BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13880
(256 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9V726|CPSF1_DROME Cleavage and polyadenylation specificity factor subunit 1
OS=Drosophila melanogaster GN=Cpsf160 PE=1 SV=1
Length = 1455
Score = 193 bits (490), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 91/195 (46%), Positives = 133/195 (68%), Gaps = 10/195 (5%)
Query: 68 PRGVYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTF 127
P VY EF++++S++GF+++D ++N++++MYQPEARES GG +L++K D+HLGQ VNT
Sbjct: 1265 PLEVYGIEFMVDNSNLGFLVTDAERNIIVYMYQPEARESLGGQKLLRKADYHLGQVVNTM 1324
Query: 128 FKIRCKPSPISDAPGARSRFL------TWYASLDGALGFFLPLPEKNYRRLLMLQNVMVT 181
F+++C + R FL Y +LDGALG+ LPLPEK YRR LMLQNV+++
Sbjct: 1325 FRVQCHQKGLHQ----RQPFLYENKHFVVYGTLDGALGYCLPLPEKVYRRFLMLQNVLLS 1380
Query: 182 HTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHND 241
+ H GLNP+ +RT K NPSR IIDG L+W + ++ ER E+ KKIG++ +
Sbjct: 1381 YQEHLCGLNPKEYRTLKSSKKQGINPSRCIIDGDLIWSYRLMANSERNEVAKKIGTRTEE 1440
Query: 242 ILDELYDIEALSSHF 256
IL +L +IE L+S F
Sbjct: 1441 ILGDLLEIERLASVF 1455
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 41/52 (78%)
Query: 6 ELLTVSLGLHGNRPLLLVRTQHELLIYQAFRHPKGTLKLRFKKLKVLFVSDR 57
EL + LGL+G RPLLLVRT+ ELLIYQ FR+PKG LK+RF+K+ L + D+
Sbjct: 864 ELSVIGLGLNGERPLLLVRTRVELLIYQVFRYPKGHLKIRFRKMDQLNLLDQ 915
>sp|Q9EPU4|CPSF1_MOUSE Cleavage and polyadenylation specificity factor subunit 1 OS=Mus
musculus GN=Cpsf1 PE=1 SV=1
Length = 1441
Score = 183 bits (465), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 84/194 (43%), Positives = 133/194 (68%), Gaps = 7/194 (3%)
Query: 68 PRGVYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTF 127
P VY+ +F+++++ +GF++SD+D+N++++MY PEA+ES GG RL+++ DFH+G HVNTF
Sbjct: 1250 PLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHVNTF 1309
Query: 128 FKIRCKPSPISDAPGARS-----RFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTH 182
++ C+ + ++ P +S + +TW+A+LDG +G LP+ EK YRRLLMLQN + T
Sbjct: 1310 WRTPCRGA--AEGPSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTM 1367
Query: 183 TSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDI 242
H GLNPRAFR N R ++DG L+ ++L LS ER E+ KKIG+ + I
Sbjct: 1368 LPHHAGLNPRAFRMLHVDRRILQNAVRNVLDGELLNRYLYLSTMERSELAKKIGTTPDII 1427
Query: 243 LDELYDIEALSSHF 256
LD+L + + +++HF
Sbjct: 1428 LDDLLETDRVTAHF 1441
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 35/51 (68%), Gaps = 4/51 (7%)
Query: 3 IVQELLTVSLGLHGNRPLLLVRTQHELLIYQAFRHP----KGTLKLRFKKL 49
+V+E+L V+LG +RP LLV ELLIY+AF H +G LK+RFKK+
Sbjct: 843 LVKEVLLVALGSRQSRPYLLVHVDQELLIYEAFPHDSQLGQGNLKVRFKKV 893
>sp|Q10569|CPSF1_BOVIN Cleavage and polyadenylation specificity factor subunit 1 OS=Bos
taurus GN=CPSF1 PE=1 SV=1
Length = 1444
Score = 183 bits (464), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 84/194 (43%), Positives = 133/194 (68%), Gaps = 7/194 (3%)
Query: 68 PRGVYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTF 127
P VY+ +F+++++ +GF++SD+D+N++++MY PEA+ES GG RL+++ DFH+G HVNTF
Sbjct: 1253 PLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHVNTF 1312
Query: 128 FKIRCKPSPISDAPGARS-----RFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTH 182
++ C+ + ++ P +S + +TW+A+LDG +G LP+ EK YRRLLMLQN + T
Sbjct: 1313 WRTPCRGA--AEGPSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTM 1370
Query: 183 TSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDI 242
H GLNPRAFR N R ++DG L+ ++L LS ER E+ KKIG+ + I
Sbjct: 1371 LPHHAGLNPRAFRMLHVDRRVLQNAVRNVLDGELLNRYLYLSTMERGELAKKIGTTPDII 1430
Query: 243 LDELYDIEALSSHF 256
LD+L + + +++HF
Sbjct: 1431 LDDLLETDRVTAHF 1444
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 34/51 (66%), Gaps = 4/51 (7%)
Query: 3 IVQELLTVSLGLHGNRPLLLVRTQHELLIYQAFRHP----KGTLKLRFKKL 49
+V+E+L V+LG RP LLV ELLIY+AF H +G LK+RFKK+
Sbjct: 846 LVKEVLLVALGSRQRRPYLLVHVDQELLIYEAFPHDSQLGQGNLKVRFKKV 896
>sp|Q10570|CPSF1_HUMAN Cleavage and polyadenylation specificity factor subunit 1 OS=Homo
sapiens GN=CPSF1 PE=1 SV=2
Length = 1443
Score = 180 bits (456), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 82/192 (42%), Positives = 131/192 (68%), Gaps = 3/192 (1%)
Query: 68 PRGVYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTF 127
P VY+ +F+++++ +GF++SD+D+N++++MY PEA+ES GG RL+++ DFH+G HVNTF
Sbjct: 1252 PLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHVNTF 1311
Query: 128 FKIRCKPSPISDAPGA---RSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTS 184
++ C+ + + + ++ +TW+A+LDG +G LP+ EK YRRLLMLQN + T
Sbjct: 1312 WRTPCRGATEGLSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLP 1371
Query: 185 HTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILD 244
H GLNPRAFR N R ++DG L+ ++L LS ER E+ KKIG+ + ILD
Sbjct: 1372 HHAGLNPRAFRMLHVDRRTLQNAVRNVLDGELLNRYLYLSTMERSELAKKIGTTPDIILD 1431
Query: 245 ELYDIEALSSHF 256
+L + + +++HF
Sbjct: 1432 DLLETDRVTAHF 1443
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 35/51 (68%), Gaps = 4/51 (7%)
Query: 3 IVQELLTVSLGLHGNRPLLLVRTQHELLIYQAFRHP----KGTLKLRFKKL 49
