~wgk~AE~~~~yl~KG~~V~VeGrL~~r~y~~kdG~kr~~tEVva~~i~ 107 (108)
T 3koj_A 52 PARLKVVGWGAVAQELQDRCRLNDEVVLEGRLRINSLLKPDGNREKQTELTVTRVH 107 (108)
T ss_dssp CEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEC--------CCEEEEEEEEEE
T ss_pred cEEEEEEEEhHHHHHHHHhCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEEEEE
Confidence 457889888887754 68899999999998773 23 4555666666553
No 27
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=54.75 E-value=27 Score=25.34 Aligned_cols=52 Identities=17% Similarity=0.120 Sum_probs=39.4
Q ss_pred ccEEEEEEeeCccc---ceecCCeEEEEEEEEEcC----CC-CccceEEEEEEEEEcccc
Q psy13876 11 GKHWILGLLRYWQN---PTMLQNYCILHGLFVCSS----PG-LLSDTYIEAQRIQCLSKA 62 (118)
Q Consensus 11 Pr~i~v~l~~dLvd---~~~pGd~V~v~Gi~~~~~----~~-~~~~~yl~a~~I~~~~~~ 62 (118)
+-.+.|.+-+.+.+ .++.|+.|.|.|-++... .| ..+.+.+.|.+|+-....
T Consensus 171 t~~~~v~~wg~~Ae~~~~l~KG~~V~V~G~l~~~~~~~~dG~~~~~~ev~a~~i~~l~~~ 230 (264)
T 2fxq_A 171 THFLEVQAWRELAEWASELRKGDGLLVIGRLVNDSWTSSSGERRFQTRVEALRLERPTRG 230 (264)
T ss_dssp EEEEEEEEEHHHHHHHTTCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEECCCC-
T ss_pred cEEEEEEEEChHHHHhhhcCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEECccc
Confidence 45789998887655 679999999999998763 34 355677888899877643
No 28
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=54.63 E-value=32 Score=24.36 Aligned_cols=49 Identities=10% Similarity=0.020 Sum_probs=35.8
Q ss_pred CccEEEEEEeeCccc----ceecCCeEEEEEEEEEcC----CC-CccceEEEEEEEEE
Q psy13876 10 VGKHWILGLLRYWQN----PTMLQNYCILHGLFVCSS----PG-LLSDTYIEAQRIQC 58 (118)
Q Consensus 10 ~Pr~i~v~l~~dLvd----~~~pGd~V~v~Gi~~~~~----~~-~~~~~yl~a~~I~~ 58 (118)
-+..+.|.+-+.+.+ .++.|+.|.|.|-++.+. .+ ..+.+-|.|..|..
T Consensus 51 ~T~wi~VvawgklAE~v~~~L~KG~~V~VeGrL~~rswedkdG~kr~~~eVvA~~Ig~ 108 (199)
T 3eiv_A 51 ESLFLTCSVWRQAAENVAESLQRGMRVIVQGRLKQRSYEDREGVKRTVYELDVDEVGA 108 (199)
T ss_dssp CCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEC--------CCEEEEEEEEEEE
T ss_pred ccEEEEEEEEhHHHHHHHHhcCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEec
Confidence 456789999888764 478999999999998773 23 45666677777754
No 29
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=54.35 E-value=31 Score=21.99 Aligned_cols=52 Identities=8% Similarity=-0.103 Sum_probs=35.8
Q ss_pred CccEEEEEEee-Ccc----cceecCCeEEEEEEEEEc----C--CC-CccceEEEEE----EEEEccc
Q psy13876 10 VGKHWILGLLR-YWQ----NPTMLQNYCILHGLFVCS----S--PG-LLSDTYIEAQ----RIQCLSK 61 (118)
Q Consensus 10 ~Pr~i~v~l~~-dLv----d~~~pGd~V~v~Gi~~~~----~--~~-~~~~~yl~a~----~I~~~~~ 61 (118)
-+..+.|.+-+ .+. ..++.|+.|.|.|-++.. + .| ..+.+-+.|. .++-++.
T Consensus 52 ~t~~~~v~~wg~~~Ae~~~~~l~KG~~V~V~G~L~~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~l~~ 119 (124)
T 3ulp_A 52 KTDWHRIVVYDQNIVDLIDKYLRKGRRVYVQGSLHTRKWHTNDMNSQPKQITEIILSYNKGDLIFLDD 119 (124)
T ss_dssp EEEEEEEEECCHHHHHHHHHHCCTTCEEEEEEEEEEEEECC----CCCEEEEEEEECTTTCEEEECC-
T ss_pred ccEEEEEEEEEchHHHHHHhhcCCCCEEEEEEEEEeEEEeCCCCCCCEEEEEEEEEEcCCCcEEEecC
Confidence 35678899988 554 358899999999999866 2 23 3455667775 6666654
No 30
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=54.31 E-value=10 Score=24.02 Aligned_cols=26 Identities=15% Similarity=0.074 Sum_probs=21.1
Q ss_pred EEEEeeCcccceecCCeEEEEEEEEE
Q psy13876 15 ILGLLRYWQNPTMLQNYCILHGLFVC 40 (118)
Q Consensus 15 ~v~l~~dLvd~~~pGd~V~v~Gi~~~ 40 (118)
.+.|.+-..-.++|||+|.|..--..
T Consensus 44 ~I~lNGAAArl~~~GD~vII~aY~~~ 69 (96)
T 1vc3_B 44 VIGINGAAAHLVKPGDLVILVAYGVF 69 (96)
T ss_dssp CEEEEGGGGGTCCTTCEEEEEEEEEE
T ss_pred eEEEchHHHccCCCCCEEEEEECccC
Confidence 35678889999999999999876443
No 31
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=54.05 E-value=12 Score=23.73 Aligned_cols=28 Identities=4% Similarity=-0.121 Sum_probs=22.3
Q ss_pred EEEEEEeeCcccceecCCeEEEEEEEEE
Q psy13876 13 HWILGLLRYWQNPTMLQNYCILHGLFVC 40 (118)
Q Consensus 13 ~i~v~l~~dLvd~~~pGd~V~v~Gi~~~ 40 (118)
|=.+.|.+-..-.++|||+|.|..--..
T Consensus 40 SG~I~lNGAAArl~~~GD~vII~aY~~~ 67 (97)
T 1uhe_A 40 RGEICVNGAAARKVAIGDVVIILAYASM 67 (97)
T ss_dssp TTCEEEEGGGGGGCCTTCEEEEEEEEEE
T ss_pred CCeEEEchHHHccCCCCCEEEEEECccC
Confidence 3456788999999999999999876443
No 32
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=53.78 E-value=5.6 Score=25.67 Aligned_cols=39 Identities=15% Similarity=0.098 Sum_probs=29.7
Q ss_pred cEEEEEEeeCcccceecCCeEEEEEEEEEcCCCCccceEEEEEEEEEcc
Q psy13876 12 KHWILGLLRYWQNPTMLQNYCILHGLFVCSSPGLLSDTYIEAQRIQCLS 60 (118)
Q Consensus 12 r~i~v~l~~dLvd~~~pGd~V~v~Gi~~~~~~~~~~~~yl~a~~I~~~~ 60 (118)
+++++.+.+.--.++++||.+.++ + .....++..|....
T Consensus 20 KtiEiRlnd~k~~~ikvGD~I~f~--------~--~~l~~~V~~v~~Y~ 58 (109)
T 2z0t_A 20 KKIEGRLYDEKRRQIKPGDIIIFE--------G--GKLKVKVKGIRVYS 58 (109)
T ss_dssp CCEEEEECCTTGGGCCTTCEEEEG--------G--GTEEEEEEEEEEES
T ss_pred CEEEEEecchhhhcCCCCCEEEEC--------C--CEEEEEEEEEEccC
Confidence 689999999999999999999992 1 24566666665543
No 33
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=53.53 E-value=29 Score=25.96 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=38.0
Q ss_pred ccEEEEEEeeCccc---ceecCCeEEEEEEEEEcC----CC-CccceEEEEEEEEEcccc
Q psy13876 11 GKHWILGLLRYWQN---PTMLQNYCILHGLFVCSS----PG-LLSDTYIEAQRIQCLSKA 62 (118)
Q Consensus 11 Pr~i~v~l~~dLvd---~~~pGd~V~v~Gi~~~~~----~~-~~~~~yl~a~~I~~~~~~ 62 (118)
+..+.|.+-+.+.+ +++.|+.|.|.|-++... .| ..+.+-|.|.+|+.+...
T Consensus 175 t~~i~vvawg~~Ae~~~~l~KG~~V~V~GrL~~~~y~dkdG~~r~~~ev~a~~i~~l~~k 234 (301)
T 1se8_A 175 VHYIDATLWRDLAENMKELRKGDPVMIMGRLVNEGWTDKDGNKRNSTRVEATRVEALARG 234 (301)
T ss_dssp EEEEEEEEETHHHHHHTTCCTTCEEEEEEEEEEEECC------CEEEEEEEEEEEECCC-
T ss_pred cEEEEEEECCHHHHHHHhcCCCCEEEEEEEEeeeeEECCCCcEEEEEEEEEEEEEEeccC
Confidence 45788888887654 379999999999998762 23 456677899999887653
No 34
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=53.34 E-value=48 Score=25.88 Aligned_cols=45 Identities=16% Similarity=0.045 Sum_probs=31.9
Q ss_pred EEEEEeeCccccee-cCCeEEEEEEEEEcCCCCccceEEEEEEEEEcccc
Q psy13876 14 WILGLLRYWQNPTM-LQNYCILHGLFVCSSPGLLSDTYIEAQRIQCLSKA 62 (118)
Q Consensus 14 i~v~l~~dLvd~~~-pGd~V~v~Gi~~~~~~~~~~~~yl~a~~I~~~~~~ 62 (118)
+.|.+.. .++. .||-|.|+|++...+.+. .+.-|.|..++..++.
T Consensus 43 iQ~v~~~---~~l~~~~~~v~v~G~v~~~~~~~-~~~el~~~~~~vl~~~ 88 (422)
T 1n9w_A 43 VQVVTGG---LKLPLPESALRVRGLVVENAKAP-GGLEVQAKEVEVLSPA 88 (422)
T ss_dssp EEEEEES---CCCCCTTCEEEEEEEEEECTTST-TSEEEEEEEEEEEECC
T ss_pred EEEEEEc---cccCCCCCEEEEEEEEEecCCCC-ccEEEEEeEEEEeccC
Confidence 5666654 6788 899999999998876432 3556777777766543
No 35
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=53.12 E-value=39 Score=21.09 Aligned_cols=42 Identities=10% Similarity=-0.020 Sum_probs=30.2
Q ss_pred EEEEEEeeCccc-ceecCCeEEEEEEEEEcCCCCccceEEEEEE
Q psy13876 13 HWILGLLRYWQN-PTMLQNYCILHGLFVCSSPGLLSDTYIEAQR 55 (118)
Q Consensus 13 ~i~v~l~~dLvd-~~~pGd~V~v~Gi~~~~~~~~~~~~yl~a~~ 55 (118)
++.+.|=++.++ .++|||.|.|.|-.+....|. +++++.-.+
T Consensus 53 ~IrvtlW~~~a~~~l~~Gdvv~i~g~vk~~~~g~-~eL~~g~~~ 95 (105)
T 3dm3_A 53 SIRVTLWDNLTDIDVGRGDYVRVRGYIREGYYGG-LECTANYVE 95 (105)
T ss_dssp EEEEEEEGGGGGSCCCTTCEEEEEEEEEECTTSS-EEEEEEEEE
T ss_pred cEEEEEECcccccccCCCCEEEEEEEEEEccCCC-EEEEeCCce
Confidence 578888888888 799999999988777665332 355554333
No 36
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=52.68 E-value=13 Score=24.29 Aligned_cols=25 Identities=4% Similarity=-0.106 Sum_probs=20.7
Q ss_pred EEEEeeCcccceecCCeEEEEEEEE
Q psy13876 15 ILGLLRYWQNPTMLQNYCILHGLFV 39 (118)
Q Consensus 15 ~v~l~~dLvd~~~pGd~V~v~Gi~~ 39 (118)
.+.|.+...-.++|||+|.|..--.
T Consensus 71 ~I~lNGAAAr~~~~GD~vII~ay~~ 95 (114)
T 3oug_A 71 TIALNGPAARRCEIGDQLFIISYTQ 95 (114)
T ss_dssp CEEEEGGGGGGCCTTCEEEEEEEEE
T ss_pred EEEeCCHHHhccCCCCEEEEEECCc
Confidence 4678889999999999999986543
No 37
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=51.22 E-value=46 Score=26.78 Aligned_cols=47 Identities=15% Similarity=-0.065 Sum_probs=34.8
Q ss_pred EEEEEEeeCcc----------cceecCCeEEEEEEEEEcCCCCccceEEEEEEEEEcccc
Q psy13876 13 HWILGLLRYWQ----------NPTMLQNYCILHGLFVCSSPGLLSDTYIEAQRIQCLSKA 62 (118)
Q Consensus 13 ~i~v~l~~dLv----------d~~~pGd~V~v~Gi~~~~~~~~~~~~yl~a~~I~~~~~~ 62 (118)
.+.|++..+.+ ..+..||.|.|+|++...+.| +.-|.|..++...+.
