RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13876
         (118 letters)



>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
           {Rhodobacter capsulatus [TaxId: 1061]}
          Length = 333

 Score = 27.6 bits (60), Expect = 0.32
 Identities = 10/18 (55%), Positives = 11/18 (61%)

Query: 95  PEIYGHEDVKKALLLLLV 112
             I G ED+K ALLL  V
Sbjct: 7   SAIVGQEDMKLALLLTAV 24


>d1ub4a_ b.34.6.2 (A:) MazF protein {Escherichia coli [TaxId: 562]}
          Length = 110

 Score = 26.8 bits (59), Expect = 0.33
 Identities = 7/38 (18%), Positives = 16/38 (42%)

Query: 43  PGLLSDTYIEAQRIQCLSKALEDDKPAGTLSEEEMAEL 80
            G   D    A +++ ++         GT++ EE+  +
Sbjct: 64  SGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLI 101


>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 201

 Score = 27.1 bits (59), Expect = 0.42
 Identities = 8/61 (13%), Positives = 22/61 (36%)

Query: 45  LLSDTYIEAQRIQCLSKALEDDKPAGTLSEEEMAELGGDQFYSKLAASLAPEIYGHEDVK 104
           L  +T    + +    ++   + P+G ++ +E   +    F      + A  ++   D  
Sbjct: 16  LQLNTKFTEEELSSWYQSFLKECPSGRITRQEFQTIYSKFFPEADPKAYAQHVFRSFDAN 75

Query: 105 K 105
            
Sbjct: 76  S 76


>d1m1fa_ b.34.6.2 (A:) Kid toxin protein (ParD) {Plasmid R1, from
           Escherichia coli [TaxId: 2482]}
          Length = 110

 Score = 26.1 bits (57), Expect = 0.69
 Identities = 5/38 (13%), Positives = 13/38 (34%)

Query: 43  PGLLSDTYIEAQRIQCLSKALEDDKPAGTLSEEEMAEL 80
            G+ +   +   + + +       K    + E  M E+
Sbjct: 64  VGIRTTGVVRCDQPRTIDMKARGGKRLERVPETIMNEV 101


>d1e4cp_ c.74.1.1 (P:) L-fuculose-1-phosphate aldolase {Escherichia
           coli [TaxId: 562]}
          Length = 206

 Score = 26.0 bits (56), Expect = 1.3
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 6/56 (10%)

Query: 29  QNYCILHGLFVCS-SPG---LLSDTYIEAQRIQCLSKALEDDKPAGTLSEEEMAEL 80
                 HGL  C  +      L+       ++   + A+    P   LS+EE+A +
Sbjct: 149 ATLLQHHGLIACEVNLEKALWLAHEVEVLAQLYLTTLAI--TDPVPVLSDEEIAVV 202


>d1aqta1 a.2.10.1 (A:87-136) Epsilon subunit of F1F0-ATP synthase
          C-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 50

 Score = 22.6 bits (49), Expect = 4.6
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 4/35 (11%)

Query: 60 SKALEDDKPAGTLSEEEMAELGGDQFYSKLAASLA 94
          ++A+E    A   +EE ++   GD  Y++ +A LA
Sbjct: 6  ARAME----AKRKAEEHISSSHGDVDYAQASAELA 36


>d1frba_ c.1.7.1 (A:) FR-1 (fibroblast growth factor-induced)
           protein {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 315

 Score = 23.8 bits (50), Expect = 7.0
 Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 2/32 (6%)

Query: 71  TLSEEEMAELGGDQFYSKLAASLAPEIYGHED 102
            LS+EEMA +    F     A L PE    E+
Sbjct: 279 QLSDEEMATI--LSFNRNWRACLLPETVNMEE 308


>d2bh1x1 d.52.10.1 (X:14-81) General secretion pathway protein E,
          EpsE {Vibrio cholerae [TaxId: 666]}
          Length = 68

 Score = 22.3 bits (48), Expect = 9.5
 Identities = 3/22 (13%), Positives = 8/22 (36%)

Query: 35 HGLFVCSSPGLLSDTYIEAQRI 56
              +     L  +  +E +R+
Sbjct: 23 SQASIYYLAPLSMEALVETKRV 44


>d2qi2a3 d.79.3.2 (A:244-338) Cell division protein pelota
           {Thermoplasma acidophilum [TaxId: 2303]}
          Length = 95

 Score = 22.7 bits (49), Expect = 9.5
 Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 2/25 (8%)

Query: 83  DQFYSKLAASLAPEIYGHEDVKKAL 107
           D+F   +   +   +YG +  + AL
Sbjct: 12  DEFLVAVKKDMG--VYGRDQTESAL 34


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0690    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 439,565
Number of extensions: 17783
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 15
Length of query: 118
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 44
Effective length of database: 1,391,576
Effective search space: 61229344
Effective search space used: 61229344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)