+V+E+L V+LG +RP LLV ELLIY+AF H +G LK+RFKK+
Sbjct: 845 LVKEVLLVALGSRQSRPYLLVHVDQELLIYEAFPHDSQLGQGNLKVRFKKV 895
>sp|Q9N4C2|CPSF1_CAEEL Probable cleavage and polyadenylation specificity factor subunit 1
OS=Caenorhabditis elegans GN=cpsf-1 PE=3 SV=2
Length = 1454
Score = 124 bits (311), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 123/220 (55%), Gaps = 12/220 (5%)
Query: 44 LRFKKL-KVLFVSDRSKRANEQPGLPRGVYACEFVIESSSMGFMISDKDKNVVLFMYQPE 102
+RF++ K + ++ R R QP + A + V++ + +GF++SD+ N+ +F Y PE
Sbjct: 1240 IRFQEDNKAMSIASRDDRKCAQPPM-----ASQLVVDGAHVGFLLSDETGNITMFNYAPE 1294
Query: 103 ARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSPI-----SDAPGARSRFLTWYASLDGA 157
A ESNGG RL + ++G ++N F ++R S + + R T +ASLDG+
Sbjct: 1295 APESNGGERLTVRAAINIGTNINAFVRLRGHTSLLQLNNEDEKEAIEQRMTTVFASLDGS 1354
Query: 158 LGFFLPLPEKNYRRLLMLQNVMVTHTSHTGGLNPRAFRTYK-GKGYYAGNPSRGIIDGSL 216
GF PL EK+YRRL LQ + + T GL+ + R+ K + G +R +IDG +
Sbjct: 1355 FGFVRPLTEKSYRRLHFLQTFIGSVTPQIAGLHIKGSRSAKPSQPIVNGRNARNLIDGDV 1414
Query: 217 VWKFLQLSLGERLEICKKIGSKHNDILDELYDIEALSSHF 256
V ++L LSL ++ ++ +++G I+D+L + ++ ++
Sbjct: 1415 VEQYLHLSLYDKTDLARRLGVGRYHIIDDLMQLRRMAFYY 1454
>sp|A8XPU7|CPSF1_CAEBR Probable cleavage and polyadenylation specificity factor subunit 1
OS=Caenorhabditis briggsae GN=cpsf-1 PE=3 SV=1
Length = 1454
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 124/220 (56%), Gaps = 12/220 (5%)
Query: 44 LRFKKL-KVLFVSDRSKRANEQPGLPRGVYACEFVIESSSMGFMISDKDKNVVLFMYQPE 102
+RF++ K + ++ R R Q + A EF+++ +GF++SD+ N+ LF Y PE
Sbjct: 1240 IRFQEENKAMSIASRDDRKCAQAPM-----ASEFLVDGMHIGFLLSDEHGNITLFSYSPE 1294
Query: 103 ARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSPI-SDAPGARS----RFLTWYASLDGA 157
A ESNGG RL K ++G ++N F +++ S + S +P R R T + SLDG+
Sbjct: 1295 APESNGGERLTVKAAINIGTNINAFLRVKGHTSLLDSSSPEERENIEQRMNTIFGSLDGS 1354
Query: 158 LGFFLPLPEKNYRRLLMLQNVMVTHTSHTGGLNPRAFRTYK-GKGYYAGNPSRGIIDGSL 216
G+ PL EK+YRRL LQ + + T GL+ + R+ K + G +R +IDG +
Sbjct: 1355 FGYIRPLTEKSYRRLHFLQTFIGSVTPQIAGLHIKGARSSKPSQPIVNGRNARNLIDGDV 1414
Query: 217 VWKFLQLSLGERLEICKKIGSKHNDILDELYDIEALSSHF 256
V ++L LS+ ++ ++ +++G ILD+L + ++ ++
Sbjct: 1415 VEQYLHLSVYDKTDLARRLGVGRYHILDDLMQLRRMAYYY 1454
>sp|Q7XWP1|CPSF1_ORYSJ Probable cleavage and polyadenylation specificity factor subunit 1
OS=Oryza sativa subsp. japonica GN=Os04g0252200 PE=3 SV=2
Length = 1441
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 103/181 (56%), Gaps = 5/181 (2%)
Query: 71 VYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKI 130
+A EF+I+ S++ + SD DKNV +F Y P+ ES G +L+ + +FH+G H+ F ++
Sbjct: 1257 CFATEFLIDGSTLSLVASDSDKNVQIFYYAPKMVESWKGQKLLSRAEFHVGAHITKFLRL 1316
Query: 131 RCKPSPISDAPGARSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHTGGLN 190
+ P+ + +RF + +LDG +G P+ E +RRL LQ +V H GLN
Sbjct: 1317 QMLPTQ-GLSSEKTNRFALLFGNLDGGIGCIAPIDELTFRRLQSLQRKLVDAVPHVCGLN 1375
Query: 191 PRAFRTY--KGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYD 248
PR+FR + GKG+ G IID L+ + LSL E+L++ ++IG+ + IL D
Sbjct: 1376 PRSFRQFHSNGKGHRPG--PDNIIDFELLCSYEMLSLDEQLDVAQQIGTTRSQILSNFSD 1433
Query: 249 I 249
I
Sbjct: 1434 I 1434
>sp|Q9FGR0|CPSF1_ARATH Cleavage and polyadenylation specificity factor subunit 1
OS=Arabidopsis thaliana GN=CPSF160 PE=1 SV=2
Length = 1442
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 101/184 (54%), Gaps = 4/184 (2%)
Query: 71 VYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKI 130
+A EF+I+ S++ +SD+ KN+ +F Y P+ ES G +L+ + +FH+G HV+ F ++
Sbjct: 1261 CFATEFLIDGSTLSLAVSDEQKNIQVFYYAPKMIESWKGLKLLSRAEFHVGAHVSKFLRL 1320
Query: 131 RCKPSPISDAPGARSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHTGGLN 190
+ +S +RF + +LDG+ G PL E +RRL LQ +V H GLN
Sbjct: 1321 QM----VSSGADKINRFALLFGTLDGSFGCIAPLDEVTFRRLQSLQKKLVDAVPHVAGLN 1376
Query: 191 PRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIE 250
P AFR ++ G + I+D L+ + L L E+LE+ +IG+ IL +L D+
Sbjct: 1377 PLAFRQFRSSGKARRSGPDSIVDCELLCHYEMLPLEEQLELAHQIGTTRYSILKDLVDLS 1436
Query: 251 ALSS 254
+S
Sbjct: 1437 VGTS 1440
>sp|O74733|CFT1_SCHPO Protein cft1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cft1 PE=3 SV=1
Length = 1441
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 100/188 (53%), Gaps = 6/188 (3%)
Query: 70 GVYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFK 129
V A +F+++ ++ F+++D N+ L Y PE ES+ G RL+ + DFH+G +V T
Sbjct: 1254 NVSAADFLVQGENLYFVVADTSGNLRLLAYDPENPESHSGERLVTRGDFHIG-NVITAMT 1312
Query: 130 IRCKPSPISDAP---GARSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHT 186
I K +A F + DG L +P+ ++ YRRL ++QN + +
Sbjct: 1313 ILPKEKKHQNAEYGYDTGDDFSCVMVNSDGGLQMLVPISDRVYRRLNIIQNYLANRVNTI 1372
Query: 187 GGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEL 246
GGLNP+++R NP+R I+DG L+ F +S+ R E+ K G + I+++L
Sbjct: 1373 GGLNPKSYRLITSPSNLT-NPTRRILDGMLIDYFTYMSVAHRHEMAHKCGVPVSTIMNDL 1431
Query: 247 YDI-EALS 253
++ EALS
Sbjct: 1432 VELDEALS 1439
>sp|Q1E5B0|CFT1_COCIM Protein CFT1 OS=Coccidioides immitis (strain RS) GN=CFT1 PE=3 SV=1
Length = 1387
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 97/192 (50%), Gaps = 16/192 (8%)
