RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13877
         (114 letters)



>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA
           replication, MCM complex, AAA+ Pro ATP-binding,
           DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
          Length = 595

 Score = 48.0 bits (115), Expect = 6e-08
 Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 2/48 (4%)

Query: 1   MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQMGSSP 48
           +     C      G+  L    +K + +Q+  +QE     P   G  P
Sbjct: 159 LEMPTICPKCGKPGQFRLIPEKTKLIDWQKAVIQERPEEVP--SGQLP 204


>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family;
           helicase, MCM homolog, DNA replication, ATP-binding,
           DNA-binding; 1.90A {Methanopyrus kandleri AV19}
          Length = 506

 Score = 33.7 bits (77), Expect = 0.007
 Identities = 1/48 (2%), Positives = 10/48 (20%), Gaps = 5/48 (10%)

Query: 1   MCPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQEHTSNQPLQMGSSP 48
           + P    +        + +    + +    + ++              
Sbjct: 92  VEPRVRFRGLP---HRFRRVERIRPMDGALISIEGVVREVR--GAERL 134


>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase,
           hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA
           binding; 2.8A {Sulfolobus solfataricus}
          Length = 268

 Score = 32.3 bits (74), Expect = 0.019
 Identities = 7/29 (24%), Positives = 13/29 (44%)

Query: 7   CQVNKSGGRLYLQTRGSKFVKFQELKVQE 35
           C      G+  L    +K + +Q+  +QE
Sbjct: 171 CPKCGKPGQFRLIPEKTKLIDWQKAVIQE 199


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 31.7 bits (71), Expect = 0.041
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 31/121 (25%)

Query: 23  SKFV--KFQELKVQEHTSNQPLQMGSSPAQVV---------------KLT---------- 55
            K++  + Q+L  +  T+N P ++      +                KLT          
Sbjct: 308 LKYLDCRPQDLPREVLTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

Query: 56  NPPVQTG--QKMIVLTNNSN-PPALEEKKFDRGIYNNEGLIASKLMKKGGQDRRKPERTS 112
            P        ++ V   +++ P  L    +   I ++  ++ +KL K    +++  E T 
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426

Query: 113 S 113
           S
Sbjct: 427 S 427


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 30.7 bits (68), Expect = 0.064
 Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)

Query: 29 QELKVQEHTSNQPLQMGSSPAQVVKLT 55
          Q LK  +  S +     S+PA  +K T
Sbjct: 20 QALKKLQ-ASLKLYADDSAPALAIKAT 45


>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A
           {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
          Length = 279

 Score = 26.9 bits (60), Expect = 1.6
 Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 6/34 (17%)

Query: 2   CPSEDCQVNKSGGRLYLQTRGSKFVKFQELKVQE 35
           C   +C          L    S+F+  Q LK+QE
Sbjct: 159 CS--ECGGR----SFRLLQDESEFLDTQTLKLQE 186


>1t10_A GPI, glucose-6-phosphate isomerase, PGI, phosphohexose;
          phosphoglucose isomerase, substrate,
          D-fructose-6-phosphate; HET: F6P; 2.35A {Leishmania
          mexicana mexicana} SCOP: c.80.1.2
          Length = 605

 Score = 25.7 bits (57), Expect = 3.5
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 32 KVQEHTSNQPLQMGSSPAQVVKLTNPPVQTGQKMIVLTNNSNPP 75
          K++EH        G +P+      N P +  +K  +L    +  
Sbjct: 7  KLKEHVVESTEINGCTPSIATATFNAPYEVARKTKMLGVTDSSL 50


>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics,
           PSI-biology, NEW YORK structural genomi research
           consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas
           SP}
          Length = 320

 Score = 25.2 bits (56), Expect = 5.9
 Identities = 8/59 (13%), Positives = 20/59 (33%), Gaps = 17/59 (28%)

Query: 43  QMGSSPAQVVKLTNPPVQTGQKMIVLTNNSNPPALEEKKFDRGIYNNEGLIASKLMKKG 101
            +        +  +         IV++   N   +++      +   +G+ A+  MK G
Sbjct: 76  TIHEQARAAARDAD---------IVVSMLENGAVVQD------VLFAQGVAAA--MKPG 117


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.310    0.128    0.360 

Gapped
Lambda     K      H
   0.267   0.0783    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,509,766
Number of extensions: 70148
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 8
Length of query: 114
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 37
Effective length of database: 4,551,876
Effective search space: 168419412
Effective search space used: 168419412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.3 bits)