Query psy13877
Match_columns 114
No_of_seqs 122 out of 341
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 22:41:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13877.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13877hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vl6_A SSO MCM N-TER, minichro 99.7 2.7E-17 9.2E-22 128.1 4.0 64 11-74 175-264 (268)
2 1ltl_A DNA replication initiat 99.6 2E-16 6.7E-21 124.5 5.6 69 2-76 159-248 (279)
3 3f9v_A Minichromosome maintena 99.4 9.3E-14 3.2E-18 118.7 5.3 51 11-61 169-237 (595)
4 3f8t_A Predicted ATPase involv 99.1 4.9E-12 1.7E-16 109.0 -2.0 52 5-56 91-165 (506)
5 3jxo_A TRKA-N domain protein; 34.9 24 0.00081 21.5 2.2 17 40-56 54-71 (86)
6 3zxf_A Galectin-7; sugar bindi 32.3 37 0.0013 23.4 3.1 28 40-69 12-41 (138)
7 1xc0_A Pardaxin P-4, PA4; BEND 31.0 16 0.00053 20.6 0.7 12 93-104 22-33 (33)
8 3nv1_A Galectin-9, galectin 9 30.0 48 0.0016 22.8 3.4 29 40-70 14-44 (138)
9 3zsj_A Galectin-3; sugar bindi 29.8 44 0.0015 23.0 3.1 23 40-64 10-34 (138)
10 3mxn_B RECQ-mediated genome in 25.1 2E+02 0.0068 21.1 6.1 45 35-80 87-136 (150)
11 3b9c_A HSPC159; beta sandwich, 24.9 69 0.0024 22.3 3.5 20 39-60 15-35 (144)
12 4ayb_H DNA-directed RNA polyme 24.5 39 0.0013 22.4 1.9 15 45-59 56-70 (84)
13 3i8t_A Galectin-4; S-type lect 23.6 70 0.0024 22.9 3.4 25 46-70 39-65 (164)
14 3ap9_A Galectin-8; beta-sandwi 22.5 91 0.0031 21.8 3.7 18 40-59 23-41 (154)
15 3pjy_A Hypothetical signal pep 21.9 25 0.00084 24.9 0.6 11 45-55 117-127 (136)
16 2z0t_A Putative uncharacterize 21.5 14 0.00049 25.5 -0.7 22 45-66 33-63 (109)
17 2gpj_A Siderophore-interacting 21.2 40 0.0014 24.7 1.7 33 45-77 90-127 (252)
18 1k0h_A Gpfii; twisted beta-san 21.0 65 0.0022 22.1 2.6 30 45-75 74-111 (117)
19 3mcq_A Thiamine-monophosphate 21.0 58 0.002 25.0 2.6 20 39-58 139-158 (319)
20 2d6m_A Galectin-9, lectin, gal 20.6 98 0.0033 21.8 3.6 29 40-70 23-53 (159)
21 1rws_A Hypothetical protein PF 20.3 26 0.0009 21.7 0.4 25 20-44 6-31 (77)
22 1eik_A RNA polymerase subunit 20.3 67 0.0023 21.1 2.4 17 45-61 50-66 (77)
No 1
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=99.66 E-value=2.7e-17 Score=128.14 Aligned_cols=64 Identities=17% Similarity=0.258 Sum_probs=54.3
Q ss_pred CCccceEEEecCceeeeceEeeeeccCCCCCCCC---------------CCCCCcEEEEEc---CCCCcc--------ee
Q psy13877 11 KSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQM---------------GSSPAQVVKLTN---PPVQTG--------QK 64 (114)
Q Consensus 11 ~s~G~l~L~~r~SkF~dfQeVrIQE~peeVP~G~---------------~~kPGD~V~lTG---p~p~tg--------f~ 64 (114)
+++|+|.++.+.|+|+|||+|||||+|+++|.|+ .|+|||+|+||| +.|+.+ |+
T Consensus 175 ~~~~~~~l~~~~s~f~D~Q~ikiQE~pe~vp~G~~Prsi~v~l~~dLvd~~~PGDrV~vtGI~~~~~~~~~~~~~~~~~~ 254 (268)
T 2vl6_A 175 GKPGQFRLIPEKTKLIDWQKAVIQERPEEVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQDSPVKRGSRAVFD 254 (268)
T ss_dssp CCBCEEEECGGGCEEEEEEEEEEECCGGGSCTTSCCCEEEEEEEGGGTTSSCTTCEEEEEEEEEEECSSTTCCSSCCEEE
T ss_pred CCCCCEEEecCccEEEeeEEEEEEeCCCCCCCCCCCcEEEEEEccCccCcccCCCEEEEEEEEEEeecccccCCCceEEE
Confidence 6778999999999999999999999999999999 689999999999 444432 66
Q ss_pred eeeecCCCCC
Q psy13877 65 MIVLTNNSNP 74 (114)
Q Consensus 65 a~~l~n~v~~ 74 (114)
..+.+|+|..