Query: 71 VYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKI 130
V A +F+ + + +++D D + + Y PE S+ G RL+ ++ FH G +T +
Sbjct: 1197 VIAADFLPDGKRLYILVADDDCTIHVLEYDPEDPTSSKGDRLLHRSSFHTGHFTSTMTLL 1256
Query: 131 -RCKPSPISDAPGARS--------RFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVT 181
SP +D P + S +G++G PL E +YRRL LQ+ +VT
Sbjct: 1257 PEHSSSPSADDPEEDDMDVDYVPKSYQVLVTSQEGSIGVVTPLTEDSYRRLSALQSQLVT 1316
Query: 182 HTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHND 241
H GLNP+A+R + G+ RGI+DG+L+ ++L + + + EI ++G+ D
Sbjct: 1317 SMEHPCGLNPKAYRAVESDGFGG----RGIVDGNLLLRWLDMGVQRKAEIAGRVGA---D 1369
Query: 242 ILDELYDIEALS 253
I D+E +S
Sbjct: 1370 IESIRVDLETIS 1381
>sp|A1C3U1|CFT1_ASPCL Protein cft1 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=cft1 PE=3 SV=1
Length = 1401
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 100/188 (53%), Gaps = 19/188 (10%)
Query: 71 VYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTF--- 127
V A +F+ + + +++D D N+ + Y+PE S+ G +L+ ++ FH+G +T
Sbjct: 1210 VVAADFLPDGDKLFILVADSDCNLHVLQYEPEDPMSSNGDKLLVRSKFHMGHFTSTLTLL 1269
Query: 128 ------FKIRCKPSPISDAPGARSRFL---TWYASLDGALGFFLPLPEKNYRRLLMLQNV 178
++I PS SD+ R S G++G +PE++YRRL LQ+
Sbjct: 1270 PRTTASYEI---PSADSDSMEVDPRITPQQVLITSQSGSIGIVTSIPEESYRRLSALQSQ 1326
Query: 179 MVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSK 238
+ H GLNPRA+R + G AG RG++DG+L++++L +S R+EI ++G+
Sbjct: 1327 LANTVEHPCGLNPRAYRAIESDG-TAG---RGMLDGNLLYQWLSMSKQRRMEIAARVGAH 1382
Query: 239 HNDILDEL 246
+I +L
Sbjct: 1383 EWEIKADL 1390
>sp|A2R919|CFT1_ASPNC Protein cft1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=cft1 PE=3 SV=1
Length = 1383
Score = 95.1 bits (235), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 97/192 (50%), Gaps = 16/192 (8%)
Query: 71 VYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKI 130
V A EF+ + + +++D D N+ + Y PE +S+ G RL+ ++ FH+G +T +
Sbjct: 1192 VCAAEFLPDGKRLFIVVADSDCNIHVLQYDPEDPKSSNGDRLLSRSKFHMGNFASTLTLL 1251
Query: 131 ---------RCKPSPISDAPGARSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVT 181
S D + +G+LG +PE++YRRL LQ+ +
Sbjct: 1252 PRTMVSSEKMVSSSDGMDIDNQSPLHQVLMTTQNGSLGLITCIPEESYRRLSALQSQLTN 1311
Query: 182 HTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHND 241
H GLNPRAFR + G RG++DG+L++K++ +S + EI ++G++ +
Sbjct: 1312 TLEHPCGLNPRAFRAVESD----GTAGRGMLDGNLLFKWIDMSKQRKTEIAGRVGAREWE 1367
Query: 242 ILDELYDIEALS 253
I D+EA+S
Sbjct: 1368 I---KADLEAIS 1376
>sp|Q4WCL1|CFT1_ASPFU Protein cft1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=cft1 PE=3 SV=2
Length = 1401
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 96/192 (50%), Gaps = 17/192 (8%)
Query: 71 VYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFF-- 128
V A EF+ + + +++D D N+ + Y PE +S+ G RL+ ++ FH+G T
Sbjct: 1210 VVAAEFLPDGDKLFILVADSDCNLHVLQYDPEDPKSSNGDRLLARSKFHMGHFATTMTLL 1269
Query: 129 --------KIRCKPSPIS-DAPGARSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVM 179
K P + D+ + L S G++G +PE++YRRL LQ+ +
Sbjct: 1270 PRTMVSSEKAMANPDSMEIDSQTISQQVLI--TSQSGSVGIVTSVPEESYRRLSALQSQL 1327
Query: 180 VTHTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKH 239
H GLNPRA+R + G RG++DG+L++++L + ++EI ++G+
Sbjct: 1328 ANSLEHPCGLNPRAYRAVESD----GTAGRGMLDGNLLYQWLDMGQHRKMEIAARVGAHE 1383
Query: 240 NDILDELYDIEA 251
+I +L I A
Sbjct: 1384 WEIKADLEAIGA 1395
>sp|A1DB13|CFT1_NEOFI Protein cft1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=cft1 PE=3 SV=1
Length = 1400
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 96/192 (50%), Gaps = 17/192 (8%)
Query: 71 VYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFF-- 128
V A EF+ + + +++D D N+ + Y PE +S+ G RL+ ++ FH+G T
Sbjct: 1209 VVAAEFLPDGDKLFILVADSDCNLHVLQYDPEDPKSSNGDRLLARSKFHMGHFATTMTLL 1268
Query: 129 --------KIRCKPSPIS-DAPGARSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVM 179
K P + D+ + L S G++G +PE++YRRL LQ+ +
Sbjct: 1269 PRTMVSSEKAMADPDSMEIDSQTISQQVLI--TSQSGSVGIVTSVPEESYRRLSALQSQL 1326
Query: 180 VTHTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKH 239
H GLNPRA+R + G RG++DG+L++++L + ++EI ++G+
Sbjct: 1327 TNSLEHPCGLNPRAYRAVESD----GTAGRGMLDGNLLYQWLDMGQHRKMEIAARVGAHE 1382
Query: 240 NDILDELYDIEA 251
+I +L I A
Sbjct: 1383 WEIKADLEAIGA 1394
>sp|Q2TZ19|CFT1_ASPOR Protein cft1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=cft1 PE=3 SV=1
Length = 1393
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 99/192 (51%), Gaps = 16/192 (8%)
Query: 71 VYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKI 130
V A +F+ + + + +++D D N+ + Y PE +S+ G RL+ ++ FH G ++T +
Sbjct: 1202 VLAADFLPDGNKLFILVADSDCNLHVLQYDPEDPKSSNGDRLLSRSKFHTGNFISTLTLL 1261
Query: 131 -RCKPSP---ISDAPGAR-----SRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVT 181
R S ISD R S +G++G + E++YRRL LQ+ +
Sbjct: 1262 PRTSVSSEQMISDVDAMDVDIKIPRHQMLITSQNGSVGLVTCVSEESYRRLSALQSQLTN 1321
Query: 182 HTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHND 241
H GLNPRAFR + G RG++DG L++++L +S ++EI ++G+ +
