RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13877
         (114 letters)



>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54)
           N-terminal domain {Archaeon Methanobacterium
           thermoautotrophicum [TaxId: 145262]}
          Length = 239

 Score = 30.4 bits (68), Expect = 0.028
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 3   PSEDCQVNKSGGRLY-LQTRGSKFVKFQELKVQEHTSNQPLQMGSSPAQV 51
            +E    ++ GGR + L    S+F+  Q LK+QE   N     G  P Q+
Sbjct: 145 ITEPSLCSECGGRSFRLLQDESEFLDTQTLKLQEPLENLS--GGEQPRQI 192


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.128    0.360 

Gapped
Lambda     K      H
   0.267   0.0568    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 365,087
Number of extensions: 13233
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 3
Length of query: 114
Length of database: 2,407,596
Length adjustment: 72
Effective length of query: 42
Effective length of database: 1,419,036
Effective search space: 59599512
Effective search space used: 59599512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.2 bits)