T Consensus 255 ~yl~an~I~~ 264 (268)
T 2vl6_A 255 IYMKVSSIEV 264 (268)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEE
Confidence 7777776643
No 2
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=99.63 E-value=2e-16 Score=124.53 Aligned_cols=69 Identities=23% Similarity=0.305 Sum_probs=58.2
Q ss_pred CCcccccCCCCccceEEEecCceeeeceEeeeeccCCCCCCCC---------------CCCCCcEEEEEc---CCCC---
Q psy13877 2 CPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQM---------------GSSPAQVVKLTN---PPVQ--- 60 (114)
Q Consensus 2 Cps~~C~~n~s~G~l~L~~r~SkF~dfQeVrIQE~peeVP~G~---------------~~kPGD~V~lTG---p~p~--- 60 (114)
||+ | +++| |.++.+.|+|+|||+|+|||+|+++|.|+ .++|||+|+||| +.+.
T Consensus 159 Cp~--C---~~~~-f~l~~~~s~f~D~Q~ikiQE~pe~vp~G~~Prsi~V~l~~dLvd~~~PGDrV~vtGI~~~~~~~~~ 232 (279)
T 1ltl_A 159 CSE--C---GGRS-FRLLQDESEFLDTQTLKLQEPLENLSGGEQPRQITVVLEDDLVDTLTPGDIVRVTGTLRTVRDERT 232 (279)
T ss_dssp CTT--T---CCCC-EEECGGGCEEEEEEEEEEECCSTTCCSSCCCCEEEEEEEGGGTTCCCTTCEEEEEEEEEEEEETTT
T ss_pred CCC--C---CCCC-cEEeccccEEEeeEEEEEecCcccCCCCCCCeEEEEEEcccccCccCCCCEEEEEEEEEEeeCCCC
Confidence 665 7 5667 99999999999999999999999999999 689999999999 3332
Q ss_pred cceeeeeecCCCCCcc
Q psy13877 61 TGQKMIVLTNNSNPPA 76 (114)
Q Consensus 61 tgf~a~~l~n~v~~~~ 76 (114)
.-|+..+.+|+|....
T Consensus 233 ~~~~~~l~a~~I~~~~ 248 (279)
T 1ltl_A 233 KRFKNFIYGNYTEFLE 248 (279)
T ss_dssp TEEEEEEEEEECCBC-
T ss_pred ceEEEEEEEEEEEEec
Confidence 2289999999887654
No 3
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.42 E-value=9.3e-14 Score=118.67 Aligned_cols=51 Identities=22% Similarity=0.345 Sum_probs=46.6
Q ss_pred CCccceEEEecCceeeeceEeeeeccCCCCCCCC---------------CCCCCcEEEEEc---CCCCc
Q psy13877 11 KSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQM---------------GSSPAQVVKLTN---PPVQT 61 (114)
Q Consensus 11 ~s~G~l~L~~r~SkF~dfQeVrIQE~peeVP~G~---------------~~kPGD~V~lTG---p~p~t 61 (114)
+++|+|.++.+.|+|+|||+|+|||+|+++|.|+ .++|||+|.||| +.++.