Sbjct: 1322 TIEHPCGLNPRAFRAVESD----GTAGRGMLDGKLLFQWLDMSKQRKVEIASRVGANEWE 1377
Query: 242 ILDELYDIEALS 253
I D EA+S
Sbjct: 1378 I---KADFEAIS 1386
>sp|Q5BDG7|CFT1_EMENI Protein cft1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=cft1 PE=3 SV=1
Length = 1339
Score = 84.3 bits (207), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 97/192 (50%), Gaps = 16/192 (8%)
Query: 71 VYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKI 130
V A +F+ + + + +++D D N+ + Y PE S+ G +L+ ++ FH G +T +
Sbjct: 1148 VLAADFLPDGNKLFIVVADSDCNLYVLQYDPEDPNSSNGDKLLNRSKFHTGNFASTVTLL 1207
Query: 131 -RCKPSPISDAPGARSRFLTWYASL--------DGALGFFLPLPEKNYRRLLMLQNVMVT 181
R S G+ + A L +G++G +PE++YRRL LQ+ +
Sbjct: 1208 PRTLVSSERAMSGSDKMDIDNTAPLHQVLVTSHNGSIGLVTCVPEESYRRLSALQSQLTN 1267
Query: 182 HTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHND 241
H GLNPRA+R + + RG++D +L+ ++L +S + EI ++G+ +
Sbjct: 1268 TLEHPCGLNPRAYRAVESD----ASAGRGMLDSNLLLQYLDMSKQRKAEIAGRVGATEWE 1323
Query: 242 ILDELYDIEALS 253
I D+EA+S
Sbjct: 1324 I---RADLEAIS 1332
>sp|Q6C740|CFT1_YARLI Protein CFT1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CFT1
PE=3 SV=1
Length = 1269
Score = 84.3 bits (207), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 91/186 (48%), Gaps = 12/186 (6%)
Query: 71 VYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKI 130
V C+F IE ++ F+++D K + + Y P+ +S G RL++++ F+ G+ +++ +
Sbjct: 1092 VTTCDFAIEGENLTFVVADLQKRLHILEYDPDDPQSYSGARLLRRSVFYSGKVIDSSAMV 1151
Query: 131 RCKPSPISDAPGARSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHTGGLN 190
P RF+ DG++ +P PE YRRL +Q + +H GL+
Sbjct: 1152 ----------PINEDRFMVIGVCSDGSVTDVVPCPEDAYRRLYAIQTQITDKEAHVCGLH 1201
Query: 191 PRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIE 250
PRA+R +P R I+DG + +F L ++ ++G ++ ++ D+E
Sbjct: 1202 PRAYRYDPILPGTGNSPHRPILDGHTLIRFANLPRNKQNVYANRLGQRYQQLI--WKDLE 1259
Query: 251 ALSSHF 256
+S F
Sbjct: 1260 LISDLF 1265
>sp|P0CM62|CFT1_CRYNJ Protein CFT1 OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=CFT1 PE=3 SV=1
Length = 1431
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 97/182 (53%), Gaps = 7/182 (3%)
Query: 71 VYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKI 130
V +F++ + F+ SD++ ++ + + P +S G RL+ +T++H G T K+
Sbjct: 1253 VVTADFLVHDGQVTFISSDRNGDMRMLDFDPTDPDSLNGERLMLRTEYHAGSAA-TVSKV 1311
Query: 131 RCKPSPISDAPGARSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHTGGLN 190
+ + +++ + YA+ DGAL + + + ++RL ++ + +V + H GLN
Sbjct: 1312 IARRKTAEEEFAPQTQII--YATADGALTTVVSVKDARFKRLQLVSDQLVRNAQHVAGLN 1369
Query: 191 PRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIE 250
PRAFRT + S+GI+DG L+ +F +G + E+ ++IG+ D + D++
Sbjct: 1370 PRAFRTVRND-LLPRPLSKGILDGQLLNQFALQPIGRQKEMMRQIGT---DAVTVASDLQ 1425
Query: 251 AL 252
AL
Sbjct: 1426 AL 1427
>sp|P0CM63|CFT1_CRYNB Protein CFT1 OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=CFT1 PE=3 SV=1
Length = 1431
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 97/182 (53%), Gaps = 7/182 (3%)
Query: 71 VYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKI 130
V +F++ + F+ SD++ ++ + + P +S G RL+ +T++H G T K+
Sbjct: 1253 VVTADFLVHDGQVTFISSDRNGDMRMLDFDPTDPDSLNGERLMLRTEYHAGSAA-TVSKV 1311
Query: 131 RCKPSPISDAPGARSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHTGGLN 190
+ + +++ + YA+ DGAL + + + ++RL ++ + +V + H GLN
Sbjct: 1312 IARRKTAEEEFAPQTQII--YATADGALTTVVSVKDARFKRLQLVSDQLVRNAQHVAGLN 1369
Query: 191 PRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIE 250
PRAFRT + S+GI+DG L+ +F +G + E+ ++IG+ D + D++
Sbjct: 1370 PRAFRTVRND-LLPRPLSKGILDGQLLNQFALQPIGRQKEMMRQIGT---DAVTVASDLQ 1425
Query: 251 AL 252
AL
Sbjct: 1426 AL 1427
>sp|Q6FSD2|CFT1_CANGA Protein CFT1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=CFT1 PE=3 SV=1
Length = 1361
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 93/181 (51%), Gaps = 3/181 (1%)
Query: 71 VYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKI 130
V + EF++ + + F+++D+D + + Y P+ + G RL+ + F+L N +
Sbjct: 1171 VISVEFLVNNGDIYFLVTDRDSIMHVLKYAPDQPNTLSGQRLVHCSSFNLHSLNNCTMLL 1230
Query: 131 RCKPSPISDAPGARSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHTGGLN 190
D +RS F T A +DG++ +P+ E+ YRRL +Q ++ GLN
Sbjct: 1231 PKNDEFPRDQRYSRS-FQTITAQVDGSISKIVPVKEETYRRLYFIQQQIIDKEPQLAGLN 1289
Query: 191 PRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHN-DILDELYDI 249
PR R K Y+ G+ R ++D +++ +F +S+ R I +K+G N ++ +L D+
Sbjct: 1290 PRMERQ-DNKYYHLGHSLRPMLDFNIIKRFKDMSMNRRSHIVQKLGKNSNLEVWRDLIDL 1348
Query: 250 E 250
E
Sbjct: 1349 E 1349
>sp|Q6BHK3|CFT1_DEBHA Protein CFT1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=CFT1 PE=3 SV=2
Length = 1342
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 5/182 (2%)
Query: 71 VYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKI 130
V +F+I+ + +I+D + + L Y PE S+ G RLI K F++ T I
Sbjct: 1158 VNCADFIIKDEEIFILIADNNSTLHLVKYDPEDPTSSNGQRLIHKASFNINS---TPTCI 1214
Query: 131 RCKPSPISDAPGARSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHTGGLN 190
R P P + F + +++DG+ P+ E +YRR+ +LQ + H GLN