T Consensus 85 ~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~~g---e~ei~~~~i~~l~~~ 141 (521)
T 3bju_A 85 KLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKG---ELSIIPYEITLLSPC 141 (521)
T ss_dssp EEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEECTTC---CEEEEEEEEEEEECC
T ss_pred EEEEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEecCCC---CEEEEEeEEEEeecC
Confidence 57888865533 357899999999999877654 566777778777653
No 38
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=49.53 E-value=37 Score=27.19 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=34.8
Q ss_pred EEEEEEeeCc--------ccceecCCeEEEEEEEEEcCCCCccceEEEEEEEEEcccc
Q psy13876 13 HWILGLLRYW--------QNPTMLQNYCILHGLFVCSSPGLLSDTYIEAQRIQCLSKA 62 (118)
Q Consensus 13 ~i~v~l~~dL--------vd~~~pGd~V~v~Gi~~~~~~~~~~~~yl~a~~I~~~~~~ 62 (118)
.+.|++..+. ..++..||.|.|+|++...+.| +.-|.|..++...+.
T Consensus 85 ~iQvv~~~~~~~~~~~~~~~~l~~g~~v~V~G~v~~~~~g---e~ei~~~~i~vl~~~ 139 (493)
T 3a74_A 85 QIQIYVRQDDVGEQQYELFKISDLGDIVGVRGTMFKTKVG---ELSIKVSSYEFLTKA 139 (493)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHCCTTCEEEEEEEEEECTTC---CEEEEEEEEEEEECC
T ss_pred eEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEeCCCC---cEEEEEEEEEEcccc
Confidence 4777776542 3468999999999999887654 566777778777654
No 39
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=49.41 E-value=38 Score=27.49 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=34.6
Q ss_pred EEEEEEeeCcc--------cceecCCeEEEEEEEEEcCCCCccceEEEEEEEEEcccc
Q psy13876 13 HWILGLLRYWQ--------NPTMLQNYCILHGLFVCSSPGLLSDTYIEAQRIQCLSKA 62 (118)
Q Consensus 13 ~i~v~l~~dLv--------d~~~pGd~V~v~Gi~~~~~~~~~~~~yl~a~~I~~~~~~ 62 (118)
.+.|++..+.+ .++..||.|.|+|++...+.| +.-|.|..++...+.
T Consensus 115 ~iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~~g---elel~~~~i~vLs~a 169 (529)
T 4ex5_A 115 QIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFRTNKG---ELSVKCTQLRLLAKA 169 (529)
T ss_dssp EEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECTTS---CEEEEEEEEEEEECC
T ss_pred eEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEEcCCC---cEEEEEEEEEEEecC
Confidence 57788876543 468899999999999877654 456777777766543
No 40
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=49.02 E-value=75 Score=24.94 Aligned_cols=49 Identities=10% Similarity=0.009 Sum_probs=34.2
Q ss_pred EEEEEEeeCc--------ccceecCCeEEEEEEEEEcCCCCccceEEEEEEEEEcccc
Q psy13876 13 HWILGLLRYW--------QNPTMLQNYCILHGLFVCSSPGLLSDTYIEAQRIQCLSKA 62 (118)
Q Consensus 13 ~i~v~l~~dL--------vd~~~pGd~V~v~Gi~~~~~~~~~~~~yl~a~~I~~~~~~ 62 (118)
.+.|.+..+. +.++..||-|.|+|++...+.. ..+.-|.|..++..++.
T Consensus 45 ~iQ~v~~~~~~~~~~~~~~~~l~~~~~V~V~G~v~~~~~~-~~~~el~~~~i~vl~~~ 101 (438)
T 3nem_A 45 IVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTPKA-KLGFEILPEKIVVLNRA 101 (438)
T ss_dssp EEEEEEETTTSCHHHHHHGGGCCTTCEEEEEEEEEECTTS-TTSEEEEEEEEEEEECB
T ss_pred eEEEEEeCCcCCHHHHHHHhcCCCCCEEEEEEEEEeCCCC-CCcEEEEEEEEEEEecC
Confidence 3778887665 4579999999999999877531 12455666677666543
No 41
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=48.29 E-value=44 Score=22.70 Aligned_cols=46 Identities=15% Similarity=0.061 Sum_probs=33.6
Q ss_pred ccEEEEEEeeCcc----cceecCCeEEEEEEEEEcC----CC-CccceEEEEEEE
Q psy13876 11 GKHWILGLLRYWQ----NPTMLQNYCILHGLFVCSS----PG-LLSDTYIEAQRI 56 (118)
Q Consensus 11 Pr~i~v~l~~dLv----d~~~pGd~V~v~Gi~~~~~----~~-~~~~~yl~a~~I 56 (118)
+-.+.|.+-+.+. ..++.|++|.|.|-++.+. .| ..+.+.|.|..|
T Consensus 52 t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL~~~~~~dkdG~~r~~~ev~a~~v 106 (168)
T 3afp_A 52 ALFLRCNIWREAAENVAESLTRGARVIVTGRLKQRSFETREGEKRTVVEVEVDEI 106 (168)
T ss_dssp CEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEEEC-CCSCCEEEEEEEEEEE
T ss_pred cEEEEEEEehHHHHHHHHhCCCCCEEEEEEEEEeeeEECCCCcEEEEEEEEEEEe
Confidence 5678999888865 4678899999999998763 23 345556766654
No 42
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=47.78 E-value=23 Score=27.88 Aligned_cols=41 Identities=10% Similarity=-0.094 Sum_probs=30.2
Q ss_pred EEEEEEee------CcccceecCCeEEEEEEEEEcCCCCccceEEEEEEEEEc
Q psy13876 13 HWILGLLR------YWQNPTMLQNYCILHGLFVCSSPGLLSDTYIEAQRIQCL 59 (118)
Q Consensus 13 ~i~v~l~~------dLvd~~~pGd~V~v~Gi~~~~~~~~~~~~yl~a~~I~~~ 59 (118)
.++|...+ +++.+..|||+|++.|-++. | +.+++-..|...
T Consensus 315 ~i~c~ayeptk~fr~~vr~L~~GD~V~v~G~v~~---g---tLnvEk~~v~~l 361 (402)
T 3au7_A 315 SVKCAAFEPTKQFRNVIRLLRKGDVVEVYGSMKK---D---TINLEKIQIVEL 361 (402)
T ss_dssp EEEEEECGGGTTHHHHHTTCCTTCEEEEEEEEET---T---EEEEEEEEEEEC
T ss_pred EEEEEEEccchHHHHHHhcCCCCCEEEEEEeecC---C---EEEEEEEEEccc
Confidence 45555555 66788899999999999773 3 677776666655
No 43
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=46.67 E-value=33 Score=21.38 Aligned_cols=28 Identities=11% Similarity=-0.119 Sum_probs=25.7
Q ss_pred cEEEEEEeeCcccceecCCeEEEEEEEE
Q psy13876 12 KHWILGLLRYWQNPTMLQNYCILHGLFV 39 (118)
Q Consensus 12 r~i~v~l~~dLvd~~~pGd~V~v~Gi~~ 39 (118)
.++.|...+-|-|.++.|.-|.++|.|.
T Consensus 43 ~~v~V~Y~GilPDlFrEGqgVV~~G~l~ 70 (94)
T 2kct_A 43 KTVWVLYKGAVPDTFKPGVEVIIEGGLA 70 (94)
T ss_dssp CEEEEEEESCCCTTCCTTCEEEEEEEEC
T ss_pred cEEEEEECCCCCccccCCCeEEEEEEEe
Confidence 5788999999999999999999999986
No 44
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C
Probab=46.26 E-value=35 Score=21.86 Aligned_cols=31 Identities=6% Similarity=0.100 Sum_probs=22.7
Q ss_pred cEEEEEEeeCcc------cceecCCeEEEEEEEEEcC
Q psy13876 12 KHWILGLLRYWQ------NPTMLQNYCILHGLFVCSS 42 (118)
Q Consensus 12 r~i~v~l~~dLv------d~~~pGd~V~v~Gi~~~~~ 42 (118)
.+++|.+.+|.. +.++-|+.|.|+|.+|..+
T Consensus 41 e~~tVRC~Gd~~~~~~lk~~lk~g~~v~V~GrLRm~p 77 (105)
T 4dka_C 41 EFIVIRCMGDNFPASLLKDQVKLGSRVLVQGTLRMNR 77 (105)
T ss_dssp EEEEEEEECC---------CCCTTCEEEEEEEEECCC
T ss_pred cEEEEEEcCccchHHHHHHHHhCCCEEEEEeEEEeee
Confidence 356677766654 6789999999999999775
No 45
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=43.24 E-value=68 Score=23.10 Aligned_cols=52 Identities=15% Similarity=0.036 Sum_probs=36.7
Q ss_pred ccEEEEEEeeCccc----ceecCCeEEEEEEEEEcC---CC-CccceEEEEEEEEEcccc
Q psy13876 11 GKHWILGLLRYWQN----PTMLQNYCILHGLFVCSS---PG-LLSDTYIEAQRIQCLSKA 62 (118)
Q Consensus 11 Pr~i~v~l~~dLvd----~~~pGd~V~v~Gi~~~~~---~~-~~~~~yl~a~~I~~~~~~ 62 (118)
+-.+.|.+-+.+.+ .++.|+.|.|.|-++.+. .| ..+.+.+.|.+|+.+...
T Consensus 51 t~~~~v~~~g~~Ae~~~~~l~KG~~V~V~G~L~~~~~~~dG~~r~~~ev~a~~i~~l~~~ 110 (264)
T 2fxq_A 51 PWYHRVRLLGRQAEMWGDLLEKGQLIFVEGRLEYRQWEKDGEKKSEVQVRAEFIDPLEGR 110 (264)
T ss_dssp EEEEEEEEETHHHHHHTTTCCTTCEEEEEEEEEEC---------CCEEEEEEEEEECCCC
T ss_pred cEEEEEEEEchHHHHHHHhCCCCCEEEEEEEEEeeeEEeCCEEEEEEEEEEEEEEECcCC
Confidence 34678888877655 467999999999998763 23 455677888899887654
No 46
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=42.60 E-value=37 Score=21.20 Aligned_cols=32 Identities=6% Similarity=-0.106 Sum_probs=23.3
Q ss_pred EEEEEEee-CcccceecCCeEEEEEEEEEcCCC
Q psy13876 13 HWILGLLR-YWQNPTMLQNYCILHGLFVCSSPG 44 (118)
Q Consensus 13 ~i~v~l~~-dLvd~~~pGd~V~v~Gi~~~~~~~ 44 (118)
+|.+.+-+ +..+.++|||.|.|.+.+....+|
T Consensus 47 ~I~~t~W~~~~~~~~~~G~~V~i~n~~v~~~~G 79 (109)
T 2kbn_A 47 IIKFTIWKNAELPLLEQGESYLLRSVVVGEYND 79 (109)
T ss_dssp CEEEEEEGGGCCCCCCTTCEEEEEEEEEEEETT
T ss_pred eEEEEEECcccccccCCCCEEEEEEEEEEEECC
Confidence 46666666 678899999999999665544333
No 47
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=41.80 E-value=22 Score=23.91 Aligned_cols=23 Identities=13% Similarity=0.119 Sum_probs=19.7
Q ss_pred EEEEeeCcccceecCCeEEEEEE
Q psy13876 15 ILGLLRYWQNPTMLQNYCILHGL 37 (118)
Q Consensus 15 ~v~l~~dLvd~~~pGd~V~v~Gi 37 (118)
.+.|.+...-.++|||+|+|..-
T Consensus 68 ~I~lNGAAArl~~~GD~vII~aY 90 (139)
T 2c45_A 68 VIGINGAAAHLVHPGDLVILIAY 90 (139)
T ss_dssp CEEEESSTTTTSCTTCEEEEEEC
T ss_pred EEEEchHHHccCCCCCEEEEEEC
Confidence 36678889999999999999875
No 48
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=41.70 E-value=60 Score=24.16 Aligned_cols=52 Identities=13% Similarity=0.070 Sum_probs=37.5
Q ss_pred ccEEEEEEeeCccc----c-eecCCeEEEEEEEEEcC----CC-CccceEEEEEEEEEcccc
Q psy13876 11 GKHWILGLLRYWQN----P-TMLQNYCILHGLFVCSS----PG-LLSDTYIEAQRIQCLSKA 62 (118)
Q Consensus 11 Pr~i~v~l~~dLvd----~-~~pGd~V~v~Gi~~~~~----~~-~~~~~yl~a~~I~~~~~~ 62 (118)
+-.+.|.+-+.+.+ . ++.|+.|.|.|-++... .| ..+.+.|.|.+|+.+...
T Consensus 51 t~~i~vv~~g~~Ae~~~~~~l~KG~~V~VeG~L~~r~~~dkdG~~r~~~ev~a~~i~~l~~~ 112 (301)
T 1se8_A 51 PWYHRVSILGKPAEWQAERNLKGGDAVVVEGTLEYRQWEAPEGGKRSAVNVKALRMEQLGTQ 112 (301)
T ss_dssp EEEEEEEEESHHHHHHHHTCCCTTCEEEEEEEEEEEEEC-----CEEEEEEEEEEEEECSSC
T ss_pred eEEEEEEEEcHHHHHHHhhCCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEeEEEEeecc
Confidence 34688888888764 3 68999999999998762 23 345566888888877643
No 49
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=41.53 E-value=75 Score=24.84 Aligned_cols=48 Identities=15% Similarity=0.089 Sum_probs=33.6
Q ss_pred EEEEEeeC-----cccceecCCeEEEEEEEEEcCCCCccceEEEEEEEEEcccc
Q psy13876 14 WILGLLRY-----WQNPTMLQNYCILHGLFVCSSPGLLSDTYIEAQRIQCLSKA 62 (118)
Q Consensus 14 i~v~l~~d-----Lvd~~~pGd~V~v~Gi~~~~~~~~~~~~yl~a~~I~~~~~~ 62 (118)
+.|.+..+ .+..+..||.|.|+|++...+.+. .+.-|.|..++..++.
