RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13876
(118 letters)
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA
replication, MCM complex, AAA+ Pro ATP-binding,
DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Length = 595
Score = 81.5 bits (202), Expect = 1e-19
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 46 LSDTYIEAQRIQCLSKALEDDKPAGTLSEEEMAELG----GDQFYSKLAASLAPEIYGHE 101
+ D Y++ I+ K L++ +SEE+ ++ ++ +S+AP IYGH
Sbjct: 246 VFDIYMKVSSIEVSQKVLDEVI----ISEEDEKKIKDLAKDPWIRDRIISSIAPSIYGHW 301
Query: 102 DVKKALLLLLVGGVDRS 118
++K+AL L L GGV +
Sbjct: 302 ELKEALALALFGGVPKV 318
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family;
helicase, MCM homolog, DNA replication, ATP-binding,
DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Length = 506
Score = 70.3 bits (172), Expect = 1e-15
Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
Query: 44 GLLSDTYIEAQRIQCLSKALEDDKPAGTLSEEEMA---ELGGDQFYSKLAASLAPEIYGH 100
G++ ++A + +D P E+ EL + A ++AP + G
Sbjct: 165 GIVRSATLDALEVHK-----KDPIPEVHPDPAELEEFRELADKDPLTTFARAIAP-LPGA 218
Query: 101 EDVKKALLLLLVGGVDRS 118
E+V K L L L V ++
Sbjct: 219 EEVGKMLALQLFSCVGKN 236
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.15
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 4/22 (18%)
Query: 52 EAQRIQCLSKALE----DDKPA 69
E Q ++ L +L+ D PA
Sbjct: 18 EKQALKKLQASLKLYADDSAPA 39
Score = 26.8 bits (58), Expect = 1.6
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 84 QFYSKLAASLAPEIYGHEDVKKALLL 109
Q KL ASL ++Y +D AL +
Sbjct: 20 QALKKLQASL--KLYA-DDSAPALAI 42
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.28
Identities = 23/142 (16%), Positives = 45/142 (31%), Gaps = 51/142 (35%)
Query: 15 ILGLLRYWQNPT-------MLQ-NYCILHGLF--VCSSPGLLSDTYIEA----------- 53
+ L Q +L+ NY L P +++ YIE
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 54 -----QRIQC---LSKALEDDKPAGTLSEEEMAELGGDQFYSK--LAASLAP-------- 95
R+Q L +AL + +PA + + + G K +A +
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG------KTWVALDVCLSYKVQCKM 180
Query: 96 --EIY----GHEDVKKALLLLL 111
+I+ + + + +L +L
Sbjct: 181 DFKIFWLNLKNCNSPETVLEML 202
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 27.0 bits (60), Expect = 1.2
Identities = 9/53 (16%), Positives = 18/53 (33%)
Query: 45 LLSDTYIEAQRIQCLSKALEDDKPAGTLSEEEMAELGGDQFYSKLAASLAPEI 97
+ + A K + P+G L+ E + G + S A ++
Sbjct: 5 SKAVEELSATECHQWYKKFMTECPSGQLTLYEFKQFFGLKNLSPSANKYVEQM 57
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 1.3
Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 22/92 (23%)
Query: 1 MRIATG---ASMVGKHWILGLLRYWQNPTMLQNYCILHGLFVCSSPGLLSDTYIEAQRIQ 57
+R+ +G +V I+ L W+ T + H + PG S +
Sbjct: 468 LRVLSGSISERIV--DCIIRLPVKWETTTQFK---ATH--ILDFGPGGAS-------GLG 513
Query: 58 CLSKALEDDK-----PAGTLSEEEMAELGGDQ 84
L+ +D AGTL + G Q
Sbjct: 514 VLTHRNKDGTGVRVIVAGTLDINPDDDYGFKQ 545
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein
protein complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 390
Score = 27.0 bits (59), Expect = 1.8
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 59 LSKALEDDKPAGTLSEEEMAELGG--DQFYSKLAASLAPEIYGHEDVKKAL 107
L++ L+D L++ + + ++FY + YG V KA
Sbjct: 253 LNEILKDPAVESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVLKAF 303