Sbjct: 1215 RSIPKNEEINPSSTEVFQSIGSTIDGSFYTVFPINEASYRRMYILQQQITDKEYHFCGLN 1274
Query: 191 PRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSK--HNDILDELYD 248
PR R ++ ++D ++ F +L+ R + K+ SK + DI +L +
Sbjct: 1275 PRLNRFGGLSMTVNDTNTKPLLDYEVIRMFAKLNEDRRKNLSMKVSSKNVYQDIWKDLIE 1334
Query: 249 IE 250
+
Sbjct: 1335 FD 1336
>sp|Q75EY8|CFT1_ASHGO Protein CFT1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=CFT1 PE=3 SV=1
Length = 1305
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 15/187 (8%)
Query: 73 ACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRC 132
EF++ + + F+++D++ + + Y P+ S G RL+ T F+L NT ++
Sbjct: 1115 CVEFLVNNGDVYFLVTDRNNLMHVLKYAPDEPNSLSGQRLVHCTSFNL-HSTNTCMRLIK 1173
Query: 133 KPSPISDAPGARSRFLTWY--------ASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTS 184
K +D G SR Y + DG + +PL E +YR L ++Q ++
Sbjct: 1174 K----NDEFGKVSRGFGIYMPSFQCIGSQADGTIFKVVPLSEASYRSLYLIQQQLIDKEV 1229
Query: 185 HTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSK-HNDIL 243
GLNPR R + Y G+ R ++D +++ +F LS+ R+ + K G + H +I
Sbjct: 1230 QLCGLNPRMER-LENPFYQMGHILRPMLDFTVLKRFATLSIPTRMTMASKAGRQAHAEIW 1288
Query: 244 DELYDIE 250
+L DIE
Sbjct: 1289 RDLIDIE 1295
>sp|Q06632|CFT1_YEAST Protein CFT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=CFT1 PE=1 SV=1
Length = 1357
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 4/164 (2%)
Query: 73 ACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRC 132
+ EF++ M F +D D+NV + Y P+ S G RL+ + F L N+ +
Sbjct: 1173 SLEFLVNGGDMYFAATDADRNVHVLKYAPDEPNSLSGQRLVHCSSFTL-HSTNSCMMLLP 1231
Query: 133 KPSPISDAPGARSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHTGGLNPR 192
+ +P S F +DG++ +PL E+ YRRL ++Q ++ GGLNPR
Sbjct: 1232 RNEEFG-SPQVPS-FQNVGGQVDGSVFKIVPLSEEKYRRLYVIQQQIIDRELQLGGLNPR 1289
Query: 193 AFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIG 236
R Y G+ R ++D +++ +F L++ R I +K G
Sbjct: 1290 MER-LANDFYQMGHSMRPMLDFNVIRRFCGLAIDRRKSIAQKAG 1332
>sp|Q6CTT2|CFT1_KLULA Protein CFT1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=CFT1 PE=3
SV=1
Length = 1300
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 86/181 (47%), Gaps = 6/181 (3%)
Query: 71 VYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKI 130
V EF++ + ++ F+++D+ ++ + Y P+ S G RL+ F++ N + K+
Sbjct: 1115 VMNLEFLVNNGNINFIVTDRQNHLHVLRYAPDEANSLSGQRLVHCNSFNMFT-TNNYMKL 1173
Query: 131 RCKPSPISDAPGARSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHTGGLN 190
K S ++ DG++ +PL E +YRR ++Q ++ H G N
Sbjct: 1174 VRKHVEFG---SKTSNYIALGCQTDGSIFRMIPLNEASYRRFYLVQQQLLDHEIPLAGFN 1230
Query: 191 PRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGS-KHNDILDELYDI 249
+ R + Y+ G+ R +D ++ K++ L + +R I ++G ++ +L DI
Sbjct: 1231 TKMER-LDNEYYHKGHSLRPTLDSQVLKKYIHLPITKRTTIENRVGRHASTELWHDLIDI 1289
Query: 250 E 250
E
Sbjct: 1290 E 1290
>sp|Q7SEY2|CFT1_NEUCR Protein cft-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=cft-1 PE=3 SV=2
Length = 1456
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 81/178 (45%), Gaps = 13/178 (7%)
Query: 71 VYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNT---- 126
V +F+ + + + SD D ++ + + PE +S GH L+ +T F+ G H T
Sbjct: 1248 VLNADFLPDGKELYIVASDADGHIHILQFDPEHPKSLQGHLLLHRTTFNTGAHHPTSSLL 1307
Query: 127 FFKIRCKPSPISDAPGARSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHT 186
+ PS +S S + AS G L PL E YRRL L + H
Sbjct: 1308 LPAVYPNPSSLSSNSEENSPHILLLASPTGVLATLRPLQENAYRRLSSLAVQLTNGLPHP 1367
Query: 187 GGLNPRAFR--------TYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIG 236
GLNP+ +R + + G AG R I+DG ++ +FL+L G+R E+ + G
Sbjct: 1368 AGLNPKGYRLPSPSASASMQLPGVDAGI-GRNIVDGKILERFLELGTGKRQEMAGRAG 1424
>sp|Q5AFT3|CFT1_CANAL Protein CFT1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876)
GN=CFT1 PE=3 SV=1
Length = 1420
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 76/184 (41%), Gaps = 15/184 (8%)
Query: 70 GVYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFK 129
V +F+I + +++D + + L Y P+ +S G +L+ K F L ++
Sbjct: 1217 SVECADFIINDDEIFVLVADNNNVLHLLNYDPDDPQSINGTKLLTKASFELNSTISCLRS 1276
Query: 130 ---IRCKPSPISDA-----------PGARSRFLTWYASL-DGALGFFLPLPEKNYRRLLM 174
I + S +DA P S + S DG+ P+ E YRR+ +
Sbjct: 1277 LPLIDIEESVQTDALTNIAVPPPLPPNTTSNYFQVIGSTQDGSFFNVFPINEAAYRRMYI 1336
Query: 175 LQNVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKK 234
LQ ++ H GLNPR R K ++ I+D L+ F +LS + + K
Sbjct: 1337 LQQQLIDKEFHYCGLNPRLNRIGSIKLQNNETNTKPILDYDLIRSFTKLSDDRKRNLANK 1396
Query: 235 IGSK 238
+ K
Sbjct: 1397 VSGK 1400
>sp|Q0UUE2|CFT1_PHANO Protein CFT1 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=CFT1 PE=3 SV=1
Length = 1375
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 7/170 (4%)
Query: 74 CEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNT--FFKIR 131
+F+ + +++D D N+ + + P+ +S GG RL++K+ FH G +T + R
Sbjct: 1205 ADFLPFEEQLHIIVADADMNLQVLQFDPDHPKSMGGTRLLQKSTFHTGHFPSTMHLLQSR 1264
Query: 132 CKPSPISDAPGARSRFLTWY----ASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHTG 187
S+ + + L + S G L PL E +YRRL L +