T Consensus 46 iQ~v~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~~~~-~~~el~~~~~~vl~~~ 98 (429)
T 1wyd_A 46 GQVVVDKNSSAFGISQELTQESVIQVRGIVKADKRAP-RGIELHAEEITLLSKA 98 (429)
T ss_dssp EEEEECTTSTTHHHHTTCCTTCEEEEEEEEEECSSSG-GGEEEEEEEEEEEECC
T ss_pred EEEEEeCChHHHHHHHhCCCCCEEEEEEEEEecCCCC-ccEEEEEeEEEEeccC
Confidence 66766543 235689999999999998876432 3566777777776653
No 50
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=41.51 E-value=17 Score=22.20 Aligned_cols=26 Identities=0% Similarity=-0.187 Sum_probs=18.6
Q ss_pred cEEEEEEee-CcccceecCCeEEEEEE
Q psy13876 12 KHWILGLLR-YWQNPTMLQNYCILHGL 37 (118)
Q Consensus 12 r~i~v~l~~-dLvd~~~pGd~V~v~Gi 37 (118)
-+|+..+.+ -+.+.+++||+|.+.=.
T Consensus 47 MTM~F~v~~~~~l~~lk~Gd~V~F~~~ 73 (88)
T 2vb2_X 47 MTMRFTITPQTKMSEIKTGDKVAFNFV 73 (88)
T ss_dssp EEEEEECCTTCEECCCCTTCEEEEEEE
T ss_pred eEEEEEcCChhhhhcCCCCCEEEEEEE
Confidence 345555543 46789999999998754
No 51
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=41.45 E-value=75 Score=25.93 Aligned_cols=50 Identities=6% Similarity=-0.081 Sum_probs=34.7
Q ss_pred EEEEEEeeC------cccceecCCeEEEEEEEEEcCCC------CccceEEEEEEEEEcccc
Q psy13876 13 HWILGLLRY------WQNPTMLQNYCILHGLFVCSSPG------LLSDTYIEAQRIQCLSKA 62 (118)
Q Consensus 13 ~i~v~l~~d------Lvd~~~pGd~V~v~Gi~~~~~~~------~~~~~yl~a~~I~~~~~~ 62 (118)
.+.|++..+ .+..+..||-|.|+|++..++.+ ..-+.-|.|..++..++.
T Consensus 44 ~iQvv~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~~~~geiEl~~~~i~vl~~a 105 (585)
T 1c0a_A 44 IVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRA 105 (585)
T ss_dssp EEEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEECCTTTCCTTSTTTTEEEEEEEEEEEECC
T ss_pred eEEEEEeCCchHHHHHHhcCCCCCEEEEEeEEEccCcccccccCCCccEEEEEeEEEEEecc
Confidence 367777553 33578999999999999877432 234566777777777653
No 52
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=41.05 E-value=42 Score=21.12 Aligned_cols=29 Identities=7% Similarity=-0.123 Sum_probs=23.4
Q ss_pred EEEEEEeeCcccceecCCeEEEE-EEEEEc
Q psy13876 13 HWILGLLRYWQNPTMLQNYCILH-GLFVCS 41 (118)
Q Consensus 13 ~i~v~l~~dLvd~~~pGd~V~v~-Gi~~~~ 41 (118)
+|.+.+-++.++.+++||.|.|. |.....
T Consensus 50 ~I~~tlW~~~~~~~~~G~vv~i~~g~v~~~ 79 (119)
T 1o7i_A 50 RVKLTLWGKHAGSIKEGQVVKIENAWTTAF 79 (119)
T ss_dssp EEEEEEEGGGTTCCCTTCEEEEEEEEEEEE
T ss_pred EEEEEEECChhhcCCCCCEEEEEeEEEEEe
Confidence 47788888888999999999999 555543
No 53
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=40.89 E-value=41 Score=20.83 Aligned_cols=27 Identities=0% Similarity=-0.230 Sum_probs=20.5
Q ss_pred EEEEEEeeCccc---ceecCCeEEEEEEEE
Q psy13876 13 HWILGLLRYWQN---PTMLQNYCILHGLFV 39 (118)
Q Consensus 13 ~i~v~l~~dLvd---~~~pGd~V~v~Gi~~ 39 (118)
+|.+.+-++..+ .+++|+.|.|.|.+-
T Consensus 55 ~I~~t~w~~~~~~~~~l~~G~vv~i~g~~v 84 (115)
T 2k50_A 55 ELRAVFWTENIKLLKKFREGDVIRIKDVNI 84 (115)
T ss_dssp EEEEEEETTGGGGGGTCCTTSEEEEEEEEE
T ss_pred eEEEEEeCchhhhhhcCCCCCEEEEEeeEE
Confidence 566666666544 789999999999873
No 54
>2vqe_Q 30S ribosomal protein S17; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: b.40.4.5 PDB: 1gix_T* 1hnw_Q* 1hnx_Q* 1hnz_Q* 1hr0_Q 1ibk_Q* 1ibl_Q* 1ibm_Q 1jgo_T* 1jgp_T* 1jgq_T* 1ml5_T* 1xmo_Q* 1xmq_Q* 1xnq_Q* 1xnr_Q* 1yl4_T 2b64_Q* 2b9m_Q* 2b9o_Q* ...
Probab=40.44 E-value=32 Score=21.98 Aligned_cols=30 Identities=7% Similarity=-0.307 Sum_probs=21.3
Q ss_pred ccEEEEEEeeCcccceecCCeEEEEEEEEEcC
Q psy13876 11 GKHWILGLLRYWQNPTMLQNYCILHGLFVCSS 42 (118)
Q Consensus 11 Pr~i~v~l~~dLvd~~~pGd~V~v~Gi~~~~~ 42 (118)
.|+-.+..++.- +.|+.||.|.|.-. ++.+
T Consensus 37 kr~kk~~aHDe~-n~~k~GD~V~I~E~-RPlS 66 (105)
T 2vqe_Q 37 KRSKKYLAHDPE-EKYKLGDVVEIIES-RPIS 66 (105)
T ss_dssp EEEEEEEEECTT-CCCCTTCEEEEEEE-EEEE
T ss_pred ecceEEEEECCC-CCCCCCCEEEEEEc-ccCC
Confidence 344455566655 78999999999877 5554
No 55
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=38.16 E-value=66 Score=25.17 Aligned_cols=48 Identities=4% Similarity=0.072 Sum_probs=33.8
Q ss_pred EEEEEeeCc--------ccceecCCeEEEEEEEEEcCCCCccceEEEEEEEEEcccc
Q psy13876 14 WILGLLRYW--------QNPTMLQNYCILHGLFVCSSPGLLSDTYIEAQRIQCLSKA 62 (118)
Q Consensus 14 i~v~l~~dL--------vd~~~pGd~V~v~Gi~~~~~~~~~~~~yl~a~~I~~~~~~ 62 (118)
+.|.+..+. +..+..||.|.|+|++...+.+ ..+.-|.|..++..++.
T Consensus 46 iQ~v~~~~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~~~-~~~~el~~~~~~vl~~~ 101 (434)
T 1x54_A 46 VQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVKADERA-PGGAEVHVEKLEVIQAV 101 (434)
T ss_dssp EEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECTTS-GGGEEEEEEEEEEEECC
T ss_pred EEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEecCCC-CccEEEEEeEEEEeecC
Confidence 677775432 3568999999999999887643 23566777777776653
No 56
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=37.24 E-value=9.3 Score=22.73 Aligned_cols=17 Identities=0% Similarity=-0.125 Sum_probs=14.6
Q ss_pred eCcccceecCCeEEEEE
Q psy13876 20 RYWQNPTMLQNYCILHG 36 (118)
Q Consensus 20 ~dLvd~~~pGd~V~v~G 36 (118)
.+|...+++||+|.|.+
T Consensus 12 ~~LrK~F~~GDHVkVi~ 28 (69)
T 2do3_A 12 QELRKYFKMGDHVKVIA 28 (69)
T ss_dssp CCCCSSCCTTCEEEESS
T ss_pred HHceeeccCCCeEEEec
Confidence 67888999999999864
No 57
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=36.88 E-value=19 Score=24.31 Aligned_cols=26 Identities=8% Similarity=0.082 Sum_probs=20.9
Q ss_pred EEEEeeCcccceecCCeEEEEEEEEE
Q psy13876 15 ILGLLRYWQNPTMLQNYCILHGLFVC 40 (118)
Q Consensus 15 ~v~l~~dLvd~~~pGd~V~v~Gi~~~ 40 (118)
.+.|.+...-.++|||+|.|..--..
T Consensus 85 ~I~lNGAAArl~~~GD~VII~sYa~~ 110 (143)
T 1pqh_A 85 IISVNGAAAHCASVGDIVIIASFVTM 110 (143)
T ss_dssp CEECCGGGGGTCCTTCEEEEEEEEEE
T ss_pred eEEechHHHccCCCCCEEEEEECccC
Confidence 46678888899999999999876443
No 58
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=36.37 E-value=20 Score=20.07 Aligned_cols=25 Identities=12% Similarity=-0.281 Sum_probs=18.4
Q ss_pred ccEEEEEEeeCccc-------ceecCCeEEEE
Q psy13876 11 GKHWILGLLRYWQN-------PTMLQNYCILH 35 (118)
Q Consensus 11 Pr~i~v~l~~dLvd-------~~~pGd~V~v~ 35 (118)
|+.+-|.+.+..+. .++.||+|.|.
T Consensus 27 ~~~v~vavN~~~v~~~~~~~~~L~dgD~v~i~ 58 (64)
T 2cu3_A 27 LKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVV 58 (64)
T ss_dssp GGGEEEEETTEEEEGGGCCCCCCCTTCEEEEE
T ss_pred CCcEEEEECCEECCccccCCcCCCCCCEEEEE
Confidence 45566777666665 58899999885
No 59
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=35.51 E-value=1.3e+02 Score=23.89 Aligned_cols=50 Identities=12% Similarity=0.148 Sum_probs=34.3
Q ss_pred EEEEEEeeC-----------cccceecCCeEEEEEEEEEcCCC----CccceEEEEEEEEEcccc
Q psy13876 13 HWILGLLRY-----------WQNPTMLQNYCILHGLFVCSSPG----LLSDTYIEAQRIQCLSKA 62 (118)
Q Consensus 13 ~i~v~l~~d-----------Lvd~~~pGd~V~v~Gi~~~~~~~----~~~~~yl~a~~I~~~~~~ 62 (118)
.+.|++..+ .+..+..||.|.|+|++...+.+ ..-+.-|.|..++..++.
T Consensus 66 ~iQvv~~~~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a 130 (487)
T 1eov_A 66 LIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISET 130 (487)
T ss_dssp EEEEEEECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECC
T ss_pred cEEEEEeccccccccHHHHHHHhcCCCCCEEEEEEEEEeCCCCCcCCCCCcEEEEEEEEEEeecc
Confidence 577777644 12468999999999999877531 223456777777776643
No 60
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=34.01 E-value=22 Score=21.27 Aligned_cols=16 Identities=19% Similarity=0.160 Sum_probs=12.6
Q ss_pred eCcccceecCCeEEEE
Q psy13876 20 RYWQNPTMLQNYCILH 35 (118)
Q Consensus 20 ~dLvd~~~pGd~V~v~ 35 (118)
=+|++.+++||.|.|.
T Consensus 30 l~Lv~~~~vGD~VLVH 45 (75)
T 2z1c_A 30 LDLMPDTKPGDWVIVH 45 (75)
T ss_dssp CTTSTTCCTTCEEEEE
T ss_pred EEEeCCCCCCCEEEEe
Confidence 3667778999999875
No 61
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=33.50 E-value=1.4e+02 Score=23.49 Aligned_cols=50 Identities=2% Similarity=-0.086 Sum_probs=33.7
Q ss_pred EEEEEEee-Cc-----ccceecCCeEEEEEEEEEcCCCC-------ccceEEEEEEEEEcccc
Q psy13876 13 HWILGLLR-YW-----QNPTMLQNYCILHGLFVCSSPGL-------LSDTYIEAQRIQCLSKA 62 (118)
Q Consensus 13 ~i~v~l~~-dL-----vd~~~pGd~V~v~Gi~~~~~~~~-------~~~~yl~a~~I~~~~~~ 62 (118)
.+.|++.. ++ ...+..||.|.|+|++...+.+. .-+.-|.|..++...+.
