BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13877
(114 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NX31|MCM7_XENTR DNA replication licensing factor mcm7 OS=Xenopus tropicalis GN=mcm7
PE=2 SV=1
Length = 720
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 31/42 (73%), Positives = 37/42 (88%)
Query: 1 MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPL 42
MCPS +CQ N+SGGRLYLQTRGSKF+KFQELK+QEH+ P+
Sbjct: 204 MCPSRECQTNRSGGRLYLQTRGSKFIKFQELKIQEHSDQVPV 245
>sp|Q91876|MCM7A_XENLA DNA replication licensing factor mcm7-A OS=Xenopus laevis GN=mcm7-a
PE=1 SV=2
Length = 720
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 31/42 (73%), Positives = 37/42 (88%)
Query: 1 MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPL 42
MCPS +CQ N+SGGRLYLQTRGSKF+KFQELK+QEH+ P+
Sbjct: 204 MCPSRECQTNRSGGRLYLQTRGSKFIKFQELKIQEHSDQVPV 245
>sp|Q7ZXB1|MCM7B_XENLA DNA replication licensing factor mcm7-B OS=Xenopus laevis GN=mcm7-b
PE=2 SV=1
Length = 720
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 31/42 (73%), Positives = 37/42 (88%)
Query: 1 MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPL 42
MCPS +CQ N+SGGRLYLQTRGSKF+KFQELK+QEH+ P+
Sbjct: 204 MCPSRECQTNRSGGRLYLQTRGSKFIKFQELKIQEHSDQVPV 245
>sp|Q3ZBH9|MCM7_BOVIN DNA replication licensing factor MCM7 OS=Bos taurus GN=MCM7 PE=2
SV=1
Length = 719
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 43/55 (78%), Gaps = 2/55 (3%)
Query: 1 MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQMGSSPAQVVKLT 55
MCPS++CQ N+SGGRLYLQTRGSKF+KFQE+K+QEH+ P+ G+ P + L
Sbjct: 205 MCPSQECQTNRSGGRLYLQTRGSKFIKFQEMKMQEHSDQVPV--GNIPRSITVLV 257
>sp|Q9XYU0|MCM7_DROME DNA replication licensing factor Mcm7 OS=Drosophila melanogaster
GN=Mcm7 PE=1 SV=1
Length = 720
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 31/41 (75%), Positives = 38/41 (92%)
Query: 2 CPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPL 42
CPS+DC+VNK+GGRLYLQTRGSKFVKFQE+K+QEH+ P+
Sbjct: 206 CPSDDCRVNKAGGRLYLQTRGSKFVKFQEVKMQEHSDQVPV 246
>sp|P33993|MCM7_HUMAN DNA replication licensing factor MCM7 OS=Homo sapiens GN=MCM7 PE=1
SV=4
Length = 719
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 43/55 (78%), Gaps = 2/55 (3%)
Query: 1 MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQMGSSPAQVVKLT 55
MCPS++CQ N+SGGRLYLQTRGS+F+KFQE+K+QEH+ P+ G+ P + L
Sbjct: 205 MCPSQECQTNRSGGRLYLQTRGSRFIKFQEMKMQEHSDQVPV--GNIPRSITVLV 257
>sp|Q61881|MCM7_MOUSE DNA replication licensing factor MCM7 OS=Mus musculus GN=Mcm7 PE=2
SV=1
Length = 719
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/42 (73%), Positives = 38/42 (90%)
Query: 1 MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPL 42
MCPS++CQ N+SGGRLYLQTRGSKFVKFQE+K+QEH+ P+
Sbjct: 205 MCPSQECQTNRSGGRLYLQTRGSKFVKFQEMKIQEHSDQVPV 246
>sp|O75001|MCM7_SCHPO DNA replication licensing factor mcm7 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mcm7 PE=1 SV=1
Length = 760
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 32/41 (78%)