Sbjct: 1265 LHMPTASEFTTSTTSSLPLHQILCTSQSGTLALITPLSESSYRRLSGLATHLQQFLDSPC 1324
Query: 188 GLNPRAFRTYK-GKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIG 236
GLN +AFR +G + R ++DG L+ ++ +L R E K+G
Sbjct: 1325 GLNGKAFRAADVMEGGWDAGTQRAMLDGGLLMRWGELGEQRRREGLGKVG 1374
>sp|Q5A7S5|RSE1_CANAL Pre-mRNA-splicing factor RSE1 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=RSE1 PE=3 SV=1
Length = 1219
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 17/141 (12%)
Query: 110 HRLIKKTDFHLGQHVNTFFKIRCKPSPISDAPGARSRFLTWYASLDGALGFFLPLPEKNY 169
++L +FH+G + T F + C + G S Y L G +G +PL K+
Sbjct: 1089 YKLQNLIEFHIGDII-TSFNLGCL-----NLAGTESVI---YTGLQGTIGLLIPLVSKSE 1139
Query: 170 RRLLM-LQNVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGER 228
LL LQ M ++ G + R+Y NP + +IDG L+ +FL+ + +
Sbjct: 1140 VELLFNLQLYMQQSQNNLVGKDHLKLRSYY-------NPIKNVIDGDLLERFLEFDISLK 1192
Query: 229 LEICKKIGSKHNDILDELYDI 249
+EI +K+ NDI +L D+
Sbjct: 1193 IEISRKLNKSVNDIEKKLIDL 1213
>sp|O49552|DDB1B_ARATH DNA damage-binding protein 1b OS=Arabidopsis thaliana GN=DDB1B PE=2
SV=2
Length = 1088
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 117 DFHLGQHVNTF----FKIRCKPSPISDAPGARSRFLTWYASLDGALGFFLPLPEKNYRRL 172
++H+G+ VN F ++ S I P + ++ G +G LP++ Y L
Sbjct: 956 EYHIGEFVNRFRHGSLVMKLPDSDIGQIP------TVIFGTVSGMIGVIASLPQEQYAFL 1009
Query: 173 LMLQNVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEIC 232
LQ + GGL+ +R++ + A ++G +DG L+ FL LS G+ EI
Sbjct: 1010 EKLQTSLRKVIKGVGGLSHEQWRSFNNEKRTA--EAKGYLDGDLIESFLDLSRGKMEEIS 1067
Query: 233 K 233
K
Sbjct: 1068 K 1068
>sp|Q9M0V3|DDB1A_ARATH DNA damage-binding protein 1a OS=Arabidopsis thaliana GN=DDB1A PE=1
SV=1
Length = 1088
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 12/129 (9%)
Query: 111 RLIKKTDFHLGQHVNTF----FKIRCKPSPISDAPGARSRFLTWYASLDGALGFFLPLPE 166
RL ++HLG+ VN F +R S I P + +++G +G LP+
Sbjct: 950 RLEVVGEYHLGEFVNRFRHGSLVMRLPDSEIGQIP------TVIFGTVNGVIGVIASLPQ 1003
Query: 167 KNYRRLLMLQNVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLG 226
+ Y L LQ+ + GGL+ +R++ + A +R +DG L+ FL LS
Sbjct: 1004 EQYTFLEKLQSSLRKVIKGVGGLSHEQWRSFNNEKRTA--EARNFLDGDLIESFLDLSRN 1061
Query: 227 ERLEICKKI 235
+ +I K +
Sbjct: 1062 KMEDISKSM 1070
>sp|Q6P6Z0|DDB1_XENLA DNA damage-binding protein 1 OS=Xenopus laevis GN=ddb1 PE=2 SV=1
Length = 1140
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 17/165 (10%)
Query: 96 LFMYQPEARESNGGHR--LIKKTDFHLGQHVNTFFKIRCKPSPISDAPGARS---RFLTW 150
LF+ Q ++ + R L + FHLG+ VN F C S + G S +
Sbjct: 974 LFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVF----CHGSLVMQNLGETSPPTQGSVL 1029
Query: 151 YASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRG 210
+ +++G +G L E Y LL +QN + G + +R++ + P+ G
Sbjct: 1030 FGTVNGMIGLVTSLSESWYNLLLDVQNRLNKVIKSVGKIEHSFWRSFHTE--RKTEPATG 1087
Query: 211 IIDGSLVWKFLQLSLGERLEICKKI------GSKHNDILDELYDI 249
IDG L+ FL +S + E+ + G K +D+L +
Sbjct: 1088 FIDGDLIESFLDISRPKMQEVIANLQIDDGSGMKRETTVDDLIKV 1132
>sp|P33194|DDB1_CHLAE DNA damage-binding protein 1 OS=Chlorocebus aethiops GN=DDB1 PE=1
SV=1
Length = 1140
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 17/165 (10%)
Query: 96 LFMYQPEARESNGGHR--LIKKTDFHLGQHVNTFFKIRCKPSPISDAPGARS---RFLTW 150
LF+ Q ++ + R L + FHLG+ VN F C S + G S +
Sbjct: 974 LFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVF----CHGSLVMQNLGETSTPTQGSVL 1029
Query: 151 YASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRG 210
+ +++G +G L E Y LL +QN + G + +R++ + P+ G
Sbjct: 1030 FGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTE--RKTEPATG 1087
Query: 211 IIDGSLVWKFLQLSLGERLEICKKI------GSKHNDILDELYDI 249
IDG L+ FL +S + E+ + G K D+L +
Sbjct: 1088 FIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKV 1132
>sp|Q16531|DDB1_HUMAN DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1
Length = 1140
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 17/165 (10%)
Query: 96 LFMYQPEARESNGGHR--LIKKTDFHLGQHVNTFFKIRCKPSPISDAPGARS---RFLTW 150
LF+ Q ++ + R L + FHLG+ VN F C S + G S +
Sbjct: 974 LFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVF----CHGSLVMQNLGETSTPTQGSVL 1029
Query: 151 YASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRG 210
+ +++G +G L E Y LL +QN + G + +R++ + P+ G
Sbjct: 1030 FGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTE--RKTEPATG 1087
Query: 211 IIDGSLVWKFLQLSLGERLEICKKI------GSKHNDILDELYDI 249
IDG L+ FL +S + E+ + G K D+L +
Sbjct: 1088 FIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKV 1132
>sp|Q3U1J4|DDB1_MOUSE DNA damage-binding protein 1 OS=Mus musculus GN=Ddb1 PE=1 SV=2
Length = 1140
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 17/165 (10%)
Query: 96 LFMYQPEARESNGGHR--LIKKTDFHLGQHVNTFFKIRCKPSPISDAPGARS---RFLTW 150
LF+ Q ++ + R L + FHLG+ VN F C S + G S +
Sbjct: 974 LFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVF----CHGSLVMQNLGEASTPTQGSVL 1029
Query: 151 YASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRG 210
+ +++G +G L E Y LL +QN + G + +R++ + P+ G
Sbjct: 1030 FGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTE--RKTEPATG 1087