T Consensus 169 ~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~~~~g~~pr~~~v~l~~dlv~~~~pGd~v~v~Gi~~~~~~~ 237 (595)
T 3f9v_A 169 GKPGQFRLIPEKTKLIDWQKAVIQERPEEVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQDS 237 (595)
T ss_dssp CCCSEEECCSTTCEEEEEEEEEEECCTTTSCTTSCCCEEEEEEEGGGTTCSCSSCEEEEEEECCCCCSS
T ss_pred CCCCceEEeccCceeeeeEEEEEEeccccCCCCCCCceEEEEEecccccccccCCEEEEEEEEEecccc
Confidence 6778999999999999999999999999999999 689999999999 55554
No 4
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.08 E-value=4.9e-12 Score=108.98 Aligned_cols=52 Identities=8% Similarity=-0.059 Sum_probs=48.5
Q ss_pred ccccCCCCccceEEEecCcee--eeceEeeeeccCCCCCCCC---------------------CCCCCcEEEEEc
Q psy13877 5 EDCQVNKSGGRLYLQTRGSKF--VKFQELKVQEHTSNQPLQM---------------------GSSPAQVVKLTN 56 (114)
Q Consensus 5 ~~C~~n~s~G~l~L~~r~SkF--~dfQeVrIQE~peeVP~G~---------------------~~kPGD~V~lTG 56 (114)
+.|..|+++|.|+++++.+|| +|||+|+|||+|+++|.|+ .|+|||+|.|+|
T Consensus 91 ~~~~~~~~~g~~~~~~r~~k~~~~d~Q~IkiQE~pe~~~~G~~Prsi~v~l~~dLvd~~~~~~~~~pGd~V~v~G 165 (506)
T 3f8t_A 91 DVEPRVRFRGLPHRFRRVERIRPMDGALISIEGVVREVRGAERLEHAIVDTGSELVAVRLHGHRLGPGLRVEILG 165 (506)
T ss_dssp TSCCCEEEECCCGGGSSCSCCGGGTTCEEEEEEEEEEEEESSSEEEEEEECSSSEEEEECTTCCCCTTCEEEEEE
T ss_pred CCCcccccCCcccccchHhhccccccEEEEEecCcccCCCCCCCceEEEEecccccCcccccccccCCCEEEEEE
Confidence 458888999999999999997 9999999999999999999 489999999999
No 5
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=34.86 E-value=24 Score=21.54 Aligned_cols=17 Identities=6% Similarity=-0.115 Sum_probs=14.1
Q ss_pred CCCCC-CCCCCcEEEEEc
Q psy13877 40 QPLQM-GSSPAQVVKLTN 56 (114)
Q Consensus 40 VP~G~-~~kPGD~V~lTG 56 (114)
+|.++ .+++||++.+.|
T Consensus 54 ~p~~~~~l~~GD~l~v~g 71 (86)
T 3jxo_A 54 VPRGDTEILSGDKLYVIV 71 (86)
T ss_dssp CCCTTCBCCTTCEEEEEE
T ss_pred CCCCCCEECCCCEEEEEE
Confidence 46666 689999999998
No 6
>3zxf_A Galectin-7; sugar binding protein; 1.38A {Homo sapiens} SCOP: b.29.1.3 PDB: 1bkz_A 2gal_A* 3gal_A* 4gal_A* 5gal_A* 3zxe_A*
Probab=32.32 E-value=37 Score=23.38 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=18.3
Q ss_pred CCCCCCCCCCcEEEEEc-CCCCc-ceeeeeec
Q psy13877 40 QPLQMGSSPAQVVKLTN-PPVQT-GQKMIVLT 69 (114)
Q Consensus 40 VP~G~~~kPGD~V~lTG-p~p~t-gf~a~~l~ 69 (114)
+|.| ++||+.|+|.| +.+.. .|.--..+
T Consensus 12 i~~g--l~~G~~i~I~G~v~~~a~rF~Inl~~ 41 (138)
T 3zxf_A 12 LPEG--IRPGTVLRIRGLVPPNASRFHVNLLC 41 (138)
T ss_dssp CTTC--CCSSEEEEEEEEECTTCCBEEEEEES
T ss_pred cCCC--CCCCCEEEEEEEECCCCCEEEEEeee
Confidence 5555 99999999999 44333 45433333
No 7
>1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} SCOP: j.6.1.1 PDB: 2kns_A
Probab=30.95 E-value=16 Score=20.61 Aligned_cols=12 Identities=42% Similarity=0.745 Sum_probs=9.8
Q ss_pred chhhhhhhCCCC
Q psy13877 93 IASKLMKKGGQD 104 (114)
Q Consensus 93 ~~~~~~~~~~~~ 104 (114)
.|++|-++|||.
