BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13877
(114 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1L5J|A Chain A, Crystal Structure Of E. Coli Aconitase B.
pdb|1L5J|B Chain B, Crystal Structure Of E. Coli Aconitase B
Length = 865
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 32 KVQEHTSNQPLQMGSSPAQVVKLTNPPVQTGQKMIVLTNNSNPPALEEKKF 82
+ E + +PL A V L NPP + ++ L N PP ++E +
Sbjct: 12 RAAEGIAPKPLDANQMAALVELLKNPPAGEEEFLLDLLTNRVPPGVDEAAY 62
>pdb|4DQD|A Chain A, The Crystal Structure Of A Transporter In Complex With
3-Phenylpyruvic Acid
Length = 363
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 76 ALEEKKFDRGIYNNEGLIASKLMKKGGQD 104
AL E+ F IY G+ + +K GG+D
Sbjct: 210 ALRERGFKGAIYQTHGVATEEFIKLGGKD 238
>pdb|3SG0|A Chain A, The Crystal Structure Of An Extracellular Ligand-Binding
Receptor From Rhodopseudomonas Palustris Haa2
Length = 386
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 76 ALEEKKFDRGIYNNEGLIASKLMKKGGQD 104
AL E+ F IY G+ + +K GG+D
Sbjct: 233 ALRERGFKGAIYQTHGVATEEFIKLGGKD 261
>pdb|1OI2|A Chain A, X-Ray Structure Of The Dihydroxyacetone Kinase From
Escherichia Coli
pdb|1OI2|B Chain B, X-Ray Structure Of The Dihydroxyacetone Kinase From
Escherichia Coli
pdb|1OI3|A Chain A, X-Ray Structure Of The Dihydroxyacetone Kinase From
Escherichia Coli
pdb|1OI3|B Chain B, X-Ray Structure Of The Dihydroxyacetone Kinase From
Escherichia Coli
pdb|1UOD|A Chain A, Crystal Structure Of The Dihydroxyacetone Kinase From E.
Coli In Complex With Dihydroxyacetone-Phosphate
pdb|1UOD|B Chain B, Crystal Structure Of The Dihydroxyacetone Kinase From E.
Coli In Complex With Dihydroxyacetone-Phosphate
Length = 366
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 55 TNPPVQTGQKMIVLTNNSNPPALEEKKFDRGIYN 88
T P+Q+G ++I L NN L E G+YN
Sbjct: 278 TKQPLQSGDRVIALVNNLGATPLSEL---YGVYN 308
>pdb|1UOE|A Chain A, Crystal Structure Of The Dihydroxyacetone Kinase From E.
Coli In Complex With Glyceraldehyde
pdb|1UOE|B Chain B, Crystal Structure Of The Dihydroxyacetone Kinase From E.
Coli In Complex With Glyceraldehyde
Length = 366
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 55 TNPPVQTGQKMIVLTNNSNPPALEEKKFDRGIYN 88
T P+Q+G ++I L NN L E G+YN
Sbjct: 278 TKQPLQSGDRVIALVNNLGATPLSEL---YGVYN 308
>pdb|3PNM|A Chain A, Crystal Structure Of E.Coli Dha Kinase Dhak (H56a)
pdb|3PNM|B Chain B, Crystal Structure Of E.Coli Dha Kinase Dhak (H56a)
pdb|3PNM|C Chain C, Crystal Structure Of E.Coli Dha Kinase Dhak (H56a)
pdb|3PNM|D Chain D, Crystal Structure Of E.Coli Dha Kinase Dhak (H56a)
Length = 357
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 55 TNPPVQTGQKMIVLTNNSNPPALEEKKFDRGIYN 88
T P+Q+G ++I L NN L E G+YN
Sbjct: 269 TKQPLQSGDRVIALVNNLGATPLSEL---YGVYN 299
>pdb|3PNK|A Chain A, Crystal Structure Of E.Coli Dha Kinase Dhak
pdb|3PNK|B Chain B, Crystal Structure Of E.Coli Dha Kinase Dhak
pdb|3PNL|A Chain A, Crystal Structure Of E.coli Dha Kinase Dhak-dhal Complex
Length = 357
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 55 TNPPVQTGQKMIVLTNNSNPPALEEKKFDRGIYN 88
T P+Q+G ++I L NN L E G+YN
Sbjct: 269 TKQPLQSGDRVIALVNNLGATPLSEL---YGVYN 299
>pdb|3PNO|A Chain A, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n)
pdb|3PNO|B Chain B, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n)
pdb|3PNO|C Chain C, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n)
pdb|3PNO|D Chain D, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n)
pdb|3PNQ|A Chain A, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n) Complex
With Dha
pdb|3PNQ|B Chain B, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n) Complex
With Dha
pdb|3PNQ|C Chain C, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n) Complex
With Dha
pdb|3PNQ|D Chain D, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n) Complex
With Dha
Length = 357
Score = 25.8 bits (55), Expect = 7.3, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 55 TNPPVQTGQKMIVLTNNSNPPALEEKKFDRGIYN 88
T P+Q+G ++I L NN L E G+YN
Sbjct: 269 TKQPLQSGDRVIALVNNLGATPLSEL---YGVYN 299
>pdb|2BKA|A Chain A, Cc3(Tip30)crystal Strucure
Length = 242
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 10 NKSGGRLYLQTRGSKFVKFQELKVQEHTSNQP 41
+KS LYLQ +G K +ELK ++ +P
Sbjct: 136 DKSSNFLYLQVKGEVEAKVEELKFDRYSVFRP 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.128 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,374,257
Number of Sequences: 62578
Number of extensions: 117477
Number of successful extensions: 204
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 200
Number of HSP's gapped (non-prelim): 11
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)