Query: 211 IIDGSLVWKFLQLSLGERLEICKKI------GSKHNDILDELYDI 249
IDG L+ FL +S + E+ + G K D+L +
Sbjct: 1088 FIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKV 1132
>sp|A1A4K3|DDB1_BOVIN DNA damage-binding protein 1 OS=Bos taurus GN=DDB1 PE=2 SV=1
Length = 1140
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 17/165 (10%)
Query: 96 LFMYQPEARESNGGHR--LIKKTDFHLGQHVNTFFKIRCKPSPISDAPGARS---RFLTW 150
LF+ Q ++ + R L + FHLG+ VN F C S + G S +
Sbjct: 974 LFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVF----CHGSLVMQNLGETSTPTQGSVL 1029
Query: 151 YASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRG 210
+ +++G +G L E Y LL +QN + G + +R++ + P+ G
Sbjct: 1030 FGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTE--RKTEPATG 1087
Query: 211 IIDGSLVWKFLQLSLGERLEICKKI------GSKHNDILDELYDI 249
IDG L+ FL +S + E+ + G K D+L +
Sbjct: 1088 FIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKV 1132
>sp|Q5R649|DDB1_PONAB DNA damage-binding protein 1 OS=Pongo abelii GN=DDB1 PE=2 SV=1
Length = 1140
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 17/165 (10%)
Query: 96 LFMYQPEARESNGGHR--LIKKTDFHLGQHVNTFFKIRCKPSPISDAPGARS---RFLTW 150
LF+ Q ++ + R L + FHLG+ VN F C S + G S +
Sbjct: 974 LFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVF----CHGSLVMQNLGETSTPTQGSVL 1029
Query: 151 YASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRG 210
+ +++G +G L E Y LL +QN + G + +R++ + P+ G
Sbjct: 1030 FGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTE--RKTEPATG 1087
Query: 211 IIDGSLVWKFLQLSLGERLEICKKI------GSKHNDILDELYDI 249
IDG L+ FL +S + E+ + G K D+L +
Sbjct: 1088 FIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKV 1132
>sp|Q9XYZ5|DDB1_DROME DNA damage-binding protein 1 OS=Drosophila melanogaster GN=pic PE=1
SV=1
Length = 1140
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 16/162 (9%)
Query: 68 PRGVYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHR--LIKKTDFHLGQHVN 125
P+ + A E + + + +G + N LF+ Q ++ + R L + FHLG VN
Sbjct: 952 PKWMRAVEILDDDTFLG-----SETNGNLFVCQKDSAATTDEERQLLPELARFHLGDTVN 1006
Query: 126 TFFKIRCKPSPISDAPGARSRFL---TWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTH 182
F S + G R+ + Y + +GA+G +P+ Y L L+ +
Sbjct: 1007 VFRH----GSLVMQNVGERTTPINGCVLYGTCNGAIGIVTQIPQDFYDFLHGLEERLKKI 1062
Query: 183 TSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLS 224
G + +R ++ PS G IDG L+ FL LS
Sbjct: 1063 IKSVGKIEHTYYRNFQINSKV--EPSEGFIDGDLIESFLDLS 1102
>sp|Q6QNU4|DDB1_SOLLC DNA damage-binding protein 1 OS=Solanum lycopersicum GN=DDB1 PE=1
SV=1
Length = 1090
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 91/241 (37%), Gaps = 41/241 (17%)
Query: 8 LTVSLGLHGNRPLLLVRTQHELLIYQ---------AFRHPKGTLKLRFKKLKVLFVSDRS 58
L G HG+ L V+T+ + ++ F+H +G ++ R + ++S
Sbjct: 860 LQTECGHHGHILALYVQTRGDFIVVGDLMKSISLLIFKHEEGAIEERARDYNANWMS--- 916
Query: 59 KRANEQPGLPRGVYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDF 118
A E + + +G ++ + N+ E RL ++
Sbjct: 917 --------------AVEILDDDIYLG---AENNFNLFTVRKNSEGATDEERSRLEVVGEY 959
Query: 119 HLGQHVNTF----FKIRCKPSPISDAPGARSRFLTWYASLDGALGFFLPLPEKNYRRLLM 174
HLG+ VN F +R S + P + +++G +G LP Y L
Sbjct: 960 HLGEFVNRFRHGSLVMRLPDSDVGQIP------TVIFGTVNGVIGVIASLPHDQYLFLEK 1013
Query: 175 LQNVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKK 234
LQ + GGL+ +R++ + ++ +DG L+ FL LS EI K
Sbjct: 1014 LQTNLRKVIKGVGGLSHEQWRSFYNEKKTV--DAKNFLDGDLIESFLDLSRNRMEEISKA 1071
Query: 235 I 235
+
Sbjct: 1072 M 1072
>sp|Q6E7D1|DDB1_SOLCE DNA damage-binding protein 1 OS=Solanum cheesmanii GN=DDB1 PE=3 SV=1
Length = 1095
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 91/241 (37%), Gaps = 41/241 (17%)
Query: 8 LTVSLGLHGNRPLLLVRTQHELLIYQ---------AFRHPKGTLKLRFKKLKVLFVSDRS 58
L G HG+ L V+T+ + ++ F+H +G ++ R + ++S
Sbjct: 865 LQTECGHHGHILALYVQTRGDFIVVGDLMKSISLLIFKHEEGAIEERARDYNANWMS--- 921
Query: 59 KRANEQPGLPRGVYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDF 118
A E + + +G ++ + N+ E RL ++
Sbjct: 922 --------------AVEILDDDIYLG---AENNFNLFTVRKNSEGATDEERSRLEVVGEY 964
Query: 119 HLGQHVNTF----FKIRCKPSPISDAPGARSRFLTWYASLDGALGFFLPLPEKNYRRLLM 174
HLG+ VN F +R S + P + +++G +G LP Y L
Sbjct: 965 HLGEFVNRFRHGSLVMRLPDSDVGQIP------TVIFGTVNGVIGVIASLPHDQYLFLEK 1018
Query: 175 LQNVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKK 234
LQ + GGL+ +R++ + ++ +DG L+ FL LS EI K
Sbjct: 1019 LQTNLRKVIKGVGGLSHEQWRSFYNEKKTV--DAKNFLDGDLIESFLDLSRNRMEEISKA 1076
Query: 235 I 235
+
Sbjct: 1077 M 1077
>sp|Q9ESW0|DDB1_RAT DNA damage-binding protein 1 OS=Rattus norvegicus GN=Ddb1 PE=2 SV=1
Length = 1140
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 68/165 (41%), Gaps = 17/165 (10%)
Query: 96 LFMYQPEARESNGGHR--LIKKTDFHLGQHVNTFFKIRCKPSPISDAPGARS---RFLTW 150
LF+ Q ++ + R L + FHLG+ VN F C S + G S +
Sbjct: 974 LFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVF----CHGSLVMQNLGETSTPTQGSVL 1029
Query: 151 YASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRG 210
+++G +G L E Y LL +QN + G + +R++ + P+ G
Sbjct: 1030 LGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTE--RKTEPATG 1087