T Consensus 60 ~iQvv~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a 122 (456)
T 3m4p_A 60 YCQCVIFGKELCEPEKVKLLTRECSLEITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGES 122 (456)
T ss_dssp EEEEEEESTTTTCHHHHTTCCTTCEEEEEEEEECCCSSSCCCSCTTBCSSEEEEEEEEEEECC
T ss_pred cEEEEEecccchhhHHhhcCCCccEEEEEeEEEecCCcccCcccCCCCcEEEEEeEEEEEecC
Confidence 47788876 33 24688999999999998664321 13456777777766543
No 62
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=33.21 E-value=89 Score=21.21 Aligned_cols=53 Identities=9% Similarity=-0.001 Sum_probs=35.0
Q ss_pred CccEEEEEEeeC-ccc----ceecCCeEEEEEEEEEcC----CC-CccceEEEE----EEEEEcccc
Q psy13876 10 VGKHWILGLLRY-WQN----PTMLQNYCILHGLFVCSS----PG-LLSDTYIEA----QRIQCLSKA 62 (118)
Q Consensus 10 ~Pr~i~v~l~~d-Lvd----~~~pGd~V~v~Gi~~~~~----~~-~~~~~yl~a----~~I~~~~~~ 62 (118)
-+..+.|.+-+. +.+ .++.|+.|.|.|-++.+. .| ..+.+-+.| ..|+-+...
T Consensus 69 ~t~~i~vv~wg~~lAe~~~~~l~KG~~V~VeGrL~~r~~~dkdG~~r~~~eIva~~~~~~i~~L~~k 135 (169)
T 3lgj_A 69 KTEWHSVVVFNPHFAKIALQYLHKGSKVYIEGKLQTRKWQDKNGHDRYTTEIVLPQYKGELHLLDAK 135 (169)
T ss_dssp CEEEEEEEECCHHHHHHHHHHCCTTCEEEEEEEEEEECC--------CEEEEEECTTCCEEEEECC-
T ss_pred ccEEEEEEEeCHHHHHHHHHhCCCCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEeccCcEEEccCC
Confidence 356788999888 654 377899999999998773 23 344555654 467666543
No 63
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=32.83 E-value=30 Score=21.05 Aligned_cols=28 Identities=0% Similarity=-0.225 Sum_probs=20.1
Q ss_pred CCCccEEEEEEeeCcc---cceecCCeEEEE
Q psy13876 8 SMVGKHWILGLLRYWQ---NPTMLQNYCILH 35 (118)
Q Consensus 8 g~~Pr~i~v~l~~dLv---d~~~pGd~V~v~ 35 (118)
|.+++.+.|.+.+..+ ..+++||+|.|.
T Consensus 62 g~~~~~v~v~VNg~~v~~~~~L~dGDeV~i~ 92 (98)
T 1vjk_A 62 YDEDADVNIAVNGRYVSWDEELKDGDVVGVF 92 (98)
T ss_dssp SCTTSSBEEEETTBCCCTTCBCCTTCEEEEE
T ss_pred cccCCcEEEEECCEECCCCCCCCCCCEEEEE
Confidence 4455667777777665 478899999874
No 64
>3j20_R 30S ribosomal protein S17P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.27 E-value=50 Score=21.33 Aligned_cols=21 Identities=0% Similarity=-0.244 Sum_probs=15.2
Q ss_pred EEeeCcccceecCCeEEEEEE
Q psy13876 17 GLLRYWQNPTMLQNYCILHGL 37 (118)
Q Consensus 17 ~l~~dLvd~~~pGd~V~v~Gi 37 (118)
.++++-.+.|+.||.|+|.-.
T Consensus 71 ~aHDe~~n~~~vGD~V~I~E~ 91 (113)
T 3j20_R 71 HAHNPPCINAKVGDKVLIAET 91 (113)
T ss_dssp EEECCTTSCCCTTSEEEEEEC
T ss_pred EEECCCCCCCCCCCEEEEEec
Confidence 344443668999999998764
No 65
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=31.54 E-value=1.1e+02 Score=20.05 Aligned_cols=49 Identities=12% Similarity=0.176 Sum_probs=34.6
Q ss_pred EEEEEEeeCcccc----eecCCeEEEEEEEEEcC-CCCccceEEEEEEEEEccc
Q psy13876 13 HWILGLLRYWQNP----TMLQNYCILHGLFVCSS-PGLLSDTYIEAQRIQCLSK 61 (118)
Q Consensus 13 ~i~v~l~~dLvd~----~~pGd~V~v~Gi~~~~~-~~~~~~~yl~a~~I~~~~~ 61 (118)
.+.|.+-+.+.+. ++.|+.|.|.|-++.++ +.......+.|.+|+-.+.
T Consensus 66 ~i~vv~wGk~AE~~~~yl~KGs~V~VeGrL~tr~~k~G~kr~~~~a~~i~~l~~ 119 (134)
T 1v1q_A 66 QMPVIVSGHENQAITHSITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELIDS 119 (134)
T ss_dssp EEEEEEESTGGGGGGTTCCTTCEEEEEEEEEEECTTTTSCEEEEEEEEEEETTS
T ss_pred EEEEEEEhHHHHHHHHhcCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEECcC
Confidence 4788888887765 57799999999998774 2222233357778877754
No 66
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=31.47 E-value=71 Score=20.63 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=36.8
Q ss_pred CccEEEEEEeeCccc----ceecCCeEEEEEEEEEcC---CC-CccceEEEEEEEEEc
Q psy13876 10 VGKHWILGLLRYWQN----PTMLQNYCILHGLFVCSS---PG-LLSDTYIEAQRIQCL 59 (118)
Q Consensus 10 ~Pr~i~v~l~~dLvd----~~~pGd~V~v~Gi~~~~~---~~-~~~~~yl~a~~I~~~ 59 (118)
-+-.+.|.+-+.+.+ .++-||.|.|.|-++... .| ..+.+-+.|.+|...
T Consensus 61 ~t~w~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL~~~~~dkdG~~r~~~ev~a~~vg~d 118 (128)
T 4dam_A 61 HTNFFTVWANRQLATNASGSLAVGDPVVVQGRLKVRTDVREGQSRTSADIDAVAIGHD 118 (128)
T ss_dssp EEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEC
T ss_pred CcEEEEEEEEcHHHHHHHHhcCCCCEEEEEEEEEEeEEcCCCCEEEEEEEEEEEEEec
Confidence 456788988887764 467899999999987662 33 456666887777654
No 67
>2exd_A NFED short homolog; membrane protein; NMR {Pyrococcus horikoshii} SCOP: b.40.12.1
Probab=31.24 E-value=30 Score=20.70 Aligned_cols=14 Identities=7% Similarity=0.126 Sum_probs=12.3
Q ss_pred cceecCCeEEEEEE
Q psy13876 24 NPTMLQNYCILHGL 37 (118)
Q Consensus 24 d~~~pGd~V~v~Gi 37 (118)
+.+.+|++|.|+++
T Consensus 46 ~~i~~G~~V~Vv~v 59 (80)
T 2exd_A 46 EKLSLGDRVMVVDV 59 (80)
T ss_dssp SCCCTTCEEEEEEE
T ss_pred CccCCCCEEEEEEE
Confidence 46889999999997
No 68
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=31.13 E-value=26 Score=20.47 Aligned_cols=25 Identities=16% Similarity=0.127 Sum_probs=18.4
Q ss_pred ccEEEEEEeeCccc-------ceecCCeEEEE
Q psy13876 11 GKHWILGLLRYWQN-------PTMLQNYCILH 35 (118)
Q Consensus 11 Pr~i~v~l~~dLvd-------~~~pGd~V~v~ 35 (118)
|+.+-|.+.+..+. .++.||+|.|.
T Consensus 28 ~~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv 59 (73)
T 2kl0_A 28 GGHFAVALNYDVVPRGKWDETPVTAGDEIEIL 59 (73)
T ss_dssp SSSCEEEESSSEECHHHHTTCBCCTTCEEEEE
T ss_pred CCcEEEEECCEECChHHcCcccCCCCCEEEEE
Confidence 56666777776654 48899999885
No 69
>3r8n_Q 30S ribosomal protein S17; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_Q 3fih_Q* 3iy8_Q 3j18_Q* 2wwl_Q 3oar_Q 3oaq_Q 3ofb_Q 3ofa_Q 3ofp_Q 3ofx_Q 3ofy_Q 3ofo_Q 3r8o_Q 4a2i_Q 4gd1_Q 4gd2_Q 3i1m_Q 1vs7_Q* 3e1a_J ...
Probab=31.08 E-value=25 Score=21.29 Aligned_cols=18 Identities=6% Similarity=-0.106 Sum_probs=14.7
Q ss_pred ccceecCCeEEEEEEEEEc
Q psy13876 23 QNPTMLQNYCILHGLFVCS 41 (118)
Q Consensus 23 vd~~~pGd~V~v~Gi~~~~ 41 (118)
.+.|+.||.|.|.-. ++.
T Consensus 47 ~n~~~~GD~V~I~e~-RPl 64 (80)
T 3r8n_Q 47 NNECGIGDVVEIREC-RPL 64 (80)
T ss_dssp GGCCCTTCEEEEEEE-EEE
T ss_pred CCCCCCCCEEEEEEe-ccC
Confidence 578999999999876 444
No 70
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=30.93 E-value=1.6e+02 Score=22.94 Aligned_cols=49 Identities=8% Similarity=-0.040 Sum_probs=31.7
Q ss_pred EEEEEEeeCccc-----ceecCCeEEEEEEEEEcCCC--CccceEEEEEEEEEccc
Q psy13876 13 HWILGLLRYWQN-----PTMLQNYCILHGLFVCSSPG--LLSDTYIEAQRIQCLSK 61 (118)
Q Consensus 13 ~i~v~l~~dLvd-----~~~pGd~V~v~Gi~~~~~~~--~~~~~yl~a~~I~~~~~ 61 (118)
.+.|++.+++.+ ++..||-|.|+|+++..+.+ ..-+.-|.+..++...+
T Consensus 41 ~iQvv~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~~~~~~~g~~El~~~~~~vl~~ 96 (435)
T 2xgt_A 41 FLQVLLMDKLCQTYDALTVNTECTVEIYGAIKEVPEGKEAPNGHELIADFWKIIGN 96 (435)
T ss_dssp EEEEEEEGGGGSSHHHHHCCTTCEEEEEEEEEECC------TTEEEEEEEEEEEEC
T ss_pred eEEEEECCcchhHHHHhcCCCCCEEEEEEEEEecCCCcCCCCcEEEEEEEEEEeec
Confidence 377887655432 47889999999999876422 12245566666766653
No 71
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=30.75 E-value=36 Score=20.46 Aligned_cols=25 Identities=0% Similarity=-0.294 Sum_probs=18.1
Q ss_pred EEEEEEe-eCcccceecCCeEEEEEE
Q psy13876 13 HWILGLL-RYWQNPTMLQNYCILHGL 37 (118)
Q Consensus 13 ~i~v~l~-~dLvd~~~pGd~V~v~Gi 37 (118)
+|+..+. ..+...+++||+|.+.=.
T Consensus 34 TM~F~v~~~~~l~~lk~Gd~V~F~~~ 59 (82)
T 2l55_A 34 TMEFAAPPAGLPQGLKAGDRVAFSFR 59 (82)
T ss_dssp EEEEECCTTCCCSSCSTTCEEEEEEE
T ss_pred EEEEEcCChhHhhcCCCCCEEEEEEE
Confidence 4555543 456789999999998754
No 72
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=30.17 E-value=1.1e+02 Score=19.38 Aligned_cols=50 Identities=8% Similarity=-0.049 Sum_probs=34.0
Q ss_pred CccEEEEEEeeCccccee--cCCeEEEEEEEEEc-C----CC-CccceEEEEEEEEEc
Q psy13876 10 VGKHWILGLLRYWQNPTM--LQNYCILHGLFVCS-S----PG-LLSDTYIEAQRIQCL 59 (118)
Q Consensus 10 ~Pr~i~v~l~~dLvd~~~--pGd~V~v~Gi~~~~-~----~~-~~~~~yl~a~~I~~~ 59 (118)
-+-.+.|.+-+.|.+.+. -|++|.|.|-++.. + .| ..+-+.+.|.+|+-+
T Consensus 48 ~~Dfi~ivvw~klAe~~~~~kG~~v~v~G~lrsy~~~~~~dG~~R~v~eV~a~~i~fl 105 (107)
T 4gs3_A 48 TKDYLPITISNRLFEGMNLEVGTRVKIEGQLRSYNRKSPEEGKNKLILTVFARDISVV 105 (107)
T ss_dssp CEEEEEEEEEGGGSTTCCCCTTCEEEEEEEEEEEECC--------EEEEEEEEEEEEE
T ss_pred CCcEEEEEEEhHHhhHHhhcCCCEEEEEEEEEecceEECCCCCEEEEEEEEEEEEEEc
Confidence 356788888888888765 69999999999752 1 23 344555666666644
No 73
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=30.09 E-value=20 Score=21.44 Aligned_cols=26 Identities=0% Similarity=-0.156 Sum_probs=18.5
Q ss_pred cEEEEEEe-eCcccceecCCeEEEEEE
Q psy13876 12 KHWILGLL-RYWQNPTMLQNYCILHGL 37 (118)
Q Consensus 12 r~i~v~l~-~dLvd~~~pGd~V~v~Gi 37 (118)
-+|+..+. ..+.+.+++||+|.+.=.