>2vgn_A DOM34; translation termination factor, protein biosynthesis,
translation regulation, cell division, mRNA degradation;
2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2
d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Length = 386
Score = 26.2 bits (57), Expect = 3.2
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 59 LSKALEDDKPAGTLSEEEMAELGG--DQFYSKLAASLAPEIYGHEDVKKAL 107
+++ L++ A L + + ++ D+F L YG ++V KA
Sbjct: 259 INEVLKNPLYASKLQDTKYSKEIMVMDEFLLHLNKDDDKAWYGEKEVVKAA 309
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus
solfataricus}
Length = 364
Score = 25.9 bits (56), Expect = 4.2
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 59 LSKALEDDKPAGTLSEEEMAELGG--DQFYSKLAASLAPEIYGHEDVKKAL 107
L + L+ D +++ E+A ++ LA YG E VK A+
Sbjct: 247 LHEVLKRDIIDKIMTDYEIAIGAKKMEKAMELLAKQPELVTYGLEQVKNAI 297
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A
{Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Length = 279
Score = 25.7 bits (57), Expect = 4.2
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 12/51 (23%)
Query: 48 DTYIEAQRIQCLSKALEDDKPAGTLSEEEMAELGGDQFYSKLAASLAPEIY 98
+I + L + E+ + +SEE+ ++ +LA P IY
Sbjct: 236 KNFIYGNYTEFLEQEFEELQ----ISEEDEEKI------KELAGD--PNIY 274
>3bpq_A Antitoxin RELB3, RELB; protein toxin-antitoxin complex; 2.20A
{Methanocaldococcus jannaschii}
Length = 52
Score = 24.2 bits (52), Expect = 4.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 58 CLSKALEDDKPAGTLSEEEMAELGGD 83
L+KA+E+ K L+ +E+ EL GD
Sbjct: 27 GLAKAMEETKDDELLTYDEIKELLGD 52
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 25.5 bits (56), Expect = 4.9
Identities = 8/53 (15%), Positives = 17/53 (32%)
Query: 45 LLSDTYIEAQRIQCLSKALEDDKPAGTLSEEEMAELGGDQFYSKLAASLAPEI 97
+ Q + + P+G + E L G Q ++ A ++
Sbjct: 10 AGDQKAVPTQETHVWYRTFMMEYPSGLQTLHEFKTLLGLQGLNQKANKHIDQV 62
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 25.3 bits (56), Expect = 5.8
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 72 LSEEEMAELGGDQ-FYSKLAASLAPEIYGHEDVKKALLLLLVGGVD 116
L+ + +Q + L E E ++A+LL L
Sbjct: 222 LTPSGLDRKPREQSWLGSYVKQLQDEGIDAEMQRRAMLLQLWVTQG 267
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 25.5 bits (56), Expect = 5.8
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Query: 96 EIYGHEDVKKALLLLLV----GGV 115
I G ED+K ALLL V GGV
Sbjct: 25 AIVGQEDMKLALLLTAVDPGIGGV 48
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 24.9 bits (54), Expect = 7.9
Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Query: 45 LLSDTYIEAQRIQCLSKALEDDKPAGTLSEEEMAELGGDQFYSKLAASLAPEIYGH 100
L +T + + ++ D P G +++++ Y+K P+ Y
Sbjct: 24 LQLNTKFSEEELCSWYQSFLKDCPTGRITQQQFQ-----SIYAKFFPDTDPKAYAQ 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.411
Gapped
Lambda K H
0.267 0.0507 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,838,208
Number of extensions: 96468
Number of successful extensions: 255
Number of sequences better than 10.0: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 24
Length of query: 118
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 37
Effective length of database: 4,440,192
Effective search space: 164287104
Effective search space used: 164287104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)