Query: 211 IIDGSLVWKFLQLSLGERLEICKKI------GSKHNDILDELYDI 249
IDG L+ FL +S + E+ + G K D+L +
Sbjct: 1088 FIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKV 1132
>sp|B0M0P5|DDB1_DICDI DNA damage-binding protein 1 OS=Dictyostelium discoideum GN=repE PE=1
SV=1
Length = 1181
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 5/124 (4%)
Query: 118 FHLGQHVNTFFKIRCKPSPISDAPGARSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQN 177
+H+G+ +N+ P SD P + YAS++G++G + E+++ LQ
Sbjct: 1050 YHIGESINSMRHGSLVRLPDSDQPIIPT---ILYASVNGSIGVVASISEEDFIFFSKLQK 1106
Query: 178 VMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGS 237
+ GG + +R + + S+ IDG L+ FL L +L+ +G
Sbjct: 1107 GLNQVVRGVGGFSHETWRAFSNDHHTI--DSKNFIDGDLIETFLDLKYESQLKAVADLGI 1164
Query: 238 KHND 241
+D
Sbjct: 1165 TPDD 1168
>sp|Q6BYK1|RSE1_DEBHA Pre-mRNA-splicing factor RSE1 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=RSE1 PE=3 SV=2
Length = 1256
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 21/150 (14%)
Query: 91 DKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSPISDAPGARSRFLTW 150
DK+ L YQ E+ + G RL +F+L Q + T F K S + G + +
Sbjct: 1095 DKDWSLLRYQ-ESYLNGSGSRLKNICEFYL-QDIPTSF---TKGSLVM---GGKESII-- 1144
Query: 151 YASLDGALGFFLPLPEKNYRRLL-MLQNVMVTHTSHT--------GGLNPRAFRTYKGKG 201
Y + G LG LPL +N + L LQ ++ + + G N K +
Sbjct: 1145 YTGIQGTLGLLLPLSTENEVKFLGDLQLLLRKYFDYNFDDFDKDKNGYNLLGKDHLKFRS 1204
Query: 202 YYAGNPSRGIIDGSLVWKFLQLSLGERLEI 231
YY NP + ++DG L+ +F +LS ++ I
Sbjct: 1205 YY--NPVKNVMDGDLIERFYELSQSMKIRI 1232
>sp|O13807|DDB1_SCHPO DNA damage-binding protein 1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ddb1 PE=1 SV=1
Length = 1072
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 9/140 (6%)
Query: 85 FMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIR-CKPSPISDAPGA 143
+ +++ D N V+ + + + + +L F+LG+ +N K R C D
Sbjct: 904 YFVTEADGNAVILLRDNVSPQLSDRKKLRWYKKFYLGELIN---KTRHCTFIEPQDKSLV 960
Query: 144 RSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHTGGLNPRAFRTYKGKGYY 203
+ L A++DG+L N LL LQ+ + GGL+ + ++ Y+G+
Sbjct: 961 TPQLLC--ATVDGSLMIVGDAGMSNTPLLLQLQDNIRKVIPSFGGLSHKEWKEYRGEN-- 1016
Query: 204 AGNPSRGIIDGSLVWKFLQL 223
+PS +IDGSL+ L L
Sbjct: 1017 ETSPS-DLIDGSLIESILGL 1035
>sp|Q04693|RSE1_YEAST Pre-mRNA-splicing factor RSE1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RSE1 PE=1 SV=1
Length = 1361
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 200 KGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGS-KHNDILDELYDI 249
+ YYA P R +IDG L FL+LSL E+ + K + S + DI+ + ++
Sbjct: 1308 RSYYA--PVRKVIDGDLCENFLRLSLNEQEFLAKNLKSVQVEDIIQTINEV 1356
>sp|P0CR22|RSE1_CRYNJ Pre-mRNA-splicing factor RSE1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=RSE1 PE=3 SV=1
Length = 1217
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 8/113 (7%)
Query: 143 ARSRFLTWYASLDGALGFFLP-LPEKNYRRLLMLQNVMVTHTSHTGGLNPRAFRTYKGKG 201
A R + Y ++ GA+G +P + + + L+ M T G + A+R G
Sbjct: 1111 AGGRDVLVYTTISGAVGALVPFVSSDDIEFMSTLEMHMRTQDISLVGRDHIAYR-----G 1165
Query: 202 YYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIEALSS 254
YY P +G++DG L F L ++ I + D+L +L + S+
Sbjct: 1166 YYV--PIKGVVDGDLCESFSLLPYPKQQAIALDLDRSVGDVLKKLEQMRTSSA 1216
>sp|P0CR23|RSE1_CRYNB Pre-mRNA-splicing factor RSE1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=RSE1 PE=3 SV=1
Length = 1217
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 8/113 (7%)
Query: 143 ARSRFLTWYASLDGALGFFLP-LPEKNYRRLLMLQNVMVTHTSHTGGLNPRAFRTYKGKG 201
A R + Y ++ GA+G +P + + + L+ M T G + A+R G
Sbjct: 1111 AGGRDVLVYTTISGAVGALVPFVSSDDIEFMSTLEMHMRTQDISLVGRDHIAYR-----G 1165
Query: 202 YYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIEALSS 254
YY P +G++DG L F L ++ I + D+L +L + S+
Sbjct: 1166 YYV--PIKGVVDGDLCESFSLLPYPKQQAIALDLDRSVGDVLKKLEQMRTSSA 1216
>sp|Q7RYR4|RSE1_NEUCR Pre-mRNA-splicing factor rse-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=rse-1 PE=3 SV=2
Length = 1209
Score = 31.6 bits (70), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 8/105 (7%)
Query: 151 YASLDGALGFFLPLPEKNYRRLLM-LQNVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSR 209
++ L G +G F+P + L+N M G + +R GYY P +
Sbjct: 1111 WSGLQGTVGVFIPFVSREDVDFFQNLENHMRAEDPPLAGRDHLIYR-----GYY--TPVK 1163
Query: 210 GIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIEALSS 254
G+IDG L +F L ++ I ++ +I ++ DI S+
Sbjct: 1164 GVIDGDLCERFSLLPNDKKQMIAGELDRSVREIERKISDIRTRSA 1208
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.140 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,848,951
Number of Sequences: 539616
Number of extensions: 4249141
Number of successful extensions: 7380
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 7300
Number of HSP's gapped (non-prelim): 56
length of query: 256
length of database: 191,569,459
effective HSP length: 115
effective length of query: 141
effective length of database: 129,513,619
effective search space: 18261420279
effective search space used: 18261420279
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)