T Consensus 39 MTM~F~v~~~~~l~~lk~Gd~V~F~~~ 65 (80)
T 2qcp_X 39 MTMRFTITPQTKMSEIKTGDKVAFNFV 65 (80)
T ss_dssp EEEEEECCTTCEECCCCTTCEEEEEEE
T ss_pred eEEEEEccChhhhhcCCCCCEEEEEEE
Confidence 34555544 456789999999998754
No 74
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=30.04 E-value=24 Score=21.55 Aligned_cols=26 Identities=8% Similarity=-0.166 Sum_probs=18.1
Q ss_pred ccEEEEEEeeCccc-------ceecCCeEEEEE
Q psy13876 11 GKHWILGLLRYWQN-------PTMLQNYCILHG 36 (118)
Q Consensus 11 Pr~i~v~l~~dLvd-------~~~pGd~V~v~G 36 (118)
|..+-|.+.+..+. .++.||+|.|.-
T Consensus 50 ~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 50 NKIVIVERNKEIIGKERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp TSCCEEEETTEEECGGGTTTSBCCSSSEEEEEE
T ss_pred CCCEEEEECCEECChhhcCCcCCCCCCEEEEEc
Confidence 44566777776665 488999998863
No 75
>2xzm_Q Ribosomal protein S17 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Q
Probab=29.94 E-value=55 Score=22.39 Aligned_cols=21 Identities=0% Similarity=-0.366 Sum_probs=14.9
Q ss_pred EEeeCcccceecCCeEEEEEE
Q psy13876 17 GLLRYWQNPTMLQNYCILHGL 37 (118)
Q Consensus 17 ~l~~dLvd~~~pGd~V~v~Gi 37 (118)
.+++.-.+.|+.||.|.|.-.
T Consensus 107 ~AHDee~n~~kvGD~V~I~Ec 127 (157)
T 2xzm_Q 107 PVHISPCFSVKEGDILVAGQC 127 (157)
T ss_dssp EEECCTTSCCCTTCEEEEEEC
T ss_pred EEECCCCCCCCCCCEEEEEEc
Confidence 344434567999999998764
No 76
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=29.74 E-value=27 Score=24.06 Aligned_cols=51 Identities=12% Similarity=0.010 Sum_probs=35.6
Q ss_pred ccEEEEEEeeCccc----ceecCCeEEEEEEEEEcC----CC-CccceEE---EEEEEEEccc
Q psy13876 11 GKHWILGLLRYWQN----PTMLQNYCILHGLFVCSS----PG-LLSDTYI---EAQRIQCLSK 61 (118)
Q Consensus 11 Pr~i~v~l~~dLvd----~~~pGd~V~v~Gi~~~~~----~~-~~~~~yl---~a~~I~~~~~ 61 (118)
+-.+.|.+-+.+.+ .++.|+.|.|.|-++.+. .| ..+.+-| .|.+|+.+..
T Consensus 53 t~~i~vv~wg~~Ae~~~~~l~KG~~V~VeGrL~~r~~~dkdG~~r~~~eI~v~va~~i~~l~~ 115 (178)
T 1eqq_A 53 TEWHRVVLFGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGG 115 (178)
T ss_dssp EEEEEEEECHHHHHHHHHHCCTTCEEEECCEEEEEEEECSSSEEEEEEEEECSSSCCEECSCC
T ss_pred cEEEEEEEccHHHHHHHHhcCCCCEEEEEEEEEeeeEECCCCCEEEEEEEeeeecCeEEEccc
Confidence 55788999887764 578899999999998763 23 3445556 4556665543
No 77
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=29.60 E-value=38 Score=19.83 Aligned_cols=26 Identities=12% Similarity=-0.180 Sum_probs=19.1
Q ss_pred CccEEEEEEeeCccc-------ceecCCeEEEE
Q psy13876 10 VGKHWILGLLRYWQN-------PTMLQNYCILH 35 (118)
Q Consensus 10 ~Pr~i~v~l~~dLvd-------~~~pGd~V~v~ 35 (118)
+.+.+.|.+.+..+. .+++||+|.|.
T Consensus 52 ~~~~v~v~vN~~~v~~~~~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 52 LFKNVIILVNGNNITSMKGLDTEIKDDDKIDLF 84 (90)
T ss_dssp STTTCEEEESSSBGGGTCSSSCBCCTTCEEEEE
T ss_pred cCcceEEEECCEEccccCCCCcCCCCCCEEEEe
Confidence 445677878777664 68899999874
No 78
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A
Probab=29.26 E-value=46 Score=20.53 Aligned_cols=29 Identities=7% Similarity=-0.213 Sum_probs=18.6
Q ss_pred cEEEEEEeeCcccceecCCeEEEEEEEEEcC
Q psy13876 12 KHWILGLLRYWQNPTMLQNYCILHGLFVCSS 42 (118)
Q Consensus 12 r~i~v~l~~dLvd~~~pGd~V~v~Gi~~~~~ 42 (118)
|+-.+..+++- +.|+.||.|.|.-. ++.+
T Consensus 37 r~kk~~aHDe~-n~~k~GD~V~I~E~-RPlS 65 (89)
T 1qd7_I 37 YSKKYKAHDEH-NEAKVGDIVKIMET-RPLS 65 (89)
T ss_pred ccEEEEEeCCc-cCCCCCCEEEEEEc-ccCC
Confidence 33344444444 47999999998776 5443
No 79
>3u5c_L RP41, S18, YS12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_P 3o30_F 3o2z_F 3u5g_L 3jyv_Q* 1s1h_Q
Probab=29.12 E-value=58 Score=22.25 Aligned_cols=27 Identities=0% Similarity=-0.337 Sum_probs=17.9
Q ss_pred EEEEEeeCcccceecCCeEEEEEEEEEc
Q psy13876 14 WILGLLRYWQNPTMLQNYCILHGLFVCS 41 (118)
Q Consensus 14 i~v~l~~dLvd~~~pGd~V~v~Gi~~~~ 41 (118)
-...++++-.+.|+.||.|+|.-. ++.
T Consensus 105 kKy~AHDe~~n~~kvGD~V~I~Ec-RPL 131 (156)
T 3u5c_L 105 KNVPVHVSPAFRVQVGDIVTVGQC-RPI 131 (156)
T ss_dssp EEEEEECCTTSCCCTTCEEEEEEE-EEE
T ss_pred eEEEEECCCcCcCCCCCEEEEEec-ccC
Confidence 334444444567999999999876 444
No 80
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=28.70 E-value=18 Score=20.41 Aligned_cols=25 Identities=8% Similarity=-0.128 Sum_probs=18.5
Q ss_pred ccEEEEEEeeCccc-------ceecCCeEEEE
Q psy13876 11 GKHWILGLLRYWQN-------PTMLQNYCILH 35 (118)
Q Consensus 11 Pr~i~v~l~~dLvd-------~~~pGd~V~v~ 35 (118)
|+.+-|.+.+..+. .++.||+|.|.
T Consensus 29 ~~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~ 60 (66)
T 1f0z_A 29 QAGAALAINQQIVPREQWAQHIVQDGDQILLF 60 (66)
T ss_dssp CSSEEEEETTEEECHHHHTTCCCCTTEEECEE
T ss_pred CCCEEEEECCEECCchhcCCcCCCCCCEEEEE
Confidence 55666777777765 48999999875
No 81
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=28.30 E-value=41 Score=20.04 Aligned_cols=29 Identities=0% Similarity=-0.230 Sum_probs=20.5
Q ss_pred CCCCccEEEEEEeeCccc-------ceecCCeEEEE
Q psy13876 7 ASMVGKHWILGLLRYWQN-------PTMLQNYCILH 35 (118)
Q Consensus 7 ~g~~Pr~i~v~l~~dLvd-------~~~pGd~V~v~ 35 (118)
.|++.+.+.|.+.+..+. .+++||+|.|.
T Consensus 52 ~g~~~~~~~v~VN~~~v~~~~~~~~~L~~gDeV~i~ 87 (93)
T 3dwg_C 52 PGKLHRFVNIYVNDEDVRFSGGLATAIADGDSVTIL 87 (93)
T ss_dssp TTSBCTTEEEEETTEEGGGTTGGGCBCCTTCEEEEE
T ss_pred CCcccCCEEEEECCEEccCcCCCCcCCCCCCEEEEE
Confidence 355666677777666543 48899999875
No 82
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=28.11 E-value=1.1e+02 Score=21.48 Aligned_cols=52 Identities=13% Similarity=0.010 Sum_probs=35.2
Q ss_pred ccEEEEEEeeC-cc----cceecCCeEEEEEEEEEcC----CC-CccceEEEEE----EEEEcccc
Q psy13876 11 GKHWILGLLRY-WQ----NPTMLQNYCILHGLFVCSS----PG-LLSDTYIEAQ----RIQCLSKA 62 (118)
Q Consensus 11 Pr~i~v~l~~d-Lv----d~~~pGd~V~v~Gi~~~~~----~~-~~~~~yl~a~----~I~~~~~~ 62 (118)
+..+.|.+-+. +. ..++.|+.|.|.|-++.+. .| ..+.+-|.|. .|+-++..
T Consensus 73 Tdwi~Vvawgk~lAe~~~~yL~KGs~V~VeGrL~trswedkdG~kr~~tEVva~~~~~~i~fL~sk 138 (193)
T 3pgz_A 73 TEWHNIVIFNENLVKVVEQYLKKGSKIYIEGQLQTRKWQDQNGNDRYTTEIVLQKYRGELQMLDGR 138 (193)
T ss_dssp EEEEEEEECCHHHHHHHHHHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEECTTCCEEEECC--
T ss_pred eEEEEEEEECHHHHHHHHhhcCCCCEEEEEEEEEEEEeECCCCCEEEEEEEEEEeccCceEECcCC
Confidence 55788888875 44 3477899999999998762 23 4556667776 46666543
No 83
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.10 E-value=21 Score=20.08 Aligned_cols=11 Identities=0% Similarity=-0.284 Sum_probs=8.9
Q ss_pred ceecCCeEEEE
Q psy13876 25 PTMLQNYCILH 35 (118)
Q Consensus 25 ~~~pGd~V~v~ 35 (118)
.++|||.|.|+
T Consensus 7 ~f~~GD~V~V~ 17 (59)
T 2e6z_A 7 GFQPGDNVEVC 17 (59)
T ss_dssp SCCTTSEEEEC
T ss_pred cCCCCCEEEEe
Confidence 47899999875
No 84
>3b9c_A HSPC159; beta sandwich, unknown function; 1.90A {Homo sapiens} PDB: 2jj6_A
Probab=27.99 E-value=41 Score=22.16 Aligned_cols=26 Identities=4% Similarity=0.002 Sum_probs=20.2
Q ss_pred EEEEeeCcccceecCCeEEEEEEEEE
Q psy13876 15 ILGLLRYWQNPTMLQNYCILHGLFVC 40 (118)
Q Consensus 15 ~v~l~~dLvd~~~pGd~V~v~Gi~~~ 40 (118)
.|.....+...++||..|+|.|+...
T Consensus 9 ~~~~~~~i~~gl~~G~~i~I~G~v~~ 34 (144)
T 3b9c_A 9 MVPFCGHIKGGMRPGKKVLVMGIVDL 34 (144)
T ss_dssp --CEEEECTTCCCTTCEEEEEEEECS
T ss_pred eeeEcccCCCCCccCCEEEEEEEECC
Confidence 34556778889999999999999753
No 85
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=27.69 E-value=1.8e+02 Score=23.72 Aligned_cols=50 Identities=12% Similarity=-0.041 Sum_probs=33.7
Q ss_pred EEEEEEeeC-----cccceecCCeEEEEEEEEEcCC---C-CccceEEEEEEEEEcccc
Q psy13876 13 HWILGLLRY-----WQNPTMLQNYCILHGLFVCSSP---G-LLSDTYIEAQRIQCLSKA 62 (118)
Q Consensus 13 ~i~v~l~~d-----Lvd~~~pGd~V~v~Gi~~~~~~---~-~~~~~yl~a~~I~~~~~~ 62 (118)
.+.|++..+ ...++..||-|.|+|++...+. + ..-+.-|.|..++..++.
T Consensus 45 ~iQvv~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~ge~Ei~~~~i~vl~~a 103 (580)
T 1l0w_A 45 LVQLVAHPASPAYATAERVRPEWVVRAKGLVRLRPEPNPRLATGRVEVELSALEVLAEA 103 (580)
T ss_dssp EEEEEECTTSTTHHHHTTCCTTCEEEEEEEEEECSSCCTTSTTTTEEEEEEEEEEEECC
T ss_pred eEEEEEeCChhHHHHHhcCCCCcEEEEEEEEEcCCCcCccCCCccEEEEEeEEEEeccC
Confidence 366777543 3467899999999999987741 1 233456777777766653
No 86
>2d7e_A Primosomal protein N'; inter-twined, hydrolase; 2.50A {Escherichia coli} PDB: 2d7g_A* 2d7h_A* 2dwl_A 2dwm_A 2dwn_A*
Probab=26.90 E-value=36 Score=21.03 Aligned_cols=23 Identities=4% Similarity=-0.181 Sum_probs=16.3
Q ss_pred CccEEEEEEeeCcccceecCCeEEE
Q psy13876 10 VGKHWILGLLRYWQNPTMLQNYCIL 34 (118)
Q Consensus 10 ~Pr~i~v~l~~dLvd~~~pGd~V~v 34 (118)
+.|.++-.+..++. +++|+||.|
T Consensus 12 l~~~f~Y~vp~~l~--~~~G~rV~V 34 (105)
T 2d7e_A 12 LPRTFDYLLPEGMT--VKAGCRVRV 34 (105)
T ss_dssp SSCCEEEECCTTCC--CCTTCEEEE
T ss_pred CCCCEEEeCCCcCC--CCCCcEEEE
Confidence 45666666666665 889999975
No 87
>1ixl_A Hypothetical protein PH1136; alpha+beta, hot-DOG-fold, structural genomics, unknown funct; 1.94A {Pyrococcus horikoshii} SCOP: d.38.1.5
Probab=26.86 E-value=1e+02 Score=18.88 Aligned_cols=31 Identities=3% Similarity=-0.041 Sum_probs=24.1
Q ss_pred ccEEEEEEeeCcccceecCCeEEEEEEEEEc
Q psy13876 11 GKHWILGLLRYWQNPTMLQNYCILHGLFVCS 41 (118)
Q Consensus 11 Pr~i~v~l~~dLvd~~~pGd~V~v~Gi~~~~ 41 (118)
|..+...+.=+....+.+||.+++.+.+...