T Consensus 22 vgsalsssggqe 33 (33)
T 1xc0_A 22 VGSALSSSGGQE 33 (33)
T ss_dssp HHHHTTTTTTCC
T ss_pred HHHHhhcccCCC
Confidence 578899999984
No 8
>3nv1_A Galectin-9, galectin 9 short isoform variant; sugar binding, sugar binding protein; 1.50A {Homo sapiens} SCOP: b.29.1.0 PDB: 3nv2_A* 3nv3_A* 3nv4_A*
Probab=30.02 E-value=48 Score=22.83 Aligned_cols=29 Identities=7% Similarity=-0.047 Sum_probs=18.6
Q ss_pred CCCCCCCCCCcEEEEEc-CCCC-cceeeeeecC
Q psy13877 40 QPLQMGSSPAQVVKLTN-PPVQ-TGQKMIVLTN 70 (114)
Q Consensus 40 VP~G~~~kPGD~V~lTG-p~p~-tgf~a~~l~n 70 (114)
||.| ++||+.|+|.| +.+. ..|..-..++
T Consensus 14 i~~g--l~~G~~i~I~G~v~~~~~~F~Inl~~~ 44 (138)
T 3nv1_A 14 ILGG--LYPSKSILLSGTVLPSAQRFHINLCSG 44 (138)
T ss_dssp CTTC--CCTTCEEEEEEEECTTCCBEEEEEEET
T ss_pred CCCC--CCCCCEEEEEEEECCCCCEEEEEcCcC
Confidence 4555 89999999999 4332 3454433343
No 9
>3zsj_A Galectin-3; sugar binding protein; HET: LAT; 0.86A {Homo sapiens} SCOP: b.29.1.3 PDB: 2nmn_A* 2nn8_A* 2nmo_A* 3t1m_A* 3t1l_A* 1kjl_A* 1kjr_A* 1a3k_A* 2xg3_A* 3zsk_A 3zsl_A 3zsm_A 3ayc_A* 3aya_A* 3ayd_A* 3aye_A*
Probab=29.83 E-value=44 Score=23.03 Aligned_cols=23 Identities=9% Similarity=0.079 Sum_probs=16.2
Q ss_pred CCCCCCCCCCcEEEEEc-CCCCc-cee
Q psy13877 40 QPLQMGSSPAQVVKLTN-PPVQT-GQK 64 (114)
Q Consensus 40 VP~G~~~kPGD~V~lTG-p~p~t-gf~ 64 (114)
+|.| +.||+.|+|.| +.+.. .|.