Query: 2 CPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPL 42
CPS++C+ N + G+L++ TR SKF+ FQE+K+QE T+ P+
Sbjct: 227 CPSDECKKNDAKGQLFMSTRASKFLPFQEVKIQELTNQVPI 267
>sp|P38132|MCM7_YEAST DNA replication licensing factor MCM7 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MCM7 PE=1 SV=4
Length = 845
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 2 CPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPL 42
C SE+C N++ G+L++ TR SKF FQE K+QE + P+
Sbjct: 284 CTSEECSQNQTKGQLFMSTRASKFSAFQECKIQELSQQVPV 324
>sp|P43299|PROL_ARATH Protein PROLIFERA OS=Arabidopsis thaliana GN=PRL PE=1 SV=2
Length = 716
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 2 CPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQP 41
CPS C++N G LQ R SKF+KFQE K+QE + P
Sbjct: 200 CPSSRCRLNSKAGNPILQLRASKFLKFQEAKMQELAEHVP 239
>sp|A4SM99|UBIG_AERS4 3-demethylubiquinone-9 3-methyltransferase OS=Aeromonas salmonicida
(strain A449) GN=ubiG PE=3 SV=1
Length = 238
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 19/105 (18%)
Query: 14 GRLYLQTRGSKFVKFQELKVQEHTSNQP-----------LQMGSSPAQVVKLTNPPVQTG 62
RL+ +G + +++Q++ +EH S P L+ PA V++ V+ G
Sbjct: 89 ARLHALEQGVE-LQYQQMTAEEHASQTPDQYDVVTCMEMLEHVPDPASVLRAIATLVRPG 147
Query: 63 QKMIVLTNNSNPPALEEKKFDRGIYNNEGLIASKLMKKGGQDRRK 107
++ + T N NP K + I E L+ K++ KG D +K
Sbjct: 148 GRVFISTINRNP-----KAYLMMIIGAEYLM--KMVPKGTHDHKK 185
>sp|P15822|ZEP1_HUMAN Zinc finger protein 40 OS=Homo sapiens GN=HIVEP1 PE=1 SV=3
Length = 2718
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 45 GSSPAQVVKLTNPPVQTGQKMIVLTNNSNPPALE---EKKFDRGIYNNEGLIASKLMKKG 101
G S A V T + TG+K ++L PP E++ + I +NE L+ K +
Sbjct: 708 GPSAALVTTSTPSALPTGEKALLLPGQMRPPLATKTLEERISKLISDNEALVDDKQL--- 764
Query: 102 GQDRRKPERTS 112
D KP RTS
Sbjct: 765 --DSVKPRRTS 773
>sp|A5FR82|RSMG_DEHSB Ribosomal RNA small subunit methyltransferase G OS=Dehalococcoides
sp. (strain BAV1) GN=rsmG PE=3 SV=2
Length = 235
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 43 QMGSSPAQVVKLTNPPVQTGQKMIVLTNNSNPPAL 77
+MG +V+K+ P ++ G+K+++L SN PAL
Sbjct: 187 KMGGRVFKVIKVELPGLEDGRKLVLLEKISNTPAL 221
>sp|Q3ZXE0|RSMG_DEHSC Ribosomal RNA small subunit methyltransferase G OS=Dehalococcoides
sp. (strain CBDB1) GN=rsmG PE=3 SV=1
Length = 235
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 43 QMGSSPAQVVKLTNPPVQTGQKMIVLTNNSNPPAL 77
+MG +V+K+ P ++ G+K+++L SN PAL
Sbjct: 187 KMGGRVFKVIKVELPGLEDGRKLVLLEKISNTPAL 221
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.128 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,721,837
Number of Sequences: 539616
Number of extensions: 1620544
Number of successful extensions: 2643
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2629
Number of HSP's gapped (non-prelim): 21
length of query: 114
length of database: 191,569,459
effective HSP length: 82
effective length of query: 32
effective length of database: 147,320,947
effective search space: 4714270304
effective search space used: 4714270304
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)