T Consensus 66 ~~~vt~~~~i~f~~pv~~Gd~l~~~~~v~~~ 96 (131)
T 1ixl_A 66 PTVVLGKAEVRFTKPVKVGDKLVAKAKIIED 96 (131)
T ss_dssp TTEEEEEEEEEECSCCBTTCEEEEEEEEEEE
T ss_pred CceEEEEEEEEECCCCCCCCEEEEEEEEEEe
Confidence 3456666777888899999999999976543
No 88
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=26.75 E-value=94 Score=20.61 Aligned_cols=28 Identities=4% Similarity=-0.140 Sum_probs=25.1
Q ss_pred cEEEEEEeeCcccceecCCeEEEEEEEE
Q psy13876 12 KHWILGLLRYWQNPTMLQNYCILHGLFV 39 (118)
Q Consensus 12 r~i~v~l~~dLvd~~~pGd~V~v~Gi~~ 39 (118)
.++.|...+-|-|.++.|.-|.+.|.|.
T Consensus 60 ~~v~V~Y~GilPDlFrEGqgVVa~G~l~ 87 (136)
T 1sr3_A 60 GSVDVSYEGILPDLFREGQGVVVQGELE 87 (136)
T ss_dssp CEEEEEEESCCCTTCCTTSEEEEEEEEC
T ss_pred cEEEEEECCCCCccccCCCeEEEEEEEC
Confidence 4688999999999999999999999986
No 89
>2hba_A BL17, 50S ribosomal protein L9; NTL9, K12M, RNA binding protein; 1.25A {Geobacillus stearothermophilus} SCOP: d.100.1.1 PDB: 1cqu_A 2hbb_A 2hvf_A
Probab=26.60 E-value=31 Score=19.13 Aligned_cols=21 Identities=5% Similarity=-0.191 Sum_probs=16.0
Q ss_pred EEEEEeeCcccceecCCeEEE
Q psy13876 14 WILGLLRYWQNPTMLQNYCIL 34 (118)
Q Consensus 14 i~v~l~~dLvd~~~pGd~V~v 34 (118)
|.|+|..|.-+-=+.||.|.|
T Consensus 1 MkVIL~~dV~~lG~~Gdvv~V 21 (52)
T 2hba_A 1 MKVIFLKDVKGMGKKGEIKNV 21 (52)
T ss_dssp CEEEESSCBTTTBCTTCEEEC
T ss_pred CEEEEcccccccCcCCCEEEE
Confidence 467888887777778887776
No 90
>3cdd_A Prophage MUSO2, 43 kDa tail protein; shewanella oneidensis MR-1, structural genomics, PSI- protein structure initiative; HET: MSE; 2.10A {Shewanella oneidensis} SCOP: b.106.1.1 b.106.1.1
Probab=26.44 E-value=51 Score=24.60 Aligned_cols=33 Identities=12% Similarity=0.200 Sum_probs=23.1
Q ss_pred ccccCCCCCccEEEEEEeeCc----------ccceecCCeEEE
Q psy13876 2 RIATGASMVGKHWILGLLRYW----------QNPTMLQNYCIL 34 (118)
Q Consensus 2 ~~~~~~g~~Pr~i~v~l~~dL----------vd~~~pGd~V~v 34 (118)
++..+.+..|.++++.|.+.+ ...+.||+.|.|
T Consensus 23 ~v~~~~~~~ad~~~l~l~d~~~~~~~~~~~~~~~~~~G~~v~v 65 (361)
T 3cdd_A 23 GITRSLEAMSGAFDLEMTYKFLGNDAQYKAFIEPIKQGQACTV 65 (361)
T ss_dssp EEEEESSSTTCEEEEEEEEECTTSCGGGCCCSCCCCTTCEEEE
T ss_pred EEecchhcCCceEEEEEecccCCccccccccccccCCCCEEEE
Confidence 344556778999999998632 224578888886
No 91
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=25.97 E-value=28 Score=22.44 Aligned_cols=25 Identities=8% Similarity=-0.094 Sum_probs=21.2
Q ss_pred cEEEEEEeeCcccceecCCeEEEEE
Q psy13876 12 KHWILGLLRYWQNPTMLQNYCILHG 36 (118)
Q Consensus 12 r~i~v~l~~dLvd~~~pGd~V~v~G 36 (118)
+++++.+.+.--.++++||.+.+..
T Consensus 21 KtiEiR~nd~~~~~i~vGD~I~f~~ 45 (113)
T 1xne_A 21 KRIEVRVAYPQLKDIKRGDKIIFND 45 (113)
T ss_dssp CCEEECCCTTTTTTCCTTCEEEETT
T ss_pred cEEEEEecchhhhccCCCCEEEEcc
Confidence 6788989888888999999888754
No 92
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=25.40 E-value=74 Score=21.23 Aligned_cols=33 Identities=12% Similarity=0.055 Sum_probs=27.6
Q ss_pred CccEEEEEEeeCc-c----cceecCCeEEEEEEEEEcC
Q psy13876 10 VGKHWILGLLRYW-Q----NPTMLQNYCILHGLFVCSS 42 (118)
Q Consensus 10 ~Pr~i~v~l~~dL-v----d~~~pGd~V~v~Gi~~~~~ 42 (118)
-+..+.|.+-+.+ . ..++-|+.|.|.|-++...
T Consensus 50 ~t~w~~vv~wgk~lAe~~~~yl~KG~~V~VeGrL~~r~ 87 (148)
T 3k7u_C 50 EKDHHTIRCFGELFSAEVKQKVKEGNVVCVNGRLRLSP 87 (148)
T ss_dssp CEEEEEEEEESHHHHHHHHHHCCTTCEEEEEEEEEECC
T ss_pred ccEEEEEEEECcHHHHHHHhhCCCCCEEEEEEEEEeee
Confidence 4678999999887 4 4588899999999999873
No 93
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=25.37 E-value=1.9e+02 Score=23.82 Aligned_cols=50 Identities=8% Similarity=0.042 Sum_probs=34.9
Q ss_pred EEEEEEeeCc--------ccceecCCeEEEEEEEEEcCCC------CccceEEEEEEEEEcccc
Q psy13876 13 HWILGLLRYW--------QNPTMLQNYCILHGLFVCSSPG------LLSDTYIEAQRIQCLSKA 62 (118)
Q Consensus 13 ~i~v~l~~dL--------vd~~~pGd~V~v~Gi~~~~~~~------~~~~~yl~a~~I~~~~~~ 62 (118)
.+.|++..+. ..++..|+-|.|+|+++.++.+ +.-+.-|.|..++..++.
T Consensus 50 ~iQvv~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~~~tgeiEl~~~~i~vL~~a 113 (617)
T 4ah6_A 50 LVQVIIPQDESAASVKKILCEAPVESVVQVSGTVISRPAGQENPKMPTGEIEIKVKTAELLNAC 113 (617)
T ss_dssp EEEEECCCSSSSHHHHHHHHHCCSSCEEEEEEEEEECSTTCCCTTSTTTTEEEEEEEEEEEECB
T ss_pred CEEEEEeCCcCcHHHHHHHhcCCCCCEEEEEEEEEeCCccccCccCCCCcEEEEEeEEEEeecC
Confidence 5777777654 3468899999999999876422 223566777777776553
No 94
>2f41_A Transcription factor FAPR; 'HOT-DOG' fold, gene regulation; 2.50A {Bacillus subtilis} SCOP: d.38.1.5
Probab=25.03 E-value=74 Score=19.59 Aligned_cols=27 Identities=0% Similarity=-0.151 Sum_probs=21.6
Q ss_pred EEEEEEeeCcccceecCCeEEEEEEEE
Q psy13876 13 HWILGLLRYWQNPTMLQNYCILHGLFV 39 (118)
Q Consensus 13 ~i~v~l~~dLvd~~~pGd~V~v~Gi~~ 39 (118)
.+.....=.....+.|||.+++.+.+.
T Consensus 60 ~~~~~~~i~F~~Pv~~Gd~l~~~a~v~ 86 (121)
T 2f41_A 60 ALTASADIRFTRQVKQGERVVAKAKVT 86 (121)
T ss_dssp CCEEEEEEEECSCCBTTCEEEEEEEEE
T ss_pred EEEEEeeEEEeCCcCCCCEEEEEEEEE
Confidence 455555567888999999999999876
No 95
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=24.91 E-value=74 Score=18.21 Aligned_cols=11 Identities=0% Similarity=-0.257 Sum_probs=8.8
Q ss_pred ceecCCeEEEE
Q psy13876 25 PTMLQNYCILH 35 (118)
Q Consensus 25 ~~~pGd~V~v~ 35 (118)
.+++||.|++.
T Consensus 22 ~v~~Gd~V~~~ 32 (91)
T 1bxv_A 22 EIQAGDTVQWV 32 (91)
T ss_dssp EECTTCEEEEE
T ss_pred EECCCCEEEEE
Confidence 67899998764
No 96
>3nv1_A Galectin-9, galectin 9 short isoform variant; sugar binding, sugar binding protein; 1.50A {Homo sapiens} SCOP: b.29.1.0 PDB: 3nv2_A* 3nv3_A* 3nv4_A*
Probab=24.81 E-value=59 Score=21.10 Aligned_cols=23 Identities=9% Similarity=0.046 Sum_probs=18.8
Q ss_pred EeeCcccceecCCeEEEEEEEEE
Q psy13876 18 LLRYWQNPTMLQNYCILHGLFVC 40 (118)
Q Consensus 18 l~~dLvd~~~pGd~V~v~Gi~~~ 40 (118)
....+-+.++||..|+|.|+...
T Consensus 10 ~~~~i~~gl~~G~~i~I~G~v~~ 32 (138)
T 3nv1_A 10 FITTILGGLYPSKSILLSGTVLP 32 (138)
T ss_dssp EEEECTTCCCTTCEEEEEEEECT
T ss_pred EEeeCCCCCCCCCEEEEEEEECC
Confidence 35567788999999999999853
No 97
>3bnv_A CJ0977; virulence factor, hot-DOG fold, flagel unknown function; HET: MSE; 2.60A {Campylobacter jejuni}
Probab=24.76 E-value=1e+02 Score=20.10 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=24.2
Q ss_pred cEEEEEEeeCcccceecCCeEEEEEEEEEc
Q psy13876 12 KHWILGLLRYWQNPTMLQNYCILHGLFVCS 41 (118)
Q Consensus 12 r~i~v~l~~dLvd~~~pGd~V~v~Gi~~~~ 41 (118)
..+.....=+....+.|||.+++.+.+...
T Consensus 86 ~~vt~~~~i~F~~PV~~GD~L~a~a~v~~~ 115 (152)
T 3bnv_A 86 FSVIIGSKCFFYAPLKLGDVLELEAHALFD 115 (152)
T ss_dssp SEEEEEEEEEECSCCBTTCEEEEEEEECCC
T ss_pred cEEEEEEEEEEeCCCCCCCEEEEEEEEEEE
Confidence 467777777888999999999999976543
No 98
>3d6r_B NS1, NS1A, non-structural protein 1; effector domain, alternative splicing, cytoplasm, HOST-virus interaction; 2.00A {Influenza a virus} PDB: 3oa9_A
Probab=24.55 E-value=43 Score=22.38 Aligned_cols=20 Identities=55% Similarity=0.976 Sum_probs=14.8
Q ss_pred cccccCc--HHHHHHHHHHHhcC
Q psy13876 94 APEIYGH--EDVKKALLLLLVGG 114 (118)
Q Consensus 94 aP~I~G~--~~vK~ailL~L~GG 114 (118)
.|+..|| |+||.||-. |.||
T Consensus 91 lpslPGHt~EdVKnAigv-lIgG 112 (158)
T 3d6r_B 91 IPSMPGHSTEDVKNAIGI-LIGG 112 (158)
T ss_dssp CTTSCCCCHHHHHHHHHH-HHHH
T ss_pred CCCCCCCchHHHHhhHhh-eecc
Confidence 4889998 889999864 3444
No 99
>3cp0_A Membrane protein implicated in regulation of MEMB protease activity; beta barrel, structural genomics, PSI-2; 1.65A {Corynebacterium glutamicum atcc 13032}
Probab=24.17 E-value=49 Score=19.39 Aligned_cols=14 Identities=0% Similarity=-0.104 Sum_probs=12.1
Q ss_pred cceecCCeEEEEEE
Q psy13876 24 NPTMLQNYCILHGL 37 (118)
Q Consensus 24 d~~~pGd~V~v~Gi 37 (118)
+.+.+|++|.|+++
T Consensus 58 ~~i~~G~~V~Vv~v 71 (82)
T 3cp0_A 58 HTFAEGEIVSVIDI 71 (82)
T ss_dssp CCBCTTCEEEEEEE
T ss_pred CccCCCCEEEEEEE
Confidence 35889999999997
No 100
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=23.83 E-value=43 Score=19.29 Aligned_cols=14 Identities=0% Similarity=-0.206 Sum_probs=11.7
Q ss_pred cceecCCeEEEEEE
Q psy13876 24 NPTMLQNYCILHGL 37 (118)
Q Consensus 24 d~~~pGd~V~v~Gi 37 (118)
..+++||.+.+.|-
T Consensus 59 ~~l~~GD~l~v~g~ 72 (86)
T 3jxo_A 59 TEILSGDKLYVIVS 72 (86)
T ss_dssp CBCCTTCEEEEEEE
T ss_pred CEECCCCEEEEEEC
Confidence 45789999999885
No 101
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=23.61 E-value=61 Score=19.74 Aligned_cols=18 Identities=11% Similarity=0.224 Sum_probs=13.0
Q ss_pred cceecCCeEEE-----EEEEEEc
Q psy13876 24 NPTMLQNYCIL-----HGLFVCS 41 (118)
Q Consensus 24 d~~~pGd~V~v-----~Gi~~~~ 41 (118)
++++.||||.| .|+++-.