T Consensus 10 i~~g--l~~G~~i~I~G~v~~~a~rF~ 34 (138)
T 3zsj_A 10 LPGG--VVPRMLITILGTVKPNANRIA 34 (138)
T ss_dssp CTTC--CCTTEEEEEEEEECTTCCBEE
T ss_pred cCCC--CCCCCEEEEEEEECCCCCEEE
Confidence 5555 89999999999 44333 343
No 10
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=25.05 E-value=2e+02 Score=21.15 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=32.6
Q ss_pred ccCCCCCCCC-CCCCCcEEEEEc----CCCCcceeeeeecCCCCCcchhhh
Q psy13877 35 EHTSNQPLQM-GSSPAQVVKLTN----PPVQTGQKMIVLTNNSNPPALEEK 80 (114)
Q Consensus 35 E~peeVP~G~-~~kPGD~V~lTG----p~p~tgf~a~~l~n~v~~~~~~~~ 80 (114)
+..+.+|.|. ..++|.-|-+.| -.|..-.+|++|++ ++....+++
T Consensus 87 ~g~~~vp~g~p~l~~G~YVMV~G~v~~~s~eP~i~AvKm~D-LS~~p~~E~ 136 (150)
T 3mxn_B 87 RGLERVPRGRPCLVPGKYVMVMGVVQACSPEPCLQAVKMTD-LSDNPIHES 136 (150)
T ss_dssp ECGGGSCCCSCCCSTTCEEEEEEEEEECSSSCEEEEEEEEE-CCSCHHHHH
T ss_pred eeccccCCCCcccCCCCEEEEEEEEEecCCCceEEEEEeee-CCCCcchHH
Confidence 4477888887 469999999999 23444478999888 665555554
No 11
>3b9c_A HSPC159; beta sandwich, unknown function; 1.90A {Homo sapiens} PDB: 2jj6_A
Probab=24.90 E-value=69 Score=22.26 Aligned_cols=20 Identities=10% Similarity=0.044 Sum_probs=14.8
Q ss_pred CCCCCCCCCCCcEEEEEc-CCCC
Q psy13877 39 NQPLQMGSSPAQVVKLTN-PPVQ 60 (114)
Q Consensus 39 eVP~G~~~kPGD~V~lTG-p~p~ 60 (114)
.+|.| ++||+.|+|.| +.+.
T Consensus 15 ~i~~g--l~~G~~i~I~G~v~~~ 35 (144)
T 3b9c_A 15 HIKGG--MRPGKKVLVMGIVDLN 35 (144)
T ss_dssp ECTTC--CCTTCEEEEEEEECSS
T ss_pred cCCCC--CccCCEEEEEEEECCC
Confidence 34555 89999999999 4433
No 12
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=24.54 E-value=39 Score=22.37 Aligned_cols=15 Identities=7% Similarity=0.452 Sum_probs=12.2
Q ss_pred CCCCCcEEEEEcCCC
Q psy13877 45 GSSPAQVVKLTNPPV 59 (114)
Q Consensus 45 ~~kPGD~V~lTGp~p 59 (114)
+++|||+|.|+=+.+
T Consensus 56 g~k~GdVvkI~R~S~ 70 (84)
T 4ayb_H 56 NAKPGDIIRIIRKSQ 70 (84)
T ss_dssp TCCTTCEEEEEEEET
T ss_pred CCCCCCEEEEEEcCC
Confidence 799999999987433
No 13
>3i8t_A Galectin-4; S-type lectin, carbohydrate binding, molecular recognition, sugar binding protein; HET: LBT; 2.10A {Mus musculus} PDB: 2dyc_A
Probab=23.56 E-value=70 Score=22.89 Aligned_cols=25 Identities=8% Similarity=-0.073 Sum_probs=16.6
Q ss_pred CCCCcEEEEEc-CCCCc-ceeeeeecC
Q psy13877 46 SSPAQVVKLTN-PPVQT-GQKMIVLTN 70 (114)
Q Consensus 46 ~kPGD~V~lTG-p~p~t-gf~a~~l~n 70 (114)
++||+.|+|.| +.+.. .|.--..++
T Consensus 39 L~~G~~I~I~G~v~~~a~rF~INl~~g 65 (164)
T 3i8t_A 39 LSVGMSVYIQGMAKENMRRFHVNFAVG 65 (164)
T ss_dssp CCTTCEEEEEEEECTTCCBEEEEEESS
T ss_pred CCCCCEEEEEEEECCCCCEEEEEeccC
Confidence 99999999999 43332 454444444
No 14
>3ap9_A Galectin-8; beta-sandwich, carbohydrate/sugar binding, lacto-N fucopentaose III, sugar binding protein; HET: GAL FUC NAG BGC; 1.33A {Homo sapiens} PDB: 3ap4_A 3ap5_A* 3ap6_A* 3ap7_A* 3apb_A 2yv8_A 2yxs_A*
Probab=22.49 E-value=91 Score=21.78 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=14.0
Q ss_pred CCCCCCCCCCcEEEEEc-CCC
Q psy13877 40 QPLQMGSSPAQVVKLTN-PPV 59 (114)
Q Consensus 40 VP~G~~~kPGD~V~lTG-p~p 59 (114)
+|.| ++||+.|+|.| +.+
T Consensus 23 i~~g--l~~G~~i~I~G~v~~ 41 (154)
T 3ap9_A 23 IPDQ--LDPGTLIVIRGHVPS 41 (154)
T ss_dssp CCSC--CCTTCEEEEEEECCT
T ss_pred CCCC--CccCCEEEEEEEECC
Confidence 4444 89999999999 544
No 15
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium meliloti}
Probab=21.90 E-value=25 Score=24.90 Aligned_cols=11 Identities=27% Similarity=0.425 Sum_probs=9.2
Q ss_pred CCCCCcEEEEE
Q psy13877 45 GSSPAQVVKLT 55 (114)
Q Consensus 45 ~~kPGD~V~lT 55 (114)
++++||+|.+-
T Consensus 117 gi~~Gd~v~~~ 127 (136)
T 3pjy_A 117 GVSPGDRLEGA 127 (136)
T ss_dssp TCCTTCEEEET
T ss_pred CCCCCCEEEEC
Confidence 68999999864
No 16
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=21.53 E-value=14 Score=25.51 Aligned_cols=22 Identities=14% Similarity=0.212 Sum_probs=16.4
Q ss_pred CCCCCcEEEEEc---------CCCCcceeee
Q psy13877 45 GSSPAQVVKLTN---------PPVQTGQKMI 66 (114)
Q Consensus 45 ~~kPGD~V~lTG---------p~p~tgf~a~ 66 (114)
.+++||.+.|+| ...|..|++|
T Consensus 33 ~ikvGD~I~f~~~~l~~~V~~v~~Y~sF~~l 63 (109)
T 2z0t_A 33 QIKPGDIIIFEGGKLKVKVKGIRVYSSFKEM 63 (109)
T ss_dssp GCCTTCEEEEGGGTEEEEEEEEEEESCHHHH
T ss_pred cCCCCCEEEECCCEEEEEEEEEEccCCHHHH
Confidence 368999999988 3456676554
No 17
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=21.21 E-value=40 Score=24.69 Aligned_cols=33 Identities=9% Similarity=0.241 Sum_probs=20.7
Q ss_pred CCCCCcEEEEEcCC-----CCcceeeeeecCCCCCcch
Q psy13877 45 GSSPAQVVKLTNPP-----VQTGQKMIVLTNNSNPPAL 77 (114)
Q Consensus 45 ~~kPGD~V~lTGp~-----p~tgf~a~~l~n~v~~~~~ 77 (114)
.++|||.|.|.||. +...-..+.+++.+-++.+
T Consensus 90 ~l~~Gd~l~v~gP~G~f~l~~~~~~~lliagGtGitPi 127 (252)
T 2gpj_A 90 TAQVGELIQIGGPGLKKLINFEADWFLLAGDMTALPAI 127 (252)
T ss_dssp HCCTTCEEEEEEEECCCCCCSSSSEEEEEEEGGGHHHH
T ss_pred hCCCCCEEEEecCCCCCcCCCCCceEEEEcchhhHHHH
Confidence 58999999999932 2112245666665555543
No 18
>1k0h_A Gpfii; twisted beta-sandwich, viral protein; NMR {Enterobacteria phage lambda} SCOP: b.106.1.2 PDB: 2kx4_A
Probab=20.97 E-value=65 Score=22.13 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=22.8
Q ss_pred CCCCCcEEEEEc-------CCC-CcceeeeeecCCCCCc
Q psy13877 45 GSSPAQVVKLTN-------PPV-QTGQKMIVLTNNSNPP 75 (114)
Q Consensus 45 ~~kPGD~V~lTG-------p~p-~tgf~a~~l~n~v~~~ 75 (114)
..++||.|.+-| +.| .+|...|+|.. ..||
T Consensus 74 ~~~~gD~v~i~g~~y~V~~v~PDg~G~~~L~L~~-g~p~ 111 (117)
T 1k0h_A 74 QLRRGDTLTIGEENFWVDRVSPDDGGSCHLWLGR-GVPP 111 (117)
T ss_dssp TCCSSCEEEETTTCEEBCCCCSSSCCCTTCBBCC-CCCS
T ss_pred CCCCCCEEEECCeEEEEeeeccCCCCeEEEEecC-CCCC
Confidence 479999999988 666 46688888776 5555
No 19
>3mcq_A Thiamine-monophosphate kinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PGE PG4 1PE; 1.91A {Methylobacillus flagellatus}
Probab=20.95 E-value=58 Score=25.04 Aligned_cols=20 Identities=10% Similarity=0.137 Sum_probs=14.9
Q ss_pred CCCCCCCCCCCcEEEEEcCC
Q psy13877 39 NQPLQMGSSPAQVVKLTNPP 58 (114)
Q Consensus 39 eVP~G~~~kPGD~V~lTGp~ 58 (114)
++...+.++|||.|.+||+.