T Consensus 4 ~~i~vG~Rv~v~~~~~~G~Vryv 26 (84)
T 4b6m_A 4 ETIHVGDRCLCRPGDRLGSVRFV 26 (84)
T ss_dssp -CCCTTCEEEETTTTEEEEEEEE
T ss_pred cCcccCCEEEEcCCCeEEEEEEE
Confidence 56788999998 4777644
No 102
>2isb_A Fumarase, FUM-1; NP_069927.1, fumarase of FUM-1, structural genomics, PSI-2, structure initiative, joint center for structural genomics; HET: MSE; 1.66A {Archaeoglobus fulgidus} SCOP: c.8.9.1
Probab=23.28 E-value=24 Score=25.03 Aligned_cols=27 Identities=7% Similarity=-0.106 Sum_probs=19.1
Q ss_pred EEEEEeeC----cccceecCCeEEEEEEEEE
Q psy13876 14 WILGLLRY----WQNPTMLQNYCILHGLFVC 40 (118)
Q Consensus 14 i~v~l~~d----Lvd~~~pGd~V~v~Gi~~~ 40 (118)
|++.|... -+.+.++||+|.++|.+-+
T Consensus 15 ~~~~l~~Plt~e~v~~L~vGD~V~LsG~i~t 45 (192)
T 2isb_A 15 MEYELRTPLVKDQILKLKVGDVVYITGEIFT 45 (192)
T ss_dssp CEEEEESSCCHHHHHHCCTTCEEEEEEEEEE
T ss_pred EEEEeCCCCCHHHHhhCCCCCEEEEEEEEEE
Confidence 34444444 4567999999999998643
No 103
>1w9z_A VP9, bannavirus VP9; virus coat protein, dsRNA virus, outer core protein; 2.6A {Banna virus}
Probab=23.19 E-value=9 Score=27.84 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=18.1
Q ss_pred eCcccceecCCeEEEEEEEEE
Q psy13876 20 RYWQNPTMLQNYCILHGLFVC 40 (118)
Q Consensus 20 ~dLvd~~~pGd~V~v~Gi~~~ 40 (118)
..|++.+.||||+..+|-|--
T Consensus 212 tnl~Nslv~gdR~rpvGLyVD 232 (283)
T 1w9z_A 212 TNLVNSLVPGERTRPVGLYVD 232 (283)
T ss_dssp HHHHTTSCGGGBCCCCEEEEC
T ss_pred HHHHhhcCCCCCcCceeEEEe
Confidence 357899999999999999863
No 104
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=22.70 E-value=95 Score=19.34 Aligned_cols=29 Identities=3% Similarity=-0.263 Sum_probs=22.3
Q ss_pred EEEEEeeCcc---cceecCCeEEEEEEEEEcC
Q psy13876 14 WILGLLRYWQ---NPTMLQNYCILHGLFVCSS 42 (118)
Q Consensus 14 i~v~l~~dLv---d~~~pGd~V~v~Gi~~~~~ 42 (118)
+.|.+-+.+. .++..|+.|.|.|-+..++
T Consensus 50 i~vv~wGk~AE~~~~~~kGs~V~VeGrL~trs 81 (101)
T 3en2_A 50 IEALGAGKMASVLDRIAPGTVLECVGFLARKH 81 (101)
T ss_dssp EEEEEETHHHHHHTTSCTTCEEEEEEEEEECC
T ss_pred EEEEEEhHHHHHHhhcCCCCEEEEEEEEEeCc
Confidence 5667766543 4677899999999999775
No 105
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=22.62 E-value=94 Score=20.59 Aligned_cols=28 Identities=4% Similarity=-0.071 Sum_probs=25.2
Q ss_pred cEEEEEEeeCcccceecCCeEEEEEEEE
Q psy13876 12 KHWILGLLRYWQNPTMLQNYCILHGLFV 39 (118)
Q Consensus 12 r~i~v~l~~dLvd~~~pGd~V~v~Gi~~ 39 (118)
.++.|...+-|-|.++.|.-|.+.|.|.
T Consensus 65 ~~v~V~Y~GilPDlFrEGqgVVa~G~l~ 92 (136)
T 1j6q_A 65 GEILVTYDDLLPDLFREGQGIVAQGVLG 92 (136)
T ss_dssp CCEEEEECSCCTTSCCSSSEEEEEEEEC
T ss_pred CEEEEEECCCCCccccCCCeEEEEEEEC
Confidence 4688889999999999999999999986
No 106
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=22.61 E-value=46 Score=20.27 Aligned_cols=12 Identities=42% Similarity=0.423 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHh
Q psy13876 101 EDVKKALLLLLV 112 (118)
Q Consensus 101 ~~vK~ailL~L~ 112 (118)
+++|+||-|+|=
T Consensus 13 eDLkrAieLSL~ 24 (81)
T 1q0v_A 13 ELIRKAIELSLK 24 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhHH
Confidence 689999999884
No 107
>1wru_A 43 kDa tail protein; bacteriophage MU, baseplate, gene product 44, structural Pro; 2.10A {Enterobacteria phage MU} SCOP: b.106.1.1 b.106.1.1
Probab=22.57 E-value=56 Score=24.68 Aligned_cols=32 Identities=13% Similarity=-0.014 Sum_probs=21.8
Q ss_pred cccCCCCCccEEEEEEe---eCcccceecCCeEEE
Q psy13876 3 IATGASMVGKHWILGLL---RYWQNPTMLQNYCIL 34 (118)
Q Consensus 3 ~~~~~g~~Pr~i~v~l~---~dLvd~~~pGd~V~v 34 (118)
+.-+.+.+|.++++.|. .+....+.||+.|.|
T Consensus 22 v~~~~~~~ad~~~l~l~~~~~~~~~~~~~G~~l~v 56 (379)
T 1wru_A 22 VTRSIESVAGYFELGVNVPPGTDLSGLAPGKKFTL 56 (379)
T ss_dssp EEEETTCSCCEEEEEEEECTTCCCGGGCTTCEEEE
T ss_pred EecccccCCceEEEEEEcCCCCCccccCCCCEEEE
Confidence 44456778999999996 222334577888776
No 108
>1r6x_A ATP:sulfate adenylyltransferase; APS kinase-like domain; 1.40A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5
Probab=22.45 E-value=72 Score=24.87 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=28.3
Q ss_pred CccccCC-CCCccEEEEEEeeCcccceecCCeEEE-------EEEEEEc
Q psy13876 1 MRIATGA-SMVGKHWILGLLRYWQNPTMLQNYCIL-------HGLFVCS 41 (118)
Q Consensus 1 ~~~~~~~-g~~Pr~i~v~l~~dLvd~~~pGd~V~v-------~Gi~~~~ 41 (118)
||++.|. =.+|=+++| ..+..+.+++||+|.+ .|++...
T Consensus 71 ~rL~dG~~wpiPI~L~v--~~e~~~~l~~g~~vaL~~~~g~~~ail~v~ 117 (395)
T 1r6x_A 71 SRLADGTLWTIPITLDV--DEAFANQIKPDTRIALFQDDEIPIAILTVQ 117 (395)
T ss_dssp SBCTTSCBCCSCCCEEE--CHHHHHTCCTTCEEEEEETTTEEEEEEEEE
T ss_pred CcCCCCCCcceEEEEeC--CHHHHhhcCCCCEEEEEcCCCceEEEEEee
Confidence 7888873 235655555 7778889999999977 6777643
No 109
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=22.43 E-value=2e+02 Score=23.33 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=33.3
Q ss_pred EEEEEEee-C--------cccceecCCeEEEEEEEEEcCC---C-CccceEEEEEEEEEccc
Q psy13876 13 HWILGLLR-Y--------WQNPTMLQNYCILHGLFVCSSP---G-LLSDTYIEAQRIQCLSK 61 (118)
Q Consensus 13 ~i~v~l~~-d--------Lvd~~~pGd~V~v~Gi~~~~~~---~-~~~~~yl~a~~I~~~~~ 61 (118)
.+.|++.. + ++.++..|+.|.|+|++...+. + ...+.-|.+..|+..++
T Consensus 91 ~iQ~v~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~El~~~~i~vls~ 152 (548)
T 3i7f_A 91 TCQALVMKSETISKEFVQFCQKISAESICDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSL 152 (548)
T ss_dssp EEEEEEECSSSSCHHHHHHHHTCCTTEEEEEEEEEEECSSCCTTSSSCSEEEEEEEEEEEEC
T ss_pred eEEEEEECCCccCHHHHHHHhCCCCCCEEEEEEEEEeCCcccccCCCCcEEEEEeEEEEEec
Confidence 57777765 2 2457899999999999987742 1 12345567767766554
No 110
>3rvc_A NS1, NS1A, non-structural protein 1; interferon antagonist, protein binding; 1.80A {Influenza a virus} PDB: 3o9q_A 3o9r_A 3l4q_A 3o9t_A* 3o9s_A* 3o9u_B 2gx9_A 3p38_A 3p39_A 3p31_A 2kkz_A 2rhk_A 3kwg_A 3kwi_A 3m5r_A 3ee9_A 3ee8_A
Probab=22.19 E-value=52 Score=21.80 Aligned_cols=20 Identities=55% Similarity=0.941 Sum_probs=14.6
Q ss_pred cccccCc--HHHHHHHHHHHhcC
Q psy13876 94 APEIYGH--EDVKKALLLLLVGG 114 (118)
Q Consensus 94 aP~I~G~--~~vK~ailL~L~GG 114 (118)
.|+..|| |+||.||-. |.||
T Consensus 85 lpslpght~edvknaigv-ligg 106 (152)
T 3rvc_A 85 LPSLPGHTAEDVKNAVGV-LIGG 106 (152)
T ss_dssp CTTCCCCCHHHHHHHHHH-HHHH
T ss_pred CCCCCCCchHHHHHhHhh-eecc
Confidence 4888897 889999854 3444
No 111
>3zxf_A Galectin-7; sugar binding protein; 1.38A {Homo sapiens} SCOP: b.29.1.3 PDB: 1bkz_A 2gal_A* 3gal_A* 4gal_A* 5gal_A* 3zxe_A*
Probab=21.94 E-value=31 Score=22.49 Aligned_cols=22 Identities=9% Similarity=-0.081 Sum_probs=18.2
Q ss_pred EeeCcccceecCCeEEEEEEEE
Q psy13876 18 LLRYWQNPTMLQNYCILHGLFV 39 (118)
Q Consensus 18 l~~dLvd~~~pGd~V~v~Gi~~ 39 (118)
....+-+.++||+.|+|.|+..
T Consensus 8 ~~~~i~~gl~~G~~i~I~G~v~ 29 (138)
T 3zxf_A 8 HKSSLPEGIRPGTVLRIRGLVP 29 (138)
T ss_dssp EEEECTTCCCSSEEEEEEEEEC
T ss_pred EEeecCCCCCCCCEEEEEEEEC
Confidence 3456677899999999999975
No 112
>2zkq_q 40S ribosomal protein S11E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyv_Q* 1s1h_Q
Probab=21.92 E-value=52 Score=22.56 Aligned_cols=13 Identities=0% Similarity=-0.021 Sum_probs=10.0
Q ss_pred ceecCCeEEEEEE
Q psy13876 25 PTMLQNYCILHGL 37 (118)
Q Consensus 25 ~~~pGd~V~v~Gi 37 (118)
.|+.||.|.|.-.
T Consensus 119 ~~kvGD~V~I~E~ 131 (158)
T 2zkq_q 119 DVQIGDIVTVGEC 131 (158)
T ss_dssp CC-CCCEEEEECC
T ss_pred cCCCCCEEEEEEc
Confidence 6999999998654
No 113
>2f3x_A Transcription factor FAPR; 'HOT-DOG' fold / malonyl-COA complex, gene regulation; HET: MLC; 3.10A {Bacillus subtilis} SCOP: d.38.1.5
Probab=21.85 E-value=1.2e+02 Score=19.98 Aligned_cols=28 Identities=0% Similarity=-0.171 Sum_probs=22.6
Q ss_pred cEEEEEEeeCcccceecCCeEEEEEEEE
Q psy13876 12 KHWILGLLRYWQNPTMLQNYCILHGLFV 39 (118)
Q Consensus 12 r~i~v~l~~dLvd~~~pGd~V~v~Gi~~ 39 (118)
-.+.....=.....+.|||.+++.+.+.