T Consensus 139 ~~~~~~~a~~GD~ii~tg~~ 158 (319)
T 3mcq_A 139 ASLLRSTARADDDIWVSGPL 158 (319)
T ss_dssp CCCCSSCCCTTEEEEECSCC
T ss_pred cccccCCCCCCCEEEEECCc
Confidence 34444479999999999953
No 20
>2d6m_A Galectin-9, lectin, galactose binding, soluble 9; beta sandwich, carbohydrate binding protein, sugar binding protein; HET: LBT; 1.60A {Mus musculus} PDB: 2d6l_X 2d6k_A* 2d6n_A* 2d6p_A* 2d6o_X*
Probab=20.56 E-value=98 Score=21.82 Aligned_cols=29 Identities=7% Similarity=-0.173 Sum_probs=18.1
Q ss_pred CCCCCCCCCCcEEEEEc-CCCC-cceeeeeecC
Q psy13877 40 QPLQMGSSPAQVVKLTN-PPVQ-TGQKMIVLTN 70 (114)
Q Consensus 40 VP~G~~~kPGD~V~lTG-p~p~-tgf~a~~l~n 70 (114)
||.| ++||+.|+|.| +.+. ..|.--..++
T Consensus 23 i~~g--l~~G~~i~I~G~v~~~~~rF~Inl~~g 53 (159)
T 2d6m_A 23 IQGG--LQEGLQVTLQGTTKSFAQRFVVNFQNS 53 (159)
T ss_dssp CTTC--CCTTCEEEEEEEECSSCCBEEEEEESS
T ss_pred CCCC--CccCCEEEEEEEECCCCCEEEEEEecC
Confidence 4444 99999999999 4433 2454333333
No 21
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=20.33 E-value=26 Score=21.74 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=10.3
Q ss_pred ecCceeeeceEe-eeeccCCCCCCCC
Q psy13877 20 TRGSKFVKFQEL-KVQEHTSNQPLQM 44 (114)
Q Consensus 20 ~r~SkF~dfQeV-rIQE~peeVP~G~ 44 (114)
..+|||..+.+. .+-+..-++|.|.
T Consensus 6 ~~~~~fa~~~e~~~~n~~~~~~~~~~ 31 (77)
T 1rws_A 6 HHGSKMIKVKVIGRNIEKEIEWREGM 31 (77)
T ss_dssp ----CCCCCBSTTCCCCCCCCCCSSC
T ss_pred chhhHHHHHHHhcccCCEEEECCCCC
Confidence 446677766552 2333333455554
No 22
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=20.26 E-value=67 Score=21.06 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=13.0
Q ss_pred CCCCCcEEEEEcCCCCc
Q psy13877 45 GSSPAQVVKLTNPPVQT 61 (114)
Q Consensus 45 ~~kPGD~V~lTGp~p~t 61 (114)
+++|||+|.|+=+.+-+
T Consensus 50 G~k~GdVvkI~R~S~ta 66 (77)
T 1eik_A 50 GAKRGDIVKIIRKSPTA 66 (77)
T ss_dssp GCCTTCEEEEEEEETTT
T ss_pred CCCCCCEEEEEECCCCC
Confidence 69999999998744333
Done!