T Consensus 95 ~~~t~~~~i~F~rPV~~GD~L~a~a~v~ 122 (157)
T 2f3x_A 95 LALTASADIRFTRQVKQGERVVAKAKVT 122 (157)
T ss_dssp CCEEEEEEEEECSCCBTTCEEEEEEEEE
T ss_pred eEEEEEEEEEEeCCCCCCCEEEEEEEEE
Confidence 3566666667888999999999999876
No 114
>2yro_A Galectin-8; GAL-BIND lectin, sugar binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.75 E-value=47 Score=22.16 Aligned_cols=27 Identities=11% Similarity=0.065 Sum_probs=21.2
Q ss_pred EEEEEeeCcccceecCCeEEEEEEEEE
Q psy13876 14 WILGLLRYWQNPTMLQNYCILHGLFVC 40 (118)
Q Consensus 14 i~v~l~~dLvd~~~pGd~V~v~Gi~~~ 40 (118)
+.|=....+-..++||..|+|.|+...
T Consensus 15 ~~vPf~~~ip~gl~~G~~i~I~G~v~~ 41 (155)
T 2yro_A 15 LSLPFAARLNTPMGPGRTVVVKGEVNA 41 (155)
T ss_dssp CCSSEEEECSSCCCTTCEEEEEEEECT
T ss_pred cccCEeeecCCCCccCCEEEEEEEECC
Confidence 344456677788999999999999853
No 115
>3v2d_E 50S ribosomal protein L3; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_C 2hgj_E 2hgq_E 2hgu_E 1vsa_C 2j03_E 2jl6_E 2jl8_E 2v47_E 2v49_E 2wdi_E 2wdj_E 2wdl_E 2wdn_E 2wh2_E 2wh4_E 2wrj_E 2wrl_E 2wro_E 2wrr_E ...
Probab=21.61 E-value=55 Score=23.37 Aligned_cols=33 Identities=6% Similarity=-0.141 Sum_probs=21.8
Q ss_pred CCCCccEEEEEEeeC-c------ccceecCCeEEEEEEEE
Q psy13876 7 ASMVGKHWILGLLRY-W------QNPTMLQNYCILHGLFV 39 (118)
Q Consensus 7 ~g~~Pr~i~v~l~~d-L------vd~~~pGd~V~v~Gi~~ 39 (118)
||-.|+....+++-+ . +|-+.+|+.|+|+|+=+
T Consensus 70 agv~pkr~l~Efrv~~~~G~~i~v~~F~~G~~VDV~g~sK 109 (206)
T 3v2d_E 70 AGVEPVRILREIRDFNPEGDTVTVEIFKPGERVDVTGTSK 109 (206)
T ss_dssp TCCCCEEEEEEEETCCCSSSEECGGGCCTTCEEEEEEECC
T ss_pred cCCCcCeEEEEEECCCCCCCEEEeeeecCCCEEEEEEEEe
Confidence 455566655555421 1 36689999999999943
No 116
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1}
Probab=21.60 E-value=41 Score=26.01 Aligned_cols=13 Identities=15% Similarity=0.036 Sum_probs=11.7
Q ss_pred ceecCCeEEEEEE
Q psy13876 25 PTMLQNYCILHGL 37 (118)
Q Consensus 25 ~~~pGd~V~v~Gi 37 (118)
.+++||.|++.|-
T Consensus 328 ~~~~GD~V~l~G~ 340 (395)
T 3hur_A 328 KYPIGTRVTLIGK 340 (395)
T ss_dssp CCCTTCEEEEEES
T ss_pred CCCCCCEEEEEcC
Confidence 6899999999993
No 117
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=21.55 E-value=53 Score=18.65 Aligned_cols=25 Identities=0% Similarity=-0.310 Sum_probs=16.7
Q ss_pred ccEEEEEEeeCccc---ceecCCeEEEE
Q psy13876 11 GKHWILGLLRYWQN---PTMLQNYCILH 35 (118)
Q Consensus 11 Pr~i~v~l~~dLvd---~~~pGd~V~v~ 35 (118)
|..+-|.+.+..+. .+++||+|.|.
T Consensus 37 ~~~v~vavN~~~v~~~~~L~~gD~V~ii 64 (70)
T 1ryj_A 37 IETVVVKKNGQIVIDEEEIFDGDIIEVI 64 (70)
T ss_dssp TTTEEEEETTEECCTTSBCCTTCEEEEE
T ss_pred CCCEEEEECCEECCCcccCCCCCEEEEE
Confidence 44455666555543 78899999875
No 118
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=21.37 E-value=84 Score=23.47 Aligned_cols=28 Identities=14% Similarity=0.056 Sum_probs=21.6
Q ss_pred cEEEEEEeeC--------cccceecCCeEEEEEEEE
Q psy13876 12 KHWILGLLRY--------WQNPTMLQNYCILHGLFV 39 (118)
Q Consensus 12 r~i~v~l~~d--------Lvd~~~pGd~V~v~Gi~~ 39 (118)
..+++.+... |.+.+++||.|.|.|-+-
T Consensus 215 ~~~~i~Vk~~~~G~~S~~L~~~l~~Gd~v~v~gP~G 250 (396)
T 1gvh_A 215 KGYRIAVKREEGGQVSNWLHNHANVGDVVKLVAPAG 250 (396)
T ss_dssp SCEEEEEECCTTCHHHHHHHHTCCTTCEEEEEEEEC
T ss_pred CeEEEEEEEcCCCcchHHHHhcCCCCCEEEEEcCCc
Confidence 4577777665 666799999999999653
No 119
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=21.34 E-value=1.5e+02 Score=18.26 Aligned_cols=25 Identities=0% Similarity=-0.189 Sum_probs=19.0
Q ss_pred EEEEEEeeCcccceecCCeEEEE-EEEEE
Q psy13876 13 HWILGLLRYWQNPTMLQNYCILH-GLFVC 40 (118)
Q Consensus 13 ~i~v~l~~dLvd~~~pGd~V~v~-Gi~~~ 40 (118)
+|.+.+-++. ++|||.|.|. |..+.
T Consensus 50 ~I~~tlW~~~---l~~Gdvv~i~ng~v~~ 75 (106)
T 2k75_A 50 RIRISSFGKQ---LQDSDVVRIDNARVAQ 75 (106)
T ss_dssp EEEEEEESSC---CCTTEEEEEEEEEEEE
T ss_pred eEEEEEEcCc---cCCCCEEEEEeeEEeE
Confidence 5677777776 9999999999 44443
No 120
>3i8t_A Galectin-4; S-type lectin, carbohydrate binding, molecular recognition, sugar binding protein; HET: LBT; 2.10A {Mus musculus} PDB: 2dyc_A
Probab=20.80 E-value=77 Score=21.36 Aligned_cols=22 Identities=9% Similarity=-0.013 Sum_probs=18.5
Q ss_pred EeeCcccceecCCeEEEEEEEE
Q psy13876 18 LLRYWQNPTMLQNYCILHGLFV 39 (118)
Q Consensus 18 l~~dLvd~~~pGd~V~v~Gi~~ 39 (118)
....+-+.++||+.|+|.|+..
T Consensus 31 y~~~ipggL~~G~~I~I~G~v~ 52 (164)
T 3i8t_A 31 YKRPIPGGLSVGMSVYIQGMAK 52 (164)
T ss_dssp EEEECTTCCCTTCEEEEEEEEC
T ss_pred eeeeCCCCCCCCCEEEEEEEEC
Confidence 4566778899999999999974
No 121
>2k14_A YUAF protein; NFED-like protein, cellular stress, unknown function; NMR {Bacillus subtilis}
Probab=20.61 E-value=60 Score=19.14 Aligned_cols=12 Identities=0% Similarity=0.033 Sum_probs=11.1
Q ss_pred eecCCeEEEEEE
Q psy13876 26 TMLQNYCILHGL 37 (118)
Q Consensus 26 ~~pGd~V~v~Gi 37 (118)
+.+|++|.|+++
T Consensus 60 i~~G~~V~Vv~v 71 (84)
T 2k14_A 60 ISYGTTVLVVDI 71 (84)
T ss_dssp BCSSCEEEEEEE
T ss_pred cCCCCEEEEEEE
Confidence 789999999997
No 122
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=20.52 E-value=64 Score=20.90 Aligned_cols=21 Identities=5% Similarity=-0.206 Sum_probs=16.8
Q ss_pred EEEEeeCcccceecCCeEEEE
Q psy13876 15 ILGLLRYWQNPTMLQNYCILH 35 (118)
Q Consensus 15 ~v~l~~dLvd~~~pGd~V~v~ 35 (118)
.+..++.-++.+.|||.|.+.
T Consensus 77 SIE~~~e~v~eA~~GdnVai~ 97 (116)
T 1xe1_A 77 RIERNREKVEFAIAGDRIGIS 97 (116)
T ss_dssp EEEETTEEESEEETTCEEEEE
T ss_pred EEEECCcCcCCcCCCCEEEEE
Confidence 566688889999999988764
No 123
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=20.45 E-value=48 Score=19.92 Aligned_cols=11 Identities=0% Similarity=0.196 Sum_probs=9.0
Q ss_pred ceecCCeEEEE
Q psy13876 25 PTMLQNYCILH 35 (118)
Q Consensus 25 ~~~pGd~V~v~ 35 (118)
.+.|||+|.|.
T Consensus 53 ~Il~GD~V~ve 63 (79)
T 3i4o_A 53 RILPEDRVVVE 63 (79)
T ss_dssp CCCTTCEEEEE
T ss_pred cCCCCCEEEEE
Confidence 47889999885
No 124
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=20.34 E-value=13 Score=22.03 Aligned_cols=12 Identities=42% Similarity=0.590 Sum_probs=9.4
Q ss_pred ccccCCCCCccE
Q psy13876 2 RIATGASMVGKH 13 (118)
Q Consensus 2 ~~~~~~g~~Pr~ 13 (118)
|||.|+|..+..
T Consensus 40 RIA~GSG~~v~e 51 (69)
T 1dul_A 40 RIAAGSGMQVQD 51 (69)
T ss_dssp HHHHHTTCCHHH
T ss_pred HHHccCCCCHHH
Confidence 889999887653
No 125
>2zjr_B 50S ribosomal protein L3; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.43.3.2 PDB: 1nwx_B* 1nwy_B* 1sm1_B* 1xbp_B* 2ogm_B* 2ogn_B* 2ogo_B* 2zjp_B* 2zjq_B 1nkw_B 3cf5_B* 3dll_B* 3pio_B* 3pip_B* 1pnu_B 1pny_B 1vor_E 1vou_E 1vow_E 1voy_E ...
Probab=20.21 E-value=55 Score=23.40 Aligned_cols=16 Identities=6% Similarity=-0.282 Sum_probs=14.1
Q ss_pred ccceecCCeEEEEEEE
Q psy13876 23 QNPTMLQNYCILHGLF 38 (118)
Q Consensus 23 vd~~~pGd~V~v~Gi~ 38 (118)
+|-+.+|+.|+|+|+=
T Consensus 93 v~~F~~G~~VDV~g~t 108 (211)
T 2zjr_B 93 VDIFAEGEKIDATGTS 108 (211)
T ss_dssp TTTSCTTCEEEEEEEC
T ss_pred hhhhcCCCceEEEEEE
Confidence 3779999999999994
No 126
>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5
Probab=20.19 E-value=1.2e+02 Score=23.03 Aligned_cols=36 Identities=17% Similarity=0.014 Sum_probs=25.3
Q ss_pred CccccC-CCCCccEEEEEEeeCcccceecCCeE------EEEEEEEE
Q psy13876 1 MRIATG-ASMVGKHWILGLLRYWQNPTMLQNYC------ILHGLFVC 40 (118)
Q Consensus 1 ~~~~~~-~g~~Pr~i~v~l~~dLvd~~~pGd~V------~v~Gi~~~ 40 (118)
||++.| .=.+|=+++| ..+ +.+++||+| .+.|++..
T Consensus 45 ~rl~~G~~wpiPi~L~v--~~~--~~l~~g~~v~L~~~g~~~a~l~v 87 (349)
T 1v47_A 45 MRLPTGEVWTIPILLQF--REK--PRVGPGNTVALLHGGERVALLHV 87 (349)
T ss_dssp SBCTTSCBCCSCCCEEE--SSC--CSCCTTCEEEEEETTEEEEEEEC
T ss_pred CcCCCCCCcCeEEEecC--Chh--hcCCCCCEEEEccCCeeEEEEEe
Confidence 788877 3346766666 444 889999999 45777653
No 127
>3r8s_D 50S ribosomal protein L3; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_B 1p86_B 1vs8_D 1vs6_D 2aw4_D 2awb_D 2gya_B 2gyc_B 1vt2_D 2i2v_D 2j28_D 2i2t_D* 2qao_D* 2qba_D* 2qbc_D* 2qbe_D 2qbg_D 2qbi_D* 2qbk_D* 2qov_D ...
Probab=20.08 E-value=61 Score=23.20 Aligned_cols=17 Identities=6% Similarity=-0.273 Sum_probs=13.9
Q ss_pred ccceecCCeEEEEEEEE
Q psy13876 23 QNPTMLQNYCILHGLFV 39 (118)
Q Consensus 23 vd~~~pGd~V~v~Gi~~ 39 (118)
+|-+.+|+.|+|+|+=+
T Consensus 98 v~~F~~G~~VDV~g~sK 114 (209)
T 3r8s_D 98 VELFADVKKVDVTGTSK 114 (209)
T ss_dssp GGGGGSCCEEEEEEECC
T ss_pred eeeEcCCCEEEEEEEEe
Confidence 36788999999999943
Done!